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Change checkpoint_latest to checkpoint_best in inference script to match the priority in SCT #78

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yw7 opened this issue Oct 28, 2024 · 0 comments · May be fixed by #81
Open

Change checkpoint_latest to checkpoint_best in inference script to match the priority in SCT #78

yw7 opened this issue Oct 28, 2024 · 0 comments · May be fixed by #81

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@yw7
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yw7 commented Oct 28, 2024 •
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Here we have to change checkpoint_latest to checkpoint_best to match the priority in SCT:

totalspineseg/totalspineseg/inference.py

Line 301 in 7d92550

checkpoint = 'checkpoint_final.pth' if (nnUNet_results / step1_dataset / f'{nnUNetTrainer}__{nnUNetPlans}__{configuration}' / f'fold_{fold}' / 'checkpoint_final.pth').is_file() else 'checkpoint_latest.pth'

totalspineseg/totalspineseg/inference.py

Line 552 in 7d92550

checkpoint = 'checkpoint_final.pth' if (nnUNet_results / step2_dataset / f'{nnUNetTrainer}__{nnUNetPlans}__{configuration}' / f'fold_{fold}' / 'checkpoint_final.pth').is_file() else 'checkpoint_latest.pth'

yw7 added a commit that referenced this issue Nov 15, 2024
@yw7
Change checkpoint_latest to checkpoint_best in inference script
ed745ae 
Fixes #78

Change `checkpoint_latest.pth` to `checkpoint_best.pth` in the inference script.

* Update line 301 in `totalspineseg/inference.py` to use `checkpoint_best.pth` instead of `checkpoint_latest.pth`.
* Update line 552 in `totalspineseg/inference.py` to use `checkpoint_best.pth` instead of `checkpoint_latest.pth`.

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For more details, open the [Copilot Workspace session](https://copilot-workspace.githubnext.com/neuropoly/totalspineseg/issues/78?shareId=XXXX-XXXX-XXXX-XXXX).
@yw7 yw7 linked a pull request Nov 15, 2024 that will close this issue
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Change checkpoint_latest to checkpoint_best in inference script neuropoly/totalspineseg
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@yw7