README.rst

Pydra task package for mrtrix3

This package contains a collection of Pydra task interfaces for the mrtrix3 toolkit.

Generation of interfaces

Task interfaces are automatically generated from the MRtrix3 source code using the generate.py script, with the exception of a few interfaces that are manually written.

Developer installation

First install the package in editable mode

$ pip install -e .[test]

Then generate the automic interfaces using

$ python3 generate.py

This package comes with a battery of automatically generated test modules. They can be launched using

$ pytest --doctest-modules pydra/tasks/*