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This is my first time using nf-core/viralrecon. When trying to run the command with my data I got the error
-- Check script '/home/joancuesta/.nextflow/assets/nf-core/viralrecon/./workflows/illumina.nf' at line: 26 or see '.nextflow.log' file for more details
Could you please help me?
Command used and terminal output
Command used:nextflow run nf-core/viralrecon --input rv3471.csv --platform illumina --protocol metagenomic --outdir /home/joancuesta/quasispecies/3471 --fasta KX148107.fasta --skip_nextclade -profile dockerTerminal output:N E X T F L O W ~ version 23.10.1Launching `https://github.com/nf-core/viralrecon` [drunk_laplace] DSL2 - revision: 3731dd3a32 [master]------------------------------------------------------ ,--./,-. ___ __ __ __ ___ /,-._.--~' |\ | |__ __ / ` / \ |__) |__ } { | \| | \__, \__/ | \ |___ \`-._,-`-, `._,._,' nf-core/viralrecon v2.6.0-g3731dd3------------------------------------------------------Core Nextflow options revision : master runName : drunk_laplace containerEngine: docker launchDir : /home/joancuesta/quasispecies workDir : /home/joancuesta/quasispecies/work projectDir : /home/joancuesta/.nextflow/assets/nf-core/viralrecon userName : joancuesta profile : docker configFiles : /home/joancuesta/.nextflow/assets/nf-core/viralrecon/nextflow.configInput/output options input : rv3471.csv platform : illumina protocol : metagenomic outdir : /home/joancuesta/quasispecies/3471Reference genome options fasta : KX148107.fastaNanopore/Illumina options skip_nextclade : true!! Only displaying parameters that differ from the pipeline defaults !!------------------------------------------------------If you use nf-core/viralrecon for your analysis please cite:* The pipeline https://doi.org/10.5281/zenodo.3901628* The nf-core framework https://doi.org/10.1038/s41587-020-0439-x* Software dependencies https://github.com/nf-core/viralrecon/blob/master/CITATIONS.md------------------------------------------------------ERROR ~ Access Denied (Service: Amazon S3; Status Code: 403; Error Code: AccessDenied; Request ID: JPCTWMMFEEJEYMKA; S3 Extended Request ID: QYKOf7UzK0VOFoNXCpuPA6erH7Zh2gzklLkmtx3scNhAuIN0sEU4aipQrqACygaLEgk0A2ZTJZE=; Proxy: null) -- Check script '/home/joancuesta/.nextflow/assets/nf-core/viralrecon/./workflows/illumina.nf' at line: 26 or see '.nextflow.log' file for more details
Nextflow version (23.10.1)
Hardware (x86_64)
Executor (awsbatch)
Container engine: (Docker)
OS (Linux #61~20.04.1-Ubuntu)
Version of nf-core/viralrecon (v2.6.0-g3731dd3)
The text was updated successfully, but these errors were encountered:
Description of the bug
This is my first time using nf-core/viralrecon. When trying to run the command with my data I got the error
-- Check script '/home/joancuesta/.nextflow/assets/nf-core/viralrecon/./workflows/illumina.nf' at line: 26 or see '.nextflow.log' file for more details
Could you please help me?
Command used and terminal output
Relevant files
.nextflow.log
System information
Nextflow version (23.10.1)
Hardware (x86_64)
Executor (awsbatch)
Container engine: (Docker)
OS (Linux #61~20.04.1-Ubuntu)
Version of nf-core/viralrecon (v2.6.0-g3731dd3)
The text was updated successfully, but these errors were encountered: