Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

convert_data.py and convert_dict.py output filenames don't match #1

Open
ericearl opened this issue May 16, 2023 · 0 comments
Open

Comments

@ericearl
Copy link
Contributor

There needs to be a provided rename script which will require either two dictionaries (form legend names versus data download names with desired output name) or user input per TSV/JSON pair. I like the idea of user input guided renaming with something like simple-term-menu:

https://github.com/IngoMeyer441/simple-term-menu

I imagine the guided experience of something like:

  1. "Select a JSON and TSV to pair and rename:" They are provided first with the TSV list and select, then with the JSON list and select.
  2. "What is the correct snakecase name for this data and dictionary pair?" They are offered a chance to type in the rename and then that rename is applied to both the TSV and the JSON so they are paired in the phenotype folder.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant