MAINT: Revision of GHA migration #34
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Unit and integration tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - maint/* | |
| pull_request: | |
| branches: | |
| - main | |
| - maint/* | |
| # Allow job to be triggered manually from GitHub interface | |
| workflow_dispatch: | |
| defaults: | |
| run: | |
| shell: bash | |
| # Force tox and pytest to use color | |
| env: | |
| FORCE_COLOR: true | |
| TEST_DATA_HOME: /home/runner/eddymotion-tests/ | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| jobs: | |
| test: | |
| runs-on: 'ubuntu-latest' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| fetch-depth: 0 | |
| - uses: mamba-org/setup-micromamba@v1.9.0 | |
| with: | |
| environment-file: env.yml | |
| init-shell: bash | |
| cache-environment: true | |
| cache-environment-key: environment-v1 | |
| cache-downloads: false | |
| post-cleanup: 'none' | |
| generate-run-shell: true | |
| # https://github.com/mamba-org/setup-micromamba/issues/225 | |
| micromamba-version: 1.5.10-0 | |
| micromamba-binary-path: /home/runner/micromamba-bin-versioned/micromamba | |
| - uses: actions/cache/restore@v4 | |
| with: | |
| path: /home/runner/eddymotion-tests/ | |
| key: data-v0 | |
| - name: Get test data with DataLad | |
| shell: micromamba-shell {0} | |
| run: | | |
| if [[ ! -d "${TEST_DATA_HOME}" ]]; then | |
| datalad install -rg --source=https://gin.g-node.org/nipreps-data/tests-eddymotion.git ${TEST_DATA_HOME} | |
| else | |
| cd ${TEST_DATA_HOME} | |
| datalad update --merge -r . | |
| datalad get -r -J4 * | |
| fi | |
| - uses: actions/cache/save@v4 | |
| with: | |
| path: /home/runner/eddymotion-tests/ | |
| key: data-v0 | |
| - name: Show tox config | |
| shell: micromamba-shell {0} | |
| run: tox c | |
| - name: Run tox | |
| shell: micromamba-shell {0} | |
| run: tox -v --exit-and-dump-after 1200 | |
| - uses: codecov/codecov-action@v4 | |
| if: ${{ always() }} | |
| with: | |
| files: cov.xml | |
| token: ${{ secrets.CODECOV_TOKEN }} |