From bee24a00e3b28a72a4b2635568ffdd119cabadec Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Wed, 11 Dec 2024 17:14:58 +0000 Subject: [PATCH] update snaps --- .../star/align/tests/main.nf.test.snap | 90 +++++++++---------- .../genomegenerate/tests/main.nf.test.snap | 36 ++++---- .../fastq_align_star/tests/main.nf.test.snap | 40 ++++----- 3 files changed, 83 insertions(+), 83 deletions(-) diff --git a/modules/nf-core/star/align/tests/main.nf.test.snap b/modules/nf-core/star/align/tests/main.nf.test.snap index b533fb8b40c..a1ec3a3d028 100644 --- a/modules/nf-core/star/align/tests/main.nf.test.snap +++ b/modules/nf-core/star/align/tests/main.nf.test.snap @@ -97,7 +97,7 @@ ] ], "3": [ - "versions.yml:md5,a149bba1dbb5194560abdd813c7848e3" + "versions.yml:md5,b416145d7b5b8a080e832a7f7cde4c44" ], "4": [ [ @@ -307,7 +307,7 @@ ] ], "versions": [ - "versions.yml:md5,a149bba1dbb5194560abdd813c7848e3" + "versions.yml:md5,b416145d7b5b8a080e832a7f7cde4c44" ], "wig": [ [ @@ -321,10 +321,10 @@ } ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-20T17:09:08.738074176" + "timestamp": "2024-12-11T16:28:39.242074494" }, "homo_sapiens - paired_end - arriba - stub": { "content": [ @@ -424,7 +424,7 @@ ] ], "3": [ - "versions.yml:md5,a149bba1dbb5194560abdd813c7848e3" + "versions.yml:md5,b416145d7b5b8a080e832a7f7cde4c44" ], "4": [ [ @@ -634,7 +634,7 @@ ] ], "versions": [ - "versions.yml:md5,a149bba1dbb5194560abdd813c7848e3" + "versions.yml:md5,b416145d7b5b8a080e832a7f7cde4c44" ], "wig": [ [ @@ -648,10 +648,10 @@ } ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-20T17:09:36.122131869" + "timestamp": "2024-12-11T16:29:08.392620556" }, "homo_sapiens - single_end": { "content": [ @@ -703,14 +703,14 @@ ], [ - "versions.yml:md5,a149bba1dbb5194560abdd813c7848e3" + "versions.yml:md5,b416145d7b5b8a080e832a7f7cde4c44" ] ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-20T17:01:22.197991909" + "timestamp": "2024-12-11T16:21:34.549483887" }, "homo_sapiens - paired_end": { "content": [ @@ -762,14 +762,14 @@ ], [ - "versions.yml:md5,a149bba1dbb5194560abdd813c7848e3" + "versions.yml:md5,b416145d7b5b8a080e832a7f7cde4c44" ] ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-20T17:02:06.988663857" + "timestamp": "2024-12-11T16:22:17.011253146" }, "homo_sapiens - paired_end - multiple - stub": { "content": [ @@ -869,7 +869,7 @@ ] ], "3": [ - "versions.yml:md5,a149bba1dbb5194560abdd813c7848e3" + "versions.yml:md5,b416145d7b5b8a080e832a7f7cde4c44" ], "4": [ [ @@ -1079,7 +1079,7 @@ ] ], "versions": [ - "versions.yml:md5,a149bba1dbb5194560abdd813c7848e3" + "versions.yml:md5,b416145d7b5b8a080e832a7f7cde4c44" ], "wig": [ [ @@ -1093,10 +1093,10 @@ } ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-20T17:10:12.005468781" + "timestamp": "2024-12-11T16:29:31.072104862" }, "homo_sapiens - paired_end - multiple": { "content": [ @@ -1148,14 +1148,14 @@ ], [ - "versions.yml:md5,a149bba1dbb5194560abdd813c7848e3" + "versions.yml:md5,b416145d7b5b8a080e832a7f7cde4c44" ] ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-20T17:08:54.877286681" + "timestamp": "2024-12-11T16:28:26.645008336" }, "homo_sapiens - paired_end - stub": { "content": [ @@ -1255,7 +1255,7 @@ ] ], "3": [ - "versions.yml:md5,a149bba1dbb5194560abdd813c7848e3" + "versions.yml:md5,b416145d7b5b8a080e832a7f7cde4c44" ], "4": [ [ @@ -1465,7 +1465,7 @@ ] ], "versions": [ - "versions.yml:md5,a149bba1dbb5194560abdd813c7848e3" + "versions.yml:md5,b416145d7b5b8a080e832a7f7cde4c44" ], "wig": [ [ @@ -1479,10 +1479,10 @@ } ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-20T17:09:20.911466345" + "timestamp": "2024-12-11T16:28:53.816280805" }, "homo_sapiens - paired_end - starfusion": { "content": [ @@ -1525,14 +1525,14 @@ ], [ - "versions.yml:md5,a149bba1dbb5194560abdd813c7848e3" + "versions.yml:md5,b416145d7b5b8a080e832a7f7cde4c44" ] ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-20T17:07:25.0639914" + "timestamp": "2024-12-11T16:27:14.136111964" }, "homo_sapiens - paired_end - arriba": { "content": [ @@ -1574,14 +1574,14 @@ ], [ - "versions.yml:md5,a149bba1dbb5194560abdd813c7848e3" + "versions.yml:md5,b416145d7b5b8a080e832a7f7cde4c44" ] ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-20T17:04:00.685784211" + "timestamp": "2024-12-11T16:24:00.829462526" }, "homo_sapiens - paired_end - starfusion - stub": { "content": [ @@ -1681,7 +1681,7 @@ ] ], "3": [ - "versions.yml:md5,a149bba1dbb5194560abdd813c7848e3" + "versions.yml:md5,b416145d7b5b8a080e832a7f7cde4c44" ], "4": [ [ @@ -1891,7 +1891,7 @@ ] ], "versions": [ - "versions.yml:md5,a149bba1dbb5194560abdd813c7848e3" + "versions.yml:md5,b416145d7b5b8a080e832a7f7cde4c44" ], "wig": [ [ @@ -1905,9 +1905,9 @@ } ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-20T17:09:53.173671551" + "timestamp": "2024-12-11T16:29:20.015372487" } } \ No newline at end of file diff --git a/modules/nf-core/star/genomegenerate/tests/main.nf.test.snap b/modules/nf-core/star/genomegenerate/tests/main.nf.test.snap index 3db2567823a..b79da991d1d 100644 --- a/modules/nf-core/star/genomegenerate/tests/main.nf.test.snap +++ b/modules/nf-core/star/genomegenerate/tests/main.nf.test.snap @@ -3,14 +3,14 @@ "content": [ "[Genome, Log.out, SA, SAindex, chrLength.txt, chrName.txt, chrNameLength.txt, chrStart.txt, exonGeTrInfo.tab, exonInfo.tab, geneInfo.tab, genomeParameters.txt, sjdbInfo.txt, sjdbList.fromGTF.out.tab, sjdbList.out.tab, transcriptInfo.tab]", [ - "versions.yml:md5,14b05d04c9eca568e9ed4888aaf26fa6" + "versions.yml:md5,0c6c5fab50cc8601f9072268a2f49aad" ] ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-19T20:37:47.410432728" + "timestamp": "2024-12-11T16:29:40.748676908" }, "fasta_gtf_stub": { "content": [ @@ -41,7 +41,7 @@ ] ], "1": [ - "versions.yml:md5,14b05d04c9eca568e9ed4888aaf26fa6" + "versions.yml:md5,0c6c5fab50cc8601f9072268a2f49aad" ], "index": [ [ @@ -69,15 +69,15 @@ ] ], "versions": [ - "versions.yml:md5,14b05d04c9eca568e9ed4888aaf26fa6" + "versions.yml:md5,0c6c5fab50cc8601f9072268a2f49aad" ] } ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-19T20:38:09.165234795" + "timestamp": "2024-12-11T16:30:11.024076742" }, "fasta_stub": { "content": [ @@ -101,7 +101,7 @@ ] ], "1": [ - "versions.yml:md5,14b05d04c9eca568e9ed4888aaf26fa6" + "versions.yml:md5,0c6c5fab50cc8601f9072268a2f49aad" ], "index": [ [ @@ -122,27 +122,27 @@ ] ], "versions": [ - "versions.yml:md5,14b05d04c9eca568e9ed4888aaf26fa6" + "versions.yml:md5,0c6c5fab50cc8601f9072268a2f49aad" ] } ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-19T20:38:19.530862664" + "timestamp": "2024-12-11T16:30:22.674364031" }, "fasta": { "content": [ "[Genome, Log.out, SA, SAindex, chrLength.txt, chrName.txt, chrNameLength.txt, chrStart.txt, genomeParameters.txt]", [ - "versions.yml:md5,14b05d04c9eca568e9ed4888aaf26fa6" + "versions.yml:md5,0c6c5fab50cc8601f9072268a2f49aad" ] ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-19T20:37:58.667436398" + "timestamp": "2024-12-11T16:29:57.958812354" } } \ No newline at end of file diff --git a/subworkflows/nf-core/fastq_align_star/tests/main.nf.test.snap b/subworkflows/nf-core/fastq_align_star/tests/main.nf.test.snap index 9e55ed61037..c21ec0cc9f3 100644 --- a/subworkflows/nf-core/fastq_align_star/tests/main.nf.test.snap +++ b/subworkflows/nf-core/fastq_align_star/tests/main.nf.test.snap @@ -52,6 +52,7 @@ ] ], [ + "versions.yml:md5,167faaf660e4936645b0ad5a9d3bf620", "versions.yml:md5,24b681997fbdd563910240af500d965e", "versions.yml:md5,2bdea75e8dad77676c54b806ceecb68b", "versions.yml:md5,2e0fd05eea17eb1f5cdf079c12a30b88", @@ -61,15 +62,14 @@ "versions.yml:md5,9dd7217e54100569bf9f87f7a1cca54a", "versions.yml:md5,a305cb08e7cb3194be54d0bb8a257722", "versions.yml:md5,ade8e9901ff456f43bc0f93f5f7af793", - "versions.yml:md5,ec328c7ea462702388fa15204aeb6689", - "versions.yml:md5,f291e86c2b53ec8e72283ead209029a4" + "versions.yml:md5,ec328c7ea462702388fa15204aeb6689" ] ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-19T23:28:34.840049572" + "timestamp": "2024-12-11T17:09:46.703861921" }, "homo_sapiens - fastq - paired_end - with_transcriptome": { "content": [ @@ -144,6 +144,7 @@ ] ], [ + "versions.yml:md5,167faaf660e4936645b0ad5a9d3bf620", "versions.yml:md5,24b681997fbdd563910240af500d965e", "versions.yml:md5,2bdea75e8dad77676c54b806ceecb68b", "versions.yml:md5,2e0fd05eea17eb1f5cdf079c12a30b88", @@ -153,15 +154,14 @@ "versions.yml:md5,9dd7217e54100569bf9f87f7a1cca54a", "versions.yml:md5,a305cb08e7cb3194be54d0bb8a257722", "versions.yml:md5,ade8e9901ff456f43bc0f93f5f7af793", - "versions.yml:md5,ec328c7ea462702388fa15204aeb6689", - "versions.yml:md5,f291e86c2b53ec8e72283ead209029a4" + "versions.yml:md5,ec328c7ea462702388fa15204aeb6689" ] ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-19T23:27:44.448552779" + "timestamp": "2024-12-11T17:08:59.431516768" }, "homo_sapiens - fastq - single_end": { "content": [ @@ -207,19 +207,19 @@ ] ], [ + "versions.yml:md5,167faaf660e4936645b0ad5a9d3bf620", "versions.yml:md5,24b681997fbdd563910240af500d965e", "versions.yml:md5,2e0fd05eea17eb1f5cdf079c12a30b88", "versions.yml:md5,421308f325b1038feafdb6862cebc28a", "versions.yml:md5,6a96fec10a72e1da236e6e1d7519590e", - "versions.yml:md5,9dd7217e54100569bf9f87f7a1cca54a", - "versions.yml:md5,f291e86c2b53ec8e72283ead209029a4" + "versions.yml:md5,9dd7217e54100569bf9f87f7a1cca54a" ] ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-19T23:26:07.627451879" + "timestamp": "2024-12-11T17:07:23.833781959" }, "homo_sapiens - fastq - paired_end": { "content": [ @@ -265,18 +265,18 @@ ] ], [ + "versions.yml:md5,167faaf660e4936645b0ad5a9d3bf620", "versions.yml:md5,24b681997fbdd563910240af500d965e", "versions.yml:md5,2e0fd05eea17eb1f5cdf079c12a30b88", "versions.yml:md5,421308f325b1038feafdb6862cebc28a", "versions.yml:md5,6a96fec10a72e1da236e6e1d7519590e", - "versions.yml:md5,9dd7217e54100569bf9f87f7a1cca54a", - "versions.yml:md5,f291e86c2b53ec8e72283ead209029a4" + "versions.yml:md5,9dd7217e54100569bf9f87f7a1cca54a" ] ], "meta": { - "nf-test": "0.9.0", - "nextflow": "24.04.4" + "nf-test": "0.9.2", + "nextflow": "24.10.2" }, - "timestamp": "2024-10-19T23:26:54.22382094" + "timestamp": "2024-12-11T17:08:08.904146433" } } \ No newline at end of file