Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Generate ssso-merged-uberon.obo #73

Open
fbastian opened this issue Feb 12, 2021 · 0 comments
Open

Generate ssso-merged-uberon.obo #73

fbastian opened this issue Feb 12, 2021 · 0 comments

Comments

@fbastian
Copy link
Contributor

Many ontologies in the repository have been updated. I tried to generate the merged composite ontology myself, using the Makefile and owltools. Everything works fine, except that I miss the core UBERON life stages (e.g., class declaration for UBERON:0004730, etc).

Problems:
http://purl.obolibrary.org/obo/uberon/subsets/life-stages-minimal.obo is not accessible (error NoSuchKeyThe specified key does not exist.)
And anyway, I guess this life-stages-minimal.obo already contains the xrefs to species-specific life stage ontologies.

ping @cmungall: can you please tell me what am I missing to get the core UBERON classes declared in the merged life stage ontology?
(Note: see this PR for the updates: #72
But also I have a locally modified FBdv version that I would like to merge, so I'd like to do the merge myself)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant