From c59e76d50e380e5bc65b9e3577841c186fb7f599 Mon Sep 17 00:00:00 2001 From: FriederikeHanssen Date: Wed, 13 Sep 2023 09:56:03 +0000 Subject: [PATCH 1/2] update checksums due to input csv changes --- tests/test_aligner_sentieon_bwamem.yml | 48 +++++++++++++------------- 1 file changed, 24 insertions(+), 24 deletions(-) diff --git a/tests/test_aligner_sentieon_bwamem.yml b/tests/test_aligner_sentieon_bwamem.yml index 0fe70c25b8..f919a725ba 100644 --- a/tests/test_aligner_sentieon_bwamem.yml +++ b/tests/test_aligner_sentieon_bwamem.yml @@ -52,23 +52,23 @@ - path: results/reports/mosdepth/test/test.md.mosdepth.global.dist.txt md5sum: b61e1acee11a6ddf7ce3232a5948a6a0 - path: results/reports/mosdepth/test/test.md.mosdepth.region.dist.txt - md5sum: 33c7002cc7e66cbc0509bb9532ec3f1e + md5sum: 1a382f98d488d2ae3df83a0d87caafc1 - path: results/reports/mosdepth/test/test.md.mosdepth.summary.txt - md5sum: 8fcc45ab48b03c38b5200e02da63dbe1 + md5sum: 9afbcd5e44b62b3947e47af850a66188 - path: results/reports/mosdepth/test/test.md.regions.bed.gz - md5sum: a27a092f08b48648e11eb8730cba02b9 + md5sum: 3bd6a6f7127394802d9a7c7d559072ee - path: results/reports/mosdepth/test/test.md.regions.bed.gz.csi - md5sum: 544e02fcca548749a0af758d0a2df352 + md5sum: 72ae14370dfdaab906e50d0552c90119 - path: results/reports/mosdepth/test/test.recal.mosdepth.global.dist.txt md5sum: b61e1acee11a6ddf7ce3232a5948a6a0 - path: results/reports/mosdepth/test/test.recal.mosdepth.region.dist.txt - md5sum: 33c7002cc7e66cbc0509bb9532ec3f1e + md5sum: 1a382f98d488d2ae3df83a0d87caafc1 - path: results/reports/mosdepth/test/test.recal.mosdepth.summary.txt - md5sum: 8fcc45ab48b03c38b5200e02da63dbe1 + md5sum: 9afbcd5e44b62b3947e47af850a66188 - path: results/reports/mosdepth/test/test.recal.regions.bed.gz - md5sum: a27a092f08b48648e11eb8730cba02b9 + md5sum: 3bd6a6f7127394802d9a7c7d559072ee - path: results/reports/mosdepth/test/test.recal.regions.bed.gz.csi - md5sum: 544e02fcca548749a0af758d0a2df352 + md5sum: 72ae14370dfdaab906e50d0552c90119 - path: results/reports/samtools/test/test.md.cram.stats # conda changes md5sums for test - path: results/reports/samtools/test/test.recal.cram.stats @@ -138,23 +138,23 @@ - path: results/reports/mosdepth/test/test.md.mosdepth.global.dist.txt md5sum: b61e1acee11a6ddf7ce3232a5948a6a0 - path: results/reports/mosdepth/test/test.md.mosdepth.region.dist.txt - md5sum: 33c7002cc7e66cbc0509bb9532ec3f1e + md5sum: 1a382f98d488d2ae3df83a0d87caafc1 - path: results/reports/mosdepth/test/test.md.mosdepth.summary.txt - md5sum: 8fcc45ab48b03c38b5200e02da63dbe1 + md5sum: 9afbcd5e44b62b3947e47af850a66188 - path: results/reports/mosdepth/test/test.md.regions.bed.gz - md5sum: a27a092f08b48648e11eb8730cba02b9 + md5sum: 3bd6a6f7127394802d9a7c7d559072ee - path: results/reports/mosdepth/test/test.md.regions.bed.gz.csi - md5sum: 544e02fcca548749a0af758d0a2df352 + md5sum: 72ae14370dfdaab906e50d0552c90119 - path: results/reports/mosdepth/test/test.recal.mosdepth.global.dist.txt md5sum: b61e1acee11a6ddf7ce3232a5948a6a0 - path: results/reports/mosdepth/test/test.recal.mosdepth.region.dist.txt - md5sum: 33c7002cc7e66cbc0509bb9532ec3f1e + md5sum: 1a382f98d488d2ae3df83a0d87caafc1 - path: results/reports/mosdepth/test/test.recal.mosdepth.summary.txt - md5sum: 8fcc45ab48b03c38b5200e02da63dbe1 + md5sum: 9afbcd5e44b62b3947e47af850a66188 - path: results/reports/mosdepth/test/test.recal.regions.bed.gz - md5sum: a27a092f08b48648e11eb8730cba02b9 + md5sum: 3bd6a6f7127394802d9a7c7d559072ee - path: results/reports/mosdepth/test/test.recal.regions.bed.gz.csi - md5sum: 544e02fcca548749a0af758d0a2df352 + md5sum: 72ae14370dfdaab906e50d0552c90119 - path: results/reports/samtools/test/test.md.cram.stats # conda changes md5sums for test - path: results/reports/samtools/test/test.recal.cram.stats @@ -192,23 +192,23 @@ - path: results/reports/mosdepth/test/test.md.mosdepth.global.dist.txt md5sum: b61e1acee11a6ddf7ce3232a5948a6a0 - path: results/reports/mosdepth/test/test.md.mosdepth.region.dist.txt - md5sum: 33c7002cc7e66cbc0509bb9532ec3f1e + md5sum: 1a382f98d488d2ae3df83a0d87caafc1 - path: results/reports/mosdepth/test/test.md.mosdepth.summary.txt - md5sum: 8fcc45ab48b03c38b5200e02da63dbe1 + md5sum: 9afbcd5e44b62b3947e47af850a66188 - path: results/reports/mosdepth/test/test.md.regions.bed.gz - md5sum: a27a092f08b48648e11eb8730cba02b9 + md5sum: 3bd6a6f7127394802d9a7c7d559072ee - path: results/reports/mosdepth/test/test.md.regions.bed.gz.csi - md5sum: 544e02fcca548749a0af758d0a2df352 + md5sum: 72ae14370dfdaab906e50d0552c90119 - path: results/reports/mosdepth/test/test.recal.mosdepth.global.dist.txt md5sum: b61e1acee11a6ddf7ce3232a5948a6a0 - path: results/reports/mosdepth/test/test.recal.mosdepth.region.dist.txt - md5sum: 33c7002cc7e66cbc0509bb9532ec3f1e + md5sum: 1a382f98d488d2ae3df83a0d87caafc1 - path: results/reports/mosdepth/test/test.recal.mosdepth.summary.txt - md5sum: 8fcc45ab48b03c38b5200e02da63dbe1 + md5sum: 9afbcd5e44b62b3947e47af850a66188 - path: results/reports/mosdepth/test/test.recal.regions.bed.gz - md5sum: a27a092f08b48648e11eb8730cba02b9 + md5sum: 3bd6a6f7127394802d9a7c7d559072ee - path: results/reports/mosdepth/test/test.recal.regions.bed.gz.csi - md5sum: 544e02fcca548749a0af758d0a2df352 + md5sum: 72ae14370dfdaab906e50d0552c90119 - path: results/reports/samtools/test/test.md.cram.stats # conda changes md5sums for test - path: results/reports/samtools/test/test.recal.cram.stats From 852d1510f38553ed17c147550de696dead4544fe Mon Sep 17 00:00:00 2001 From: FriederikeHanssen Date: Wed, 13 Sep 2023 09:57:07 +0000 Subject: [PATCH 2/2] update changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 7c7ccf00eb..5fca54ccbc 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -71,6 +71,7 @@ Rapaselet is a delta formed by the Rapaätno river between the Bielloriehppe mas - [#1225](https://github.com/nf-core/sarek/pull/1225) - Better test coverage for all tests - [#1227](https://github.com/nf-core/sarek/pull/1227) - Lint warning fix - [#1229](https://github.com/nf-core/sarek/pull/1229) - Fix md5sum for gatk4_spark tests +- [#1230](https://github.com/nf-core/sarek/pull/1230) - Fix md5sum for sentieon aligner tests ### Dependencies