From d752b3edfab155e353c93ed868a24db2fc047ab0 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Tue, 10 Dec 2024 09:45:56 +0100 Subject: [PATCH] Update: deseq2/differential for upcoming improved standardisation of template modules (#7178) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * Rename deseq_de.R to deseq2_differential.R for standaisation * Update main.nf --------- Co-authored-by: Famke Bäuerle <45968370+famosab@users.noreply.github.com> --- modules/nf-core/deseq2/differential/main.nf | 2 +- .../templates/{deseq_de.R => deseq2_differential.R} | 0 2 files changed, 1 insertion(+), 1 deletion(-) rename modules/nf-core/deseq2/differential/templates/{deseq_de.R => deseq2_differential.R} (100%) diff --git a/modules/nf-core/deseq2/differential/main.nf b/modules/nf-core/deseq2/differential/main.nf index 4d25602f7d6..c76187b50b5 100644 --- a/modules/nf-core/deseq2/differential/main.nf +++ b/modules/nf-core/deseq2/differential/main.nf @@ -29,7 +29,7 @@ process DESEQ2_DIFFERENTIAL { task.ext.when == null || task.ext.when script: - template 'deseq_de.R' + template 'deseq2_differential.R' stub: """ diff --git a/modules/nf-core/deseq2/differential/templates/deseq_de.R b/modules/nf-core/deseq2/differential/templates/deseq2_differential.R similarity index 100% rename from modules/nf-core/deseq2/differential/templates/deseq_de.R rename to modules/nf-core/deseq2/differential/templates/deseq2_differential.R