ERROR Binaries

[Beta-INC]

Hi

I try to analyze a sample, but when running the basic option of tormes (-m and -o) it indicates the following error:
grep: /home/dell/miniconda3/envs/tormes-1.2.1/bin/../files/config_file.txt: No existe el archivo o el directorio

Thanks for using tormes version 1.2.1
Let's check that all software are properly installed and all the data included in the metadata file is correct

/home/dell/Documentos/Secuencias/Genomasvolcan/PB-report/metadata.R: línea 1: error sintáctico cerca del elemento inesperado (' /home/dell/Documentos/Secuencias/Genomasvolcan/PB-report/metadata.R: línea 1: metadata=read.table("/home/dell/Documentos/Secuencias/Genomasvolcan/PB-report/metadata.tmp", header = T, sep = "\t", dec = ".")'
cut: /home/dell/Documentos/Secuencias/Genomasvolcan/PB-report/reads.tmp: No existe el archivo o el directorio
Software: found

ERROR: Binaries for MAUVE not found! Please check if:
* Binaries are not installed
* Binaries are installed but the path in /home/dell/miniconda3/envs/tormes-1.2.1/bin/../files/config_file.txt is incorrect

Can you help me??
Thanks :)

[nmquijada]

Hi!

It looks that your tormes config_file.txt is missing. Did you run tormes-setup after installing tormes with conda?
We are transitioning tormes to version 1.3.0, that will (hopely) be ready in a few days. Therefore, if you performed the installation properly as it says in the instructions (https://github.com/nmquijada/tormes#installation), I would suggest you to wait for the newer version, as the oldest ones won't be maintained.
I will keep you updated ;)

Thanks!

[nmquijada]

Hi again,

We just released the v1.3.0 of TORMES :)

Would you mind to uninstall your former version and try out the new one?
For doing so:

#UNINSTALLING
conda env remove -n tormes-1.2.1
conda clean --all

#INSTALLING
wget https://anaconda.org/nmquijada/tormes-1.3.0/2021.06.08.113021/download/tormes-1.3.0.yml
conda env create -n tormes-1.3.0 --file tormes-1.3.0.yml
conda activate tormes-1.3.0
tormes-setup

Thanks!
Narciso

[Beta-INC]

thank you very much for your help!!! I have not had the opportunity to work with that, but I will do it shortly and I will inform you how it went. Greetings Betsy <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> Libre de virus. www.avast.com <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> El mar, 8 de jun. de 2021 a la(s) 08:19, Narciso Martin Quijada ( ***@***.***) escribió:

…

Hi again, We just released the v1.3.0 of TORMES :) Would you mind to uninstall your former version and try out the new one? For doing so: #UNINSTALLING conda env remove -n tormes-1.2.1 conda clean --all #INSTALLING wget https://anaconda.org/nmquijada/tormes-1.3.0/2021.06.08.113021/download/tormes-1.3.0.yml conda env create -n tormes-1.3.0 --file tormes-1.3.0.yml conda activate tormes-1.3.0 tormes-setup Thanks! Narciso — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#39 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AUJRVCTST2OXNMPK52MIYBLTRYKETANCNFSM453RVQ6Q> .