start_service.cwl

#!/usr/bin/env cwl-runner
#
# Starts submission annotation service
#
cwlVersion: v1.0
class: CommandLineTool
baseCommand: python3

inputs:
  - id: submissionid
    type: int
  - id: docker_repository
    type: string
  - id: docker_digest
    type: string
  - id: docker_registry
    type: string
  - id: docker_authentication
    type: string
  - id: status
    type: boolean?
  - id: docker_script
    type: File

arguments: 
  - valueFrom: $(inputs.docker_script.path)
  - valueFrom: $(inputs.submissionid)
    prefix: -s
  - valueFrom: $(inputs.docker_repository)
    prefix: -p
  - valueFrom: $(inputs.docker_digest)
    prefix: -d

requirements:
  - class: InitialWorkDirRequirement
    listing:
      - $(inputs.docker_script)
      - entryname: .docker/config.json
        entry: |
          {"auths": {"$(inputs.docker_registry)": {"auth": "$(inputs.docker_authentication)"}}}
  - class: InlineJavascriptRequirement

outputs:
  finished:
    type: boolean
    outputBinding:
      outputEval: $( true )