New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Explore parallelizing `transform-gisaid` #448

Open

Tracked by

joverlee521 opened this issue Jun 13, 2024 · 0 comments

Contributor

joverlee521 commented Jun 13, 2024

Originally proposed by @corneliusroemer in #446 (comment)

How hard is it to parallelize ~4h - transform-gisaid?

As this operates on ndjson lines, it might be parallelizable, or at least some part of it.

The obvious way to do so would be to have a split rule to divide input files into N chunks, run transform, and merge back.

joverlee521 mentioned this issue

GISAID workflow hitting max_session_duration #446

Open

5 tasks

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment