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bump ngsbits #7193

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merged 1 commit into from
Dec 10, 2024
+11 −11
Merged

bump ngsbits #7193

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2 changes: 1 addition & 1 deletion modules/nf-core/ngsbits/samplegender/environment.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,4 +2,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- bioconda::ngs-bits=2023_02
- bioconda::ngs-bits=2024_11
6 changes: 3 additions & 3 deletions modules/nf-core/ngsbits/samplegender/main.nf
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Expand Up @@ -4,13 +4,13 @@ process NGSBITS_SAMPLEGENDER {

conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/ngs-bits:2023_02--py311ha0b7adc_2':
'biocontainers/ngs-bits:2023_02--py311ha0b7adc_2' }"
'https://depot.galaxyproject.org/singularity/ngs-bits:2024_11--py312hd80e9a6_0':
'biocontainers/ngs-bits:2024_11--py312hd80e9a6_0' }"

input:
tuple val(meta), path(bam), path(bai)
tuple val(meta2), path(fasta)
tuple val(meta2), path(fai)
tuple val(meta3), path(fai)
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val method

output:
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2 changes: 1 addition & 1 deletion modules/nf-core/ngsbits/samplegender/meta.yml
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Expand Up @@ -36,7 +36,7 @@ input:
type: file
description: The reference FASTA to use (mandatory when CRAM files are used)
pattern: "*.{fasta,fa,fna}"
- - meta2:
- - meta3:
type: map
description: |
Groovy Map containing reference fasta information
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2 changes: 1 addition & 1 deletion modules/nf-core/ngsbits/samplegender/tests/main.nf.test
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Expand Up @@ -9,7 +9,7 @@ nextflow_process {
tag "ngsbits"
tag "ngsbits/samplegender"

// Only a stub test here because the modules needs the full chrX and chrY
// Only a stub test here because the module needs the full chrX and chrY
test("homo_sapiens - bam, bai, [], [], sry - stub") {

options "-stub"
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10 changes: 5 additions & 5 deletions modules/nf-core/ngsbits/samplegender/tests/main.nf.test.snap
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Expand Up @@ -11,7 +11,7 @@
]
],
"1": [
"versions.yml:md5,72f3e70be3e6a734bf39d1a6bf6d604b"
"versions.yml:md5,9c2c2b8cf880d89b4eb1c06e3b7f7333"
],
"tsv": [
[
Expand All @@ -22,14 +22,14 @@
]
],
"versions": [
"versions.yml:md5,72f3e70be3e6a734bf39d1a6bf6d604b"
"versions.yml:md5,9c2c2b8cf880d89b4eb1c06e3b7f7333"
]
}
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "24.02.0"
"nf-test": "0.9.1",
"nextflow": "24.10.1"
},
"timestamp": "2024-03-18T15:36:37.639882564"
"timestamp": "2024-12-10T13:36:08.650020628"
}
}
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