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Phylo placement part 1 #561
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enhancement
New feature or request
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This was referenced Mar 27, 2023
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Description of feature
Call the
fasta_newick_epang_gappa
subworkflow for all ASV sequence, given user specified parameters:pplace_tree
(A tree in newick format)pplace_aln
(The corresponding alignment in fasta format)pplace_model
(Phylogenetic model for the tree)pplace_taxonomy
(TSV file with sequence names (first column) and semicolon-separated taxonomy strings)pplace_alnmethod
(Alignment strategy to use; defaulthmmer
)pplace_name
(Name to use for output files for this run, defaultuser_tree
)Test data:
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