diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index c070b0b..807c35c 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -32,7 +32,7 @@ jobs: if [[ "${{ github.event_name }}" == "pull_request" && "${{ github.base_ref }}" == "dev" && "${{ matrix.NXF_VER }}" != "latest-everything" ]]; then echo matrix='["latest-everything"]' | tee -a $GITHUB_OUTPUT else - echo matrix='["latest-everything", "23.04.0"]' | tee -a $GITHUB_OUTPUT + echo matrix='["latest-everything", "23.10.0"]' | tee -a $GITHUB_OUTPUT fi test: diff --git a/lib/WorkflowCreatetaxdb.groovy b/lib/WorkflowCreatetaxdb.groovy index 988392e..5814e2a 100755 --- a/lib/WorkflowCreatetaxdb.groovy +++ b/lib/WorkflowCreatetaxdb.groovy @@ -58,7 +58,6 @@ class WorkflowCreatetaxdb { // Uncomment function in methodsDescriptionText to render in MultiQC report def citation_text = [ "Tools used in the workflow included:", - "FastQC (Andrews 2010),", "MultiQC (Ewels et al. 2016)", "." ].join(' ').trim() @@ -72,7 +71,6 @@ class WorkflowCreatetaxdb { // Can use ternary operators to dynamically construct based conditions, e.g. params["run_xyz"] ? "
  • Author (2023) Pub name, Journal, DOI
  • " : "", // Uncomment function in methodsDescriptionText to render in MultiQC report def reference_text = [ - "
  • Andrews S, (2010) FastQC, URL: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/).
  • ", "
  • Ewels, P., Magnusson, M., Lundin, S., & Käller, M. (2016). MultiQC: summarize analysis results for multiple tools and samples in a single report. Bioinformatics , 32(19), 3047–3048. doi: /10.1093/bioinformatics/btw354
  • " ].join(' ').trim()