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Using mamba
We have experienced long times while solving environment by using conda in some cases. If this happens to you, you can install the environment by using Mamba.
To install mamba, please make sure you do so in the "base" environment, as its installation in any other environment is not supported:
conda install mamba -n base -c conda-forge
Once you have mamba installed run:
$ conda update -n base -c conda-forge conda -y
conda env create -n tormes-1.3.0 --file tormes-1.3.0.yml
Collecting package metadata (current_repodata.json): done
Solving environment: |
Warning: 2 possible package resolutions (only showing differing packages):
==> WARNING: A newer version of conda exists. <==
current version: 22.9.0
latest version: 23.3.1
Please update conda by running
Package Plan
environment location: /home/hk09/anaconda3
added / updated specs:
- conda
The following packages will be downloaded:
The following packages will be UPDATED:
bedtools 2.30.0-h468198e_3 --> 2.31.0-h468198e_0 None
diff-match-patch 20200713-pyh9f0ad1d_0 --> 20230430-pyhd8ed1ab_0 None
infernal 1.1.4-pl5321hec16e2b_1 --> 1.1.4-pl5321hec16e2b_2 None
Downloading and Extracting Packages
infernal-1.1.4 | 3.4 MB | ############################################################################# | 100%
bedtools-2.31.0 | 1.5 MB | ############################################################################# | 100%
diff-match-patch-202 | 40 KB | ############################################################################# | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
Retrieving notices: ...working... done
-bash: export:
=': not a valid identifier -bash: export:
D:wgsrawGTDBTk-mastergtdbtktestsdata=': not a valid identifierCollecting package metadata (repodata.json): done
Solving environment: - Killed
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