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modules.json
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modules.json
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{
"name": "nf-core/phaseimpute",
"homePage": "https://github.com/nf-core/phaseimpute",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bcftools/annotate": {
"branch": "master",
"git_sha": "cb08035150685b11d890d90c9534d4f16869eaec",
"installed_by": ["modules"],
"patch": "modules/nf-core/bcftools/annotate/bcftools-annotate.diff"
},
"bcftools/concat": {
"branch": "master",
"git_sha": "d1e0ec7670fa77905a378627232566ce54c3c26d",
"installed_by": ["modules"],
"patch": "modules/nf-core/bcftools/concat/bcftools-concat.diff"
},
"bcftools/convert": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"bcftools/index": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["bam_impute_glimpse", "vcf_phase_shapeit5"]
},
"bcftools/merge": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"],
"patch": "modules/nf-core/bcftools/merge/bcftools-merge.diff"
},
"bcftools/mpileup": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"],
"patch": "modules/nf-core/bcftools/mpileup/bcftools-mpileup.diff"
},
"bcftools/norm": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"bcftools/pluginsplit": {
"branch": "master",
"git_sha": "14c910af1f9c20c65e5df9325a1e4d3939d524d1",
"installed_by": ["modules"],
"patch": "modules/nf-core/bcftools/pluginsplit/bcftools-pluginsplit.diff"
},
"bcftools/query": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"bcftools/stats": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"bcftools/view": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"bedtools/makewindows": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["vcf_phase_shapeit5"]
},
"gawk": {
"branch": "master",
"git_sha": "97321eded31a12598837a476d3615300af413bb7",
"installed_by": ["modules"],
"patch": "modules/nf-core/gawk/gawk.diff"
},
"glimpse/chunk": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["bam_impute_glimpse"]
},
"glimpse/ligate": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["bam_impute_glimpse"]
},
"glimpse/phase": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["bam_impute_glimpse"]
},
"glimpse2/chunk": {
"branch": "master",
"git_sha": "cc64e71652f67ce627064af51008fe0a00850987",
"installed_by": ["modules"],
"patch": "modules/nf-core/glimpse2/chunk/glimpse2-chunk.diff"
},
"glimpse2/concordance": {
"branch": "master",
"git_sha": "cc64e71652f67ce627064af51008fe0a00850987",
"installed_by": ["modules"]
},
"glimpse2/ligate": {
"branch": "master",
"git_sha": "cc64e71652f67ce627064af51008fe0a00850987",
"installed_by": ["modules"]
},
"glimpse2/phase": {
"branch": "master",
"git_sha": "cc64e71652f67ce627064af51008fe0a00850987",
"installed_by": ["modules"],
"patch": "modules/nf-core/glimpse2/phase/glimpse2-phase.diff"
},
"glimpse2/splitreference": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
},
"quilt/quilt": {
"branch": "master",
"git_sha": "82dcdacf8aa932e6683e15a8992ed1cd6fcb174f",
"installed_by": ["modules"],
"patch": "modules/nf-core/quilt/quilt/quilt-quilt.diff"
},
"samtools/coverage": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/coverage/samtools-coverage.diff"
},
"samtools/depth": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/depth/samtools-depth.diff"
},
"samtools/faidx": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
},
"samtools/merge": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/merge/samtools-merge.diff"
},
"samtools/reheader": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/reheader/samtools-reheader.diff"
},
"samtools/view": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/view/samtools-view.diff"
},
"shapeit5/ligate": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["vcf_phase_shapeit5"]
},
"shapeit5/phasecommon": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["vcf_phase_shapeit5"],
"patch": "modules/nf-core/shapeit5/phasecommon/shapeit5-phasecommon.diff"
},
"stitch": {
"branch": "master",
"git_sha": "55e411128ca5036def5dae1aa28a09e3776f59ea",
"installed_by": ["modules"],
"patch": "modules/nf-core/stitch/stitch.diff"
},
"tabix/bgzip": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"tabix/tabix": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"vcflib/vcffixup": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "3aa0aec1d52d492fe241919f0c6100ebf0074082",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "1b6b9a3338d011367137808b49b923515080e3ba",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
"installed_by": ["subworkflows"]
}
}
}
}
}
}