New Bridge Documentation

[shawntanzk]

This is a ticket to document what I am doing so we remember

• Add ok terms from expert curated CCF_to_UBERON list to new bridge template as equivalent
• Go through expert curated CCF_to_UBERON list manually and add expert mapped terms
  • For terms that are 'add layer' or I am unsure, I use subclass part of instead of equivalent
• Build template to new bridge, merge mba and dmba bridge, run robot diff on them
• Manually go through robot diff and add back terms that are not flagged as nok or verify in expert list back into template, annotating source as Chris Mungall for those
• Compare fixed bridge file from previous to original bridge file, and for axioms that match, annotate source as Chris Mungall
• Add new terms needed

[shawntanzk]

Looks like everything that was removed from original bridge file was rightly removed - they were either nok or there was no mappings to them yet.
For safety I'd rather not add back verify too - do you agree with this @patrick-lloyd-ray

[shawntanzk]

New bridge files: https://github.com/obophenotype/ABA_Uberon/tree/new_bridge/src/ontology/new-bridges
Note: they have extra labels on them (can remove, there for ease for me in template)

[patrick-lloyd-ray]

For safety I'd rather not add back verify too

Yes, that's a good idea.