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DESCRIPTION
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DESCRIPTION
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Package: rxode2
Version: 2.0.13.9000
Title: Facilities for Simulating from ODE-Based Models
Authors@R: c(
person("Matthew L.","Fidler",
role = c("aut", "cre"), email = "matthew.fidler@gmail.com",
comment=c(ORCID="0000-0001-8538-6691")),
person("Melissa", "Hallow",
role = "aut", email = "hallowkm@uga.edu"),
person("Wenping", "Wang",
role = c("aut"), email = "wwang8198@gmail.com"),
person("Zufar", "Mulyukov", role="ctb", email="zufar.mulyukov@novartis.com"),
person("Alan", "Hindmarsh",role="ctb"),
person("Arun", "Srinivasan", role="ctb", email="arunkumar.sriniv@gmail.com"),
person("Awad H.", "Al-Mohy",role="ctb"),
person("Cleve", "Moler", role="ctb"),
person("Drew", "Schmidt", role="ctb"),
person("Ernst", "Hairer", role="ctb"),
person("Gerhard", "Wanner", role="ctb"),
person("Gilbert", "Stewart", role="ctb"),
person("Hadley", "Wickham", role="ctb"),
person("Jack", "Dongarra", role="ctb"),
person("Jim", "Bunch", role="ctb"),
person("Linda", "Petzold", role="ctb"),
person("Martin", "Maechler", role="ctb"),
person("Matt", "Dowle", role="ctb", email="mattjdowle@gmail.com"),
person("Matteo", "Fasiolo", email = "matteo.fasiolo@gmail.com", role = "ctb"),
person("Nicholas J.", "Higham",role="ctb"),
person("Roger B.", "Sidje", role="ctb"),
person("Simon", "Frost", role="ctb"),
person("Yu", "Feng", role="ctb"),
person("Bill", "Denney", email="wdenney@humanpredictions.com", role="ctb", comment=c(ORCID="0000-0002-5759-428X"))
)
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Depends:
R (>= 4.0.0)
Suggests:
Matrix,
DT,
covr,
crayon,
curl,
digest,
dplyr (>= 0.8.0),
ggrepel,
gridExtra,
htmltools,
knitr,
learnr,
microbenchmark,
nlme,
remotes,
rlang,
rmarkdown,
scales,
shiny,
stringi,
symengine,
testthat,
tidyr,
usethis,
vdiffr (>= 1.0),
withr,
xgxr,
pillar,
tibble,
units (>= 0.6-0),
rsconnect,
devtools,
patchwork,
nlmixr2data (>= 2.0.8),
lifecycle,
kableExtra
Imports:
PreciseSums (>= 0.3),
Rcpp (>= 0.12.3),
backports,
cli (>= 2.0.0),
checkmate,
ggplot2,
inline,
lotri (>= 0.4.0),
magrittr,
memoise,
methods,
rex,
sys,
tools,
utils,
rxode2ll(>= 2.0.9),
rxode2et (>= 2.0.9),
rxode2parse (> 2.0.16),
rxode2random (> 2.0.11),
data.table (>= 1.12.4),
qs
Description: Facilities for running simulations from ordinary
differential equation ('ODE') models, such as pharmacometrics and other
compartmental models. A compilation manager translates the ODE model
into C, compiles it, and dynamically loads the object code into R for
improved computational efficiency. An event table object facilitates
the specification of complex dosing regimens (optional) and sampling
schedules. NB: The use of this package requires both C and
Fortran compilers, for details on their use with R please see
Section 6.3, Appendix A, and Appendix D in the "R Administration and
Installation" manual. Also the code is mostly released under GPL. The
'VODE' and 'LSODA' are in the public domain. The information is available
in the inst/COPYRIGHTS.
BugReports: https://github.com/nlmixr2/rxode2/issues/
NeedsCompilation: yes
VignetteBuilder: knitr
License: GPL (>= 3)
URL: https://nlmixr2.github.io/rxode2/,
https://github.com/nlmixr2/rxode2/
RoxygenNote: 7.2.3
Biarch: true
LinkingTo:
rxode2parse (>= 2.0.12),
rxode2random,
PreciseSums (>= 0.3),
Rcpp,
RcppArmadillo (>= 0.9.300.2.0),
BH
Encoding: UTF-8
LazyData: true
Language: en-US
Roxygen: list(markdown = TRUE)
Config/testthat/edition: 3