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[Fix] Improve error message when the virus properties file is missing #704
Since version 1.10.0 Nextclade CLI have introduced a new required input file, virus_properties.json and datasets and documentation were updated to match. However, users who don't use datasets might have encountered breakage due to a missing file: when running Nextclade CLI without either --input-dataset of --input-virus-properties flag provided, it would stop with an unclear error message. In this release we improve the error message, making sure that that explains the problem and offers a solution.
This does not affect Nextclade Web or Nextalign CLI.
In order to facilitate upgrades, for most users, we recommend to:
download the latest dataset before each Nextclade CLI session (e.g. in the beginning of an automated workflow, or once you start a batch of experiments manually) using nextclade dataset get command
use --input-dataset flag instead of individual --input-* flags for dataset files when issuing nextclade run command
if necessary, override some of the individual input files using corresponding --input-* flags
[Fix] Add information about virus_properties.json or --input-virus-properties to changelog
In the excitement of bringing the new features, we forgot to mention virus_properties.json or --input-virus-properties in the changelog when Nextclade CLI 1.10.0 was released. We now added this information retroactively.
This discussion was created from the release 1.10.1.
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Nextclade CLI 1.10.1 (2022-01-26)
[Fix] Improve error message when the virus properties file is missing #704
Since version 1.10.0 Nextclade CLI have introduced a new required input file,
virus_properties.json
and datasets and documentation were updated to match. However, users who don't use datasets might have encountered breakage due to a missing file: when running Nextclade CLI without either--input-dataset
of--input-virus-properties
flag provided, it would stop with an unclear error message. In this release we improve the error message, making sure that that explains the problem and offers a solution.This does not affect Nextclade Web or Nextalign CLI.
In order to facilitate upgrades, for most users, we recommend to:
nextclade dataset get
command--input-dataset
flag instead of individual--input-*
flags for dataset files when issuingnextclade run
command--input-*
flags[Fix] Add information about
virus_properties.json
or--input-virus-properties
to changelogIn the excitement of bringing the new features, we forgot to mention
virus_properties.json
or--input-virus-properties
in the changelog when Nextclade CLI 1.10.0 was released. We now added this information retroactively.This discussion was created from the release 1.10.1.
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