basicpy version bump (#5623)

The new container version no longer requires overriding the entrypoint.

modules/nf-core/basicpy/main.nf

@@ -2,7 +2,7 @@ process BASICPY {
     tag "$meta.id"
     label 'process_single'
 
-    container "docker.io/yfukai/basicpy-docker-mcmicro:0.2.1"
+    container "docker.io/labsyspharm/basicpy-docker-mcmicro:1.2.0-patch1"
 
     input:
     tuple val(meta), path(image)
@@ -21,7 +21,7 @@ process BASICPY {
     }
     def args = task.ext.args ?: ''
     def prefix = task.ext.prefix ?: "${meta.id}"
-    def VERSION = "1.0.1" // WARN: Version information not provided by tool on CLI. Please update this string when bumping
+    def VERSION = "1.2.0-patch1" // WARN: Version information not provided by tool on CLI. Please update this string when bumping
     """
     /opt/main.py -i $image -o . $args
 

modules/nf-core/basicpy/meta.yml

@@ -7,7 +7,7 @@ keywords:
   - imaging
 tools:
   - "basicpy":
-      description: "BaSiCPy is a python package for background and shading correction of optical microscopy images. It is developed based on the Matlab version of BaSiC tool with major improvements in the algorithm. The container of this tool needs to be initialized with an empty Entrypoint. See the nextflow.config of the tests for details."
+      description: "BaSiCPy is a python package for background and shading correction of optical microscopy images. It is developed based on the Matlab version of BaSiC tool with major improvements in the algorithm."
       homepage: "https://github.com/peng-lab/BaSiCPy"
       documentation: "https://basicpy.readthedocs.io/en/latest/index.html"
       tool_dev_url: "https://github.com/peng-lab/BaSiCPy"

tests/modules/nf-core/basicpy/nextflow.config

@@ -3,5 +3,3 @@ process {
     publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
 
 }
-
-docker.runOptions = '--entrypoint ""'