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where is the well-trained model for basecalling #44

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lvxuan96 opened this issue Jul 15, 2020 · 2 comments
Open

where is the well-trained model for basecalling #44

lvxuan96 opened this issue Jul 15, 2020 · 2 comments

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@lvxuan96
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Is https://github.com/nmiculinic/minion-basecaller/blob/master/mincall/example/example.model a well-trained model

@nmiculinic
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I don't think so...

well, I don't remember anymore. The project results were comparable to other basecallers at the time, thus we haven't prepared necessary steps to package this as off-the-shelf basecaller.

@nmiculinic
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I've skimmed through master thesis, and there I mention b50 model...I'd name the file b50 not example if that's the case. example.model is probably some small single layer RNN for quick pipeline testing.

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