diff --git a/human-pr-mapping.ttl b/human-pr-mapping.ttl index 577db76..3f65d53 100644 --- a/human-pr-mapping.ttl +++ b/human-pr-mapping.ttl @@ -2187,9 +2187,6 @@ PR:000009698 semapv:crossSpeciesExactMatch PR:000029668 semapv:crossSpeciesExactMatch PR:P50479 . -PR:000014191 semapv:crossSpeciesExactMatch - PR:P30050 . - PR:000001344 semapv:crossSpeciesExactMatch PR:O14638 . @@ -2571,9 +2568,6 @@ PR:000007759 semapv:crossSpeciesExactMatch PR:000012252 semapv:crossSpeciesExactMatch PR:P19021 . -PR:000030473 semapv:crossSpeciesExactMatch - PR:Q9UHN6 . - PR:000004607 semapv:crossSpeciesExactMatch PR:O60512 . @@ -2832,9 +2826,6 @@ PR:000004596 semapv:crossSpeciesExactMatch PR:000007271 semapv:crossSpeciesExactMatch PR:Q9UBQ6 . -PR:000013872 semapv:crossSpeciesExactMatch - PR:Q6UW15 . - PR:000009020 semapv:crossSpeciesExactMatch PR:Q9NX62 . @@ -3525,9 +3516,6 @@ PR:000013082 semapv:crossSpeciesExactMatch PR:000014713 semapv:crossSpeciesExactMatch PR:Q9UJW9 . -PR:000014230 semapv:crossSpeciesExactMatch - PR:P46777 . - PR:000012481 semapv:crossSpeciesExactMatch PR:O43924 . @@ -5190,6 +5178,9 @@ PR:000008013 semapv:crossSpeciesExactMatch PR:000011638 semapv:crossSpeciesExactMatch PR:P47874 . +PR:000005663 semapv:crossSpeciesExactMatch + PR:P26441 . + PR:000016357 semapv:crossSpeciesExactMatch PR:Q9GZM7 . @@ -10557,9 +10548,6 @@ PR:000005796 semapv:crossSpeciesExactMatch PR:000011288 semapv:crossSpeciesExactMatch PR:Q9C002 . -PR:000014264 semapv:crossSpeciesExactMatch - PR:P60866 . - PR:000032485 semapv:crossSpeciesExactMatch PR:P0C7M8 . @@ -10752,9 +10740,6 @@ PR:000014763 semapv:crossSpeciesExactMatch PR:000004886 semapv:crossSpeciesExactMatch PR:Q9BXJ3 . -PR:000014280 semapv:crossSpeciesExactMatch - PR:P46782 . - PR:000006334 semapv:crossSpeciesExactMatch PR:Q9BTE7 . @@ -11037,9 +11022,6 @@ PR:000005102 semapv:crossSpeciesExactMatch PR:000007954 semapv:crossSpeciesExactMatch PR:Q9NZ52 . -PR:000014190 semapv:crossSpeciesExactMatch - PR:P62913 . - PR:000015189 semapv:crossSpeciesExactMatch PR:P31645 . @@ -12000,21 +11982,18 @@ PR:000031960 semapv:crossSpeciesExactMatch PR:000001010 semapv:crossSpeciesExactMatch PR:P38570 . -PR:000007536 semapv:crossSpeciesExactMatch - PR:P62942 . - PR:000008763 semapv:crossSpeciesExactMatch PR:Q8IZT8 . +PR:000007536 semapv:crossSpeciesExactMatch + PR:P62942 . + PR:000011279 semapv:crossSpeciesExactMatch PR:P08949 . PR:000010280 semapv:crossSpeciesExactMatch PR:Q9BTT4 . -PR:000014255 semapv:crossSpeciesExactMatch - PR:P62263 . - PR:000016004 semapv:crossSpeciesExactMatch PR:Q9UHF0 . @@ -13641,12 +13620,12 @@ PR:000013597 semapv:crossSpeciesExactMatch PR:000015346 semapv:crossSpeciesExactMatch PR:P62304 . -PR:000008627 semapv:crossSpeciesExactMatch - PR:Q9P0W2 . - PR:000011371 semapv:crossSpeciesExactMatch PR:Q86SE8 . +PR:000008627 semapv:crossSpeciesExactMatch + PR:Q9P0W2 . + PR:000013120 semapv:crossSpeciesExactMatch PR:Q13522 . @@ -14001,11 +13980,14 @@ PR:000029649 semapv:crossSpeciesExactMatch PR:000031166 semapv:crossSpeciesExactMatch PR:Q96NB1 . +PR:000004295 semapv:crossSpeciesExactMatch + PR:Q96BM9 . + PR:000015803 semapv:crossSpeciesExactMatch PR:Q6ZWJ1 . -PR:000004295 semapv:crossSpeciesExactMatch - PR:Q96BM9 . +PR:000015797 semapv:crossSpeciesExactMatch + PR:Q13190 . PR:000008601 semapv:crossSpeciesExactMatch PR:Q8N257 . diff --git a/pr_slim.obo b/pr_slim.obo index 19984a0..a3b8f77 100644 --- a/pr_slim.obo +++ b/pr_slim.obo @@ -1,12 +1,12 @@ format-version: 1.2 -data-version: pr/obophenotype/releases/2023-10-12/pr_slim.owl +data-version: pr/obophenotype/releases/2024-05-05/pr_slim.owl synonymtypedef: Gene-based "" synonymtypedef: PRO-proteoform-ftid "" synonymtypedef: PRO-proteoform-std "" synonymtypedef: PRO-short-label "" synonymtypedef: PSI-MOD-label "" ontology: pr/obophenotype/pr_slim -property_value: owl:versionInfo "2023-10-12" xsd:string +property_value: owl:versionInfo "2024-05-05" xsd:string [Term] id: BFO:0000019 @@ -44,6 +44,13 @@ namespace: chebi_ontology def: "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances." [] is_a: BFO:0000030 ! object +[Term] +id: CHEBI:30413 +name: heme +namespace: chebi_ontology +def: "A heme is any tetrapyrrolic chelate of iron." [] +is_a: CHEBI:23367 ! molecular entity + [Term] id: CHEBI:33247 name: organic group @@ -51,6 +58,12 @@ namespace: chebi_ontology def: "Any substituent group or skeleton containing carbon." [] is_a: CHEBI:23367 ! molecular entity +[Term] +id: CHEBI:33700 +name: proteinogenic amino-acid residue +namespace: chebi_ontology +is_a: CHEBI:33708 ! amino-acid residue + [Term] id: CHEBI:33708 name: amino-acid residue @@ -67,6 +80,12 @@ namespace: chebi_ontology def: "A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by organyl groups." [] is_a: CHEBI:23367 ! molecular entity +[Term] +id: CHEBI:50347 +name: L-asparagine residue +namespace: chebi_ontology +is_a: CHEBI:33700 ! proteinogenic amino-acid residue + [Term] id: GO:0002185 name: creatine kinase complex @@ -85,8 +104,8 @@ is_a: GO:0002185 ! creatine kinase complex id: GO:0003674 name: molecular_function namespace: molecular_function -def: "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process." [GOC:pdt] -comment: Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex. +def: "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs." [GOC:pdt] +comment: Note that, in addition to forming the root of the molecular function ontology, this term is recommended for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex. synonym: "molecular function" EXACT [] [Term] @@ -115,21 +134,23 @@ is_a: GO:0003674 ! molecular_function [Term] id: GO:0005216 -name: ion channel activity +name: monoatomic ion channel activity namespace: molecular_function -def: "Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size)." [GOC:cy, GOC:mtg_transport, GOC:pr, ISBN:0815340729] +def: "Enables the facilitated diffusion of a monoatomic ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size)." [GOC:cy, GOC:mtg_transport, GOC:pr, ISBN:0815340729] +synonym: "ion channel activity" BROAD [] is_a: GO:0003674 ! molecular_function [Term] id: GO:0005228 -name: intracellular sodium activated potassium channel activity +name: intracellular sodium-activated potassium channel activity namespace: molecular_function def: "Enables the transmembrane transfer of potassium by a channel that opens in response to stimulus by a sodium ion or ions. Transport by a channel involves facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism. Sodium activated potassium channels have distinctive properties, including a large single channel conductance, subconductance states, and a block of single channel currents at positive potentials, similar to inward rectification." [GOC:mtg_transport, PMID:12628167] +synonym: "intracellular sodium activated potassium channel activity" EXACT [] is_a: GO:0003674 ! molecular_function [Term] id: GO:0005244 -name: voltage-gated ion channel activity +name: voltage-gated monoatomic ion channel activity namespace: molecular_function def: "Enables the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded." [GOC:mtg_transport, ISBN:0198506732, ISBN:0815340729] synonym: "voltage gated ion channel activity" EXACT [] @@ -185,8 +206,8 @@ is_a: GO:0008150 ! biological_process id: GO:0008150 name: biological_process namespace: biological_process -def: "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." [GOC:pdt] -comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. +def: "A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." [GOC:pdt] +comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. synonym: "biological process" EXACT [] [Term] @@ -214,7 +235,7 @@ is_a: GO:0003674 ! molecular_function [Term] id: GO:0015276 -name: ligand-gated ion channel activity +name: ligand-gated monoatomic ion channel activity namespace: molecular_function def: "Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts." [GOC:mtg_transport, ISBN:0815340729] synonym: "ionotropic receptor activity" NARROW [GOC:bf, GOC:sart] @@ -265,17 +286,38 @@ is_a: GO:0032991 ! protein-containing complex id: GO:1990265 name: platelet-derived growth factor complex namespace: cellular_component -def: "A protein complex consisting of two chains of platelet-derived growth factor (PDGF) subunits. PDGF dimers bind to PDGF receptors in the plasma membrane and induce receptor dimerisation and activation. PDGFs are involved in a wide variety of signalling processes. PDGFs are found in all vertebrates where at least 2 different chains (A and B) exist. In human (and other mammals), four types of PDGF chains (A, B, C, and D) are known which form five different dimers (AA, AB, BB, CC and DD)." [GOC:bhm, PMID:11331882] +def: "A protein complex consisting of two chains of platelet-derived growth factor (PDGF) subunits. PDGF dimers bind to PDGF receptors in the plasma membrane and induce receptor dimerization and activation. PDGFs are involved in a wide variety of signaling processes. PDGFs are found in all vertebrates where at least 2 different chains (A and B) exist. In human (and other mammals), four types of PDGF chains (A, B, C, and D) are known which form five different dimers (AA, AB, BB, CC and DD)." [GOC:bhm, PMID:11331882] comment: An example of this is PDGFA in human (P04085) in PMID:20534510 (inferred from direct assay). synonym: "PDGF complex" RELATED [] is_a: GO:0032991 ! protein-containing complex +[Term] +id: MOD:00167 +name: N-asparaginyl-glycosylphosphatidylinositolethanolamine +namespace: PSI-MOD +synonym: "GPIAsn" EXACT PSI-MOD-label [] +is_a: MOD:00764 ! glycoconjugated residue +is_a: MOD:00903 ! modified L-asparagine residue + [Term] id: MOD:00764 name: glycoconjugated residue namespace: PSI-MOD is_a: PR:000025513 ! modified amino-acid residue +[Term] +id: MOD:00818 +name: glycosylphosphatidylinositolated residue +namespace: PSI-MOD +synonym: "GPIRes" EXACT PSI-MOD-label [] +is_a: MOD:00764 ! glycoconjugated residue + +[Term] +id: MOD:00903 +name: modified L-asparagine residue +namespace: PSI-MOD +is_a: PR:000025513 ! modified amino-acid residue + [Term] id: MOD:01148 name: ubiquitinylated lysine @@ -349,7 +391,7 @@ comment: The definition above excludes protein complexes, which some also consid synonym: "native protein" NARROW [IEDB:BP] synonym: "natural protein" EXACT [PRO:DAN] is_a: PR:000018263 ! amino acid chain -is_a: PR:000050567 ! protein-containing material entity +is_a: PR:000064867 ! protein-containing molecular entity intersection_of: PR:000018263 ! amino acid chain intersection_of: has_gene_template SO:0000704 ! gene intersection_of: output_of GO:0006412 ! translation @@ -1894,15 +1936,15 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9NZC7 id: PR:000001041 name: Na(+)/H(+) exchange regulatory cofactor NHE-RF1 namespace: protein -def: "A Na(+)/H(+) exchange regulatory cofactor with ERM-binding domain that is a translation product of the human SLC9A3R1 gene or a 1:1 ortholog thereof. It contains two copies of the PDZ domain at the N terminus and an EBP50 domain at the C-terminus. The latter allows interaction with FERM domains, resulting in the activation of ERM proteins (PR:000001030), with subsequent cytoskeletal modulation and cellular growth control." [PRO:CNA] +def: "A Na(+)/H(+) exchange regulatory cofactor with ERM-binding domain that is a translation product of the human NHERF1 gene or a 1:1 ortholog thereof. It contains two copies of the PDZ domain at the N terminus and an EBP50 domain at the C-terminus. The latter allows interaction with FERM domains, resulting in the activation of ERM proteins (PR:000001030), with subsequent cytoskeletal modulation and cellular growth control." [PRO:CNA] comment: Category=gene. synonym: "EBP50" EXACT [] synonym: "ezrin-radixin-moesin-binding phosphoprotein 50" EXACT [] synonym: "NHERF" RELATED Gene-based [] synonym: "NHERF-1" EXACT [] -synonym: "NHERF1" RELATED Gene-based [] +synonym: "NHERF1" EXACT PRO-short-label [PRO:DNx] synonym: "regulatory cofactor of Na(+)/H(+) exchanger" EXACT [] -synonym: "SLC9A3R1" EXACT PRO-short-label [PRO:DNx] +synonym: "SLC9A3R1" RELATED Gene-based [] synonym: "sodium-hydrogen exchanger regulatory factor 1" EXACT [] synonym: "solute carrier family 9 isoform A3 regulatory factor 1" EXACT [] is_a: PR:000001043 ! Na(+)/H(+) exchange regulatory cofactor with ERM-binding domain @@ -2054,7 +2096,6 @@ def: "A protein that is a T cell-derived cytokine that may play an important rol comment: Category=family. synonym: "fam:IL-17" EXACT PRO-short-label [PRO:DAN] synonym: "IL17" EXACT [] -xref: PANTHER:PTHR21295 xref: PIRSF:PIRSF003430 is_a: PR:000000001 ! protein @@ -4059,6 +4100,8 @@ synonym: "CD271" EXACT [] synonym: "gp80-LNGFR" EXACT [] synonym: "low affinity neurotrophin receptor p75NTR" EXACT [] synonym: "low-affinity nerve growth factor receptor" EXACT [] +synonym: "low-affinity nerve growth factor receptor p75NGFR" EXACT [] +synonym: "low-affinity nerve growth factor receptor p75NGR" EXACT [] synonym: "NGF receptor" EXACT [] synonym: "NGFR" EXACT PRO-short-label [PRO:DNx] synonym: "p75 ICD" EXACT [] @@ -4518,8 +4561,8 @@ is_a: PR:000001362 ! interferon lambda id: PR:000001471 name: interleukin-10 namespace: protein -def: "A class 2 cytokine, IL-10 type that is a translation product of the human IL10 gene or a 1:1 ortholog thereof. Active interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells. Structurally, IL-10 is a protein of about 160 amino acids that contains four conserved cysteines involved in disulfide bonds." [PANTHER:PTHR11585\:SF1, PRO:JAN] -comment: Category=gene. +def: "A class 2 cytokine, IL-10 type that is a translation product of the human IL10 gene or a 1:1 ortholog thereof." [PRO:JAN] +comment: Category=gene. Note: Active interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells. Structurally, IL-10 is a protein of about 160 amino acids that contains four conserved cysteines involved in disulfide bonds. synonym: "CSIF" EXACT [] synonym: "cytokine synthesis inhibitory factor" EXACT [] synonym: "IL-10" EXACT [] @@ -5135,7 +5178,6 @@ name: prominin namespace: protein def: "A protein with core architecture consisting of one Prominin (Pfam:PF05478) domain. The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and human prominin and prominin-like 1 are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain." [InterPro:IPR008795, PMID:11467842] comment: Category=family. -xref: PANTHER:PTHR22730 xref: PIRSF:PIRSF017831 is_a: PR:000000001 ! protein @@ -7879,6 +7921,61 @@ synonym: "XCL1" EXACT PRO-short-label [PRO:DNx] is_a: PR:000002059 ! lymphotactin-like chemokine property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P47992 +[Term] +id: PR:000002146 +name: CD14 molecule cleaved 1 soluble form +namespace: protein +def: "A CD14 molecule, signal peptide removed form that lacks the GPI-anchor and has been processed by proteolytic cleavage to yield the N-terminal domain with extra C-terminal residues as compared to cleaved 2 form." [PMID:7519994] +comment: Category=modification. +synonym: "CD14/Clv:1/soluble" EXACT PRO-short-label [PRO:DNx] +synonym: "monocyte differentiation antigen CD14 isoform 1 cleaved 1" EXACT [] +synonym: "Monocyte differentiation antigen CD14, urinary form" RELATED [] +synonym: "sCD14 56kd form" EXACT [] +synonym: "sCD14 beta" EXACT [PMID:7522157] +synonym: "sCD14 high M(r) form" EXACT [] +synonym: "uCD14" BROAD [PMID:7519994] +is_a: PR:000018264 ! proteolytic cleavage product +is_a: PR:000018574 ! CD14 molecule, signal peptide removed form +relationship: lacks_part MOD:00818 ! glycosylphosphatidylinositolated residue +relationship: output_of GO:0016485 ! protein processing + +[Term] +id: PR:000002147 +name: CD14 molecule cleaved 2 soluble form +namespace: protein +def: "A CD14 molecule cleaved 2 that lacks the GPI-anchor." [PMID:2779588] +comment: Category=modification. Note: This form appears to derive from release of the GPI-anchored form, mCD14. +synonym: "CD14 molecule cleaved 2" BROAD [PRO:CNA] +synonym: "CD14/Clv:2/soluble" EXACT PRO-short-label [PRO:DNx] +synonym: "monocyte differentiation antigen CD14 isoform 1 cleaved 2" EXACT [] +synonym: "sCD14 48kd form" EXACT [] +synonym: "sCD14 alpha" EXACT [PMID:7522157] +synonym: "sCD14 C form" EXACT [PMID:1880416] +synonym: "sCD14 low M(r) form" EXACT [] +synonym: "Secreted form of CD14" EXACT [Reactome:R-HSA-166025] +synonym: "uCD14" BROAD [PRO:DNx] +is_a: PR:000036848 ! CD14 molecule cleaved 2 +intersection_of: PR:000036848 ! CD14 molecule cleaved 2 +intersection_of: lacks_part MOD:00818 ! glycosylphosphatidylinositolated residue +relationship: lacks_part MOD:00818 ! glycosylphosphatidylinositolated residue + +[Term] +id: PR:000002149 +name: CD14 molecule cleaved 2 GPI-anchored form +namespace: protein +def: "A CD14 molecule cleaved 2 that is the mature membrane-bound form of this protein. UniProtKB:P08571, 20-345, Asn-345, MOD:00167." [PMID:3385210, PRO:CNA] +comment: Category=modification. +synonym: "CD14 molecule cleaved and GPI-anchored 1" EXACT [PRO:CNA] +synonym: "CD14/Clv:2/anchored" EXACT PRO-short-label [PRO:DNx] +synonym: "GPI-anchored form of CD14" EXACT [Reactome:R-HSA-166033] +synonym: "mCD14" RELATED [] +synonym: "monocyte differentiation antigen CD14 isoform 1 cleaved and GPI-anchored 1" EXACT [] +synonym: "Monocyte differentiation antigen CD14, membrane-bound form" EXACT [] +is_a: PR:000036848 ! CD14 molecule cleaved 2 +intersection_of: PR:000036848 ! CD14 molecule cleaved 2 +intersection_of: has_part MOD:00167 ! N-asparaginyl-glycosylphosphatidylinositolethanolamine +relationship: has_part MOD:00167 ! N-asparaginyl-glycosylphosphatidylinositolethanolamine + [Term] id: PR:000002156 name: NAD(P)(+)--arginine ADP-ribosyltransferase @@ -8479,9 +8576,8 @@ is_a: PR:000000001 ! protein id: PR:000003112 name: NFAT protein namespace: protein -def: "A protein that contains a Rel homology domain (RHD) (Pfam:PF00554) followed by an IPT/TIG domain (Pfam:PF01833)." [PANTHER:PTHR12533] +def: "A protein that contains a Rel homology domain (RHD) (Pfam:PF00554) followed by an IPT/TIG domain (Pfam:PF01833)." [PRO:WCB] comment: Category=family. -xref: PANTHER:PTHR12533 is_a: PR:000000001 ! protein [Term] @@ -9211,7 +9307,6 @@ name: Hsp70 family chaperone namespace: protein def: "A protein that is a stand alone version of the Hsp70 protein (Pfam:PF00012) domain, which comprises two major regions: an N-terminal ATP-binding domain and a C-terminal substrate-binding domain." [Pfam:PF00012, PRO:CNA] comment: Category=family. -xref: PANTHER:PTHR19375 is_a: PR:000000001 ! protein [Term] @@ -10457,7 +10552,7 @@ name: all-trans-retinol dehydrogenase [NAD(+)] ADH4 namespace: protein def: "A protein that is a translation product of the human ADH4 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. -synonym: "ADH2" EXACT [] +synonym: "ADH2" RELATED Gene-based [] synonym: "ADH4" EXACT PRO-short-label [PRO:DNx] synonym: "alcohol dehydrogenase 4" EXACT [] synonym: "alcohol dehydrogenase class II" EXACT [] @@ -11245,16 +11340,16 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:O94788 [Term] id: PR:000003922 -name: aldehyde dehydrogenase family 1 member A3 +name: retinaldehyde dehydrogenase 3 namespace: protein def: "A protein that is a translation product of the human ALDH1A3 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "aldehyde dehydrogenase 6" EXACT [] +synonym: "aldehyde dehydrogenase family 1 member A3" EXACT [] synonym: "ALDH1A3" EXACT PRO-short-label [PRO:DNx] synonym: "ALDH6" RELATED Gene-based [] synonym: "RALDH-3" EXACT [] synonym: "RalDH3" EXACT [] -synonym: "retinaldehyde dehydrogenase 3" EXACT [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P47895 @@ -11325,13 +11420,14 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P51649 [Term] id: PR:000003930 -name: methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial +name: methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial namespace: protein def: "A protein that is a translation product of the human ALDH6A1 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "aldehyde dehydrogenase family 6 member A1" EXACT [] synonym: "ALDH6A1" EXACT PRO-short-label [PRO:DNx] synonym: "malonate-semialdehyde dehydrogenase [acylating]" EXACT [] +synonym: "methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial" EXACT [] synonym: "MMSDH" RELATED Gene-based [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q02252 @@ -18604,6 +18700,7 @@ def: "A protein that is a translation product of the human CISD1 gene or a 1:1 o comment: Category=gene. synonym: "C10orf70" RELATED Gene-based [] synonym: "CISD1" EXACT PRO-short-label [PRO:DNx] +synonym: "cysteine transaminase CISD1" EXACT [] synonym: "D10Ertd214e" RELATED Gene-based [] synonym: "MDS029" RELATED Gene-based [] synonym: "MitoNEET" EXACT [] @@ -19314,6 +19411,16 @@ synonym: "CRIP-1" EXACT [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q96F85 +[Term] +id: PR:000005663 +name: ciliary neurotrophic factor +namespace: protein +def: "A protein that is a translation product of the human CNTF gene or a 1:1 ortholog thereof." [PRO:DNx] +comment: Category=gene. +synonym: "CNTF" EXACT PRO-short-label [PRO:DNx] +is_a: PR:000000001 ! protein +property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P26441 + [Term] id: PR:000005668 name: contactin-3 @@ -20692,6 +20799,8 @@ synonym: "Csfm" RELATED Gene-based [] synonym: "lanimostim" EXACT [] synonym: "M-CSF" EXACT [] synonym: "MCSF" EXACT [] +synonym: "PG-M-CSF" EXACT [] +synonym: "proteoglycan macrophage colony-stimulating factor" EXACT [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P09603 @@ -21877,6 +21986,7 @@ comment: Category=gene. synonym: "BCATE2" RELATED Gene-based [] synonym: "BCKAD-E2" EXACT [] synonym: "BCKADE2" EXACT [] +synonym: "BCKDHE2" RELATED Gene-based [] synonym: "branched-chain alpha-keto acid dehydrogenase complex component E2" EXACT [] synonym: "DBT" EXACT PRO-short-label [PRO:DNx] synonym: "dihydrolipoamide acetyltransferase component of branched-chain alpha-keto acid dehydrogenase complex" EXACT [] @@ -22073,6 +22183,7 @@ synonym: "DCUN1 domain-containing protein 3" EXACT [] synonym: "DCUN1D3" EXACT PRO-short-label [PRO:DNx] synonym: "defective in cullin neddylation protein 1-like protein 3" EXACT [] synonym: "SCCRO3" RELATED Gene-based [] +synonym: "squamous cell carcinoma-related oncogene 3" EXACT [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q8IWE4 @@ -23487,6 +23598,8 @@ def: "A protein that is a translation product of the human DNM1 gene or a 1:1 or comment: Category=gene. synonym: "DNM" RELATED Gene-based [] synonym: "DNM1" EXACT PRO-short-label [PRO:DNx] +synonym: "dynamin" EXACT [] +synonym: "dynamin I" EXACT [] synonym: "Kiaa4093" RELATED Gene-based [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q05193 @@ -24615,7 +24728,7 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q16610 [Term] id: PR:000006882 -name: vesicular, overexpressed in cancer, prosurvival protein 1 +name: WW domain binding protein VOPP1 namespace: protein def: "A protein that is a translation product of the human VOPP1 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. @@ -24625,6 +24738,7 @@ synonym: "EGFR-coamplified and overexpressed protein" EXACT [] synonym: "GASP" RELATED Gene-based [] synonym: "glioblastoma-amplified secreted protein" EXACT [] synonym: "putative NF-kappa-B-activating protein 055N" EXACT [] +synonym: "vesicular, overexpressed in cancer, prosurvival protein 1" EXACT [] synonym: "VOPP1" EXACT PRO-short-label [PRO:DNx] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q96AW1 @@ -25151,13 +25265,15 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9BY44 [Term] id: PR:000006962 -name: translation initiation factor eIF-2B subunit alpha +name: translation initiation factor eIF2B subunit alpha namespace: protein def: "A protein that is a translation product of the human EIF2B1 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "eIF-2B GDP-GTP exchange factor subunit alpha" EXACT [] +synonym: "eIF2B GDP-GTP exchange factor subunit alpha" EXACT [] synonym: "EIF2B1" EXACT PRO-short-label [PRO:DNx] synonym: "EIF2BA" RELATED Gene-based [] +synonym: "translation initiation factor eIF-2B subunit alpha" EXACT [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q14232 @@ -25229,6 +25345,7 @@ comment: Category=gene. synonym: "eIF-2-alpha" EXACT [] synonym: "eIF-2A" RELATED [] synonym: "eIF-2alpha" EXACT [] +synonym: "eIF2-alpha" EXACT [] synonym: "EIF2A" RELATED Gene-based [] synonym: "EIF2S1" EXACT PRO-short-label [PRO:DNx] synonym: "eukaryotic translation initiation factor 2 subunit alpha" EXACT [] @@ -25242,6 +25359,7 @@ namespace: protein def: "A protein that is a translation product of the human EIF2S2 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "eIF-2-beta" EXACT [] +synonym: "eIF2-beta" EXACT [] synonym: "EIF2B" RELATED Gene-based [] synonym: "EIF2S2" EXACT PRO-short-label [PRO:DNx] synonym: "eukaryotic translation initiation factor 2 subunit beta" EXACT [] @@ -27178,13 +27296,15 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9NVQ4 [Term] id: PR:000007329 -name: Fas apoptotic inhibitory molecule 3 +name: immunoglobulin mu Fc receptor namespace: protein def: "A protein that is a translation product of the human FCMR gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "FAIM3" RELATED Gene-based [] +synonym: "Fas apoptotic inhibitory molecule 3" EXACT [] synonym: "FCMR" EXACT PRO-short-label [PRO:DNx] synonym: "IgM Fc fragment receptor" EXACT [] +synonym: "IgM FcR" EXACT [] synonym: "regulator of Fas-induced apoptosis Toso" EXACT [] synonym: "TOSO" RELATED Gene-based [] is_a: PR:000000001 ! protein @@ -29168,7 +29288,7 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q99259 [Term] id: PR:000007790 -name: growth arrest and DNA damage-inducible proteins-interacting protein 1 +name: large ribosomal subunit protein mL64 namespace: protein def: "A protein that is a translation product of the human GADD45GIP1 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. @@ -29177,6 +29297,7 @@ synonym: "CKII beta-associating protein" EXACT [] synonym: "CR6-interacting factor 1" EXACT [] synonym: "CRIF1" EXACT [] synonym: "GADD45GIP1" EXACT PRO-short-label [PRO:DNx] +synonym: "growth arrest and DNA damage-inducible proteins-interacting protein 1" EXACT [] synonym: "MRP-L59" EXACT [] synonym: "MRPL59" RELATED Gene-based [] synonym: "p53-responsive gene 6 protein" EXACT [] @@ -30736,7 +30857,7 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P50148 [Term] id: PR:000008098 -name: receptor of activated protein C kinase 1 +name: small ribosomal subunit protein RACK1 namespace: protein def: "A protein that is a translation product of the human RACK1 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. @@ -30753,6 +30874,7 @@ synonym: "p205" BROAD [PRO:DNx] synonym: "PIG21" RELATED Gene-based [] synonym: "RACK1" EXACT PRO-short-label [PRO:DNx] synonym: "receptor for activated C kinase" EXACT [] +synonym: "receptor of activated protein C kinase 1" EXACT [] synonym: "receptor of activated protein kinase C 1" EXACT [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P63244 @@ -30765,6 +30887,7 @@ def: "A protein that is a translation product of the human GNE gene or a 1:1 ort comment: Category=gene. synonym: "GLCNE" RELATED Gene-based [] synonym: "GNE" EXACT PRO-short-label [PRO:DNx] +synonym: "IBM2" RELATED Gene-based [] synonym: "Uae1" RELATED Gene-based [] synonym: "UDP-GlcNAc-2-epimerase/ManAc kinase" EXACT [] is_a: PR:000000001 ! protein @@ -32484,11 +32607,13 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9P2P5 [Term] id: PR:000008510 -name: hepatocyte cell adhesion molecule +name: hepatic and glial cell adhesion molecule namespace: protein def: "A protein that is a translation product of the human HEPACAM gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "glialCAM" EXACT [] synonym: "HEPACAM" EXACT PRO-short-label [PRO:DNx] +synonym: "hepatocyte cell adhesion molecule" EXACT [] synonym: "protein hepaCAM" EXACT [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q14CZ8 @@ -32741,6 +32866,7 @@ synonym: "homeobox protein HEX" EXACT [] synonym: "homeobox protein PRH" EXACT [] synonym: "PRH" RELATED Gene-based [] synonym: "PRHX" RELATED Gene-based [] +synonym: "proline-rich homeodomain protein" EXACT [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q03014 @@ -32758,10 +32884,12 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q96QV1 [Term] id: PR:000008545 -name: HERV-H LTR-associating protein 3 +name: putative uncharacterized protein ANKRD13C-DT namespace: protein def: "A protein that is a translation product of the human HHLA3 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "ANKRD13C-DT" RELATED Gene-based [] +synonym: "HERV-H LTR-associating protein 3" EXACT [] synonym: "HHLA3" EXACT PRO-short-label [PRO:DNx] synonym: "human endogenous retrovirus-H long terminal repeat-associating protein 3" EXACT [] is_a: PR:000000001 ! protein @@ -34303,6 +34431,7 @@ synonym: "DS1" RELATED Gene-based [] synonym: "ICT1" RELATED Gene-based [] synonym: "MRP-L58" EXACT [] synonym: "MRPL58" EXACT PRO-short-label [PRO:DNx] +synonym: "peptidyl-tRNA hydrolase ICT1, mitochondrial" EXACT [] is_a: PR:000000001 ! protein [Term] @@ -37719,6 +37848,7 @@ namespace: protein def: "A protein that is a translation product of the human LAT gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "36 kDa phospho-tyrosine adapter protein" EXACT [] +synonym: "36 kDa phosphotyrosine adapter protein" EXACT [] synonym: "LAT" EXACT PRO-short-label [PRO:DNx] synonym: "p36-38" EXACT [] synonym: "pp36" EXACT [] @@ -41905,10 +42035,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q6IN84 [Term] id: PR:000010571 -name: 39S ribosomal protein L1, mitochondrial +name: large ribosomal subunit protein uL1m namespace: protein def: "A protein that is a translation product of the human MRPL1 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "39S ribosomal protein L1, mitochondrial" EXACT [] synonym: "BM-022" RELATED Gene-based [] synonym: "L1mt" EXACT [] synonym: "MRP-L1" EXACT [] @@ -41918,10 +42049,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9BYD6 [Term] id: PR:000010572 -name: 39S ribosomal protein L10, mitochondrial +name: large ribosomal subunit protein uL10m namespace: protein def: "A protein that is a translation product of the human MRPL10 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "39S ribosomal protein L10, mitochondrial" EXACT [] synonym: "39S ribosomal protein L8, mitochondrial" EXACT [] synonym: "L10mt" EXACT [] synonym: "L8mt" EXACT [] @@ -41935,10 +42067,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q7Z7H8 [Term] id: PR:000010574 -name: 39S ribosomal protein L12, mitochondrial +name: large ribosomal subunit protein bL12m namespace: protein def: "A protein that is a translation product of the human MRPL12 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "39S ribosomal protein L12, mitochondrial" EXACT [] synonym: "5c5-2" EXACT [] synonym: "L12mt" EXACT [] synonym: "MRP-L12" EXACT [] @@ -41950,10 +42083,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P52815 [Term] id: PR:000010576 -name: 39S ribosomal protein L14, mitochondrial +name: large ribosomal subunit protein uL14m namespace: protein def: "A protein that is a translation product of the human MRPL14 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "39S ribosomal protein L14, mitochondrial" EXACT [] synonym: "39S ribosomal protein L32, mitochondrial" RELATED [] synonym: "L14mt" EXACT [] synonym: "L32mt" RELATED [] @@ -41967,10 +42101,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q6P1L8 [Term] id: PR:000010582 -name: 39S ribosomal protein L2, mitochondrial +name: large ribosomal subunit protein uL2m namespace: protein def: "A protein that is a translation product of the human MRPL2 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "39S ribosomal protein L2, mitochondrial" EXACT [] synonym: "CGI-22" RELATED Gene-based [] synonym: "L2mt" EXACT [] synonym: "MRP-L2" EXACT [] @@ -41980,10 +42115,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q5T653 [Term] id: PR:000010584 -name: 39S ribosomal protein L21, mitochondrial +name: large ribosomal subunit protein bL21m namespace: protein def: "A protein that is a translation product of the human MRPL21 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "39S ribosomal protein L21, mitochondrial" EXACT [] synonym: "D9Wsu149" RELATED Gene-based [] synonym: "L21mt" EXACT [] synonym: "MRP-L21" EXACT [] @@ -41993,10 +42129,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q7Z2W9 [Term] id: PR:000010589 -name: 39S ribosomal protein L28, mitochondrial +name: large ribosomal subunit protein bL28m namespace: protein def: "A protein that is a translation product of the human MRPL28 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "39S ribosomal protein L28, mitochondrial" EXACT [] synonym: "L28mt" EXACT [] synonym: "MAAT1" RELATED Gene-based [] synonym: "melanoma antigen p15" EXACT [] @@ -42008,10 +42145,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q13084 [Term] id: PR:000010592 -name: 39S ribosomal protein L32, mitochondrial +name: large ribosomal subunit protein bL32m namespace: protein def: "A protein that is a translation product of the human MRPL32 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "39S ribosomal protein L32, mitochondrial" EXACT [] synonym: "heart-expressed gene 1 protein" EXACT [] synonym: "Heg1" RELATED Gene-based [] synonym: "HSPC283" RELATED Gene-based [] @@ -42023,10 +42161,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9BYC8 [Term] id: PR:000010593 -name: 39S ribosomal protein L33, mitochondrial +name: large ribosomal subunit protein bL33m namespace: protein def: "A protein that is a translation product of the human MRPL33 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "39S ribosomal protein L33, mitochondrial" EXACT [] synonym: "C2orf1" RELATED Gene-based [] synonym: "L33mt" EXACT [] synonym: "MRP-L33" EXACT [] @@ -42036,10 +42175,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:O75394 [Term] id: PR:000010594 -name: 39S ribosomal protein L34, mitochondrial +name: large ribosomal subunit protein bL34m namespace: protein def: "A protein that is a translation product of the human MRPL34 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "39S ribosomal protein L34, mitochondrial" EXACT [] synonym: "L34mt" EXACT [] synonym: "MRP-L34" EXACT [] synonym: "MRPL34" EXACT PRO-short-label [PRO:DNx] @@ -42048,10 +42188,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9BQ48 [Term] id: PR:000010598 -name: 39S ribosomal protein L38, mitochondrial +name: large ribosomal subunit protein mL38 namespace: protein def: "A protein that is a translation product of the human MRPL38 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "39S ribosomal protein L38, mitochondrial" EXACT [] synonym: "HSPC262" RELATED Gene-based [] synonym: "L38mt" EXACT [] synonym: "MRP-L38" EXACT [] @@ -42061,10 +42202,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q96DV4 [Term] id: PR:000010613 -name: 39S ribosomal protein L52, mitochondrial +name: large ribosomal subunit protein mL52 namespace: protein def: "A protein that is a translation product of the human MRPL52 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "39S ribosomal protein L52, mitochondrial" EXACT [] synonym: "L52mt" EXACT [] synonym: "MRP-L52" EXACT [] synonym: "MRPL52" EXACT PRO-short-label [PRO:DNx] @@ -42073,10 +42215,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q86TS9 [Term] id: PR:000010616 -name: 39S ribosomal protein L55, mitochondrial +name: large ribosomal subunit protein mL55 namespace: protein def: "A protein that is a translation product of the human MRPL55 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "39S ribosomal protein L55, mitochondrial" EXACT [] synonym: "L55mt" EXACT [] synonym: "MRP-L55" EXACT [] synonym: "MRPL55" EXACT PRO-short-label [PRO:DNx] @@ -42086,10 +42229,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q7Z7F7 [Term] id: PR:000010621 -name: 28S ribosomal protein S14, mitochondrial +name: small ribosomal subunit protein uS14m namespace: protein def: "A protein that is a translation product of the human MRPS14 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "28S ribosomal protein S14, mitochondrial" EXACT [] synonym: "MRP-S14" EXACT [] synonym: "MRPS14" EXACT PRO-short-label [PRO:DNx] synonym: "S14mt" EXACT [] @@ -44637,10 +44781,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P40261 [Term] id: PR:000011317 -name: nodal modulator 1 +name: BOS complex subunit NOMO1 namespace: protein def: "A protein that is a translation product of the human NOMO1 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "nodal modulator 1" EXACT [] synonym: "NOMO1" EXACT PRO-short-label [PRO:DNx] synonym: "PM5" RELATED Gene-based [] synonym: "pM5 protein" EXACT [] @@ -44649,10 +44794,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q15155 [Term] id: PR:000011318 -name: nodal modulator 2 +name: BOS complex subunit NOMO2 namespace: protein def: "A protein that is a translation product of the human NOMO2 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "nodal modulator 2" EXACT [] synonym: "NOMO2" EXACT PRO-short-label [PRO:DNx] synonym: "pM5 protein 2" EXACT [] is_a: PR:000000001 ! protein @@ -44692,7 +44838,7 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9Y3C1 [Term] id: PR:000011328 -name: nitric oxide synthase, endothelial +name: nitric oxide synthase 3 namespace: protein def: "A protein that is a translation product of the human NOS3 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. @@ -44702,6 +44848,7 @@ synonym: "EC-NOS" EXACT [] synonym: "Ecnos" RELATED Gene-based [] synonym: "endothelial NOS" EXACT [] synonym: "eNOS" EXACT [] +synonym: "nitric oxide synthase, endothelial" EXACT [] synonym: "NOS type III" EXACT [] synonym: "NOS3" EXACT PRO-short-label [PRO:DNx] synonym: "NOSIII" EXACT [] @@ -45081,7 +45228,7 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q86WQ0 [Term] id: PR:000011408 -name: nuclear receptor subfamily 4 group A member 1 +name: nuclear receptor subfamily 4 immunity group A member 1 namespace: protein def: "A protein that is a translation product of the human NR4A1 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. @@ -45768,10 +45915,13 @@ name: diphosphoinositol polyphosphate phosphohydrolase 1 namespace: protein def: "A protein that is a translation product of the human NUDT3 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "Ap6A hydrolase" EXACT [] synonym: "diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 1" EXACT [] +synonym: "diadenosine hexaphosphate hydrolase" EXACT [] synonym: "DIPP" RELATED Gene-based [] synonym: "DIPP-1" EXACT [] synonym: "DIPP1" RELATED Gene-based [] +synonym: "endopolyphosphatase" EXACT [] synonym: "muDIPP1" EXACT [] synonym: "nucleoside diphosphate-linked moiety X motif 3" EXACT [] synonym: "nudix motif 3" EXACT [] @@ -47989,10 +48139,12 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q01064 [Term] id: PR:000012472 -name: cAMP-specific 3',5'-cyclic phosphodiesterase 4A +name: 3',5'-cyclic-AMP phosphodiesterase 4A namespace: protein def: "A protein that is a translation product of the human PDE4A gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "cAMP-specific 3',5'-cyclic phosphodiesterase 4A" EXACT [] +synonym: "cAMP-specific phosphodiesterase 4A" EXACT [] synonym: "DPDE2" RELATED Gene-based [] synonym: "PDE46" EXACT [] synonym: "PDE4A" EXACT PRO-short-label [PRO:DNx] @@ -48002,10 +48154,12 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P27815 [Term] id: PR:000012474 -name: cAMP-specific 3',5'-cyclic phosphodiesterase 4C +name: 3',5'-cyclic-AMP phosphodiesterase 4C namespace: protein def: "A protein that is a translation product of the human PDE4C gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "cAMP-specific 3',5'-cyclic phosphodiesterase 4C" EXACT [] +synonym: "cAMP-specific phosphodiesterase 4C" EXACT [] synonym: "DPDE1" RELATED Gene-based [] synonym: "PDE21" EXACT [] synonym: "PDE4C" EXACT PRO-short-label [PRO:DNx] @@ -50100,6 +50254,9 @@ name: DNA polymerase beta namespace: protein def: "A protein that is a translation product of the human POLB gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "5'-deoxyribose-phosphate lyase" EXACT [] +synonym: "5'-dRP lyase" EXACT [] +synonym: "AP lyase" EXACT [] synonym: "POLB" EXACT PRO-short-label [PRO:DNx] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P06746 @@ -50973,12 +51130,13 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P50897 [Term] id: PR:000013164 -name: pancreatic prohormone +name: pancreatic polypeptide prohormone namespace: protein def: "A protein that is a translation product of the human PPY gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "obinepitide" EXACT [] synonym: "pancreatic polypeptide" EXACT [] +synonym: "pancreatic prohormone" EXACT [] synonym: "PNP" RELATED Gene-based [] synonym: "PP" EXACT [] synonym: "PPY" EXACT PRO-short-label [PRO:DNx] @@ -54065,10 +54223,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9UKA8 [Term] id: PR:000013836 -name: 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 +name: 5-hydroxymethyl-dUMP N-hydrolase namespace: protein def: "A protein that is a translation product of the human DNPH1 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "2'-deoxynucleoside 5'-phosphate N-hydrolase 1" EXACT [] synonym: "c-Myc-responsive protein Rcl" EXACT [] synonym: "C6orf108" RELATED Gene-based [] synonym: "DNPH1" EXACT PRO-short-label [PRO:DNx] @@ -54274,24 +54433,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q06141 [Term] id: PR:000013872 -name: regenerating islet-derived protein 3-gamma +name: obsolete regenerating islet-derived protein 3-gamma namespace: protein -def: "A protein that is a translation product of the human REG3G gene or a 1:1 ortholog thereof." [PRO:DNx] -comment: Category=gene. -synonym: "pancreatitis-associated protein 1B" EXACT [] -synonym: "pancreatitis-associated protein 3" EXACT [] -synonym: "pancreatitis-associated protein IB" EXACT [] -synonym: "PAP IB" EXACT [] -synonym: "PAP-1B" EXACT [] -synonym: "PAP1B" RELATED Gene-based [] -synonym: "Pap3" RELATED Gene-based [] -synonym: "Reg III-gamma" EXACT [] -synonym: "REG-3-gamma" EXACT [] -synonym: "REG3G" EXACT PRO-short-label [PRO:DNx] -synonym: "regenerating islet-derived protein III-gamma" EXACT [] -synonym: "UNQ429/PRO162" RELATED Gene-based [] -is_a: PR:000000001 ! protein -property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q6UW15 +def: "OBSOLETE. A protein that is a translation product of the human REG3G gene or a 1:1 ortholog thereof." [PRO:DNx] +comment: Category (was) gene. Made obsolete because this is one of a set of paralogs (that is, no 1:1 orthology is possible). Had archetype PR:Q6UW15. +is_obsolete: true [Term] id: PR:000013876 @@ -55492,31 +55638,32 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P49247 [Term] id: PR:000014190 -name: 60S ribosomal protein L11 +name: eukaryotic-type large ribosomal subunit protein uL5 namespace: protein def: "A protein that is a translation product of the human RPL11 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "60S ribosomal protein L11" EXACT [] synonym: "CLL-associated antigen KW-12" EXACT [] synonym: "RPL11" EXACT PRO-short-label [PRO:DNx] is_a: PR:000000001 ! protein -property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P62913 [Term] id: PR:000014191 -name: 60S ribosomal protein L12 +name: eukaryotic-type large ribosomal subunit protein uL11 namespace: protein def: "A protein that is a translation product of the human RPL12 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "60S ribosomal protein L12" EXACT [] synonym: "RPL12" EXACT PRO-short-label [PRO:DNx] is_a: PR:000000001 ! protein -property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P30050 [Term] id: PR:000014207 -name: 60S ribosomal protein L26-like 1 +name: ribosomal protein uL24-like namespace: protein def: "A protein that is a translation product of the human RPL26L1 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "60S ribosomal protein L26-like 1" EXACT [] synonym: "RPL26L1" EXACT PRO-short-label [PRO:DNx] synonym: "RPL26P1" RELATED Gene-based [] is_a: PR:000000001 ! protein @@ -55524,41 +55671,44 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9UNX3 [Term] id: PR:000014213 -name: 60S ribosomal protein L30 +name: large ribosomal subunit protein eL30 namespace: protein def: "A protein that is a translation product of the human RPL30 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "60S ribosomal protein L30" EXACT [] synonym: "RPL30" EXACT PRO-short-label [PRO:DNx] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P62888 [Term] id: PR:000014224 -name: 60S ribosomal protein L38 +name: large ribosomal subunit protein eL38 namespace: protein def: "A protein that is a translation product of the human RPL38 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "60S ribosomal protein L38" EXACT [] synonym: "RPL38" EXACT PRO-short-label [PRO:DNx] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P63173 [Term] id: PR:000014230 -name: 60S ribosomal protein L5 +name: eukaryotic-type large ribosomal subunit protein uL18 namespace: protein def: "A protein that is a translation product of the human RPL5 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "60S ribosomal protein L5" EXACT [] synonym: "MSTP030" RELATED Gene-based [] synonym: "RPL5" EXACT PRO-short-label [PRO:DNx] is_a: PR:000000001 ! protein -property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P46777 [Term] id: PR:000014239 -name: 60S acidic ribosomal protein P2 +name: large ribosomal subunit protein P2 namespace: protein def: "A protein that is a translation product of the human RPLP2 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "60S acidic ribosomal protein P2" EXACT [] synonym: "D11S2243E" RELATED Gene-based [] synonym: "renal carcinoma antigen NY-REN-44" EXACT [] synonym: "RPLP2" EXACT PRO-short-label [PRO:DNx] @@ -55634,58 +55784,61 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q96P16 [Term] id: PR:000014253 -name: 40S ribosomal protein S12 +name: small ribosomal subunit protein eS12 namespace: protein def: "A protein that is a translation product of the human RPS12 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "40S ribosomal protein S12" EXACT [] synonym: "RPS12" EXACT PRO-short-label [PRO:DNx] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P25398 [Term] id: PR:000014255 -name: 40S ribosomal protein S14 +name: eukaryotic-type small ribosomal subunit protein uS11 namespace: protein def: "A protein that is a translation product of the human RPS14 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "40S ribosomal protein S14" EXACT [] synonym: "PRO2640" RELATED Gene-based [] synonym: "RPS14" EXACT PRO-short-label [PRO:DNx] is_a: PR:000000001 ! protein -property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P62263 [Term] id: PR:000014261 -name: 40S ribosomal protein S19 +name: small ribosomal subunit protein eS19 namespace: protein def: "A protein that is a translation product of the human RPS19 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "40S ribosomal protein S19" EXACT [] synonym: "RPS19" EXACT PRO-short-label [PRO:DNx] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P39019 [Term] id: PR:000014264 -name: 40S ribosomal protein S20 +name: eukaryotic-type small ribosomal subunit protein uS10 namespace: protein def: "A protein that is a translation product of the human RPS20 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "40S ribosomal protein S20" EXACT [] synonym: "RPS20" EXACT PRO-short-label [PRO:DNx] is_a: PR:000000001 ! protein -property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P60866 [Term] id: PR:000014268 -name: 40S ribosomal protein S25 +name: small ribosomal subunit protein eS25 namespace: protein def: "A protein that is a translation product of the human RPS25 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "40S ribosomal protein S25" EXACT [] synonym: "RPS25" EXACT PRO-short-label [PRO:DNx] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P62851 [Term] id: PR:000014271 -name: ubiquitin-40S ribosomal protein S27a +name: ubiquitin-ribosomal protein eS31 fusion protein namespace: protein def: "A protein that is a translation product of the human RPS27A gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. @@ -55694,14 +55847,16 @@ synonym: "RPS27A" EXACT PRO-short-label [PRO:DNx] synonym: "UBA80" RELATED Gene-based [] synonym: "UBCEP1" RELATED Gene-based [] synonym: "ubiquitin carboxyl extension protein 80" EXACT [] +synonym: "ubiquitin-40S ribosomal protein S27a" EXACT [PRO:DAN] is_a: PR:000000001 ! protein [Term] id: PR:000014276 -name: 40S ribosomal protein S3a +name: small ribosomal subunit protein eS1 namespace: protein def: "A protein that is a translation product of the human RPS3A gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "40S ribosomal protein S3a" EXACT [] synonym: "Fte-1" EXACT [] synonym: "FTE1" RELATED Gene-based [] synonym: "MFTL" RELATED Gene-based [] @@ -55713,10 +55868,11 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P61247 [Term] id: PR:000014277 -name: 40S ribosomal protein S4, X isoform +name: small ribosomal subunit protein eS4, X isoform namespace: protein def: "A protein that is a translation product of the human RPS4X gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "40S ribosomal protein S4, X isoform" EXACT [] synonym: "CCG2" RELATED Gene-based [] synonym: "RPS4" RELATED Gene-based [] synonym: "RPS4X" EXACT PRO-short-label [PRO:DNx] @@ -55728,13 +55884,13 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P62701 [Term] id: PR:000014280 -name: 40S ribosomal protein S5 +name: eukaryotic-type small ribosomal subunit protein uS7 namespace: protein def: "A protein that is a translation product of the human RPS5 gene, a 1:1 ortholog thereof, or pro-orthologs thereof." [PRO:DAN] comment: Category=gene. Pro-orthology refers to, in this case, after-speciation gene duplication in the non-human species (aka 1:many orthology). +synonym: "40S ribosomal protein S5" EXACT [PRO:DAN] synonym: "RPS5" EXACT PRO-short-label [PRO:DNx] is_a: PR:000000001 ! protein -property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P46782 [Term] id: PR:000014282 @@ -56969,6 +57125,7 @@ def: "A protein that is a translation product of the human SEC13 gene or a 1:1 o comment: Category=gene. synonym: "D3S1231E" RELATED Gene-based [] synonym: "GATOR complex protein SEC13" EXACT [] +synonym: "GATOR2 complex protein SEC13" EXACT [] synonym: "SEC13" EXACT PRO-short-label [PRO:DNx] synonym: "SEC13-like protein 1" EXACT [] synonym: "SEC13-related protein" EXACT [] @@ -58939,13 +59096,16 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q8TAD4 [Term] id: PR:000015137 -name: neutral and basic amino acid transport protein rBAT +name: amino acid transporter heavy chain SLC3A1 namespace: protein def: "A protein that is a translation product of the human SLC3A1 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "B(0,+)-type amino acid transport protein" EXACT [] +synonym: "b(0,+)-type amino acid transporter-related heavy chain" EXACT [] synonym: "D2h" EXACT [] -synonym: "NBAT" EXACT [] +synonym: "NBAT" RELATED Gene-based [] +synonym: "neutral and basic amino acid transport protein" EXACT [] +synonym: "neutral and basic amino acid transport protein rBAT" EXACT [] synonym: "RBAT" RELATED Gene-based [] synonym: "SLC3A1" EXACT PRO-short-label [PRO:DNx] synonym: "solute carrier family 3 member 1" EXACT [] @@ -60149,14 +60309,17 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q8NHS9 [Term] id: PR:000015492 -name: ribosome biogenesis protein SPATA5 +name: ATPase family gene 2 protein homolog A namespace: protein -def: "A protein that is a translation product of the human SPATA5 gene or a 1:1 ortholog thereof." [PRO:DNx] +def: "A protein that is a translation product of the human AFG2A gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "AFG2" RELATED Gene-based [] +synonym: "AFG2 AAA ATPase homolog A" EXACT [] +synonym: "AFG2A" EXACT PRO-short-label [PRO:DNx] synonym: "ATPase family protein 2 homolog" EXACT [] +synonym: "ribosome biogenesis protein SPATA5" EXACT [] synonym: "SPAF" RELATED Gene-based [] -synonym: "SPATA5" EXACT PRO-short-label [PRO:DNx] +synonym: "SPATA5" RELATED Gene-based [] synonym: "spermatogenesis-associated factor protein" EXACT [] synonym: "spermatogenesis-associated protein 5" EXACT [] is_a: PR:000000001 ! protein @@ -61607,6 +61770,17 @@ synonym: "STX4A" RELATED Gene-based [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q12846 +[Term] +id: PR:000015797 +name: syntaxin-5 +namespace: protein +def: "A protein that is a translation product of the human STX5 gene or a 1:1 ortholog thereof." [PRO:DNx] +comment: Category=gene. +synonym: "STX5" EXACT PRO-short-label [PRO:DNx] +synonym: "STX5A" RELATED Gene-based [] +is_a: PR:000000001 ! protein +property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q13190 + [Term] id: PR:000015798 name: syntaxin-6 @@ -65416,10 +65590,11 @@ is_a: PR:000000001 ! protein [Term] id: PR:000016769 -name: protein TSSC4 +name: U5 small nuclear ribonucleoprotein TSSC4 namespace: protein def: "A protein that is a translation product of the human TSSC4 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "protein TSSC4" EXACT [] synonym: "TSSC4" EXACT PRO-short-label [PRO:DNx] synonym: "tumor-suppressing STF cDNA 4 protein" EXACT [] synonym: "tumor-suppressing subchromosomal transferable fragment candidate gene 4 protein" EXACT [] @@ -65649,6 +65824,7 @@ name: thioredoxin-related transmembrane protein 1 namespace: protein def: "A protein that is a translation product of the human TMX1 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "protein disulfide-isomerase TMX1" EXACT [] synonym: "PSEC0085" RELATED Gene-based [] synonym: "thioredoxin domain-containing protein 1" EXACT [] synonym: "TMX" RELATED Gene-based [] @@ -65858,9 +66034,12 @@ def: "A protein that is a translation product of the human UAP1 gene or a 1:1 or comment: Category=gene. synonym: "AGX" EXACT [] synonym: "antigen X" EXACT [] +synonym: "protein-pyrophosphorylation enzyme" EXACT [] synonym: "SPAG2" RELATED Gene-based [] synonym: "sperm-associated antigen 2" EXACT [] synonym: "UAP1" EXACT PRO-short-label [PRO:DNx] +synonym: "UDP-N-acetylgalactosamine pyrophosphorylase" EXACT [] +synonym: "UDP-N-acetylglucosamine pyrophosphorylase" EXACT [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q16222 @@ -65915,7 +66094,7 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9GZZ9 [Term] id: PR:000016954 -name: ubiquitin-60S ribosomal protein L40 +name: ubiquitin-ribosomal protein eL40 fusion protein namespace: protein def: "A protein that is a translation product of the human UBA52 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. @@ -66061,6 +66240,7 @@ synonym: "E214K" EXACT [] synonym: "HR6B" EXACT [] synonym: "RAD6 homolog B" EXACT [] synonym: "RAD6B" RELATED Gene-based [] +synonym: "UBCH1" RELATED Gene-based [] synonym: "UBE2B" EXACT PRO-short-label [PRO:DNx] synonym: "ubiquitin carrier protein B" EXACT [] synonym: "ubiquitin-conjugating enzyme E2-17 kDa" EXACT [] @@ -67549,6 +67729,8 @@ namespace: protein def: "A protein that is a translation product of the human VCP gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "15S Mg(2+)-ATPase p97 subunit" EXACT [] +synonym: "HEL-220" RELATED Gene-based [] +synonym: "HEL-S-70" RELATED Gene-based [] synonym: "TER ATPase" EXACT [] synonym: "valosin-containing protein" EXACT [] synonym: "VCP" EXACT PRO-short-label [PRO:DNx] @@ -67621,10 +67803,12 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P11473 [Term] id: PR:000017284 -name: vascular endothelial growth factor A +name: vascular endothelial growth factor A, long form namespace: protein def: "A protein that is a translation product of the human VEGFA gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "L-VEGF" EXACT [] +synonym: "vascular endothelial growth factor A" EXACT [] synonym: "vascular permeability factor" EXACT [] synonym: "VEGF" RELATED Gene-based [] synonym: "VEGF-A" EXACT [] @@ -68402,6 +68586,7 @@ def: "A protein that is a translation product of the human XBP1 gene or a 1:1 or comment: Category=gene. synonym: "Tax-responsive element-binding protein 5" EXACT [] synonym: "Tax-responsive element-binding protein 5 homolog" EXACT [] +synonym: "TREB-5" EXACT [] synonym: "TREB5" RELATED Gene-based [] synonym: "XBP-1" EXACT [] synonym: "XBP1" EXACT PRO-short-label [PRO:DNx] @@ -69906,7 +70091,7 @@ name: Na(+)/H(+) exchange regulatory cofactor NHE-RF1, initiator methionine remo namespace: protein def: "A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. -synonym: "SLC9A3R1/InitMet-" EXACT PRO-short-label [PRO:DNx] +synonym: "NHERF1/InitMet-" EXACT PRO-short-label [PRO:DNx] is_a: PR:000001041 ! Na(+)/H(+) exchange regulatory cofactor NHE-RF1 intersection_of: PR:000001041 ! Na(+)/H(+) exchange regulatory cofactor NHE-RF1 intersection_of: lacks_part PR:000021937 ! initiator methionine @@ -70980,6 +71165,7 @@ relationship: lacks_part SO:0000418 ! signal_peptide id: PR:000018574 name: CD14 molecule, signal peptide removed form namespace: protein +alt_id: PR:000025460 def: "A CD14 molecule that has had the signal peptide removed." [PRO:DNx] comment: Category=modification. synonym: "CD14/SigPep-" EXACT PRO-short-label [PRO:DNx] @@ -72554,13 +72740,13 @@ relationship: lacks_part PR:000021937 ! initiator methionine [Term] id: PR:000018952 -name: aldehyde dehydrogenase family 1 member A3, initiator methionine removed form +name: retinaldehyde dehydrogenase 3, initiator methionine removed form namespace: protein -def: "An aldehyde dehydrogenase family 1 member A3 that has had the initiator methionine removed." [PRO:DNx] +def: "A retinaldehyde dehydrogenase 3 that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. synonym: "ALDH1A3/InitMet-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000003922 ! aldehyde dehydrogenase family 1 member A3 -intersection_of: PR:000003922 ! aldehyde dehydrogenase family 1 member A3 +is_a: PR:000003922 ! retinaldehyde dehydrogenase 3 +intersection_of: PR:000003922 ! retinaldehyde dehydrogenase 3 intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine @@ -76996,13 +77182,13 @@ relationship: lacks_part PR:000021937 ! initiator methionine [Term] id: PR:000020022 -name: receptor of activated protein C kinase 1, initiator methionine removed form +name: small ribosomal subunit protein RACK1, initiator methionine removed form namespace: protein -def: "A receptor of activated protein C kinase 1 that has had the initiator methionine removed." [PRO:DNx] +def: "A small ribosomal subunit protein RACK1 that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. synonym: "RACK1/InitMet-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000008098 ! receptor of activated protein C kinase 1 -intersection_of: PR:000008098 ! receptor of activated protein C kinase 1 +is_a: PR:000008098 ! small ribosomal subunit protein RACK1 +intersection_of: PR:000008098 ! small ribosomal subunit protein RACK1 intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine @@ -77392,7 +77578,7 @@ name: hemoglobin subunit alpha, initiator methionine removed form namespace: protein def: "A hemoglobin subunit alpha that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. -synonym: "HBA2/InitMet-" EXACT PRO-short-label [PRO:DNx] +synonym: "HBA/InitMet-" EXACT PRO-short-label [PRO:DNx] is_a: PR:000008456 ! hemoglobin subunit alpha intersection_of: PR:000008456 ! hemoglobin subunit alpha intersection_of: lacks_part PR:000021937 ! initiator methionine @@ -80018,13 +80204,13 @@ relationship: output_of GO:0016485 ! protein processing [Term] id: PR:000020762 -name: nitric oxide synthase, endothelial, initiator methionine removed form +name: nitric oxide synthase 3, initiator methionine removed form namespace: protein -def: "A nitric oxide synthase, endothelial that has had the initiator methionine removed." [PRO:DNx] +def: "A nitric oxide synthase 3 that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. synonym: "NOS3/InitMet-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000011328 ! nitric oxide synthase, endothelial -intersection_of: PR:000011328 ! nitric oxide synthase, endothelial +is_a: PR:000011328 ! nitric oxide synthase 3 +intersection_of: PR:000011328 ! nitric oxide synthase 3 intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine @@ -81365,26 +81551,26 @@ relationship: lacks_part PR:000021937 ! initiator methionine [Term] id: PR:000021065 -name: pancreatic prohormone, signal peptide removed form +name: pancreatic polypeptide prohormone, signal peptide removed form namespace: protein -def: "A pancreatic prohormone that has had the signal peptide removed." [PRO:DNx] +def: "A pancreatic polypeptide prohormone that has had the signal peptide removed." [PRO:DNx] comment: Category=modification. synonym: "PPY/SigPep-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000013164 ! pancreatic prohormone -intersection_of: PR:000013164 ! pancreatic prohormone +is_a: PR:000013164 ! pancreatic polypeptide prohormone +intersection_of: PR:000013164 ! pancreatic polypeptide prohormone intersection_of: lacks_part SO:0000418 ! signal_peptide relationship: lacks_part SO:0000418 ! signal_peptide [Term] id: PR:000021066 -name: pancreatic prohormone proteolytic cleavage product +name: pancreatic polypeptide prohormone proteolytic cleavage product namespace: protein -def: "A pancreatic prohormone that has been processed by proteolytic cleavage." [PRO:DNx] +def: "A pancreatic polypeptide prohormone that has been processed by proteolytic cleavage." [PRO:DNx] comment: Category=modification. synonym: "PPY/ClvPrd" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000013164 ! pancreatic prohormone +is_a: PR:000013164 ! pancreatic polypeptide prohormone is_a: PR:000018264 ! proteolytic cleavage product -intersection_of: PR:000013164 ! pancreatic prohormone +intersection_of: PR:000013164 ! pancreatic polypeptide prohormone intersection_of: output_of GO:0016485 ! protein processing relationship: output_of GO:0016485 ! protein processing @@ -82181,18 +82367,6 @@ intersection_of: PR:000013869 ! lithostathine-1-alpha intersection_of: lacks_part SO:0000418 ! signal_peptide relationship: lacks_part SO:0000418 ! signal_peptide -[Term] -id: PR:000021253 -name: regenerating islet-derived protein 3-gamma, signal peptide removed form -namespace: protein -def: "A regenerating islet-derived protein 3-gamma that has had the signal peptide removed." [PRO:DNx] -comment: Category=modification. -synonym: "REG3G/SigPep-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000013872 ! regenerating islet-derived protein 3-gamma -intersection_of: PR:000013872 ! regenerating islet-derived protein 3-gamma -intersection_of: lacks_part SO:0000418 ! signal_peptide -relationship: lacks_part SO:0000418 ! signal_peptide - [Term] id: PR:000021257 name: tumor necrosis factor receptor superfamily member 19L, signal peptide removed form @@ -82280,25 +82454,25 @@ relationship: lacks_part PR:000021937 ! initiator methionine [Term] id: PR:000021287 -name: 60S ribosomal protein L11, initiator methionine removed form +name: eukaryotic-type large ribosomal subunit protein uL5, initiator methionine removed form namespace: protein -def: "A 60S ribosomal protein L11 that has had the initiator methionine removed." [PRO:DNx] +def: "A eukaryotic-type large ribosomal subunit protein uL5 that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. synonym: "RPL11/InitMet-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000014190 ! 60S ribosomal protein L11 -intersection_of: PR:000014190 ! 60S ribosomal protein L11 +is_a: PR:000014190 ! eukaryotic-type large ribosomal subunit protein uL5 +intersection_of: PR:000014190 ! eukaryotic-type large ribosomal subunit protein uL5 intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine [Term] id: PR:000021305 -name: 60S ribosomal protein L5, initiator methionine removed form +name: eukaryotic-type large ribosomal subunit protein uL18, initiator methionine removed form namespace: protein -def: "A 60S ribosomal protein L5 that has had the initiator methionine removed." [PRO:DNx] +def: "A eukaryotic-type large ribosomal subunit protein uL18 that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. synonym: "RPL5/InitMet-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000014230 ! 60S ribosomal protein L5 -intersection_of: PR:000014230 ! 60S ribosomal protein L5 +is_a: PR:000014230 ! eukaryotic-type large ribosomal subunit protein uL18 +intersection_of: PR:000014230 ! eukaryotic-type large ribosomal subunit protein uL18 intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine @@ -82328,98 +82502,98 @@ relationship: lacks_part PR:000021937 ! initiator methionine [Term] id: PR:000021316 -name: 40S ribosomal protein S12, initiator methionine removed form +name: small ribosomal subunit protein eS12, initiator methionine removed form namespace: protein -def: "A 40S ribosomal protein S12 that has had the initiator methionine removed." [PRO:DNx] +def: "A small ribosomal subunit protein eS12 that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. synonym: "RPS12/InitMet-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000014253 ! 40S ribosomal protein S12 -intersection_of: PR:000014253 ! 40S ribosomal protein S12 +is_a: PR:000014253 ! small ribosomal subunit protein eS12 +intersection_of: PR:000014253 ! small ribosomal subunit protein eS12 intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine [Term] id: PR:000021317 -name: 40S ribosomal protein S14, initiator methionine removed form +name: eukaryotic-type small ribosomal subunit protein uS11, initiator methionine removed form namespace: protein -def: "A 40S ribosomal protein S14 that has had the initiator methionine removed." [PRO:DNx] +def: "A eukaryotic-type small ribosomal subunit protein uS11 that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. synonym: "RPS14/InitMet-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000014255 ! 40S ribosomal protein S14 -intersection_of: PR:000014255 ! 40S ribosomal protein S14 +is_a: PR:000014255 ! eukaryotic-type small ribosomal subunit protein uS11 +intersection_of: PR:000014255 ! eukaryotic-type small ribosomal subunit protein uS11 intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine [Term] id: PR:000021323 -name: 40S ribosomal protein S19, initiator methionine removed form +name: small ribosomal subunit protein eS19, initiator methionine removed form namespace: protein -def: "A 40S ribosomal protein S19 that has had the initiator methionine removed." [PRO:DNx] +def: "A small ribosomal subunit protein eS19 that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. synonym: "RPS19/InitMet-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000014261 ! 40S ribosomal protein S19 -intersection_of: PR:000014261 ! 40S ribosomal protein S19 +is_a: PR:000014261 ! small ribosomal subunit protein eS19 +intersection_of: PR:000014261 ! small ribosomal subunit protein eS19 intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine [Term] id: PR:000021325 -name: 40S ribosomal protein S20, initiator methionine removed form +name: eukaryotic-type small ribosomal subunit protein uS10, initiator methionine removed form namespace: protein -def: "A 40S ribosomal protein S20 that has had the initiator methionine removed." [PRO:DNx] +def: "A eukaryotic-type small ribosomal subunit protein uS10 that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. synonym: "RPS20/InitMet-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000014264 ! 40S ribosomal protein S20 -intersection_of: PR:000014264 ! 40S ribosomal protein S20 +is_a: PR:000014264 ! eukaryotic-type small ribosomal subunit protein uS10 +intersection_of: PR:000014264 ! eukaryotic-type small ribosomal subunit protein uS10 intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine [Term] id: PR:000021331 -name: 40S ribosomal protein S3a, initiator methionine removed form +name: small ribosomal subunit protein eS1, initiator methionine removed form namespace: protein -def: "A 40S ribosomal protein S3a that has had the initiator methionine removed." [PRO:DNx] +def: "A small ribosomal subunit protein eS1 that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. synonym: "RPS3A/InitMet-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000014276 ! 40S ribosomal protein S3a -intersection_of: PR:000014276 ! 40S ribosomal protein S3a +is_a: PR:000014276 ! small ribosomal subunit protein eS1 +intersection_of: PR:000014276 ! small ribosomal subunit protein eS1 intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine [Term] id: PR:000021332 -name: 40S ribosomal protein S4, X isoform, initiator methionine removed form +name: small ribosomal subunit protein eS4, X isoform, initiator methionine removed form namespace: protein -def: "A 40S ribosomal protein S4, X isoform that has had the initiator methionine removed." [PRO:DNx] +def: "A small ribosomal subunit protein eS4, X isoform that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. synonym: "RPS4X/InitMet-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000014277 ! 40S ribosomal protein S4, X isoform -intersection_of: PR:000014277 ! 40S ribosomal protein S4, X isoform +is_a: PR:000014277 ! small ribosomal subunit protein eS4, X isoform +intersection_of: PR:000014277 ! small ribosomal subunit protein eS4, X isoform intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine [Term] id: PR:000021333 -name: 40S ribosomal protein S5, initiator methionine removed form +name: eukaryotic-type small ribosomal subunit protein uS7, initiator methionine removed form namespace: protein -def: "A 40S ribosomal protein S5 that has had the initiator methionine removed." [PRO:DNx] +def: "A eukaryotic-type small ribosomal subunit protein uS7 that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. synonym: "RPS5/InitMet-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000014280 ! 40S ribosomal protein S5 -intersection_of: PR:000014280 ! 40S ribosomal protein S5 +is_a: PR:000014280 ! eukaryotic-type small ribosomal subunit protein uS7 +intersection_of: PR:000014280 ! eukaryotic-type small ribosomal subunit protein uS7 intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine [Term] id: PR:000021334 -name: 40S ribosomal protein S5 proteolytic cleavage product +name: eukaryotic-type small ribosomal subunit protein uS7 proteolytic cleavage product namespace: protein -def: "A 40S ribosomal protein S5 that has been processed by proteolytic cleavage." [PRO:DNx] +def: "A eukaryotic-type small ribosomal subunit protein uS7 that has been processed by proteolytic cleavage." [PRO:DNx] comment: Category=modification. synonym: "RPS5/ClvPrd" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000014280 ! 40S ribosomal protein S5 +is_a: PR:000014280 ! eukaryotic-type small ribosomal subunit protein uS7 is_a: PR:000018264 ! proteolytic cleavage product -intersection_of: PR:000014280 ! 40S ribosomal protein S5 +intersection_of: PR:000014280 ! eukaryotic-type small ribosomal subunit protein uS7 intersection_of: output_of GO:0016485 ! protein processing relationship: output_of GO:0016485 ! protein processing @@ -84335,13 +84509,13 @@ relationship: lacks_part PR:000021937 ! initiator methionine [Term] id: PR:000021820 -name: vascular endothelial growth factor A, signal peptide removed form +name: vascular endothelial growth factor A, long form, signal peptide removed form namespace: protein -def: "A vascular endothelial growth factor A that has had the signal peptide removed." [PRO:DNx] +def: "A vascular endothelial growth factor A, long form that has had the signal peptide removed." [PRO:DNx] comment: Category=modification. synonym: "VEGFA/SigPep-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000017284 ! vascular endothelial growth factor A -intersection_of: PR:000017284 ! vascular endothelial growth factor A +is_a: PR:000017284 ! vascular endothelial growth factor A, long form +intersection_of: PR:000017284 ! vascular endothelial growth factor A, long form intersection_of: lacks_part SO:0000418 ! signal_peptide relationship: lacks_part SO:0000418 ! signal_peptide @@ -85569,7 +85743,6 @@ name: solute carrier organic anion transporter family member namespace: protein def: "A protein that contains an OATP domain (Pfam:PF03137) and a Kazal-type serine protease inhibitor domain (Pfam:PF07648)." [PRO:DAN] comment: Category=family. -xref: PANTHER:PTHR11388 is_a: PR:000000001 ! protein [Term] @@ -85693,7 +85866,6 @@ name: serpin namespace: protein def: "A protein that is primarily known as an irreversible serine protease inhibitor active against S1, S8 and C14 peptidases. There are both extra- and intra-cellular serpins, which are found in all groups of organisms with the notable exception of fungi. Serpin contains a copy of the Serpin (Pfam:PF00079) domain." [InterPro:IPR000215, PRO:CNA] comment: Category=family. -xref: PANTHER:PTHR11461 xref: PIRSF:PIRSF001630 is_a: PR:000000001 ! protein @@ -85914,6 +86086,7 @@ def: "A ubiquitin-conjugating enzyme E2 C, initiator methionine removed form in comment: Category=organism-modification. synonym: "hUBE2C/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000082560" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:O00762, 2-179" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:O00762-1, 2-179" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-174188 "PR:000026372 located_in GO:0005654" xref: Reactome:R-HSA-174244 "PR:000026372 located_in GO:0005829" @@ -85932,6 +86105,7 @@ def: "A coatomer subunit beta', initiator methionine removed form in human. Exam comment: Category=organism-modification. synonym: "hCOPB2/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000050912" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P35606, 2-906" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P35606-1, 2-906" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-199972 "PR:000026403 located_in GO:0005829" xref: Reactome:R-HSA-6808739 "PR:000026403 located_in GO:0000139" @@ -85951,6 +86125,7 @@ def: "A coatomer subunit epsilon, initiator methionine removed form in human. Ex comment: Category=organism-modification. synonym: "hCOPE/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000193851" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:O14579, 2-308" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:O14579-1, 2-308" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-199969 "PR:000026406 located_in GO:0005829" xref: Reactome:R-HSA-6808743 "PR:000026406 located_in GO:0000139" @@ -86187,13 +86362,13 @@ relationship: lacks_part SO:0000418 ! signal_peptide [Term] id: PR:000026689 -name: 60S ribosomal protein L26-like 1, initiator methionine removed form +name: ribosomal protein uL24-like, initiator methionine removed form namespace: protein -def: "A 60S ribosomal protein L26-like 1 that has had the initiator methionine removed." [PRO:DNx] +def: "A ribosomal protein uL24-like that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. synonym: "RPL26L1/InitMet-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000014207 ! 60S ribosomal protein L26-like 1 -intersection_of: PR:000014207 ! 60S ribosomal protein L26-like 1 +is_a: PR:000014207 ! ribosomal protein uL24-like +intersection_of: PR:000014207 ! ribosomal protein uL24-like intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine @@ -86295,6 +86470,7 @@ def: "A DNA-directed RNA polymerases I and III subunit RPAC1, initiator methioni comment: Category=organism-modification. synonym: "hPOLR1C/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000132739" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:O15160, 2-346" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:O15160-1, 2-346" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-1964454 "PR:000026766 located_in GO:0005829" xref: Reactome:R-HSA-63498 "PR:000026766 located_in GO:0005654" @@ -86324,6 +86500,7 @@ def: "An ephrin type-B receptor 2, signal peptide removed form in human. Example comment: Category=organism-modification. synonym: "hEPHB2/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000016827" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P29323, 19-1055" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P29323-1, 19-1055" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-443809 "PR:000026868 located_in GO:0005886" is_a: PR:000026867 ! ephrin type-B receptor 2, signal peptide removed form @@ -86356,6 +86533,7 @@ def: "A T-cell-specific surface glycoprotein CD28, signal peptide removed form i comment: Category=organism-modification. synonym: "hCD28/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000014652" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P10747, 19-220" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P10747-1, 19-220" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-167628 "PR:000026870 located_in GO:0005829" xref: Reactome:R-HSA-167632 "PR:000026870 located_in GO:0005886" @@ -86417,6 +86595,7 @@ def: "A signal-regulatory protein beta-1, signal peptide removed form in human. comment: Category=organism-modification. synonym: "hSIRPB1/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000014956" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:O00241, 30-398" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:O00241-1, 30-398" NARROW PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:Q5TFQ8-1, 30-398" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-197568 "PR:000026881 located_in GO:0005886" @@ -86446,6 +86625,7 @@ namespace: protein def: "An agrin, signal peptide removed form in human. Example: UniProtKB:O00468-1, 30-2068." [PRO:CNA, PRO:DAN] comment: Category=organism-modification. synonym: "hAGRN/SigPep-" EXACT PRO-short-label [PRO:DNx] +synonym: "UniProtKB:O00468, 30-2068" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:O00468-1, 30-2068" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-2054104 "PR:000026884 located_in GO:0005796" xref: Reactome:R-HSA-2090057 "PR:000026884 located_in GO:0043202" @@ -86477,6 +86657,7 @@ def: "A neural cell adhesion molecule L1-like protein, signal peptide removed fo comment: Category=organism-modification. synonym: "hCHL1/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000247896" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:O00533, 25-1208" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:O00533-1, 25-1208" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-443615 "PR:000026887 located_in GO:0005886" is_a: PR:000026886 ! neural cell adhesion molecule L1-like protein, signal peptide removed form @@ -86664,6 +86845,7 @@ def: "A laminin subunit alpha-3, signal peptide removed form in human. Example: comment: Category=organism-modification. synonym: "hLAMA3/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000017058" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:Q16787, 36-3333" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:Q16787-2, 36-3333" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-445991 "PR:000027297 located_in GO:0005576" is_a: PR:000020430 ! laminin subunit alpha-3, signal peptide removed form @@ -86680,6 +86862,7 @@ def: "A eukaryotic-type lysine--tRNA ligase, initiator methionine removed form i comment: Category=organism-modification. synonym: "hKARS/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000152765" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:Q15046, 2-597" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:Q15046-1, 2-597" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-379568 "PR:000027320 located_in GO:0005829" xref: Reactome:R-HSA-379617 "PR:000027320 located_in GO:0005759" @@ -86697,6 +86880,7 @@ def: "A eukaryotic translation elongation factor 1 epsilon-1, initiator methioni comment: Category=organism-modification. synonym: "hEEF1E1/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000221132" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:O43324, 2-174" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:O43324-1, 2-174" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-379693 "PR:000027324 located_in GO:0005829" xref: TDR:2612 @@ -86713,6 +86897,7 @@ namespace: protein def: "A 26S proteasome non-ATPase regulatory subunit 4, initiator methionine removed form in human. Example: UniProtKB:P55036-1, 2-377." [PRO:DNx] comment: Category=organism-modification. synonym: "hPSMD4/InitMet-" EXACT PRO-short-label [PRO:DNx] +synonym: "UniProtKB:P55036, 2-377" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P55036-1, 2-377" NARROW PRO-proteoform-std [PRO:DNx] is_a: PR:000018747 ! 26S proteasome non-ATPase regulatory subunit 4, initiator methionine removed form is_a: PR:P55036 ! 26S proteasome non-ATPase regulatory subunit 4 (human) @@ -86728,6 +86913,7 @@ def: "A 26S proteasome non-ATPase regulatory subunit 5, initiator methionine rem comment: Category=organism-modification. synonym: "hPSMD5/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000173835" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:Q16401, 2-504" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:Q16401-1, 2-504" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-174346 "PR:000027337 located_in GO:0005654" xref: Reactome:R-HSA-68802 "PR:000027337 located_in GO:0005829" @@ -86745,6 +86931,7 @@ def: "A 26S proteasome non-ATPase regulatory subunit 6, initiator methionine rem comment: Category=organism-modification. synonym: "hPSMD6/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000173838" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:Q15008, 2-389" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:Q15008-1, 2-389" NARROW PRO-proteoform-std [PRO:DNx] xref: TDR:7546 is_a: PR:000018748 ! 26S proteasome non-ATPase regulatory subunit 6, initiator methionine removed form @@ -86775,6 +86962,7 @@ def: "A 26S proteasome non-ATPase regulatory subunit 11, initiator methionine re comment: Category=organism-modification. synonym: "hPSMD11/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000173857" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:O00231, 2-422" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:O00231-1, 2-422" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-174327 "PR:000027343 located_in GO:0005654" xref: Reactome:R-HSA-6800436 "PR:000027343 located_in GO:1904813" @@ -86850,6 +87038,7 @@ def: "A proteasome subunit alpha type-3, initiator methionine removed form in hu comment: Category=organism-modification. synonym: "hPSMA3/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000124091" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P25788, 2-255" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P25788-1, 2-255" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-174323 "PR:000027353 located_in GO:0005654" xref: Reactome:R-HSA-68728 "PR:000027353 located_in GO:0005829" @@ -86859,19 +87048,6 @@ intersection_of: PR:000021141 ! proteasome subunit alpha type-3, initiator methi intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens -[Term] -id: PR:000027357 -name: proteasome subunit alpha type-7, initiator methionine removed form (human) -namespace: protein -def: "A proteasome subunit alpha type-7, initiator methionine removed form in human." [PRO:DNx] -comment: Category=organism-modification. -synonym: "hPSMA7/InitMet-" EXACT PRO-short-label [PRO:DNx] -is_a: PR:000021142 ! proteasome subunit alpha type-7, initiator methionine removed form -is_a: PR:O14818 ! proteasome subunit alpha type-7 (human) -intersection_of: PR:000021142 ! proteasome subunit alpha type-7, initiator methionine removed form -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens - [Term] id: PR:000027360 name: proteasome subunit beta type-3, initiator methionine removed form (human) @@ -86948,6 +87124,7 @@ def: "An integrin alpha-M, signal peptide removed form in human. Example: UniPro comment: Category=organism-modification. synonym: "hITGAM/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000016289" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P11215, 17-1152" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P11215-1, 17-1152" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-202757 "PR:000027393 located_in GO:0005886" xref: Reactome:R-HSA-6799647 "PR:000027393 located_in GO:0035579" @@ -87029,6 +87206,7 @@ def: "A von Willebrand factor, signal peptide removed form in human. Example: Un comment: Category=organism-modification. synonym: "hVWF/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000022682" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P04275, 23-763" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P04275-1, 23-763" NARROW PRO-proteoform-std [PRO:DNx] is_a: PR:000021840 ! von Willebrand factor, signal peptide removed form is_a: PR:P04275 ! von Willebrand factor (human) @@ -87040,11 +87218,13 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000028386 name: tumor necrosis factor receptor superfamily member 1A, signal peptide removed form (human) namespace: protein -def: "A tumor necrosis factor receptor superfamily member 1A, signal peptide removed form in human. Example: UniProtKB:P19438-1, 22-455." [PRO:DNx] +def: "A tumor necrosis factor receptor superfamily member 1A, signal peptide removed form in human. Example: UniProtKB:P19438-1, 30-455." [PRO:DNx] comment: Category=organism-modification. synonym: "hTNFRSF1A/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000034543" NARROW PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:P19438-1, 22-455" NARROW PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:P19438, 30-455" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:P19438-1, 30-455" NARROW PRO-proteoform-std [PRO:DNx] +xref: Reactome:R-HSA-5675738 "PR:000028386 located_in GO:0005886" xref: Reactome:R-HSA-66344 "PR:000028386 located_in GO:0005886" is_a: PR:000018612 ! tumor necrosis factor receptor superfamily member 1A, signal peptide removed form is_a: PR:P19438 ! tumor necrosis factor receptor superfamily member 1A (human) @@ -87060,6 +87240,7 @@ def: "A telomeric repeat-binding factor 1, initiator methionine removed form in comment: Category=organism-modification. synonym: "hTERF1/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000197129" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P54274, 2-439" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P54274-1, 2-439" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-164618 "PR:000028388 located_in GO:0005654" is_a: PR:000021641 ! telomeric repeat-binding factor 1, initiator methionine removed form @@ -87076,6 +87257,7 @@ def: "An integrin alpha-IIb, signal peptide removed form in human. Example: UniP comment: Category=organism-modification. synonym: "hITGA2B/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000016275" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P08514, 32-1039" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P08514-1, 32-1039" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-57578 "PR:000028409 located_in GO:0005886" is_a: PR:000020328 ! integrin alpha-IIb, signal peptide removed form @@ -87092,6 +87274,7 @@ def: "A junctional adhesion molecule A, signal peptide removed form in human. Ex comment: Category=organism-modification. synonym: "hF11R/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000015066" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:Q9Y624, 28-299" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:Q9Y624-1, 28-299" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-197845 "PR:000028413 located_in GO:0005886" xref: Reactome:R-HSA-2134498 "PR:000028413 located_in GO:0030054" @@ -87109,6 +87292,7 @@ def: "An integrin alpha-L, signal peptide removed form in human. Example: UniPro comment: Category=organism-modification. synonym: "hITGAL/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000016292" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P20701, 26-1170" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P20701-1, 26-1170" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-198013 "PR:000028414 located_in GO:0005886" xref: Reactome:R-HSA-6799536 "PR:000028414 located_in GO:0035579" @@ -87126,6 +87310,7 @@ def: "An integrin beta-1, signal peptide removed form in human. Example: UniProt comment: Category=organism-modification. synonym: "hITGB1/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000016334" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P05556, 21-798" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P05556-1, 21-798" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-57596 "PR:000028415 located_in GO:0005886" xref: Reactome:R-HSA-9611157 "PR:000028415 located_in GO:0010008" @@ -87162,6 +87347,7 @@ def: "A neural cell adhesion molecule L1, signal peptide removed form in human. comment: Category=organism-modification. synonym: "hL1CAM/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000015022" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P32004, 20-1257" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P32004-1, 20-1257" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-191465 "PR:000028421 located_in GO:0005886" is_a: PR:000018715 ! neural cell adhesion molecule L1, signal peptide removed form @@ -87178,6 +87364,7 @@ def: "An epidermal growth factor receptor, signal peptide removed form in human. comment: Category=organism-modification. synonym: "hEGFR/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000016665" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P00533, 25-1210" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P00533-1, 25-1210" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-179837 "PR:000028422 located_in GO:0005886" xref: Reactome:R-HSA-9611160 "PR:000028422 located_in GO:0010008" @@ -87211,6 +87398,7 @@ def: "A eukaryotic translation initiation factor 4E, initiator methionine remove comment: Category=organism-modification. synonym: "hEIF4E/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000193634" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P06730, 2-217" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P06730-1, 2-217" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-72578 "PR:000028426 located_in GO:0005829" xref: TDR:1950 @@ -88201,11 +88389,13 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q5J8M3 [Term] id: PR:000029452 -name: protein FAM102B +name: EEIG family member 2 namespace: protein -def: "A protein that is a translation product of the human FAM102B gene or a 1:1 ortholog thereof." [PRO:DNx] +def: "A protein that is a translation product of the human EEIG2 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. -synonym: "FAM102B" EXACT PRO-short-label [PRO:DNx] +synonym: "EEIG2" EXACT PRO-short-label [PRO:DNx] +synonym: "FAM102B" RELATED Gene-based [] +synonym: "protein FAM102B" EXACT [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q5T8I3 @@ -88910,7 +89100,7 @@ namespace: protein def: "A protein that is a translation product of the human NRG1 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "acetylcholine receptor inducing activity" EXACT [PMID:12648463] -synonym: "ARIA" EXACT [PMID:12648463] +synonym: "ARIA" BROAD [PMID:12648463] synonym: "GGF" RELATED Gene-based [] synonym: "glial growth factor" EXACT [PMID:12648463] synonym: "heregulin" EXACT [PMID:12648463] @@ -89764,6 +89954,19 @@ comment: Category=family. synonym: "fam:TGM" EXACT PRO-short-label [PRO:DNx] is_a: PR:000000001 ! protein +[Term] +id: PR:000029986 +name: CD14 molecule cleaved 2 soluble form (mouse) +namespace: protein +def: "A CD14 molecule cleaved 2 soluble form in mouse." [PRO:DAN] +comment: Category=organism-modification. +synonym: "mCD14/Clv:2/soluble" EXACT PRO-short-label [PRO:DAN] +is_a: PR:000002147 ! CD14 molecule cleaved 2 soluble form +is_a: PR:000036946 ! CD14 molecule cleaved 2 (mouse) +intersection_of: PR:000002147 ! CD14 molecule cleaved 2 soluble form +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: PR:000030014 name: A-kinase anchor protein 7 (human) @@ -90492,17 +90695,17 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P04003 [Term] id: PR:000030473 -name: cell surface hyaluronidase +name: cell surface hyaluronidase CEMIP2 namespace: protein def: "A protein that is a translation product of the human CEMIP2 gene or a 1:1 ortholog thereof." [PRO:DNx] -comment: Category=gene. +comment: Category=gene. Note: The human CEMIP2 is not active as a hyaluronidase, however the mouse ortholog is. synonym: "cell migration-inducing hyaluronidase 2" EXACT [] +synonym: "cell surface hyaluronidase" EXACT [] synonym: "CEMIP2" EXACT PRO-short-label [PRO:DNx] synonym: "KIAA1412" RELATED Gene-based [] synonym: "TMEM2" RELATED Gene-based [] synonym: "transmembrane protein 2" EXACT [] is_a: PR:000000001 ! protein -property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9UHN6 [Term] id: PR:000030474 @@ -90575,15 +90778,17 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q8NDY8 [Term] id: PR:000030513 -name: teratocarcinoma-derived growth factor 1 +name: protein Cripto namespace: protein -def: "A protein that is a translation product of the human TDGF1 gene or a 1:1 ortholog thereof." [PRO:DNx] +def: "A protein that is a translation product of the human CRIPTO gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "CRGF" EXACT [] -synonym: "CRIPTO" RELATED Gene-based [] +synonym: "CRIPTO" EXACT PRO-short-label [PRO:DNx] +synonym: "CRIPTO-1" RELATED Gene-based [] synonym: "cripto-1 growth factor" EXACT [] synonym: "epidermal growth factor-like cripto protein CR1" EXACT [] -synonym: "TDGF1" EXACT PRO-short-label [PRO:DNx] +synonym: "TDGF1" RELATED Gene-based [] +synonym: "teratocarcinoma-derived growth factor 1" EXACT [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:P13385 @@ -90627,7 +90832,7 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9GZQ3 [Term] id: PR:000030546 -name: putative chondrosarcoma-associated gene 1 protein +name: chondrosarcoma-associated gene 1 protein namespace: protein def: "A protein that is a translation product of the human CSAG1 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. @@ -90636,6 +90841,7 @@ synonym: "cancer/testis antigen CSAGE" EXACT [] synonym: "CSAG1" EXACT PRO-short-label [PRO:DNx] synonym: "CSAGE" RELATED Gene-based [] synonym: "CT24.1" EXACT [] +synonym: "putative chondrosarcoma-associated gene 1 protein" EXACT [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q6PB30 @@ -90913,11 +91119,12 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:A6NDV4 [Term] id: PR:000030696 -name: WSC domain-containing protein 2 +name: sialate:O-sulfotransferase 2 namespace: protein def: "A protein that is a translation product of the human WSCD2 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "KIAA0789" RELATED Gene-based [] +synonym: "WSC domain-containing protein 2" EXACT [] synonym: "WSCD2" EXACT PRO-short-label [PRO:DNx] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q2TBF2 @@ -90967,12 +91174,15 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9NPG8 [Term] id: PR:000030727 -name: cotranscriptional regulator FAM172A +name: cotranscriptional regulator ARB2A namespace: protein -def: "A protein that is a translation product of the human FAM172A gene or a 1:1 ortholog thereof." [PRO:DNx] +def: "A protein that is a translation product of the human ARB2A gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "ARB2A" EXACT PRO-short-label [PRO:DNx] synonym: "C5orf21" RELATED Gene-based [] -synonym: "FAM172A" EXACT PRO-short-label [PRO:DNx] +synonym: "cotranscriptional regulator FAM172A" EXACT [] +synonym: "FAM172A" RELATED Gene-based [] +synonym: "protein FAM172A" EXACT [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q8WUF8 @@ -91664,11 +91874,13 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q8WUW1 [Term] id: PR:000031052 -name: adhesion G-protein coupled receptor F2 +name: putative adhesion G protein-coupled receptor F2P namespace: protein def: "An adhesion G-protein coupled receptor that is a translation product of the human ADGRF2 gene or a 1:1 ortholog thereof." [PRO:DAN] comment: Category=gene. synonym: "ADGRF2" EXACT PRO-short-label [PRO:DNx] +synonym: "ADGRF2P" RELATED Gene-based [] +synonym: "adhesion G-protein coupled receptor F2" EXACT [] synonym: "G-protein coupled receptor 111" EXACT [] synonym: "G-protein coupled receptor PGR20" EXACT [] synonym: "GPR111" RELATED Gene-based [PRO:DNx] @@ -93442,6 +93654,9 @@ namespace: protein def: "A protein that is a translation product of the human DNAJC16 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "DNAJC16" EXACT PRO-short-label [PRO:DNx] +synonym: "endoplasmic reticulum DNA J domain-containing protein 8" EXACT [] +synonym: "ER-resident protein ERdj8" EXACT [] +synonym: "ERDJ8" RELATED Gene-based [] synonym: "KIAA0962" RELATED Gene-based [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9Y2G8 @@ -95095,11 +95310,13 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q9H1F0 [Term] id: PR:000032654 -name: acidic leucine-rich nuclear phosphoprotein 32 family member C +name: putative uncharacterized protein ANP32CP namespace: protein def: "A protein that is a translation product of the human ANP32C gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. +synonym: "acidic leucine-rich nuclear phosphoprotein 32 family member C" EXACT [] synonym: "ANP32C" EXACT PRO-short-label [PRO:DNx] +synonym: "ANP32CP" RELATED Gene-based [] synonym: "phosphoprotein 32-related protein 1" EXACT [] synonym: "PP32R1" RELATED Gene-based [] synonym: "tumorigenic protein pp32r1" EXACT [] @@ -95529,14 +95746,49 @@ def: "A protein that consists of a core domain composition consisting of a the M comment: Category=family. is_a: PR:000000001 ! protein +[Term] +id: PR:000035702 +name: CD14 molecule cleaved 2 GPI-anchored form (human) +namespace: protein +def: "A CD14 molecule cleaved 2 GPI-anchored form in human. UniProtKB:P08571, 20-345, Asn-345, MOD:00167." [Reactome:R-HSA-166033, Reactome:R-HSA-2201284] +comment: Category=organism-modification. +synonym: "GPI-anchored form of CD14 (human)" EXACT [Reactome:R-HSA-166033, Reactome:R-HSA-2201284] +synonym: "GPI-N345-CD14 (human)" EXACT [Reactome:R-HSA-166033, Reactome:R-HSA-2201284] +synonym: "hCD14/Clv:2/anchored" EXACT PRO-short-label [PRO:DAN] +synonym: "PRO_0000020885, Asn-345, MOD:00167" EXACT PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P08571, 20-345, Asn-345, MOD:00167" EXACT PRO-proteoform-std [PRO:DNx] +xref: Reactome:R-HSA-166033 "PR:000035702 located_in GO:0005886" +xref: Reactome:R-HSA-2201284 "PR:000035702 located_in GO:0010008" +is_a: PR:000002149 ! CD14 molecule cleaved 2 GPI-anchored form +is_a: PR:000037480 ! CD14 molecule cleaved 2 (human) +intersection_of: PR:000002149 ! CD14 molecule cleaved 2 GPI-anchored form +intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: has_part MOD:00167 ! N-asparaginyl-glycosylphosphatidylinositolethanolamine +relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens + +[Term] +id: PR:000035703 +name: CD14 molecule cleaved 2 soluble form (human) +namespace: protein +def: "A CD14 molecule cleaved 2 soluble form in human." [PRO:DNx, UniProtKB:P08571] +comment: Category=organism-modification. +synonym: "hCD14/Clv:2/soluble" EXACT PRO-short-label [PRO:DAN] +synonym: "Secreted form of CD14 (human)" EXACT [Reactome:R-HSA-166025] +xref: Reactome:R-HSA-166025 "PR:000035703 located_in GO:0005576" +is_a: PR:000002147 ! CD14 molecule cleaved 2 soluble form +is_a: PR:000037480 ! CD14 molecule cleaved 2 (human) +intersection_of: PR:000002147 ! CD14 molecule cleaved 2 soluble form +intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens + [Term] id: PR:000035716 name: ubiquitin (RPS27A) namespace: protein -def: "A ubiquitin-40S ribosomal protein S27a that has been processed by proteolytic cleavage. This form is the N-terminal region consisting of the Ubiquitin (Pfam:PF00240) domain. Example: UniProtKB:P62979, 1-76." [PMID:124018, PRO:CNA] +def: "A ubiquitin-ribosomal protein eS31 fusion protein that has been processed by proteolytic cleavage. This form is the N-terminal region consisting of the Ubiquitin (Pfam:PF00240) domain. Example: UniProtKB:P62979, 1-76." [PMID:124018, PRO:CNA] comment: Category=modification. synonym: "RPS27A/Clv:ubiq" EXACT PRO-short-label [PRO:DAN] -is_a: PR:000014271 ! ubiquitin-40S ribosomal protein S27a +is_a: PR:000014271 ! ubiquitin-ribosomal protein eS31 fusion protein is_a: PR:000018264 ! proteolytic cleavage product relationship: output_of GO:0016485 ! protein processing @@ -95556,7 +95808,7 @@ xref: Reactome:R-HSA-939238 "PR:000035717 located_in GO:0010008" xref: Reactome:R-HSA-939849 "PR:000035717 located_in GO:0005654" xref: TDR:1008 is_a: PR:000035716 ! ubiquitin (RPS27A) -is_a: PR:P62979 ! ubiquitin-40S ribosomal protein S27a (human) +is_a: PR:P62979 ! ubiquitin-ribosomal protein eS31 fusion protein (human) intersection_of: PR:000035716 ! ubiquitin (RPS27A) intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -95600,10 +95852,10 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:000035722 name: ubiquitin (UBA52) namespace: protein -def: "A ubiquitin-60S ribosomal protein L40 that has been processed by proteolytic cleavage. This form is the N-terminal region consisting of the Ubiquitin (Pfam:PF00240) domain. Example: UniProtKB:P62987, 1-76." [PRO:CNA] +def: "A ubiquitin-ribosomal protein eL40 fusion protein that has been processed by proteolytic cleavage. This form is the N-terminal region consisting of the Ubiquitin (Pfam:PF00240) domain. Example: UniProtKB:P62987, 1-76." [PRO:CNA] comment: Category=modification. synonym: "UBA52/Clv:ubiq" EXACT PRO-short-label [PRO:DAN] -is_a: PR:000016954 ! ubiquitin-60S ribosomal protein L40 +is_a: PR:000016954 ! ubiquitin-ribosomal protein eL40 fusion protein is_a: PR:000018264 ! proteolytic cleavage product relationship: output_of GO:0016485 ! protein processing @@ -95623,7 +95875,7 @@ xref: Reactome:R-HSA-939236 "PR:000035723 located_in GO:0030666" xref: Reactome:R-HSA-939844 "PR:000035723 located_in GO:0005654" xref: TDR:12306 is_a: PR:000035722 ! ubiquitin (UBA52) -is_a: PR:P62987 ! ubiquitin-60S ribosomal protein L40 (human) +is_a: PR:P62987 ! ubiquitin-ribosomal protein eL40 fusion protein (human) intersection_of: PR:000035722 ! ubiquitin (UBA52) intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -95984,6 +96236,62 @@ intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:95777 ! Gnas (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: PR:000036615 +name: CD14 molecule cleaved 1 soluble form (human) +namespace: protein +def: "A CD14 molecule cleaved 1 soluble form in human. UniProtKB:P08571, 20-367." [PMID:7519994, PRO:CNA] +comment: Category=organism-modification. +synonym: "hCD14/Clv:1/soluble" EXACT PRO-short-label [PRO:DNx] +synonym: "PRO_0000020884" EXACT PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P08571, 20-367" EXACT PRO-proteoform-std [PRO:DNx] +is_a: PR:000002146 ! CD14 molecule cleaved 1 soluble form +is_a: PR:P08571 ! monocyte differentiation antigen CD14 (human) +intersection_of: PR:000002146 ! CD14 molecule cleaved 1 soluble form +intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens + +[Term] +id: PR:000036848 +name: CD14 molecule cleaved 2 +namespace: protein +def: "A CD14 molecule, signal peptide removed form that lacks the propeptide. Example: UniProtKB:P08571, 20-345." [PRO:DAN] +comment: Category=modification. +synonym: "CD14/Clv:2" EXACT PRO-short-label [PRO:DAN] +is_a: PR:000018574 ! CD14 molecule, signal peptide removed form +intersection_of: PR:000018574 ! CD14 molecule, signal peptide removed form +intersection_of: lacks_part SO:0001062 ! propeptide +relationship: lacks_part SO:0001062 ! propeptide + +[Term] +id: PR:000036849 +name: CD14 molecule cleaved and soluble form +namespace: protein +def: "A CD14 molecule, signal peptide removed form that has been processed by proteolytic cleavage to yield the N-terminal domain lacking a GPI-anchor." [PRO:DAN] +comment: Category=modification. +synonym: "CD14/ClvPrd/soluble" EXACT PRO-short-label [PRO:DAN] +is_a: PR:000018264 ! proteolytic cleavage product +is_a: PR:000018574 ! CD14 molecule, signal peptide removed form +union_of: PR:000002146 ! CD14 molecule cleaved 1 soluble form +union_of: PR:000002147 ! CD14 molecule cleaved 2 soluble form +relationship: lacks_part MOD:00818 ! glycosylphosphatidylinositolated residue +relationship: output_of GO:0016485 ! protein processing + +[Term] +id: PR:000036850 +name: CD14 molecule cleaved and soluble form (mouse) +namespace: protein +def: "A CD14 molecule cleaved and soluble form in mouse." [PRO:DAN] +comment: Category=organism-modification. +synonym: "mCD14/ClvPrd/soluble" EXACT PRO-short-label [PRO:DAN] +is_a: PR:000036849 ! CD14 molecule cleaved and soluble form +is_a: PR:P10810 ! monocyte differentiation antigen CD14 (mouse) +intersection_of: PR:000036849 ! CD14 molecule cleaved and soluble form +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +union_of: PR:000029986 ! CD14 molecule cleaved 2 soluble form (mouse) +union_of: PR:000037469 ! CD14 molecule cleaved 1 soluble form (mouse) +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: PR:000036864 name: neurexin-2-beta @@ -96057,6 +96365,39 @@ intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=7991 ! NRXN3 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: PR:000036945 +name: CD14 molecule cleaved and soluble form (human) +namespace: protein +def: "A CD14 molecule cleaved and soluble form in human." [PRO:DAN] +comment: Category=organism-modification. +synonym: "hCD14/ClvPrd/soluble" EXACT PRO-short-label [PRO:DAN] +is_a: PR:000036849 ! CD14 molecule cleaved and soluble form +is_a: PR:P08571 ! monocyte differentiation antigen CD14 (human) +intersection_of: PR:000036849 ! CD14 molecule cleaved and soluble form +intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens +union_of: PR:000035703 ! CD14 molecule cleaved 2 soluble form (human) +union_of: PR:000036615 ! CD14 molecule cleaved 1 soluble form (human) +relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens + +[Term] +id: PR:000036946 +name: CD14 molecule cleaved 2 (mouse) +namespace: protein +def: "A CD14 molecule cleaved 2 in mouse. This represents both the GPI-anchored and soluble forms. UniProtKB:P10810, 16-336." [PRO:DAN] +comment: Category=organism-modification. +synonym: "CD14 molecule (mouse)" RELATED [PRO:DAN] +synonym: "mCD14/Clv:2" EXACT PRO-short-label [PRO:DAN] +synonym: "PRO_0000020887" EXACT PRO-proteoform-ftid [PRO:DAN, UniProtKB:P10810] +synonym: "UniProtKB:P10810, 16-336" EXACT PRO-proteoform-std [PRO:DAN, UniProtKB:P10810] +is_a: PR:000036848 ! CD14 molecule cleaved 2 +is_a: PR:P10810 ! monocyte differentiation antigen CD14 (mouse) +intersection_of: PR:000036848 ! CD14 molecule cleaved 2 +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +union_of: PR:000029986 ! CD14 molecule cleaved 2 soluble form (mouse) +union_of: PR:000037470 ! CD14 molecule cleaved 2 GPI-anchored form (mouse) +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: PR:000036947 name: T-cell surface glycoprotein CD1 (human) @@ -96241,10 +96582,10 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:000037260 name: cochlin, signal peptide removed form (mouse) namespace: protein -def: "A cochlin (mouse) that the signal peptide has been removed. UniProtKB:Q62507, 26-552." [PMID:23684986, PRO:KRC] +def: "A cochlin (mouse) that the signal peptide has been removed. UniProtKB:Q62507, 27-552." [PMID:23684986, PRO:KRC] comment: Category=organism-modification. Evidence=(ECO:0000305, based on UniProtKB:Q62507, PMID:23684986). synonym: "mCOCH/SigPep-" EXACT PRO-short-label [PRO:DAN] -synonym: "UniProtKB:Q62507, 26-552" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:Q62507, 27-552" EXACT PRO-proteoform-std [PRO:DNx] is_a: PR:Q62507 ! cochlin (mouse) intersection_of: PR:Q62507 ! cochlin (mouse) intersection_of: lacks_part SO:0000418 ! signal_peptide @@ -96298,6 +96639,7 @@ namespace: protein def: "A Toll-like receptor 3, signal peptide removed form in human. Example: UniProtKB:O15455-1, 24-904." [PMID:15340161, PRO:CNA, Reactome:R-HSA-1678955, Reactome:R-HSA-1679057, Reactome:R-HSA-167941, Reactome:R-HSA-2000341] comment: Category=organism-modification. synonym: "hTLR3/SigPep-" EXACT PRO-short-label [PRO:DNx] +synonym: "UniProtKB:O15455, 24-904" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:O15455-1, 24-904" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-1678955 "PR:000037305 located_in GO:0000139" xref: Reactome:R-HSA-1679057 "PR:000037305 located_in GO:0005789" @@ -96309,6 +96651,56 @@ intersection_of: PR:000018357 ! Toll-like receptor 3, signal peptide removed for intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: PR:000037469 +name: CD14 molecule cleaved 1 soluble form (mouse) +namespace: protein +def: "A CD14 molecule cleaved 1 soluble form in mouse. UniProtKB:P10810, 16-358." [PMID:10601848, PMID:18606699, PRO:CNA] +comment: Category=organism-modification. Note: The coordinates of the soluble form shown in the example were added based on similarity to the human soluble form corresponding to PR:000002146 [PRO:DAN]. +synonym: "mCD14/Clv:1/soluble" EXACT PRO-short-label [PRO:DAN] +synonym: "Secreted CD14 (mouse)" EXACT [] +synonym: "UniProtKB:P10810, 16-358" EXACT PRO-proteoform-std [PRO:DNx] +is_a: PR:000002146 ! CD14 molecule cleaved 1 soluble form +is_a: PR:P10810 ! monocyte differentiation antigen CD14 (mouse) +intersection_of: PR:000002146 ! CD14 molecule cleaved 1 soluble form +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + +[Term] +id: PR:000037470 +name: CD14 molecule cleaved 2 GPI-anchored form (mouse) +namespace: protein +def: "A CD14 molecule cleaved 2 GPI-anchored form in mouse. UniProtKB:P10810, 16-336, Asn-336, MOD:00167." [PMID:10601848, PMID:18606699, PRO:CNA] +comment: Category=organism-modification. Note: The coordinates of the GPI-anchored form shown are based on similarity to the human anchored form PR:000035702 [PRO:DAN]. +synonym: "GPI-anchored CD14 (mouse)" BROAD [PRO:DNx] +synonym: "mCD14/Clv:2/anchored" EXACT PRO-short-label [PRO:DAN] +synonym: "PRO_0000020887, Asn-336, MOD:00167" EXACT PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P10810, 16-336, Asn-336, MOD:00167" EXACT PRO-proteoform-std [PRO:DNx] +is_a: PR:000002149 ! CD14 molecule cleaved 2 GPI-anchored form +is_a: PR:000036946 ! CD14 molecule cleaved 2 (mouse) +intersection_of: PR:000002149 ! CD14 molecule cleaved 2 GPI-anchored form +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: has_part MOD:00167 ! N-asparaginyl-glycosylphosphatidylinositolethanolamine +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + +[Term] +id: PR:000037480 +name: CD14 molecule cleaved 2 (human) +namespace: protein +def: "A CD14 molecule cleaved 2 in human. This represents both the GPI-anchored and soluble forms. UniProtKB:P08571, 20-345." [PRO:CNA, PRO:DAN] +comment: Category=organism-modification. +synonym: "CD14 molecule (human)" RELATED [PRO:CNA] +synonym: "hCD14/Clv:2" EXACT PRO-short-label [PRO:DAN] +synonym: "PRO_0000020885" EXACT PRO-proteoform-ftid [PRO:DAN, UniProtKB:P08571] +synonym: "UniProtKB:P08571, 20-345" EXACT PRO-proteoform-std [PRO:DAN, UniProtKB:P08571] +is_a: PR:000036848 ! CD14 molecule cleaved 2 +is_a: PR:P08571 ! monocyte differentiation antigen CD14 (human) +intersection_of: PR:000036848 ! CD14 molecule cleaved 2 +intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens +union_of: PR:000035702 ! CD14 molecule cleaved 2 GPI-anchored form (human) +union_of: PR:000035703 ! CD14 molecule cleaved 2 soluble form (human) +relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens + [Term] id: PR:000037789 name: Toll-like receptor 3, signal peptide removed form (mouse) @@ -96331,6 +96723,8 @@ namespace: protein def: "A Toll-like receptor 3, signal peptide removed form in chicken. Example: UniProtKB:Q0PQ88-1, 27-896." [ECO:0000250, PRO:CNA] comment: Category=organism-modification. Evidence=(ECO:0000250, based on PR:000037305). synonym: "chick-TLR3/SigPep-" EXACT PRO-short-label [PRO:DAN] +synonym: "PRO_5010134129" EXACT PRO-proteoform-ftid [PRO:DAN] +synonym: "UniProtKB:Q0PQ88, 27-896" EXACT PRO-proteoform-std [PRO:DAN] synonym: "UniProtKB:Q0PQ88-1, 27-896" NARROW PRO-proteoform-std [PRO:DAN] is_a: PR:000018357 ! Toll-like receptor 3, signal peptide removed form is_a: PR:Q0PQ88 ! Toll-like receptor 3 (chicken) @@ -96566,6 +96960,7 @@ def: "A ubiquitin-conjugating enzyme E2 E1 (human) that has had the initiator me comment: Category=organism-modification. synonym: "hUBE2E1/InitMet-" EXACT PRO-short-label [PRO:DAN] synonym: "PRO_0000082470" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P51965, 2-193" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P51965-1, 2-193" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-174063 "PR:000040911 located_in GO:0005654" xref: Reactome:R-HSA-174100 "PR:000040911 located_in GO:0005829" @@ -96603,6 +96998,7 @@ def: "An ATP-dependent 6-phosphofructokinase, muscle type (human) that has had t comment: Category=organism-modification. synonym: "hPFKM/InitMet-" EXACT PRO-short-label [PRO:DAN] synonym: "PRO_0000112016" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P08237, 2-780" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P08237-1, 2-780" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-70460 "PR:000041555 located_in GO:0005829" is_a: PR:P08237 ! ATP-dependent 6-phosphofructokinase, muscle type (human) @@ -96619,6 +97015,7 @@ def: "An integrin beta-3 (human) that has the signal peptide removed. Example: U comment: Category=organism-modification. synonym: "hITGB3/SigPep-" EXACT PRO-short-label [PRO:DAN] synonym: "PRO_0000016344" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P05106, 27-788" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P05106-1, 27-788" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-57600 "PR:000041631 located_in GO:0005886" is_a: PR:P05106 ! integrin beta-3 (human) @@ -96651,6 +97048,7 @@ def: "A 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 (human) that has comment: Category=organism-modification. synonym: "hPFKFB1/InitMet-" EXACT PRO-short-label [PRO:DAN] synonym: "PRO_0000179960" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P16118, 2-471" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P16118-1, 2-471" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-71785 "PR:000042034 located_in GO:0005829" is_a: PR:P16118 ! 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 (human) @@ -96667,6 +97065,7 @@ def: "A mitotic spindle assembly checkpoint protein MAD2A (human) that has had t comment: Category=organism-modification. synonym: "hMAD2L1/InitMet-" EXACT PRO-short-label [PRO:DAN] synonym: "PRO_0000126117" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:Q13257, 2-205" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:Q13257-1, 2-205" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-141400 "PR:000042259 located_in GO:0005829" xref: Reactome:R-HSA-141447 "PR:000042259 located_in GO:0005829" @@ -96715,6 +97114,7 @@ def: "A neuronal acetylcholine receptor subunit alpha-7, signal peptide removed comment: Category=organism-modification. synonym: "hCHRNA7/SigPep-" EXACT PRO-short-label [PRO:DAN] synonym: "PRO_0000000366" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P36544, 23-502" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P36544-1, 23-502" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-507830 "PR:000044063 located_in GO:0005886" is_a: PR:000044062 ! neuronal acetylcholine receptor subunit alpha-7, signal peptide removed form @@ -96869,8 +97269,8 @@ synonym: "fam:vgate_ion_chan" EXACT PRO-short-label [PRO:DAN] xref: IUPHARfam:696 is_a: PR:000049983 ! ion channel protein intersection_of: PR:000049983 ! ion channel protein -intersection_of: capable_of GO:0005244 ! voltage-gated ion channel activity -relationship: capable_of GO:0005244 ! voltage-gated ion channel activity +intersection_of: capable_of GO:0005244 ! voltage-gated monoatomic ion channel activity +relationship: capable_of GO:0005244 ! voltage-gated monoatomic ion channel activity [Term] id: PR:000044633 @@ -96935,8 +97335,8 @@ synonym: "fam:Na-activ_K_chan" EXACT PRO-short-label [PRO:DAN] synonym: "intracellular sodium activated potassium channel protein" EXACT [PRO:XQ] is_a: PR:000044655 ! potassium channel protein intersection_of: PR:000044655 ! potassium channel protein -intersection_of: capable_of GO:0005228 ! intracellular sodium activated potassium channel activity -relationship: capable_of GO:0005228 ! intracellular sodium activated potassium channel activity +intersection_of: capable_of GO:0005228 ! intracellular sodium-activated potassium channel activity +relationship: capable_of GO:0005228 ! intracellular sodium-activated potassium channel activity [Term] id: PR:000044651 @@ -97026,8 +97426,8 @@ synonym: "ionotropic receptor" NARROW [PRO:XQ] xref: IUPHARfam:697 is_a: PR:000049983 ! ion channel protein intersection_of: PR:000049983 ! ion channel protein -intersection_of: capable_of GO:0015276 ! ligand-gated ion channel activity -relationship: capable_of GO:0015276 ! ligand-gated ion channel activity +intersection_of: capable_of GO:0015276 ! ligand-gated monoatomic ion channel activity +relationship: capable_of GO:0015276 ! ligand-gated monoatomic ion channel activity [Term] id: PR:000044672 @@ -97170,6 +97570,7 @@ def: "A platelet-derived growth factor subunit A mature form in human. Example: comment: Category=organism-modification. synonym: "hPDGFA/mature" EXACT PRO-short-label [PRO:DAN] synonym: "PRO_0000023357" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P04085, 87-211" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P04085-1, 87-211" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-184199 "PR:000044752 located_in GO:0005576" xref: Reactome:R-HSA-184205 "PR:000044752 located_in GO:0031093" @@ -97188,6 +97589,7 @@ def: "A platelet-derived growth factor subunit B mature form in human. Example: comment: Category=organism-modification. synonym: "hPDGFB/mature" EXACT PRO-short-label [PRO:DAN] synonym: "PRO_0000023372" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P01127, 82-190" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P01127-1, 82-190" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-184201 "PR:000044753 located_in GO:0005576" is_a: PR:000044751 ! platelet-derived growth factor subunit B mature form @@ -97297,7 +97699,6 @@ name: glycoprotein hormone beta chain namespace: protein def: "A protein that has a core domain composition consisting of a signal peptide followed by a single copy of the Cys_knot (Pfam:PF00007) domain. The Cysteine knot is a protein structural motif containing three disulfide bridges." [Pfam:PF00007, PRO:CNA] comment: Category=family. -xref: PANTHER:PTHR11515 is_a: PR:000000001 ! protein [Term] @@ -97308,6 +97709,7 @@ def: "An ATPase inhibitor, mitochondrial, transit peptide removed form in human. comment: Category=organism-modification. synonym: "hATP5IF1/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000002547" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:Q9UII2, 26-106" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:Q9UII2-1, 26-106" NARROW PRO-proteoform-std [PRO:DNx] is_a: PR:000026642 ! ATPase inhibitor, mitochondrial, transit peptide removed form is_a: PR:Q9UII2 ! ATPase inhibitor, mitochondrial (human) @@ -97940,15 +98342,15 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000046309 name: aldehyde dehydrogenase family 1 member A3, initiator methionine removed form (human) namespace: protein -def: "An aldehyde dehydrogenase family 1 member A3 (human) that has had the initiator methionine removed. UniProtKB:P47895, 2-512." [PRO:DNx, Reactome:R-HSA-2980896] +def: "A retinaldehyde dehydrogenase 3 (human) that has had the initiator methionine removed. UniProtKB:P47895, 2-512." [PRO:DNx, Reactome:R-HSA-2980896] comment: Category=organism-modification. synonym: "hALDH1A3/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000056478" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P47895, 2-512" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-2980896 "PR:000046309 located_in GO:0005829" -is_a: PR:000018952 ! aldehyde dehydrogenase family 1 member A3, initiator methionine removed form -is_a: PR:P47895 ! aldehyde dehydrogenase family 1 member A3 (human) -intersection_of: PR:P47895 ! aldehyde dehydrogenase family 1 member A3 (human) +is_a: PR:000018952 ! retinaldehyde dehydrogenase 3, initiator methionine removed form +is_a: PR:P47895 ! retinaldehyde dehydrogenase 3 (human) +intersection_of: PR:P47895 ! retinaldehyde dehydrogenase 3 (human) intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -98020,16 +98422,16 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:000046315 -name: methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial, transit peptide removed form (human) +name: methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial, transit peptide removed form (human) namespace: protein -def: "A methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q02252, 34-535." [PRO:DNx, Reactome:R-HSA-70890] +def: "A methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q02252, 34-535." [PRO:DNx, Reactome:R-HSA-70890] comment: Category=organism-modification. synonym: "hALDH6A1/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000007189" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q02252, 34-535" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-70890 "PR:000046315 located_in GO:0005759" -is_a: PR:Q02252 ! methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (human) -intersection_of: PR:Q02252 ! methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (human) +is_a: PR:Q02252 ! methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial (human) +intersection_of: PR:Q02252 ! methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial (human) intersection_of: lacks_part SO:0000725 ! transit_peptide relationship: lacks_part SO:0000725 ! transit_peptide relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -98126,11 +98528,15 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000046331 name: alpha-amylase 1, signal peptide removed form (human) namespace: protein -def: "An alpha-amylase 1 (human) that has had the signal peptide removed. UniProtKB:P04745, 16-511." [PRO:DNx, Reactome:R-HSA-189050] +def: "An alpha-amylase 1 (human) that has had the signal peptide removed. Example: UniProtKB:P0DUB6, 16-511." [PRO:DNx, Reactome:R-HSA-189050] comment: Category=organism-modification. synonym: "hAMY1/SigPep-" EXACT PRO-short-label [PRO:DNx] -synonym: "PRO_0000001401" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:P04745, 16-511" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "PRO_0000001401" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "PRO_0000450820" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "PRO_0000450821" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P0DTE7, 16-511" NARROW PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:P0DTE8, 16-511" NARROW PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:P0DUB6, 16-511" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-189050 "PR:000046331 located_in GO:0005576" is_a: PR:000019103 ! alpha-amylase 1, signal peptide removed form is_a: PR:P04745 ! alpha-amylase 1 (human) @@ -99407,11 +99813,11 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000046565 name: F-actin-capping protein subunit beta, initiator methionine removed form (human) namespace: protein -def: "An F-actin-capping protein subunit beta (human) that has had the initiator methionine removed. UniProtKB:P47756, 2-277." [PRO:DNx, Reactome:R-HSA-879409] +def: "An F-actin-capping protein subunit beta (human) that has had the initiator methionine removed. UniProtKB:P47756, 2-272." [PRO:DNx, Reactome:R-HSA-879409] comment: Category=organism-modification. synonym: "hCAPZB/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000204634" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:P47756, 2-277" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:P47756, 2-272" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-879409 "PR:000046565 located_in GO:0005829" is_a: PR:000019237 ! F-actin-capping protein subunit beta, initiator methionine removed form is_a: PR:P47756 ! F-actin-capping protein subunit beta (human) @@ -99763,11 +100169,13 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000046620 name: cell surface glycoprotein CD200 receptor 1, signal peptide removed form (human) namespace: protein -def: "A cell surface glycoprotein CD200 receptor 1 (human) that has had the signal peptide removed. UniProtKB:Q8TD46, 29-325." [PRO:DNx, Reactome:R-HSA-197761] +def: "A cell surface glycoprotein CD200 receptor 1 (human) that has had the signal peptide removed. Example: UniProtKB:Q8TD46-1, 29-325." [PRO:DNx, Reactome:R-HSA-197761] comment: Category=organism-modification. synonym: "hCD200R1/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000015128" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:Q8TD46, 29-325" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:Q8TD46, 27-325" EXACT PRO-proteoform-std [PRO:DAN] +synonym: "UniProtKB:Q8TD46-1, 29-325" NARROW PRO-proteoform-std [PRO:DAN] +synonym: "UniProtKB:Q8TD46-4, 27-325" NARROW PRO-proteoform-std [PRO:DAN] xref: Reactome:R-HSA-197761 "PR:000046620 located_in GO:0005886" is_a: PR:Q8TD46 ! cell surface glycoprotein CD200 receptor 1 (human) intersection_of: PR:Q8TD46 ! cell surface glycoprotein CD200 receptor 1 (human) @@ -100315,6 +100723,7 @@ synonym: "hCES1/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000391359" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P23141, 18-567" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-2429659 "PR:000046690 located_in GO:0005788" +xref: Reactome:R-HSA-9727618 "PR:000046690 located_in GO:0005811" is_a: PR:000019301 ! liver carboxylesterase 1, signal peptide removed form is_a: PR:P23141 ! liver carboxylesterase 1 (human) intersection_of: PR:P23141 ! liver carboxylesterase 1 (human) @@ -101073,6 +101482,7 @@ synonym: "PRO_0000004401" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:O75976, 32-1380" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-432671 "PR:000047057 located_in GO:0030659" xref: Reactome:R-HSA-432675 "PR:000047057 located_in GO:0000139" +xref: Reactome:R-HSA-9715182 "PR:000047057 located_in GO:0005886" is_a: PR:O75976 ! carboxypeptidase D (human) intersection_of: PR:O75976 ! carboxypeptidase D (human) intersection_of: lacks_part SO:0000418 ! signal_peptide @@ -101239,11 +101649,11 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000047086 name: granulocyte colony-stimulating factor, signal peptide removed form (human) namespace: protein -def: "A granulocyte colony-stimulating factor (human) that has had the signal peptide removed. UniProtKB:P09919, 30-207." [PRO:DNx, Reactome:R-HSA-5432997] +def: "A granulocyte colony-stimulating factor (human) that has had the signal peptide removed. UniProtKB:P09919, 31-207." [PRO:DNx, Reactome:R-HSA-5432997] comment: Category=organism-modification. synonym: "hCSF3/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000015570" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:P09919, 30-207" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:P09919, 31-207" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-5432997 "PR:000047086 located_in GO:0005576" is_a: PR:000019519 ! granulocyte colony-stimulating factor, signal peptide removed form is_a: PR:P09919 ! granulocyte colony-stimulating factor (human) @@ -101517,6 +101927,7 @@ synonym: "hDBT/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000020489" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P11182, 62-482" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-6792584 "PR:000047137 located_in GO:0005759" +xref: Reactome:R-HSA-9714663 "PR:000047137 located_in GO:0005829" is_a: PR:P11182 ! lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial (human) intersection_of: PR:P11182 ! lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial (human) intersection_of: lacks_part SO:0000725 ! transit_peptide @@ -101617,6 +102028,7 @@ synonym: "hDDX39B/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000055071" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q13838, 2-428" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-8849139 "PR:000047157 located_in GO:0005654" +xref: Reactome:R-HSA-9715154 "PR:000047157 located_in GO:0005829" is_a: PR:000019117 ! spliceosome RNA helicase BAT1, initiator methionine removed form is_a: PR:Q13838 ! spliceosome RNA helicase DDX39B (human) intersection_of: PR:Q13838 ! spliceosome RNA helicase DDX39B (human) @@ -102289,6 +102701,7 @@ comment: Category=organism-modification. synonym: "hEPHA2/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000016800" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P29317, 24-976" EXACT PRO-proteoform-std [PRO:DNx] +xref: Reactome:R-HSA-211422 "PR:000047291 located_in GO:0005886" xref: Reactome:R-HSA-2682326 "PR:000047291 located_in GO:0005886" is_a: PR:P29317 ! ephrin type-A receptor 2 (human) intersection_of: PR:P29317 ! ephrin type-A receptor 2 (human) @@ -102626,6 +103039,7 @@ xref: Reactome:R-HSA-54601 "PR:000047356 located_in GO:0005576" xref: Reactome:R-HSA-5689449 "PR:000047356 located_in GO:0005788" xref: Reactome:R-HSA-5689796 "PR:000047356 located_in GO:0030134" xref: Reactome:R-HSA-5689798 "PR:000047356 located_in GO:0033116" +xref: Reactome:R-HSA-9668037 "PR:000047356 located_in GO:0005796" is_a: PR:000019840 ! coagulation factor VIII, signal peptide removed form is_a: PR:P00451 ! coagulation factor VIII (human) intersection_of: PR:P00451 ! coagulation factor VIII (human) @@ -102839,11 +103253,11 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000047394 name: ferredoxin-2, mitochondrial, transit peptide removed form (human) namespace: protein -def: "A ferredoxin-2, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q6P4F2, 53-183." [PRO:DNx, Reactome:R-HSA-2395506] +def: "A ferredoxin-2, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q6P4F2, 56-186." [PRO:DNx, Reactome:R-HSA-2395506] comment: Category=organism-modification. synonym: "hFDX2/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000325952" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:Q6P4F2, 53-183" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:Q6P4F2, 56-186" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-2395506 "PR:000047394 located_in GO:0005759" is_a: PR:Q6P4F2 ! ferredoxin-2, mitochondrial (human) intersection_of: PR:Q6P4F2 ! ferredoxin-2, mitochondrial (human) @@ -103593,11 +104007,11 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000047512 name: glycine amidinotransferase, mitochondrial, transit peptide removed form (human) namespace: protein -def: "A glycine amidinotransferase, mitochondrial (human) that has had the transit peptide removed. UniProtKB:P50440, 38-423." [PRO:DNx, Reactome:R-HSA-71267] +def: "A glycine amidinotransferase, mitochondrial (human) that has had the transit peptide removed. UniProtKB:P50440, 44-423." [PRO:DNx, Reactome:R-HSA-71267] comment: Category=organism-modification. synonym: "hGATM/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000001206" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:P50440, 38-423" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:P50440, 44-423" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-71267 "PR:000047512 located_in GO:0005758" is_a: PR:P50440 ! glycine amidinotransferase, mitochondrial (human) intersection_of: PR:P50440 ! glycine amidinotransferase, mitochondrial (human) @@ -104797,6 +105211,7 @@ synonym: "hHNRNPC/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000081844" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P07910, 2-306" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-71933 "PR:000047885 located_in GO:0005654" +xref: Reactome:R-HSA-9715136 "PR:000047885 located_in GO:0005829" is_a: PR:000020169 ! heterogeneous nuclear ribonucleoproteins C1/C2, initiator methionine removed form is_a: PR:P07910 ! heterogeneous nuclear ribonucleoproteins C1/C2 (human) intersection_of: PR:P07910 ! heterogeneous nuclear ribonucleoproteins C1/C2 (human) @@ -105123,7 +105538,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000047940 name: peptidyl-tRNA hydrolase ICT1, mitochondrial, transit peptide removed form (human) namespace: protein -def: "A peptidyl-tRNA hydrolase ICT1, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q14197, 30-206." [PRO:DNx, Reactome:R-HSA-5368175, Reactome:R-HSA-5624366] +def: "A large ribosomal subunit protein mL62 (human) that has had the transit peptide removed. UniProtKB:Q14197, 30-206." [PRO:DNx, Reactome:R-HSA-5368175, Reactome:R-HSA-5624366] comment: Category=organism-modification. synonym: "hMRPL58/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000030339" EXACT PRO-proteoform-ftid [PRO:DNx] @@ -105131,8 +105546,8 @@ synonym: "UniProtKB:Q14197, 30-206" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-5368175 "PR:000047940 located_in GO:0005759" xref: Reactome:R-HSA-5624366 "PR:000047940 located_in GO:0005743" xref: TDR:15051 -is_a: PR:Q14197 ! peptidyl-tRNA hydrolase ICT1, mitochondrial (human) -intersection_of: PR:Q14197 ! peptidyl-tRNA hydrolase ICT1, mitochondrial (human) +is_a: PR:Q14197 ! large ribosomal subunit protein mL62 (human) +intersection_of: PR:Q14197 ! large ribosomal subunit protein mL62 (human) intersection_of: lacks_part SO:0000725 ! transit_peptide relationship: lacks_part SO:0000725 ! transit_peptide relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -106923,11 +107338,11 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000048206 name: leukocyte immunoglobulin-like receptor subfamily B member 2, signal peptide removed form (human) namespace: protein -def: "A leukocyte immunoglobulin-like receptor subfamily B member 2 (human) that has had the signal peptide removed. UniProtKB:Q8N423, 22-598." [PRO:DNx, Reactome:R-HSA-197725] +def: "A leukocyte immunoglobulin-like receptor subfamily B member 2 (human) that has had the signal peptide removed. UniProtKB:Q8N423, 22-597." [PRO:DNx, Reactome:R-HSA-197725] comment: Category=organism-modification. synonym: "hLILRB2/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000014821" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:Q8N423, 22-598" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:Q8N423, 22-597" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-197725 "PR:000048206 located_in GO:0005886" xref: Reactome:R-HSA-6801373 "PR:000048206 located_in GO:0101003" xref: Reactome:R-HSA-6801392 "PR:000048206 located_in GO:0070821" @@ -107062,6 +107477,7 @@ synonym: "UniProtKB:P49257, 31-510" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-1017222 "PR:000048226 located_in GO:0012507" xref: Reactome:R-HSA-5689463 "PR:000048226 located_in GO:0005789" xref: Reactome:R-HSA-5689821 "PR:000048226 located_in GO:0033116" +xref: Reactome:R-HSA-9715113 "PR:000048226 located_in GO:0000139" is_a: PR:000020478 ! protein ERGIC-53, signal peptide removed form is_a: PR:P49257 ! protein ERGIC-53 (human) intersection_of: PR:P49257 ! protein ERGIC-53 (human) @@ -107464,6 +107880,7 @@ synonym: "hLY96/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000018619" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q9Y6Y9, 19-160" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-2201307 "PR:000048277 located_in GO:0010008" +xref: Reactome:R-HSA-9707658 "PR:000048277 located_in GO:0005576" is_a: PR:Q9Y6Y9 ! lymphocyte antigen 96 (human) intersection_of: PR:Q9Y6Y9 ! lymphocyte antigen 96 (human) intersection_of: lacks_part SO:0000418 ! signal_peptide @@ -108090,32 +108507,32 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:000048417 -name: 39S ribosomal protein L1, mitochondrial, transit peptide removed form (human) +name: large ribosomal subunit protein uL1m, transit peptide removed form (human) namespace: protein -def: "A 39S ribosomal protein L1, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q9BYD6, 51-325." [PRO:DNx, Reactome:R-HSA-5368196] +def: "A large ribosomal subunit protein uL1m (human) that has had the transit peptide removed. UniProtKB:Q9BYD6, 51-325." [PRO:DNx, Reactome:R-HSA-5368196] comment: Category=organism-modification. synonym: "hMRPL1/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000252440" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q9BYD6, 51-325" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-5368196 "PR:000048417 located_in GO:0005743" -is_a: PR:Q9BYD6 ! 39S ribosomal protein L1, mitochondrial (human) -intersection_of: PR:Q9BYD6 ! 39S ribosomal protein L1, mitochondrial (human) +is_a: PR:Q9BYD6 ! large ribosomal subunit protein uL1m (human) +intersection_of: PR:Q9BYD6 ! large ribosomal subunit protein uL1m (human) intersection_of: lacks_part SO:0000725 ! transit_peptide relationship: lacks_part SO:0000725 ! transit_peptide relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:000048418 -name: 39S ribosomal protein L10, mitochondrial, transit peptide removed form (human) +name: large ribosomal subunit protein uL10m, transit peptide removed form (human) namespace: protein -def: "A 39S ribosomal protein L10, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q7Z7H8, 29-261." [PRO:DNx, Reactome:R-HSA-5368182] +def: "A large ribosomal subunit protein uL10m (human) that has had the transit peptide removed. UniProtKB:Q7Z7H8, 29-261." [PRO:DNx, Reactome:R-HSA-5368182] comment: Category=organism-modification. synonym: "hMRPL10/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000273075" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q7Z7H8, 29-261" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-5368182 "PR:000048418 located_in GO:0005743" -is_a: PR:Q7Z7H8 ! 39S ribosomal protein L10, mitochondrial (human) -intersection_of: PR:Q7Z7H8 ! 39S ribosomal protein L10, mitochondrial (human) +is_a: PR:Q7Z7H8 ! large ribosomal subunit protein uL10m (human) +intersection_of: PR:Q7Z7H8 ! large ribosomal subunit protein uL10m (human) intersection_of: lacks_part SO:0000725 ! transit_peptide relationship: lacks_part SO:0000725 ! transit_peptide relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -108124,48 +108541,48 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000048419 name: 39S ribosomal protein L12, mitochondrial, transit peptide removed form (human) namespace: protein -def: "A 39S ribosomal protein L12, mitochondrial (human) that has had the transit peptide removed. UniProtKB:P52815, 46-198." [PRO:DNx, Reactome:R-HSA-5368256] +def: "A large ribosomal subunit protein bL12m (human) that has had the transit peptide removed. UniProtKB:P52815, 46-198." [PRO:DNx, Reactome:R-HSA-5368256] comment: Category=organism-modification. synonym: "hMRPL12/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000030458" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P52815, 46-198" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-5368256 "PR:000048419 located_in GO:0005743" xref: TDR:12404 -is_a: PR:P52815 ! 39S ribosomal protein L12, mitochondrial (human) -intersection_of: PR:P52815 ! 39S ribosomal protein L12, mitochondrial (human) +is_a: PR:P52815 ! large ribosomal subunit protein bL12m (human) +intersection_of: PR:P52815 ! large ribosomal subunit protein bL12m (human) intersection_of: lacks_part SO:0000725 ! transit_peptide relationship: lacks_part SO:0000725 ! transit_peptide relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:000048420 -name: 39S ribosomal protein L14, mitochondrial, transit peptide removed form (human) +name: large ribosomal subunit protein uL14m, transit peptide removed form (human) namespace: protein -def: "A 39S ribosomal protein L14, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q6P1L8, 31-145." [PRO:DNx, Reactome:R-HSA-5368219] +def: "A large ribosomal subunit protein uL14m (human) that has had the transit peptide removed. UniProtKB:Q6P1L8, 31-145." [PRO:DNx, Reactome:R-HSA-5368219] comment: Category=organism-modification. synonym: "hMRPL14/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000261134" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q6P1L8, 31-145" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-5368219 "PR:000048420 located_in GO:0005743" xref: TDR:3811 -is_a: PR:Q6P1L8 ! 39S ribosomal protein L14, mitochondrial (human) -intersection_of: PR:Q6P1L8 ! 39S ribosomal protein L14, mitochondrial (human) +is_a: PR:Q6P1L8 ! large ribosomal subunit protein uL14m (human) +intersection_of: PR:Q6P1L8 ! large ribosomal subunit protein uL14m (human) intersection_of: lacks_part SO:0000725 ! transit_peptide relationship: lacks_part SO:0000725 ! transit_peptide relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:000048424 -name: 39S ribosomal protein L2, mitochondrial, transit peptide removed form (human) +name: large ribosomal subunit protein uL2m, transit peptide removed form (human) namespace: protein -def: "A 39S ribosomal protein L2, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q5T653, 61-305." [PRO:DNx, Reactome:R-HSA-5368170] +def: "A large ribosomal subunit protein uL2m (human) that has had the transit peptide removed. UniProtKB:Q5T653, 61-305." [PRO:DNx, Reactome:R-HSA-5368170] comment: Category=organism-modification. synonym: "hMRPL2/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000261640" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q5T653, 61-305" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-5368170 "PR:000048424 located_in GO:0005743" -is_a: PR:Q5T653 ! 39S ribosomal protein L2, mitochondrial (human) -intersection_of: PR:Q5T653 ! 39S ribosomal protein L2, mitochondrial (human) +is_a: PR:Q5T653 ! large ribosomal subunit protein uL2m (human) +intersection_of: PR:Q5T653 ! large ribosomal subunit protein uL2m (human) intersection_of: lacks_part SO:0000725 ! transit_peptide relationship: lacks_part SO:0000725 ! transit_peptide relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -108174,14 +108591,14 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000048426 name: 39S ribosomal protein L21, mitochondrial, transit peptide removed form (human) namespace: protein -def: "A 39S ribosomal protein L21, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q7Z2W9, 40-205." [PRO:DNx, Reactome:R-HSA-5368231] +def: "A large ribosomal subunit protein bL21m (human) that has had the transit peptide removed. UniProtKB:Q7Z2W9, 40-205." [PRO:DNx, Reactome:R-HSA-5368231] comment: Category=organism-modification. synonym: "hMRPL21/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000252442" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q7Z2W9, 40-205" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-5368231 "PR:000048426 located_in GO:0005743" -is_a: PR:Q7Z2W9 ! 39S ribosomal protein L21, mitochondrial (human) -intersection_of: PR:Q7Z2W9 ! 39S ribosomal protein L21, mitochondrial (human) +is_a: PR:Q7Z2W9 ! large ribosomal subunit protein bL21m (human) +intersection_of: PR:Q7Z2W9 ! large ribosomal subunit protein bL21m (human) intersection_of: lacks_part SO:0000725 ! transit_peptide relationship: lacks_part SO:0000725 ! transit_peptide relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -108190,14 +108607,14 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000048429 name: 39S ribosomal protein L28, mitochondrial, transit peptide removed form (human) namespace: protein -def: "A 39S ribosomal protein L28, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q13084, 56-256." [PRO:DNx, Reactome:R-HSA-5368246] +def: "A large ribosomal subunit protein bL28m (human) that has had the transit peptide removed. UniProtKB:Q13084, 56-256." [PRO:DNx, Reactome:R-HSA-5368246] comment: Category=organism-modification. synonym: "hMRPL28/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000030506" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q13084, 56-256" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-5368246 "PR:000048429 located_in GO:0005743" -is_a: PR:Q13084 ! 39S ribosomal protein L28, mitochondrial (human) -intersection_of: PR:Q13084 ! 39S ribosomal protein L28, mitochondrial (human) +is_a: PR:Q13084 ! large ribosomal subunit protein bL28m (human) +intersection_of: PR:Q13084 ! large ribosomal subunit protein bL28m (human) intersection_of: lacks_part SO:0000725 ! transit_peptide relationship: lacks_part SO:0000725 ! transit_peptide relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -108206,14 +108623,14 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000048432 name: 39S ribosomal protein L38, mitochondrial, transit peptide removed form (human) namespace: protein -def: "A 39S ribosomal protein L38, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q96DV4, 27-380." [PRO:DNx, Reactome:R-HSA-5368202] +def: "A large ribosomal subunit protein mL38 (human) that has had the transit peptide removed. UniProtKB:Q96DV4, 27-380." [PRO:DNx, Reactome:R-HSA-5368202] comment: Category=organism-modification. synonym: "hMRPL38/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000261652" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q96DV4, 27-380" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-5368202 "PR:000048432 located_in GO:0005743" -is_a: PR:Q96DV4 ! 39S ribosomal protein L38, mitochondrial (human) -intersection_of: PR:Q96DV4 ! 39S ribosomal protein L38, mitochondrial (human) +is_a: PR:Q96DV4 ! large ribosomal subunit protein mL38 (human) +intersection_of: PR:Q96DV4 ! large ribosomal subunit protein mL38 (human) intersection_of: lacks_part SO:0000725 ! transit_peptide relationship: lacks_part SO:0000725 ! transit_peptide relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -108222,14 +108639,14 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000048439 name: 39S ribosomal protein L52, mitochondrial, transit peptide removed form (human) namespace: protein -def: "A 39S ribosomal protein L52, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q86TS9, 24-123." [PRO:DNx, Reactome:R-HSA-5368187] +def: "A large ribosomal subunit protein mL52 (human) that has had the transit peptide removed. UniProtKB:Q86TS9, 24-123." [PRO:DNx, Reactome:R-HSA-5368187] comment: Category=organism-modification. synonym: "hMRPL52/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000273093" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q86TS9, 24-123" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-5368187 "PR:000048439 located_in GO:0005743" -is_a: PR:Q86TS9 ! 39S ribosomal protein L52, mitochondrial (human) -intersection_of: PR:Q86TS9 ! 39S ribosomal protein L52, mitochondrial (human) +is_a: PR:Q86TS9 ! large ribosomal subunit protein mL52 (human) +intersection_of: PR:Q86TS9 ! large ribosomal subunit protein mL52 (human) intersection_of: lacks_part SO:0000725 ! transit_peptide relationship: lacks_part SO:0000725 ! transit_peptide relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -108238,14 +108655,14 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000048441 name: 39S ribosomal protein L55, mitochondrial, transit peptide removed form (human) namespace: protein -def: "A 39S ribosomal protein L55, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q7Z7F7, 34-128." [PRO:DNx, Reactome:R-HSA-5368252] +def: "A large ribosomal subunit protein mL55 (human) that has had the transit peptide removed. UniProtKB:Q7Z7F7, 34-128." [PRO:DNx, Reactome:R-HSA-5368252] comment: Category=organism-modification. synonym: "hMRPL55/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000273099" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q7Z7F7, 34-128" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-5368252 "PR:000048441 located_in GO:0005743" -is_a: PR:Q7Z7F7 ! 39S ribosomal protein L55, mitochondrial (human) -intersection_of: PR:Q7Z7F7 ! 39S ribosomal protein L55, mitochondrial (human) +is_a: PR:Q7Z7F7 ! large ribosomal subunit protein mL55 (human) +intersection_of: PR:Q7Z7F7 ! large ribosomal subunit protein mL55 (human) intersection_of: lacks_part SO:0000725 ! transit_peptide relationship: lacks_part SO:0000725 ! transit_peptide relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -108550,16 +108967,16 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:000048515 -name: probable asparagine--tRNA ligase, mitochondrial, transit peptide removed form (human) +name: asparaginyl-tRNA synthetase, transit peptide removed form (human) namespace: protein -def: "A probable asparagine--tRNA ligase, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q96I59, 15-477." [PRO:DNx, Reactome:R-HSA-379585] +def: "An asparaginyl-tRNA synthetase (human) that has had the transit peptide removed. UniProtKB:Q96I59, 15-477." [PRO:DNx, Reactome:R-HSA-379585] comment: Category=organism-modification. synonym: "hNARS2/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000250722" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q96I59, 15-477" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-379585 "PR:000048515 located_in GO:0005759" -is_a: PR:Q96I59 ! probable asparagine--tRNA ligase, mitochondrial (human) -intersection_of: PR:Q96I59 ! probable asparagine--tRNA ligase, mitochondrial (human) +is_a: PR:Q96I59 ! asparaginyl-tRNA synthetase (human) +intersection_of: PR:Q96I59 ! asparaginyl-tRNA synthetase (human) intersection_of: lacks_part SO:0000725 ! transit_peptide relationship: lacks_part SO:0000725 ! transit_peptide relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -108672,6 +109089,7 @@ synonym: "hNDUFA5/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000118632" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q16718, 2-116" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-60599 "PR:000048542 located_in GO:0005743" +xref: Reactome:R-HSA-9714749 "PR:000048542 located_in GO:0005789" is_a: PR:Q16718 ! NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 (human) intersection_of: PR:Q16718 ! NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 (human) intersection_of: lacks_part PR:000021937 ! initiator methionine @@ -108932,11 +109350,11 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000048607 name: neuroligin-1, signal peptide removed form (human) namespace: protein -def: "A neuroligin-1 (human) that has had the signal peptide removed. UniProtKB:Q8N2Q7, 46-840." [PRO:DNx, Reactome:R-HSA-6788640] +def: "A neuroligin-1 (human) that has had the signal peptide removed. UniProtKB:Q8N2Q7, 46-863." [PRO:DNx, Reactome:R-HSA-6788640] comment: Category=organism-modification. synonym: "hNLGN1/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000008640" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:Q8N2Q7, 46-840" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:Q8N2Q7, 46-863" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-6788640 "PR:000048607 located_in GO:0005886" is_a: PR:Q8N2Q7 ! neuroligin-1 (human) intersection_of: PR:Q8N2Q7 ! neuroligin-1 (human) @@ -108980,11 +109398,11 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000048614 name: neuromedin-B, signal peptide removed form (human) namespace: protein -def: "A neuromedin-B (human) that has had the signal peptide removed. UniProtKB:Q14956, 22-572." [PRO:DNx, Reactome:R-HSA-8857550] +def: "A neuromedin-B (human) that has had the signal peptide removed. UniProtKB:Q14956, 23-572." [PRO:DNx, Reactome:R-HSA-8857550] comment: Category=organism-modification. synonym: "hNMB/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000024709" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:Q14956, 22-572" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:Q14956, 23-572" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-8857550 "PR:000048614 located_in GO:0005886" is_a: PR:000020754 ! neuromedin-B, signal peptide removed form is_a: PR:P08949 ! neuromedin-B (human) @@ -108997,11 +109415,11 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000048617 name: nucleoside diphosphate kinase, mitochondrial, transit peptide removed form (human) namespace: protein -def: "A nucleoside diphosphate kinase, mitochondrial (human) that has had the transit peptide removed. UniProtKB:O00746, 34-187." [PRO:DNx, Reactome:R-HSA-60026] +def: "A nucleoside diphosphate kinase, mitochondrial (human) that has had the transit peptide removed. UniProtKB:O00746, 29-187." [PRO:DNx, Reactome:R-HSA-60026] comment: Category=organism-modification. synonym: "hNME4/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000019432" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:O00746, 34-187" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:O00746, 29-187" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-60026 "PR:000048617 located_in GO:0005743" is_a: PR:O00746 ! nucleoside diphosphate kinase, mitochondrial (human) intersection_of: PR:O00746 ! nucleoside diphosphate kinase, mitochondrial (human) @@ -109026,17 +109444,17 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:000048622 -name: nitric oxide synthase, endothelial, initiator methionine removed form (human) +name: nitric oxide synthase 3, initiator methionine removed form (human) namespace: protein -def: "A nitric oxide synthase, endothelial (human) that has had the initiator methionine removed. UniProtKB:P29474, 2-1203." [PRO:DNx, Reactome:R-HSA-202114] +def: "A nitric oxide synthase 3 (human) that has had the initiator methionine removed. UniProtKB:P29474, 2-1203." [PRO:DNx, Reactome:R-HSA-202114] comment: Category=organism-modification. synonym: "hNOS3/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000170943" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P29474, 2-1203" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-202114 "PR:000048622 located_in GO:0005829" -is_a: PR:000020762 ! nitric oxide synthase, endothelial, initiator methionine removed form -is_a: PR:P29474 ! nitric oxide synthase, endothelial (human) -intersection_of: PR:P29474 ! nitric oxide synthase, endothelial (human) +is_a: PR:000020762 ! nitric oxide synthase 3, initiator methionine removed form +is_a: PR:P29474 ! nitric oxide synthase 3 (human) +intersection_of: PR:P29474 ! nitric oxide synthase 3 (human) intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -109051,6 +109469,7 @@ synonym: "hNPLOC4/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000057941" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q8TAT6, 2-608" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-5654987 "PR:000048627 located_in GO:0005654" +xref: Reactome:R-HSA-9755492 "PR:000048627 located_in GO:0005829" is_a: PR:000020771 ! nuclear protein localization protein 4, initiator methionine removed form is_a: PR:Q8TAT6 ! nuclear protein localization protein 4 homolog (human) intersection_of: PR:Q8TAT6 ! nuclear protein localization protein 4 homolog (human) @@ -109302,6 +109721,7 @@ synonym: "hOGT/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000191772" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:O15294, 2-1046" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-3321845 "PR:000048665 located_in GO:0005654" +xref: Reactome:R-HSA-9687814 "PR:000048665 located_in GO:0005829" is_a: PR:000020824 ! UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit, initiator methionine removed form is_a: PR:O15294 ! UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (human) intersection_of: PR:O15294 ! UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (human) @@ -109423,6 +109843,7 @@ synonym: "hPABPN1/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000081711" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q86U42, 2-306" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-72008 "PR:000048680 located_in GO:0005654" +xref: Reactome:R-HSA-9822424 "PR:000048680 located_in GO:0005829" is_a: PR:000020859 ! polyadenylate-binding protein 2, initiator methionine removed form is_a: PR:000035930 ! polyadenylate-binding protein 2 (human) intersection_of: PR:000035930 ! polyadenylate-binding protein 2 (human) @@ -109601,11 +110022,11 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000048711 name: programmed cell death protein 1, signal peptide removed form (human) namespace: protein -def: "A programmed cell death protein 1 (human) that has had the signal peptide removed. UniProtKB:Q15116, 21-288." [PRO:DNx, Reactome:R-HSA-197604] +def: "A programmed cell death protein 1 (human) that has had the signal peptide removed. UniProtKB:Q15116, 24-288." [PRO:DNx, Reactome:R-HSA-197604] comment: Category=organism-modification. synonym: "hPDCD1/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000014892" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:Q15116, 21-288" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:Q15116, 24-288" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-197604 "PR:000048711 located_in GO:0005886" is_a: PR:Q15116 ! programmed cell death protein 1 (human) intersection_of: PR:Q15116 ! programmed cell death protein 1 (human) @@ -110497,6 +110918,7 @@ synonym: "hPPIH/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000064162" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:O43447, 2-177" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-6806776 "PR:000048860 located_in GO:0005654" +xref: Reactome:R-HSA-9728791 "PR:000048860 located_in GO:0005829" is_a: PR:O43447 ! peptidyl-prolyl cis-trans isomerase H (human) intersection_of: PR:O43447 ! peptidyl-prolyl cis-trans isomerase H (human) intersection_of: lacks_part PR:000021937 ! initiator methionine @@ -110814,11 +111236,11 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000048962 name: receptor-type tyrosine-protein phosphatase C, signal peptide removed form (human) namespace: protein -def: "A receptor-type tyrosine-protein phosphatase C (human) that has had the signal peptide removed. UniProtKB:P08575, 24-1304." [PRO:DNx, Reactome:R-HSA-197931] +def: "A receptor-type tyrosine-protein phosphatase C (human) that has had the signal peptide removed. UniProtKB:P08575, 26-1304." [PRO:DNx, Reactome:R-HSA-197931] comment: Category=organism-modification. synonym: "hPTPRC/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000025470" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:P08575, 24-1304" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:P08575, 26-1304" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-197931 "PR:000048962 located_in GO:0005886" xref: Reactome:R-HSA-6806150 "PR:000048962 located_in GO:0030667" is_a: PR:000018306 ! receptor-type tyrosine-protein phosphatase C, signal peptide removed form @@ -110893,22 +111315,6 @@ intersection_of: lacks_part SO:0000418 ! signal_peptide relationship: lacks_part SO:0000418 ! signal_peptide relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens -[Term] -id: PR:000048969 -name: peptidyl-tRNA hydrolase 2, mitochondrial, transit peptide removed form (human) -namespace: protein -def: "A peptidyl-tRNA hydrolase 2, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q9Y3E5, 63-179." [PRO:DNx, Reactome:R-HSA-5696909] -comment: Category=organism-modification. -synonym: "hPTRH2/TransPep-" EXACT PRO-short-label [PRO:DNx] -synonym: "PRO_0000029862" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:Q9Y3E5, 63-179" EXACT PRO-proteoform-std [PRO:DNx] -xref: Reactome:R-HSA-5696909 "PR:000048969 located_in GO:0005741" -is_a: PR:Q9Y3E5 ! peptidyl-tRNA hydrolase 2, mitochondrial (human) -intersection_of: PR:Q9Y3E5 ! peptidyl-tRNA hydrolase 2, mitochondrial (human) -intersection_of: lacks_part SO:0000725 ! transit_peptide -relationship: lacks_part SO:0000725 ! transit_peptide -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens - [Term] id: PR:000048970 name: peptidyl-tRNA hydrolase 2, mitochondrial, transit peptide removed ubiquitinated form (human) @@ -110920,7 +111326,7 @@ synonym: "PRO_0000029862, MOD:01148" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:Q9Y3E5, 63-179, MOD:01148" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-6783190 "PR:000048970 located_in GO:0005741" is_a: PR:000037077 ! ubiquitinated protein -is_a: PR:000048969 ! peptidyl-tRNA hydrolase 2, mitochondrial, transit peptide removed form (human) +is_a: PR:Q9Y3E5 ! peptidyl-tRNA hydrolase 2, mitochondrial (human) intersection_of: PR:Q9Y3E5 ! peptidyl-tRNA hydrolase 2, mitochondrial (human) intersection_of: has_part MOD:01148 ! ubiquitinylated lysine intersection_of: lacks_part SO:0000725 ! transit_peptide @@ -111366,15 +111772,15 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000049069 name: 60S ribosomal protein L11, initiator methionine removed form (human) namespace: protein -def: "A 60S ribosomal protein L11 (human) that has had the initiator methionine removed. UniProtKB:P62913, 2-178." [PRO:DNx, Reactome:R-HSA-72406] +def: "A large ribosomal subunit protein uL5 (human) that has had the initiator methionine removed. UniProtKB:P62913, 2-178." [PRO:DNx, Reactome:R-HSA-72406] comment: Category=organism-modification. synonym: "hRPL11/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000125082" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P62913, 2-178" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-72406 "PR:000049069 located_in GO:0005829" -is_a: PR:000021287 ! 60S ribosomal protein L11, initiator methionine removed form -is_a: PR:P62913 ! 60S ribosomal protein L11 (human) -intersection_of: PR:P62913 ! 60S ribosomal protein L11 (human) +is_a: PR:000021287 ! eukaryotic-type large ribosomal subunit protein uL5, initiator methionine removed form +is_a: PR:P62913 ! large ribosomal subunit protein uL5 (human) +intersection_of: PR:P62913 ! large ribosomal subunit protein uL5 (human) intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -111383,33 +111789,33 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000049089 name: 60S ribosomal protein L38, initiator methionine removed form (human) namespace: protein -def: "A 60S ribosomal protein L38 (human) that has had the initiator methionine removed. UniProtKB:P63173, 2-70." [PRO:DNx, Reactome:R-HSA-72470] +def: "A large ribosomal subunit protein eL38 (human) that has had the initiator methionine removed. UniProtKB:P63173, 2-70." [PRO:DNx, Reactome:R-HSA-72470] comment: Category=organism-modification. synonym: "hRPL38/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000215434" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P63173, 2-70" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-72470 "PR:000049089 located_in GO:0005829" xref: TDR:1046 -is_a: PR:P63173 ! 60S ribosomal protein L38 (human) -intersection_of: PR:P63173 ! 60S ribosomal protein L38 (human) +is_a: PR:P63173 ! large ribosomal subunit protein eL38 (human) +intersection_of: PR:P63173 ! large ribosomal subunit protein eL38 (human) intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:000049092 -name: 60S ribosomal protein L5, initiator methionine removed form (human) +name: large ribosomal subunit protein uL18, initiator methionine removed form (human) namespace: protein -def: "A 60S ribosomal protein L5 (human) that has had the initiator methionine removed. UniProtKB:P46777, 2-297." [PRO:DNx, Reactome:R-HSA-72482] +def: "A large ribosomal subunit protein uL18 (human) that has had the initiator methionine removed. UniProtKB:P46777, 2-297." [PRO:DNx, Reactome:R-HSA-72482] comment: Category=organism-modification. synonym: "hRPL5/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000131431" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P46777, 2-297" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-72482 "PR:000049092 located_in GO:0005829" xref: TDR:6985 -is_a: PR:000021305 ! 60S ribosomal protein L5, initiator methionine removed form -is_a: PR:P46777 ! 60S ribosomal protein L5 (human) -intersection_of: PR:P46777 ! 60S ribosomal protein L5 (human) +is_a: PR:000021305 ! eukaryotic-type large ribosomal subunit protein uL18, initiator methionine removed form +is_a: PR:P46777 ! large ribosomal subunit protein uL18 (human) +intersection_of: PR:P46777 ! large ribosomal subunit protein uL18 (human) intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -111485,7 +111891,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000049106 name: 40S ribosomal protein S12, initiator methionine removed form (human) namespace: protein -def: "A 40S ribosomal protein S12 (human) that has had the initiator methionine removed. UniProtKB:P25398, 2-132." [PRO:DNx, Reactome:R-HSA-6798715, Reactome:R-HSA-72329] +def: "A small ribosomal subunit protein eS12 (human) that has had the initiator methionine removed. UniProtKB:P25398, 2-132." [PRO:DNx, Reactome:R-HSA-6798715, Reactome:R-HSA-72329] comment: Category=organism-modification. synonym: "hRPS12/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000122323" EXACT PRO-proteoform-ftid [PRO:DNx] @@ -111493,9 +111899,9 @@ synonym: "UniProtKB:P25398, 2-132" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-6798715 "PR:000049106 located_in GO:0005654" xref: Reactome:R-HSA-72329 "PR:000049106 located_in GO:0005829" xref: TDR:2194 -is_a: PR:000021316 ! 40S ribosomal protein S12, initiator methionine removed form -is_a: PR:P25398 ! 40S ribosomal protein S12 (human) -intersection_of: PR:P25398 ! 40S ribosomal protein S12 (human) +is_a: PR:000021316 ! small ribosomal subunit protein eS12, initiator methionine removed form +is_a: PR:P25398 ! small ribosomal subunit protein eS12 (human) +intersection_of: PR:P25398 ! small ribosomal subunit protein eS12 (human) intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -111504,7 +111910,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000049108 name: 40S ribosomal protein S14, initiator methionine removed form (human) namespace: protein -def: "A 40S ribosomal protein S14 (human) that has had the initiator methionine removed. UniProtKB:P62263, 2-151." [PRO:DNx, Reactome:R-HSA-6790669, Reactome:R-HSA-72333] +def: "A small ribosomal subunit protein uS11 (human) that has had the initiator methionine removed. UniProtKB:P62263, 2-151." [PRO:DNx, Reactome:R-HSA-6790669, Reactome:R-HSA-72333] comment: Category=organism-modification. synonym: "hRPS14/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000123337" EXACT PRO-proteoform-ftid [PRO:DNx] @@ -111512,9 +111918,9 @@ synonym: "UniProtKB:P62263, 2-151" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-6790669 "PR:000049108 located_in GO:0005654" xref: Reactome:R-HSA-72333 "PR:000049108 located_in GO:0005829" xref: TDR:1391 -is_a: PR:000021317 ! 40S ribosomal protein S14, initiator methionine removed form -is_a: PR:P62263 ! 40S ribosomal protein S14 (human) -intersection_of: PR:P62263 ! 40S ribosomal protein S14 (human) +is_a: PR:000021317 ! eukaryotic-type small ribosomal subunit protein uS11, initiator methionine removed form +is_a: PR:P62263 ! small ribosomal subunit protein uS11 (human) +intersection_of: PR:P62263 ! small ribosomal subunit protein uS11 (human) intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -111523,7 +111929,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000049113 name: 40S ribosomal protein S19, initiator methionine removed form (human) namespace: protein -def: "A 40S ribosomal protein S19 (human) that has had the initiator methionine removed. UniProtKB:P39019, 2-145." [PRO:DNx, Reactome:R-HSA-6798710, Reactome:R-HSA-72343] +def: "A small ribosomal subunit protein eS19 (human) that has had the initiator methionine removed. UniProtKB:P39019, 2-145." [PRO:DNx, Reactome:R-HSA-6798710, Reactome:R-HSA-72343] comment: Category=organism-modification. synonym: "hRPS19/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000153810" EXACT PRO-proteoform-ftid [PRO:DNx] @@ -111531,9 +111937,9 @@ synonym: "UniProtKB:P39019, 2-145" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-6798710 "PR:000049113 located_in GO:0005654" xref: Reactome:R-HSA-72343 "PR:000049113 located_in GO:0005829" xref: TDR:2119 -is_a: PR:000021323 ! 40S ribosomal protein S19, initiator methionine removed form -is_a: PR:P39019 ! 40S ribosomal protein S19 (human) -intersection_of: PR:P39019 ! 40S ribosomal protein S19 (human) +is_a: PR:000021323 ! small ribosomal subunit protein eS19, initiator methionine removed form +is_a: PR:P39019 ! small ribosomal subunit protein eS19 (human) +intersection_of: PR:P39019 ! small ribosomal subunit protein eS19 (human) intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -111542,16 +111948,16 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000049114 name: 40S ribosomal protein S20, initiator methionine removed form (human) namespace: protein -def: "A 40S ribosomal protein S20 (human) that has had the initiator methionine removed. UniProtKB:P60866, 2-119." [PRO:DNx, Reactome:R-HSA-6798727, Reactome:R-HSA-72349] +def: "A small ribosomal subunit protein uS10 (human) that has had the initiator methionine removed. UniProtKB:P60866, 2-119." [PRO:DNx, Reactome:R-HSA-6798727, Reactome:R-HSA-72349] comment: Category=organism-modification. synonym: "hRPS20/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000146683" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P60866, 2-119" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-6798727 "PR:000049114 located_in GO:0005654" xref: Reactome:R-HSA-72349 "PR:000049114 located_in GO:0005829" -is_a: PR:000021325 ! 40S ribosomal protein S20, initiator methionine removed form -is_a: PR:P60866 ! 40S ribosomal protein S20 (human) -intersection_of: PR:P60866 ! 40S ribosomal protein S20 (human) +is_a: PR:000021325 ! eukaryotic-type small ribosomal subunit protein uS10, initiator methionine removed form +is_a: PR:P60866 ! small ribosomal subunit protein uS10 (human) +intersection_of: PR:P60866 ! small ribosomal subunit protein uS10 (human) intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -111560,7 +111966,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000049120 name: 40S ribosomal protein S4, X isoform, initiator methionine removed form (human) namespace: protein -def: "A 40S ribosomal protein S4, X isoform (human) that has had the initiator methionine removed. UniProtKB:P62701, 2-263." [PRO:DNx, Reactome:R-HSA-6798713, Reactome:R-HSA-72375] +def: "A small ribosomal subunit protein eS4, X isoform (human) that has had the initiator methionine removed. UniProtKB:P62701, 2-263." [PRO:DNx, Reactome:R-HSA-6798713, Reactome:R-HSA-72375] comment: Category=organism-modification. synonym: "hRPS4X/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000130805" EXACT PRO-proteoform-ftid [PRO:DNx] @@ -111568,9 +111974,9 @@ synonym: "UniProtKB:P62701, 2-263" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-6798713 "PR:000049120 located_in GO:0005654" xref: Reactome:R-HSA-72375 "PR:000049120 located_in GO:0005829" xref: TDR:1461 -is_a: PR:000021332 ! 40S ribosomal protein S4, X isoform, initiator methionine removed form -is_a: PR:P62701 ! 40S ribosomal protein S4, X isoform (human) -intersection_of: PR:P62701 ! 40S ribosomal protein S4, X isoform (human) +is_a: PR:000021332 ! small ribosomal subunit protein eS4, X isoform, initiator methionine removed form +is_a: PR:P62701 ! small ribosomal subunit protein eS4, X isoform (human) +intersection_of: PR:P62701 ! small ribosomal subunit protein eS4, X isoform (human) intersection_of: lacks_part PR:000021937 ! initiator methionine relationship: lacks_part PR:000021937 ! initiator methionine relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -111595,11 +112001,11 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000049147 name: tyrosine-protein kinase RYK, signal peptide removed form (human) namespace: protein -def: "A tyrosine-protein kinase RYK (human) that has had the signal peptide removed. UniProtKB:P34925, 26-604." [PRO:DNx, Reactome:R-HSA-3006746] +def: "A tyrosine-protein kinase RYK (human) that has had the signal peptide removed. UniProtKB:P34925, 26-607." [PRO:DNx, Reactome:R-HSA-3006746] comment: Category=organism-modification. synonym: "hRYK/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000024464" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:P34925, 26-604" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:P34925, 26-607" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-3006746 "PR:000049147 located_in GO:0005886" is_a: PR:P34925 ! tyrosine-protein kinase RYK (human) intersection_of: PR:P34925 ! tyrosine-protein kinase RYK (human) @@ -112158,6 +112564,7 @@ synonym: "hSHMT2/TransPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000032562" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P34897, 30-504" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-5694086 "PR:000049237 located_in GO:0005743" +xref: Reactome:R-HSA-9714752 "PR:000049237 located_in GO:0005829" is_a: PR:000021472 ! serine hydroxymethyltransferase, mitochondrial, transit peptide removed form is_a: PR:P34897 ! serine hydroxymethyltransferase, mitochondrial (human) intersection_of: PR:P34897 ! serine hydroxymethyltransferase, mitochondrial (human) @@ -112539,11 +112946,11 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000049300 name: sphingomyelin phosphodiesterase, signal peptide removed form (human) namespace: protein -def: "A sphingomyelin phosphodiesterase (human) that has had the signal peptide removed. UniProtKB:P17405, 47-629." [PRO:DNx, Reactome:R-HSA-1605710] +def: "A sphingomyelin phosphodiesterase (human) that has had the signal peptide removed. UniProtKB:P17405, 47-631." [PRO:DNx, Reactome:R-HSA-1605710] comment: Category=organism-modification. synonym: "hSMPD1/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000002323" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:P17405, 47-629" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:P17405, 47-631" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-1605710 "PR:000049300 located_in GO:0043202" is_a: PR:000021511 ! sphingomyelin phosphodiesterase, signal peptide removed form is_a: PR:P17405 ! sphingomyelin phosphodiesterase (human) @@ -112957,11 +113364,11 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000049353 name: SCO-spondin, signal peptide removed form (human) namespace: protein -def: "A SCO-spondin (human) that has had the signal peptide removed. UniProtKB:A2VEC9, 18-5147." [PRO:DNx, Reactome:R-HSA-5173055] +def: "A SCO-spondin (human) that has had the signal peptide removed. UniProtKB:A2VEC9, 18-5150." [PRO:DNx, Reactome:R-HSA-5173055] comment: Category=organism-modification. synonym: "hSSPO/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_5000223757" EXACT PRO-proteoform-ftid [PRO:DNx] -synonym: "UniProtKB:A2VEC9, 18-5147" EXACT PRO-proteoform-std [PRO:DNx] +synonym: "UniProtKB:A2VEC9, 18-5150" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-5173055 "PR:000049353 located_in GO:0005788" is_a: PR:A2VEC9 ! SCO-spondin (human) intersection_of: PR:A2VEC9 ! SCO-spondin (human) @@ -113234,6 +113641,7 @@ xref: Reactome:R-HSA-2980925 "PR:000049410 located_in GO:0005576" xref: Reactome:R-HSA-3000100 "PR:000049410 located_in GO:0005768" xref: Reactome:R-HSA-3000262 "PR:000049410 located_in GO:0043202" xref: Reactome:R-HSA-3315449 "PR:000049410 located_in GO:0005576" +xref: Reactome:R-HSA-9758895 "PR:000049410 located_in GO:0005886" is_a: PR:000021634 ! transcobalamin-2, signal peptide removed form is_a: PR:P20062 ! transcobalamin-2 (human) intersection_of: PR:P20062 ! transcobalamin-2 (human) @@ -114033,6 +114441,7 @@ synonym: "hTRA2B/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000081983" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P62995, 2-288" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-8850859 "PR:000049533 located_in GO:0005654" +xref: Reactome:R-HSA-9715137 "PR:000049533 located_in GO:0005829" is_a: PR:P62995 ! transformer-2 protein homolog beta (human) intersection_of: PR:P62995 ! transformer-2 protein homolog beta (human) intersection_of: lacks_part PR:000021937 ! initiator methionine @@ -114438,6 +114847,7 @@ synonym: "hUGT2A1/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000036023" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P0DTE4, 21-527" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-174930 "PR:000049604 located_in GO:0005789" +xref: Reactome:R-HSA-9698803 "PR:000049604 located_in GO:0005789" is_a: PR:P0DTE4 ! UDP-glucuronosyltransferase 2A1 (human) intersection_of: PR:P0DTE4 ! UDP-glucuronosyltransferase 2A1 (human) intersection_of: lacks_part SO:0000418 ! signal_peptide @@ -114657,6 +115067,7 @@ synonym: "hVAPB/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000213473" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:O95292, 2-243" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-429718 "PR:000049639 located_in GO:0005789" +xref: Reactome:R-HSA-9715115 "PR:000049639 located_in GO:0000139" is_a: PR:000029850 ! vesicle-associated membrane protein-associated protein B/C, initiator methionine removed form is_a: PR:O95292 ! vesicle-associated membrane protein-associated protein B/C (human) intersection_of: PR:O95292 ! vesicle-associated membrane protein-associated protein B/C (human) @@ -114765,16 +115176,16 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:000049655 name: vascular endothelial growth factor A, signal peptide removed form (human) namespace: protein -def: "A vascular endothelial growth factor A (human) that has had the signal peptide removed. UniProtKB:P15692, 27-232." [PRO:DNx, Reactome:R-HSA-2975974, Reactome:R-HSA-3132764] +def: "A vascular endothelial growth factor A, long form (human) that has had the signal peptide removed. UniProtKB:P15692, 27-232." [PRO:DNx, Reactome:R-HSA-2975974, Reactome:R-HSA-3132764] comment: Category=organism-modification. synonym: "hVEGFA/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000023386" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P15692, 27-232" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-2975974 "PR:000049655 located_in GO:0005576" xref: Reactome:R-HSA-3132764 "PR:000049655 located_in GO:0031093" -is_a: PR:000021820 ! vascular endothelial growth factor A, signal peptide removed form -is_a: PR:P15692 ! vascular endothelial growth factor A (human) -intersection_of: PR:P15692 ! vascular endothelial growth factor A (human) +is_a: PR:000021820 ! vascular endothelial growth factor A, long form, signal peptide removed form +is_a: PR:P15692 ! vascular endothelial growth factor A, long form (human) +intersection_of: PR:P15692 ! vascular endothelial growth factor A, long form (human) intersection_of: lacks_part SO:0000418 ! signal_peptide relationship: lacks_part SO:0000418 ! signal_peptide relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -115077,6 +115488,7 @@ synonym: "PRO_0000100219" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P67809, 2-324" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-72041 "PR:000049718 located_in GO:0005654" xref: Reactome:R-HSA-9017791 "PR:000049718 located_in GO:0005576" +xref: Reactome:R-HSA-9736840 "PR:000049718 located_in GO:0005829" is_a: PR:000021866 ! Y-box-binding protein 1, initiator methionine removed form is_a: PR:P67809 ! Y-box-binding protein 1 (human) intersection_of: PR:P67809 ! Y-box-binding protein 1 (human) @@ -115116,6 +115528,16 @@ intersection_of: PR:000019753 ! epidermal growth factor receptor, signal peptide intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: PR:000049912 +name: amino-acid residue related to L-asparagine +namespace: protein +def: "An amino-acid residue that is either a modified or unmodified L-asparagine residue." [PRO:DAN] +comment: Category=external. +is_a: CHEBI:33708 ! amino-acid residue +union_of: CHEBI:50347 ! L-asparagine residue +union_of: MOD:00903 ! modified L-asparagine residue + [Term] id: PR:000049983 name: ion channel protein @@ -115126,8 +115548,8 @@ synonym: "fam:ion_chan" EXACT PRO-short-label [PRO:DAN] xref: IUPHARfam:689 is_a: PR:000044676 ! channel protein intersection_of: PR:000044676 ! channel protein -intersection_of: capable_of GO:0005216 ! ion channel activity -relationship: capable_of GO:0005216 ! ion channel activity +intersection_of: capable_of GO:0005216 ! monoatomic ion channel activity +relationship: capable_of GO:0005216 ! monoatomic ion channel activity [Term] id: PR:000049984 @@ -115433,6 +115855,7 @@ def: "A tryptase alpha/beta-1 (human) that has had the signal peptide and propep comment: Category=organism-modification. synonym: "hTPSAB1/mature" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000027480" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:Q15661, 31-275" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:Q15661-1, 31-275" NARROW PRO-proteoform-std [PRO:DNx] is_a: PR:000028941 ! activated trypsin is_a: PR:Q15661 ! tryptase alpha/beta-1 (human) @@ -115451,6 +115874,7 @@ def: "A small ubiquitin-related modifier 1 (human) that has had the initiator me comment: Category=organism-modification. synonym: "hSUMO1/mature" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000035939" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P63165, 2-97" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P63165-1, 2-97" NARROW PRO-proteoform-std [PRO:DNx] is_a: PR:000049385 ! small ubiquitin-related modifier 1, initiator methionine removed form (human) is_a: PR:000060213 ! small ubiquitin-related modifier 1, mature form @@ -115469,6 +115893,7 @@ def: "A small ubiquitin-related modifier 2 (human) that has had the propeptide r comment: Category=organism-modification. synonym: "hSUMO2/mature" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000035949" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P61956, 1-93" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P61956-1, 1-93" NARROW PRO-proteoform-std [PRO:DNx] is_a: PR:000060214 ! small ubiquitin-related modifier 2, mature form is_a: PR:P61956 ! small ubiquitin-related modifier 2 (human) @@ -115485,6 +115910,7 @@ def: "A small ubiquitin-related modifier 3 (human) that has had the propeptide r comment: Category=organism-modification. synonym: "hSUMO3/mature" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000035957" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P55854, 1-92" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P55854-1, 1-92" NARROW PRO-proteoform-std [PRO:DNx] is_a: PR:000060215 ! small ubiquitin-related modifier 3, mature form is_a: PR:P55854 ! small ubiquitin-related modifier 3 (human) @@ -115516,6 +115942,7 @@ def: "A prostatic acid phosphatase, signal peptide removed form in human. Exampl comment: Category=organism-modification. synonym: "hACPP/SigPep-" EXACT PRO-short-label [PRO:DNx] synonym: "PRO_0000023963" NARROW PRO-proteoform-ftid [PRO:DNx] +synonym: "UniProtKB:P15309, 33-386" EXACT PRO-proteoform-std [PRO:DNx] synonym: "UniProtKB:P15309-1, 33-386" NARROW PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-3229238 "PR:000050082 located_in GO:0005886" xref: Reactome:R-HSA-6799214 "PR:000050082 located_in GO:0035577" @@ -115588,7 +116015,7 @@ is_a: PR:000000001 ! protein id: PR:000050159 name: IgA1 immunoglobulin complex, circulating (human) namespace: protein -def: "An IgA immunoglobulin complex, circulating that in monomeric form is composed of two identical immunoglobulin heavy chains of the secretory isoform of the IgA1 isotype and two identical immunoglobulin light chains (kappa or lambda), held together by disulfide bonds, sometimes complexed with J chain or J chain and secretory component, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph." [GOC:add, ISBN:0781765196, PMID:16362985, PRO:ADD] +def: "An IgA immunoglobulin complex, circulating in human that is composed of (in monomeric form) two identical immunoglobulin heavy chains of the secretory isoform of the IgA1 isotype and two identical immunoglobulin light chains (kappa or lambda), held together by disulfide bonds, sometimes complexed with J chain or J chain and secretory component, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph." [GOC:add, ISBN:0781765196, PMID:16362985, PRO:ADD] comment: Category=organism-complex. Requested by=HIPC. Requested by=CL. synonym: "hIgA1/circulating" EXACT PRO-short-label [PRO:DAN] synonym: "IgA antibody (human)" BROAD [GOC:add, PRO:ADD] @@ -116372,15 +116799,16 @@ is_a: PR:000020114 ! hemoglobin subunit beta, initiator methionine removed form id: PR:000050469 name: hemoglobin A1c namespace: protein -def: "A hemoglobin complex that is composed of at least one beta-N-1-deoxy fructosyl hemoglobin subunit, in which the glycan is attached to the N-terminal valine (after initiator methionine removal) of one or both beta subunits." [PMID:9732983, PRO:DAN, Wikipedia:Glycated_hemoglobin] +def: "A hemoglobin complex that is composed of at least one beta-N-1-deoxy fructosyl hemoglobin subunit, in which the glycan is attached to the N-terminal valine (after initiator methionine removal) of one or both beta subunits." [PMID:16112961, PMID:9732983, PRO:DAN, Wikipedia:Glycated_hemoglobin] comment: Category=complex. Note: The precise definition of hemoglobin A1c has evolved over time [https://medcraveonline.com/JNMR/laboratory-diagnosis-of-hba1c-a-review.html]. This PRO term is based on the most-precise definition currently in use. synonym: "glycated hemoglobin" BROAD [PMID:9732983] synonym: "glycohemoglobin" BROAD [PMID:9732983] synonym: "HbA1c" EXACT PRO-short-label [PRO:DAN] synonym: "HgbA1c" EXACT [PMID:9732983] is_a: GO:0005833 ! hemoglobin complex -relationship: has_component PR:000008456 {cardinality="2"} ! hemoglobin subunit alpha -relationship: has_component PR:000050026 {maxCardinality="1"} ! hemoglobin subunit beta +relationship: has_component CHEBI:30413 {cardinality="4"} ! heme +relationship: has_component PR:000020113 {cardinality="2"} ! hemoglobin subunit alpha, initiator methionine removed form +relationship: has_component PR:000020114 {cardinality="2"} ! hemoglobin subunit beta, initiator methionine removed form relationship: has_component PR:000050468 {minCardinality="1"} ! hemoglobin subunit beta N-1-deoxyfructosylated 1 relationship: has_component PR:000050468 {maxCardinality="2"} ! hemoglobin subunit beta N-1-deoxyfructosylated 1 @@ -116403,21 +116831,6 @@ union_of: PR:P0DN77 ! medium-wave-sensitive opsin 2 (human) union_of: PR:P0DN78 ! medium-wave-sensitive opsin 3 (human) relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens -[Term] -id: PR:000050567 -name: protein-containing material entity -namespace: protein -def: "A material entity that minimally consists of a protein." [PRO:DAN] -comment: Note: This includes single proteins and derivatives thereof (PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050566). -synonym: "protein" NARROW [PRO:DAN] -synonym: "protein aggregate" NARROW [PRO:DAN] -synonym: "protein complex" NARROW [PRO:DAN] -synonym: "protein-containing complex" NARROW [PRO:DAN] -is_a: BFO:0000040 ! material entity -intersection_of: BFO:0000040 ! material entity -intersection_of: has_part PR:000000001 ! protein -relationship: has_part PR:000000001 ! protein - [Term] id: PR:000050571 name: spermatogenesis-associated protein 33 @@ -116477,7 +116890,6 @@ namespace: protein def: "A small ubiquitin-related modifier that has had the initiator methionine and propeptide removed. Example: UniProtKB:P63165-1, 2-97." [PRO:DAN] comment: Category=modification. synonym: "SUMO/mature" EXACT PRO-short-label [PRO:DNx] -synonym: "UniProtKB:P63165-1, 2-97" NARROW PRO-proteoform-std [PRO:DNx] is_a: PR:000059638 ! small ubiquitin-related modifier intersection_of: PR:000059638 ! small ubiquitin-related modifier intersection_of: lacks_part PR:000021937 ! initiator methionine @@ -116572,7 +116984,7 @@ synonym: "mRPS27A/Clv:ubiq" EXACT PRO-short-label [PRO:DAN] synonym: "PRO_0000396479" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "UniProtKB:P62983, 1-76" EXACT PRO-proteoform-std [PRO:DNx] is_a: PR:000035716 ! ubiquitin (RPS27A) -is_a: PR:P62983 ! ubiquitin-40S ribosomal protein S27a (mouse) +is_a: PR:P62983 ! ubiquitin-ribosomal protein eS31 fusion protein (mouse) intersection_of: PR:000035716 ! ubiquitin (RPS27A) intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -116603,12 +117015,14 @@ union_of: PR:000060215 ! small ubiquitin-related modifier 3, mature form [Term] id: PR:000059732 -name: protein Frey +name: protein Frey 1 namespace: protein -def: "A protein that is a translation product of the human C11orf94 gene or a 1:1 ortholog thereof." [PRO:DNx] +def: "A protein that is a translation product of the human FREY1 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. -synonym: "C11orf94" EXACT PRO-short-label [PRO:DNx] +synonym: "C11orf94" RELATED Gene-based [] synonym: "FREY" RELATED Gene-based [] +synonym: "Frey regulator of sperm-oocyte fusion 1" EXACT [] +synonym: "FREY1" EXACT PRO-short-label [PRO:DNx] synonym: "protein C11orf94" EXACT [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:C9JXX5 @@ -116694,12 +117108,13 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q147U7 [Term] id: PR:000059782 -name: HUWE1-associated protein modifying stress responses +name: HUWE1-associated protein modifying stress responses 1 namespace: protein def: "A protein that is a translation product of the human C16orf72 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "C16orf72" RELATED Gene-based [] synonym: "HAPSTR1" EXACT PRO-short-label [PRO:DNx] +synonym: "HUWE1-associated protein modifying stress responses" EXACT [] synonym: "TAPR1" RELATED Gene-based [] synonym: "telomere attrition and p53 response 1 protein" EXACT [] is_a: PR:000000001 ! protein @@ -116717,11 +117132,14 @@ property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q2NKX9 [Term] id: PR:000059810 -name: UPF0692 protein C19orf54 +name: actin maturation protease namespace: protein -def: "A protein that is a translation product of the human C19orf54 gene or a 1:1 ortholog thereof." [PRO:DNx] +def: "A protein that is a translation product of the human ACTMAP gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. -synonym: "C19orf54" EXACT PRO-short-label [PRO:DNx] +synonym: "actin aminopeptidase ACTMAP" EXACT [] +synonym: "ACTMAP" EXACT PRO-short-label [PRO:DNx] +synonym: "C19orf54" RELATED Gene-based [] +synonym: "UPF0692 protein C19orf54" EXACT [] is_a: PR:000000001 ! protein property_value: https://w3id.org/semapv/vocab/crossSpeciesExactMatch PR:Q5BKX5 @@ -117456,7 +117874,6 @@ namespace: protein def: "A small ubiquitin-related modifier 1 that has had the initiator methionine and propeptide removed. Example: UniProtKB:P63165-1, 2-97." [PRO:DAN] comment: Category=modification. Requested by=Reactome. synonym: "SUMO1/mature" EXACT PRO-short-label [PRO:DNx] -synonym: "UniProtKB:P63165-1, 2-97" NARROW PRO-proteoform-std [PRO:DNx] is_a: PR:000015829 ! small ubiquitin-related modifier 1 intersection_of: PR:000015829 ! small ubiquitin-related modifier 1 intersection_of: lacks_part PR:000021937 ! initiator methionine @@ -117471,7 +117888,6 @@ namespace: protein def: "A small ubiquitin-related modifier 2 that has had the propeptide removed. Example: UniProtKB:P61956-1, 1-93." [PRO:DAN] comment: Category=modification. Requested by=Reactome. synonym: "SUMO2/mature" EXACT PRO-short-label [PRO:DNx] -synonym: "UniProtKB:P61956-1, 1-93" NARROW PRO-proteoform-std [PRO:DNx] is_a: PR:000015830 ! small ubiquitin-related modifier 2 intersection_of: PR:000015830 ! small ubiquitin-related modifier 2 intersection_of: lacks_part SO:0001062 ! propeptide @@ -117484,7 +117900,6 @@ namespace: protein def: "A small ubiquitin-related modifier 3 that has had the propeptide removed. Example: UniProtKB:P55854-1, 1-92." [PRO:DAN] comment: Category=modification. Requested by=Reactome. synonym: "SUMO3/mature" EXACT PRO-short-label [PRO:DNx] -synonym: "UniProtKB:P55854-1, 1-92" NARROW PRO-proteoform-std [PRO:DNx] is_a: PR:000015831 ! small ubiquitin-related modifier 3 intersection_of: PR:000015831 ! small ubiquitin-related modifier 3 intersection_of: lacks_part SO:0001062 ! propeptide @@ -117500,7 +117915,7 @@ synonym: "mUBA52/Clv:ubiq" EXACT PRO-short-label [PRO:DAN] synonym: "PRO_0000396435" EXACT PRO-proteoform-ftid [PRO:DAN] synonym: "UniProtKB:P62984, 1-76" EXACT PRO-proteoform-std [PRO:DAN] is_a: PR:000035722 ! ubiquitin (UBA52) -is_a: PR:P62984 ! ubiquitin-60S ribosomal protein L40 (mouse) +is_a: PR:P62984 ! ubiquitin-ribosomal protein eL40 fusion protein (mouse) intersection_of: PR:000035722 ! ubiquitin (UBA52) intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -117695,10 +118110,25 @@ def: "A ubiquitin (human) that is a monomer." [PRO:DAN] comment: Category=organism-polymer. Requested by=Reactome. synonym: "hmonoUbiq" EXACT PRO-short-label [PRO:DAN] intersection_of: PR:000050249 ! ubiquitin (human) -intersection_of: has_constituent_monomer PR:000035728 {cardinality="1"} ! ubiquitin -relationship: has_constituent_monomer PR:000035728 {cardinality="1"} ! ubiquitin +intersection_of: has_constituent_monomer PR:000050249 {cardinality="1"} ! ubiquitin (human) +relationship: has_constituent_monomer PR:000050249 {cardinality="1"} ! ubiquitin (human) relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: PR:000064867 +name: protein-containing molecular entity +namespace: protein +def: "A molecular entity that minimally consists of a protein." [PRO:DAN] +comment: Note: This includes single proteins and derivatives thereof (PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050565). +synonym: "protein" NARROW [PRO:DAN] +synonym: "protein aggregate" NARROW [PRO:DAN] +synonym: "protein complex" NARROW [PRO:DAN] +synonym: "protein-containing complex" NARROW [PRO:DAN] +is_a: CHEBI:23367 ! molecular entity +intersection_of: CHEBI:23367 ! molecular entity +intersection_of: has_part PR:000000001 ! protein +relationship: has_part PR:000000001 ! protein + [Term] id: PR:A0A1D5NZX9 name: lymphocyte antigen 96 (chicken) @@ -117779,6 +118209,8 @@ namespace: protein def: "A prestin that is encoded in the genome of chicken." [OMA:A0FKN5, PRO:DAN] comment: Category=organism-gene. synonym: "chick-SLC26A5" EXACT PRO-short-label [PRO:DNx] +synonym: "SLC26A5" RELATED Gene-based [UniProtKB:A0FKN5] +synonym: "solute carrier family 26 member 5 (chicken)" EXACT [UniProtKB:A0FKN5] xref: UniProtKB:A0FKN5 is_a: PR:000015040 ! prestin is_a: PR:000029063 ! Gallus gallus protein @@ -117883,7 +118315,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:A1E345 name: junctional adhesion protein A (chicken) namespace: protein -def: "A junctional adhesion molecule A that is encoded in the genome of chicken." [PANTHER:PTHR12231\:SF4, PRO:DNx] +def: "A junctional adhesion molecule A that is encoded in the genome of chicken." [OMA:A1E345, PRO:DNx] comment: Category=organism-gene. synonym: "chick-F11R" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:A1E345 @@ -117926,20 +118358,22 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] id: PR:A1KXC4 -name: Fas apoptotic inhibitory molecule 3 (mouse) +name: immunoglobulin mu Fc receptor (mouse) namespace: protein -def: "A Fas apoptotic inhibitory molecule 3 that is encoded in the genome of mouse." [OMA:A1KXC4, PRO:DNx] +def: "An immunoglobulin mu Fc receptor that is encoded in the genome of mouse." [OMA:A1KXC4, PRO:DNx] comment: Category=organism-gene. synonym: "Faim3" RELATED Gene-based [UniProtKB:A1KXC4] +synonym: "FAIM3 (mouse)" EXACT [UniProtKB:A1KXC4] +synonym: "Fas apoptotic inhibitory molecule 3 (mouse)" EXACT [UniProtKB:A1KXC4] synonym: "Fcmr" RELATED Gene-based [UniProtKB:A1KXC4] -synonym: "IgM Fc fragment receptor (mouse)" EXACT [UniProtKB:A1KXC4] +synonym: "IgM FcR (mouse)" EXACT [UniProtKB:A1KXC4] synonym: "mFCMR" EXACT PRO-short-label [PRO:DNx] synonym: "regulator of Fas-induced apoptosis Toso (mouse)" EXACT [UniProtKB:A1KXC4] synonym: "Toso" RELATED Gene-based [UniProtKB:A1KXC4] xref: UniProtKB:A1KXC4 -is_a: PR:000007329 ! Fas apoptotic inhibitory molecule 3 +is_a: PR:000007329 ! immunoglobulin mu Fc receptor is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000007329 ! Fas apoptotic inhibitory molecule 3 +intersection_of: PR:000007329 ! immunoglobulin mu Fc receptor intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1916419 ! Fcmr (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -118385,7 +118819,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:A2AJ15 name: endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase (mouse) namespace: protein -def: "An endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase that is encoded in the genome of mouse." [OMA:A2AJ15, PANTHER:PTHR11742\:SF7, PRO:DNx] +def: "An endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase that is encoded in the genome of mouse." [OMA:A2AJ15, PRO:DNx] comment: Category=organism-gene. synonym: "ER alpha-1,2-mannosidase (mouse)" EXACT [UniProtKB:A2AJ15] synonym: "ER mannosidase 1 (mouse)" EXACT [UniProtKB:A2AJ15] @@ -118652,7 +119086,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:A2ATD1 name: isthmin-1 (mouse) namespace: protein -def: "An isthmin-1 that is encoded in the genome of mouse." [OMA:A2ATD1, PANTHER:PTHR11036\:SF47, PRO:DNx] +def: "An isthmin-1 that is encoded in the genome of mouse." [OMA:A2ATD1, PRO:DNx] comment: Category=organism-gene. synonym: "Ism" RELATED Gene-based [UniProtKB:A2ATD1] synonym: "Ism1" RELATED Gene-based [UniProtKB:A2ATD1] @@ -118669,7 +119103,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:A2AUC9 name: kelch-like protein 41 (mouse) namespace: protein -def: "A kelch-like protein 41 that is encoded in the genome of mouse." [OMA:A2AUC9, PANTHER:PTHR24413\:SF107, PRO:DNx] +def: "A kelch-like protein 41 that is encoded in the genome of mouse." [OMA:A2AUC9, PRO:DNx] comment: Category=organism-gene. synonym: "Kbtbd10" RELATED Gene-based [UniProtKB:A2AUC9] synonym: "kelch repeat and BTB domain-containing protein 10 (mouse)" EXACT [UniProtKB:A2AUC9] @@ -118757,7 +119191,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:A2BH40 name: AT-rich interactive domain-containing protein 1A (mouse) namespace: protein -def: "An AT-rich interactive domain-containing protein 1A that is encoded in the genome of mouse." [OMA:A2BH40, PANTHER:PTHR12656\:SF4, PRO:DNx] +def: "An AT-rich interactive domain-containing protein 1A that is encoded in the genome of mouse." [OMA:A2BH40, PRO:DNx] comment: Category=organism-gene. synonym: "ARID domain-containing protein 1A (mouse)" EXACT [UniProtKB:A2BH40] synonym: "Arid1a" RELATED Gene-based [UniProtKB:A2BH40] @@ -119214,7 +119648,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:A6N7Y9 name: piwi-like protein 1 (chicken) namespace: protein -def: "A piwi-like protein 1 that is encoded in the genome of chicken." [OMA:A6N7Y9, PANTHER:PTHR22892\:SF12, PRO:DNx] +def: "A piwi-like protein 1 that is encoded in the genome of chicken." [OMA:A6N7Y9, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PIWIL1" EXACT PRO-short-label [PRO:DNx] synonym: "PIWIL1" RELATED Gene-based [UniProtKB:A6N7Y9] @@ -119850,6 +120284,7 @@ synonym: "ectoplasmic specialization protein (human)" EXACT [UniProtKB:B1AK53] synonym: "ESPN" RELATED Gene-based [UniProtKB:B1AK53] synonym: "hESPN" EXACT PRO-short-label [PRO:DNx] synonym: "LP2654" RELATED Gene-based [UniProtKB:B1AK53] +xref: Reactome:R-HSA-9662418 "PR:B1AK53 located_in GO:0005829" xref: UniProtKB:B1AK53 is_a: PR:000007202 ! espin is_a: PR:000029067 ! Homo sapiens protein @@ -119941,7 +120376,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:B1AVY7 name: kinesin-like protein KIF16B (mouse) namespace: protein -def: "A kinesin-like protein KIF16B that is encoded in the genome of mouse." [OMA:B1AVY7, PANTHER:PTHR24115\:SF178, PRO:DNx] +def: "A kinesin-like protein KIF16B that is encoded in the genome of mouse." [OMA:B1AVY7, PRO:DNx] comment: Category=organism-gene. synonym: "Kiaa1590" RELATED Gene-based [UniProtKB:B1AVY7] synonym: "Kif16b" RELATED Gene-based [UniProtKB:B1AVY7] @@ -119958,7 +120393,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:B1AVZ0 name: uracil phosphoribosyltransferase homolog (mouse) namespace: protein -def: "A uracil phosphoribosyltransferase that is encoded in the genome of mouse." [OMA:B1AVZ0, PANTHER:PTHR10285\:SF1, PRO:DNx] +def: "A uracil phosphoribosyltransferase that is encoded in the genome of mouse." [OMA:B1AVZ0, PRO:DNx] comment: Category=organism-gene. synonym: "mUPRT" EXACT PRO-short-label [PRO:DNx] synonym: "Uprt" RELATED Gene-based [UniProtKB:B1AVZ0] @@ -119974,7 +120409,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:B1AWI6 name: prostate-associated microseminoprotein (mouse) namespace: protein -def: "A prostate-associated microseminoprotein that is encoded in the genome of mouse." [OMA:B1AWI6, PANTHER:PTHR10500\:SF0, PRO:DNx] +def: "A prostate-associated microseminoprotein that is encoded in the genome of mouse." [OMA:B1AWI6, PRO:DNx] comment: Category=organism-gene. synonym: "mMSMP" EXACT PRO-short-label [PRO:DNx] synonym: "Msmp" RELATED Gene-based [UniProtKB:B1AWI6] @@ -120096,7 +120531,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:B2RQA1 name: potassium voltage-gated channel subfamily A member 10 (mouse) namespace: protein -def: "A voltage-gated potassium channel subunit KCNA10 that is encoded in the genome of mouse." [OMA:B2RQA1, PANTHER:PTHR11537\:SF44, PRO:DNx] +def: "A voltage-gated potassium channel subunit KCNA10 that is encoded in the genome of mouse." [OMA:B2RQA1, PRO:DNx] comment: Category=organism-gene. synonym: "Kcna10" RELATED Gene-based [UniProtKB:B2RQA1] synonym: "mKCNA10" EXACT PRO-short-label [PRO:DNx] @@ -120130,7 +120565,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:B2RSH2 name: guanine nucleotide-binding protein G(i) subunit alpha-1 (mouse) namespace: protein -def: "A guanine nucleotide-binding protein G(i) subunit alpha-1 that is encoded in the genome of mouse." [OMA:B2RSH2, PANTHER:PTHR10218\:SF128, PRO:DNx] +def: "A guanine nucleotide-binding protein G(i) subunit alpha-1 that is encoded in the genome of mouse." [OMA:B2RSH2, PRO:DNx] comment: Category=organism-gene. synonym: "adenylate cyclase-inhibiting G alpha protein (mouse)" RELATED [UniProtKB:B2RSH2] synonym: "Gnai-1" RELATED Gene-based [UniProtKB:B2RSH2] @@ -120165,7 +120600,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:B2RUR8 name: OTU domain-containing protein 7B (mouse) namespace: protein -def: "An OTU domain-containing protein 7B that is encoded in the genome of mouse." [OMA:B2RUR8, PANTHER:PTHR13367\:SF6, PRO:DNx] +def: "An OTU domain-containing protein 7B that is encoded in the genome of mouse." [OMA:B2RUR8, PRO:DNx] comment: Category=organism-gene. synonym: "cellular zinc finger anti-NF-kappa-B protein (mouse)" EXACT [UniProtKB:B2RUR8] synonym: "mOTUD7B" EXACT PRO-short-label [PRO:DNx] @@ -120445,7 +120880,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:C0HKG5 name: ribonuclease T2-A (mouse) namespace: protein -def: "A ribonuclease T2 that is encoded in the genome of mouse." [OMA:C0HKG5, PRO:DNx] +def: "A ribonuclease T2 that is encoded in the genome of mouse." [PRO:DNx] comment: Category=organism-gene. synonym: "mRNASET2" EXACT PRO-short-label [PRO:DNx] synonym: "ribonuclease 6-A (mouse)" EXACT [UniProtKB:C0HKG5] @@ -120476,17 +120911,19 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:C9JXX5 -name: protein Frey (human) +name: protein Frey 1 (human) namespace: protein -def: "A protein Frey that is encoded in the genome of human." [PRO:DNx, UniProtKB:C9JXX5] +def: "A protein Frey 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:C9JXX5] comment: Category=organism-gene. synonym: "C11orf94" RELATED Gene-based [UniProtKB:C9JXX5] synonym: "FREY" RELATED Gene-based [UniProtKB:C9JXX5] -synonym: "hC11orf94" EXACT PRO-short-label [PRO:DNx] +synonym: "Frey regulator of sperm-oocyte fusion 1 (human)" EXACT [UniProtKB:C9JXX5] +synonym: "FREY1" RELATED Gene-based [UniProtKB:C9JXX5] +synonym: "hFREY1" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:C9JXX5 is_a: PR:000029067 ! Homo sapiens protein -is_a: PR:000059732 ! protein Frey -intersection_of: PR:000059732 ! protein Frey +is_a: PR:000059732 ! protein Frey 1 +intersection_of: PR:000059732 ! protein Frey 1 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -120552,6 +120989,22 @@ intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=6949 ! NLGN1 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: PR:D3YUE4 +name: protein FAM151B (mouse) +namespace: protein +def: "A protein FAM151B that is encoded in the genome of mouse." [OMA:D3YUE4, PRO:DNx] +comment: Category=organism-gene. +synonym: "Fam151b" RELATED Gene-based [UniProtKB:D3YUE4] +synonym: "mFAM151B" EXACT PRO-short-label [PRO:DNx] +xref: UniProtKB:D3YUE4 +is_a: PR:000029032 ! Mus musculus protein +is_a: PR:000031620 ! protein FAM151B +intersection_of: PR:000031620 ! protein FAM151B +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1921192 ! Fam151b (mouse) +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: PR:D3YVE8 name: solute carrier family 35 member G2 (mouse) @@ -120636,6 +121089,26 @@ intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:3613677 ! Shank1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: PR:D3YZZ2 +name: transforming growth factor-beta receptor type 3-like protein (mouse) +namespace: protein +def: "A transforming growth factor-beta receptor type 3-like protein that is encoded in the genome of mouse." [OMA:D3YZZ2, PRO:DNx] +comment: Category=organism-gene. +synonym: "Gm14378" RELATED Gene-based [UniProtKB:D3YZZ2] +synonym: "mTGFBR3L" EXACT PRO-short-label [PRO:DNx] +synonym: "TGF-beta receptor type-3-like protein (mouse)" EXACT [UniProtKB:D3YZZ2] +synonym: "Tgfbr3l" RELATED Gene-based [UniProtKB:D3YZZ2] +synonym: "TGFR-3L (mouse)" EXACT [UniProtKB:D3YZZ2] +synonym: "transforming growth factor, beta receptor III-like (mouse)" EXACT [UniProtKB:D3YZZ2] +xref: UniProtKB:D3YZZ2 +is_a: PR:000029032 ! Mus musculus protein +is_a: PR:000032046 ! transforming growth factor-beta receptor type 3-like protein +intersection_of: PR:000032046 ! transforming growth factor-beta receptor type 3-like protein +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:3833469 ! Tgfbr3l (mouse) +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: PR:D3Z1Q2 name: melanocortin-2 receptor accessory protein 2 (mouse) @@ -120656,7 +121129,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:D3Z3K2 name: E3 ubiquitin-protein ligase CCNB1IP1 (mouse) namespace: protein -def: "An E3 ubiquitin-protein ligase CCNB1IP1 that is encoded in the genome of mouse." [OMA:D3Z3K2, PANTHER:PTHR14305\:SF0, PRO:DNx] +def: "An E3 ubiquitin-protein ligase CCNB1IP1 that is encoded in the genome of mouse." [OMA:D3Z3K2, PRO:DNx] comment: Category=organism-gene. synonym: "Ccnb1ip1" RELATED Gene-based [UniProtKB:D3Z3K2] synonym: "cyclin-B1-interacting protein 1 (mouse)" EXACT [UniProtKB:D3Z3K2] @@ -120677,7 +121150,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:D3Z4I3 name: RNA-binding protein 24 (mouse) namespace: protein -def: "An RNA-binding protein 24 that is encoded in the genome of mouse." [OMA:D3Z4I3, PANTHER:PTHR24011\:SF25, PRO:DNx] +def: "An RNA-binding protein 24 that is encoded in the genome of mouse." [OMA:D3Z4I3, PRO:DNx] comment: Category=organism-gene. synonym: "mRBM24" EXACT PRO-short-label [PRO:DNx] synonym: "Rbm24" RELATED Gene-based [UniProtKB:D3Z4I3] @@ -120726,7 +121199,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:D3Z7H8 name: cartilage intermediate layer protein 2 (mouse) namespace: protein -def: "A cartilage intermediate layer protein 2 that is encoded in the genome of mouse." [OMA:D3Z7H8, PANTHER:PTHR15031\:SF0, PRO:DNx] +def: "A cartilage intermediate layer protein 2 that is encoded in the genome of mouse." [OMA:D3Z7H8, PRO:DNx] comment: Category=organism-gene. synonym: "Cilp2" RELATED Gene-based [UniProtKB:D3Z7H8] synonym: "mCILP2" EXACT PRO-short-label [PRO:DNx] @@ -120759,17 +121232,18 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:D4PHA7 -name: WSC domain-containing protein 2 (mouse) +name: sialate:O-sulfotransferase 2 (mouse) namespace: protein -def: "A WSC domain-containing protein 2 that is encoded in the genome of mouse." [OMA:D4PHA7, PRO:DNx] +def: "A sialate:O-sulfotransferase 2 that is encoded in the genome of mouse." [OMA:D4PHA7, PRO:DNx] comment: Category=organism-gene. synonym: "Kiaa0789" RELATED Gene-based [UniProtKB:D4PHA7] synonym: "mWSCD2" EXACT PRO-short-label [PRO:DNx] +synonym: "WSC domain-containing protein 2 (mouse)" EXACT [UniProtKB:D4PHA7] synonym: "Wscd2" RELATED Gene-based [UniProtKB:D4PHA7] xref: UniProtKB:D4PHA7 is_a: PR:000029032 ! Mus musculus protein -is_a: PR:000030696 ! WSC domain-containing protein 2 -intersection_of: PR:000030696 ! WSC domain-containing protein 2 +is_a: PR:000030696 ! sialate:O-sulfotransferase 2 +intersection_of: PR:000030696 ! sialate:O-sulfotransferase 2 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2445030 ! Wscd2 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -121140,7 +121614,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:E1C1U1 name: retinaldehyde-binding protein 1 (chicken) namespace: protein -def: "A retinaldehyde-binding protein 1 that is encoded in the genome of chicken." [OMA:E1C1U1, PANTHER:PTHR10174\:SF20, PRO:DNx] +def: "A retinaldehyde-binding protein 1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "cellular retinaldehyde-binding protein (chicken)" EXACT [UniProtKB:E1C1U1] synonym: "chick-RLBP1" EXACT PRO-short-label [PRO:DNx] @@ -121322,7 +121796,9 @@ is_a: PR:000029063 ! Gallus gallus protein is_a: PR:000060002 ! D-aminoacyl-tRNA deacylase 2 intersection_of: PR:000060002 ! D-aminoacyl-tRNA deacylase 2 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/770817 ! DTD2 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00000009978 ! DTD2 copy 1 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00010005617.1 ! DTD2 copy 2 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00015006398 ! DTD2 copy 3 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] @@ -121382,6 +121858,7 @@ is_a: PR:000029063 ! Gallus gallus protein is_a: PR:000032824 ! tRNA wybutosine-synthesizing protein 5 intersection_of: PR:000032824 ! tRNA wybutosine-synthesizing protein 5 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00000008145 ! TYW5 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] @@ -121417,7 +121894,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:E1C8P7 name: cell adhesion molecule DSCAML1 (chicken) namespace: protein -def: "A cell adhesion molecule DSCAML1 that is encoded in the genome of chicken." [OMA:E1C8P7, PRO:DNx] +def: "A cell adhesion molecule DSCAML1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-DSCAML1" EXACT PRO-short-label [PRO:DNx] synonym: "Down syndrome cell adhesion molecule-like protein 1 homolog (chicken)" EXACT [UniProtKB:E1C8P7] @@ -121427,6 +121904,7 @@ is_a: PR:000006696 ! cell adhesion molecule DSCAML1 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000006696 ! cell adhesion molecule DSCAML1 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00000007314 ! DSCAML1 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] @@ -121564,7 +122042,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:E9PZ19 name: protein turtle homolog B (mouse) namespace: protein -def: "A protein turtle homolog B that is encoded in the genome of mouse." [OMA:E9PZ19, PANTHER:PTHR10489\:SF2, PRO:DNx] +def: "A protein turtle homolog B that is encoded in the genome of mouse." [OMA:E9PZ19, PRO:DNx] comment: Category=organism-gene. synonym: "Igsf9b" RELATED Gene-based [UniProtKB:E9PZ19] synonym: "immunoglobulin superfamily member 9B (mouse)" EXACT [UniProtKB:E9PZ19] @@ -121601,7 +122079,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:E9Q4J9 name: adhesion G-protein coupled receptor F2 (mouse) namespace: protein -def: "An adhesion G-protein coupled receptor F2 that is encoded in the genome of mouse." [OMA:E9Q4J9, PRO:DNx] +def: "A putative adhesion G protein-coupled receptor F2P that is encoded in the genome of mouse." [OMA:E9Q4J9, PRO:DNx] comment: Category=organism-gene. synonym: "Adgrf2" RELATED Gene-based [UniProtKB:E9Q4J9] synonym: "G-protein coupled receptor 111 (mouse)" EXACT [UniProtKB:E9Q4J9] @@ -121611,8 +122089,8 @@ synonym: "mADGRF2" EXACT PRO-short-label [PRO:DNx] synonym: "Pgr20" RELATED Gene-based [UniProtKB:E9Q4J9] xref: UniProtKB:E9Q4J9 is_a: PR:000029032 ! Mus musculus protein -is_a: PR:000031052 ! adhesion G-protein coupled receptor F2 -intersection_of: PR:000031052 ! adhesion G-protein coupled receptor F2 +is_a: PR:000031052 ! putative adhesion G protein-coupled receptor F2P +intersection_of: PR:000031052 ! putative adhesion G protein-coupled receptor F2P intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2182728 ! Adgrf2 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -121659,7 +122137,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:E9Q5Z5 name: Fanconi anemia group F protein (mouse) namespace: protein -def: "A Fanconi anemia group F protein that is encoded in the genome of mouse." [OMA:E9Q5Z5, PANTHER:PTHR14449\:SF0, PRO:DNx] +def: "A Fanconi anemia group F protein that is encoded in the genome of mouse." [OMA:E9Q5Z5, PRO:DNx] comment: Category=organism-gene. synonym: "Fancf" RELATED Gene-based [UniProtKB:E9Q5Z5] synonym: "mFANCF" EXACT PRO-short-label [PRO:DNx] @@ -121760,7 +122238,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:E9QA28 name: carcinoembryonic antigen-related cell adhesion molecule 16 (mouse) namespace: protein -def: "A carcinoembryonic antigen-related cell adhesion molecule 16 that is encoded in the genome of mouse." [OMA:E9QA28, PANTHER:PTHR19955\:SF46, PRO:DNx] +def: "A carcinoembryonic antigen-related cell adhesion molecule 16 that is encoded in the genome of mouse." [OMA:E9QA28, PRO:DNx] comment: Category=organism-gene. synonym: "Ceacam16" RELATED Gene-based [UniProtKB:E9QA28] synonym: "mCEACAM16" EXACT PRO-short-label [PRO:DNx] @@ -121785,7 +122263,9 @@ is_a: PR:000029063 ! Gallus gallus protein is_a: PR:000060157 ! carnosine N-methyltransferase intersection_of: PR:000060157 ! carnosine N-methyltransferase intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/427256 ! CARNMT1 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00000015155 ! CARNMT1 copy 1 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00010015413.1 ! CARNMT1 copy 2 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00015030055 ! CARNMT1 copy 3 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] @@ -121801,6 +122281,7 @@ is_a: PR:000015739 ! serine/threonine-protein kinase 10 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000015739 ! serine/threonine-protein kinase 10 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00000002816 ! STK10 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] @@ -121851,7 +122332,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:F1NLH9 name: inosine triphosphate pyrophosphatase (chicken) namespace: protein -def: "An inosine triphosphate pyrophosphatase that is encoded in the genome of chicken." [OMA:F1NLH9, PANTHER:PTHR11067\:SF7, PRO:DNx] +def: "An inosine triphosphate pyrophosphatase that is encoded in the genome of chicken." [OMA:F1NLH9, PRO:DNx] comment: Category=organism-gene. synonym: "chick-ITPA" EXACT PRO-short-label [PRO:DNx] synonym: "inosine triphosphatase (chicken)" EXACT [UniProtKB:F1NLH9] @@ -121889,7 +122370,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:F1NPQ2 name: multiple inositol polyphosphate phosphatase 1 (chicken) namespace: protein -def: "A multiple inositol polyphosphate phosphatase 1 that is encoded in the genome of chicken." [PRO:DNx] +def: "A multiple inositol polyphosphate phosphatase 1 that is encoded in the genome of chicken." [OMA:F1NPQ2, PRO:DNx] comment: Category=organism-gene. synonym: "2,3-bisphosphoglycerate 3-phosphatase (chicken)" EXACT [UniProtKB:F1NPQ2] synonym: "2,3-BPG phosphatase (chicken)" EXACT [UniProtKB:F1NPQ2] @@ -121910,7 +122391,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:F1NQJ3 name: mismatch repair endonuclease PMS2 (chicken) namespace: protein -def: "A mismatch repair endonuclease PMS2 that is encoded in the genome of chicken." [OMA:F1NQJ3, PRO:DNx] +def: "A mismatch repair endonuclease PMS2 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-PMS2" EXACT PRO-short-label [PRO:DNx] synonym: "DNA mismatch repair protein PMS2 (chicken)" EXACT [UniProtKB:F1NQJ3] @@ -121921,7 +122402,9 @@ is_a: PR:000012914 ! mismatch repair endonuclease PMS2 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000012914 ! mismatch repair endonuclease PMS2 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/101752182 ! PMS2 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00000003430 ! PMS2 copy 1 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00010021776.1 ! PMS2 copy 2 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00015024139 ! PMS2 copy 3 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] @@ -121945,7 +122428,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:F1NV61 name: caspase-7 (chicken) namespace: protein -def: "A caspase-7 that is encoded in the genome of chicken." [OMA:F1NV61, PRO:DNx] +def: "A caspase-7 that is encoded in the genome of chicken." [PRO:CNA] comment: Category=organism-gene. synonym: "CASP-7 (chicken)" EXACT [UniProtKB:F1NV61] synonym: "CASP7" RELATED Gene-based [UniProtKB:F1NV61] @@ -122046,7 +122529,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:F6W8I0 name: YjeF N-terminal domain-containing protein 3 (mouse) namespace: protein -def: "A YjeF N-terminal domain-containing protein 3 that is encoded in the genome of mouse." [OMA:F6W8I0, PANTHER:PTHR13232\:SF4, PRO:DNx] +def: "A YjeF N-terminal domain-containing protein 3 that is encoded in the genome of mouse." [OMA:F6W8I0, PRO:DNx] comment: Category=organism-gene. synonym: "Aibp2" RELATED Gene-based [UniProtKB:F6W8I0] synonym: "ApoA-I-binding protein 2 (mouse)" EXACT [UniProtKB:F6W8I0] @@ -122157,7 +122640,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:G5E8V9 name: arfaptin-1 (mouse) namespace: protein -def: "An arfaptin-1 that is encoded in the genome of mouse." [OMA:G5E8V9, PANTHER:PTHR12141\:SF1, PRO:DNx] +def: "An arfaptin-1 that is encoded in the genome of mouse." [OMA:G5E8V9, PRO:DNx] comment: Category=organism-gene. synonym: "ADP-ribosylation factor-interacting protein 1 (mouse)" EXACT [UniProtKB:G5E8V9] synonym: "Arfip1" RELATED Gene-based [UniProtKB:G5E8V9] @@ -122177,6 +122660,7 @@ namespace: protein def: "An uncharacterized protein C19orf84 that is encoded in the genome of mouse." [OMA:H3BKT1, PRO:DNx] comment: Category=organism-gene. synonym: "Gm38999" RELATED Gene-based [UniProtKB:H3BKT1] +synonym: "Gm52993" RELATED Gene-based [UniProtKB:H3BKT1] synonym: "mC19orf84" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:H3BKT1 is_a: PR:000029032 ! Mus musculus protein @@ -122249,6 +122733,23 @@ intersection_of: PR:000060168 ! uncharacterized protein C19orf84 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: PR:J3QPC3 +name: actin maturation protease (mouse) +namespace: protein +def: "An actin maturation protease that is encoded in the genome of mouse." [OMA:J3QPC3, PRO:DNx] +comment: Category=organism-gene. +synonym: "actin aminopeptidase ACTMAP (mouse)" EXACT [UniProtKB:J3QPC3] +synonym: "Actmap" RELATED Gene-based [UniProtKB:J3QPC3] +synonym: "mACTMAP" EXACT PRO-short-label [PRO:DNx] +xref: UniProtKB:J3QPC3 +is_a: PR:000029032 ! Mus musculus protein +is_a: PR:000059810 ! actin maturation protease +intersection_of: PR:000059810 ! actin maturation protease +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:3041247 ! Actmap (mouse) +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: PR:J3S6Y1 name: thrombospondin-type laminin G domain and EAR repeat-containing protein (mouse) @@ -124256,27 +124757,6 @@ intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:109356 ! Snap23 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus -[Term] -id: PR:O09049 -name: regenerating islet-derived protein 3-gamma (mouse) -namespace: protein -def: "A regenerating islet-derived protein 3-gamma that is encoded in the genome of mouse." [PRO:DNx] -comment: Category=organism-gene. -synonym: "mREG3G" EXACT PRO-short-label [PRO:DNx] -synonym: "pancreatitis-associated protein 3 (mouse)" EXACT [UniProtKB:O09049] -synonym: "Pap3" RELATED Gene-based [UniProtKB:O09049] -synonym: "Reg III-gamma (mouse)" EXACT [UniProtKB:O09049] -synonym: "REG-3-gamma (mouse)" EXACT [UniProtKB:O09049] -synonym: "Reg3g" RELATED Gene-based [UniProtKB:O09049] -synonym: "regenerating islet-derived protein III-gamma (mouse)" EXACT [UniProtKB:O09049] -xref: UniProtKB:O09049 -is_a: PR:000013872 ! regenerating islet-derived protein 3-gamma -is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000013872 ! regenerating islet-derived protein 3-gamma -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:109406 ! Reg3g (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus - [Term] id: PR:O09051 name: guanylate cyclase activator 2B (mouse) @@ -124583,7 +125063,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:O12940 name: target of Myb1 membrane trafficking protein (chicken) namespace: protein -def: "A target of Myb1 membrane trafficking protein that is encoded in the genome of chicken." [OMA:O12940, PANTHER:PTHR13856\:SF32, PRO:DNx] +def: "A target of Myb1 membrane trafficking protein that is encoded in the genome of chicken." [OMA:O12940, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TOM1" EXACT PRO-short-label [PRO:DNx] synonym: "target of Myb protein 1 (chicken)" EXACT [UniProtKB:O12940] @@ -124635,7 +125115,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O13154 name: protein kinase C and casein kinase substrate in neurons protein 2 (chicken) namespace: protein -def: "A protein kinase C and casein kinase substrate in neurons protein 2 that is encoded in the genome of chicken." [OMA:O13154, PANTHER:PTHR10959\:SF2, PRO:DNx] +def: "A protein kinase C and casein kinase substrate in neurons protein 2 that is encoded in the genome of chicken." [OMA:O13154, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PACSIN2" EXACT PRO-short-label [PRO:DNx] synonym: "FAP52 (chicken)" EXACT [UniProtKB:O13154] @@ -124653,7 +125133,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O13268 name: proteasome subunit alpha type-7 (chicken) namespace: protein -def: "A proteasome subunit alpha type-7 that is encoded in the genome of chicken." [OMA:O13268, PANTHER:PTHR11599\:SF15, PRO:DNx] +def: "A proteasome subunit alpha type-7 that is encoded in the genome of chicken." [OMA:O13268, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PSMA7" EXACT PRO-short-label [PRO:DNx] synonym: "GPRO-28 (chicken)" EXACT [UniProtKB:O13268] @@ -124945,6 +125425,7 @@ def: "A eukaryotic translation initiation factor 1A, Y-chromosomal that is encod comment: Category=organism-gene. synonym: "eIF-1A Y isoform (human)" EXACT [UniProtKB:O14602] synonym: "eIF-4C (human)" BROAD [UniProtKB:O14602] +synonym: "eIF1A Y isoform (human)" EXACT [UniProtKB:O14602] synonym: "EIF1AY" RELATED Gene-based [UniProtKB:O14602] synonym: "eukaryotic translation initiation factor 4C (human)" BROAD [UniProtKB:O14602] synonym: "hEIF1AY" EXACT PRO-short-label [PRO:DNx] @@ -125219,7 +125700,7 @@ def: "A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 that is encoded in the g comment: Category=organism-gene. synonym: "EBP50 (human)" EXACT [UniProtKB:O14745] synonym: "ezrin-radixin-moesin-binding phosphoprotein 50 (human)" EXACT [UniProtKB:O14745] -synonym: "hSLC9A3R1" EXACT PRO-short-label [PRO:DNx] +synonym: "hNHERF1" EXACT PRO-short-label [PRO:DNx] synonym: "NHERF" RELATED Gene-based [UniProtKB:O14745] synonym: "NHERF-1 (human)" EXACT [UniProtKB:O14745] synonym: "NHERF1" RELATED Gene-based [UniProtKB:O14745] @@ -125575,6 +126056,8 @@ synonym: "BACH1" RELATED Gene-based [UniProtKB:O14867] synonym: "BTB and CNC homolog 1 (human)" EXACT [UniProtKB:O14867] synonym: "HA2303 (human)" EXACT [UniProtKB:O14867] synonym: "hBACH1" EXACT PRO-short-label [PRO:DNx] +xref: Reactome:R-HSA-9707688 "PR:O14867 located_in GO:0005654" +xref: Reactome:R-HSA-9708429 "PR:O14867 located_in GO:0005829" xref: UniProtKB:O14867 is_a: PR:000004617 ! transcription regulator protein BACH1 is_a: PR:000029067 ! Homo sapiens protein @@ -125666,6 +126149,7 @@ synonym: "RGS19IP1" RELATED Gene-based [UniProtKB:O14908] synonym: "synectin (human)" EXACT [UniProtKB:O14908] synonym: "Tax interaction protein 2 (human)" EXACT [UniProtKB:O14908] synonym: "TIP-2 (human)" EXACT [UniProtKB:O14908] +xref: Reactome:R-HSA-9839329 "PR:O14908 located_in GO:0005737" xref: UniProtKB:O14908 is_a: PR:000007987 ! PDZ domain-containing protein GIPC1 is_a: PR:000029067 ! Homo sapiens protein @@ -125729,6 +126213,7 @@ synonym: "I-kappa-B kinase 2 (human)" EXACT [UniProtKB:O14920] synonym: "I-kappa-B-kinase beta (human)" EXACT [UniProtKB:O14920] synonym: "IKBKB" RELATED Gene-based [UniProtKB:O14920] synonym: "IkBKB (human)" EXACT [UniProtKB:O14920] +synonym: "IKK-2 (human)" EXACT [UniProtKB:O14920] synonym: "IKK-B (human)" EXACT [UniProtKB:O14920] synonym: "IKK-beta (human)" EXACT [UniProtKB:O14920] synonym: "IKK2 (human)" EXACT [UniProtKB:O14920] @@ -126325,6 +126810,8 @@ synonym: "PGRMC2" RELATED Gene-based [UniProtKB:O15173] synonym: "PMBP" RELATED Gene-based [UniProtKB:O15173] synonym: "progesterone membrane-binding protein (human)" EXACT [UniProtKB:O15173] synonym: "steroid receptor protein DG6 (human)" EXACT [UniProtKB:O15173] +xref: Reactome:R-HSA-9714349 "PR:O15173 located_in GO:0005789" +xref: Reactome:R-HSA-9715090 "PR:O15173 located_in GO:0010008" xref: UniProtKB:O15173 is_a: PR:000012623 ! membrane-associated progesterone receptor component 2 is_a: PR:000029067 ! Homo sapiens protein @@ -127383,7 +127870,7 @@ is_a: PR:000004498 ! ATPase inhibitor, mitochondrial is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000004498 ! ATPase inhibitor, mitochondrial intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1196457 ! Atpif1 (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1196457 ! Atp5if1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -127427,6 +127914,23 @@ intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:97302 ! Nedd9 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: PR:O35181 +name: pro-neuregulin-3, membrane-bound isoform (mouse) +namespace: protein +def: "A pro-neuregulin-3, membrane-bound isoform that is encoded in the genome of mouse." [OMA:O35181, PRO:DNx] +comment: Category=organism-gene. +synonym: "mNRG3" EXACT PRO-short-label [PRO:DNx] +synonym: "Nrg3" RELATED Gene-based [UniProtKB:O35181] +synonym: "pro-NRG3 (mouse)" EXACT [UniProtKB:O35181] +xref: UniProtKB:O35181 +is_a: PR:000011424 ! pro-neuregulin-3, membrane-bound isoform +is_a: PR:000029032 ! Mus musculus protein +intersection_of: PR:000011424 ! pro-neuregulin-3, membrane-bound isoform +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1097165 ! Nrg3 (mouse) +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: PR:O35205 name: granzyme K (mouse) @@ -127973,6 +128477,26 @@ intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1329033 ! Agxt (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: PR:O35426 +name: X-box-binding protein 1 (mouse) +namespace: protein +def: "An X-box-binding protein 1 that is encoded in the genome of mouse." [OMA:O35426, PRO:DNx] +comment: Category=organism-gene. +synonym: "mXBP1" EXACT PRO-short-label [PRO:DNx] +synonym: "Tax-responsive element-binding protein 5 (mouse)" EXACT [UniProtKB:O35426] +synonym: "TREB-5 (mouse)" EXACT [UniProtKB:O35426] +synonym: "Treb5" RELATED Gene-based [UniProtKB:O35426] +synonym: "XBP-1 (mouse)" EXACT [UniProtKB:O35426] +synonym: "Xbp1" RELATED Gene-based [UniProtKB:O35426] +xref: UniProtKB:O35426 +is_a: PR:000017476 ! X-box-binding protein 1 +is_a: PR:000029032 ! Mus musculus protein +intersection_of: PR:000017476 ! X-box-binding protein 1 +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:98970 ! Xbp1 (mouse) +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: PR:O35427 name: DNA-directed RNA polymerase III subunit RPC9 (mouse) @@ -128787,7 +129311,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:O42101 name: nuclear receptor subfamily 5 group A member 2 (chicken) namespace: protein -def: "A nuclear receptor subfamily 5 group A member 2 that is encoded in the genome of chicken." [OMA:O42101, PANTHER:PTHR24086\:SF205, PRO:DNx] +def: "A nuclear receptor subfamily 5 group A member 2 that is encoded in the genome of chicken." [OMA:O42101, PRO:DNx] comment: Category=organism-gene. synonym: "chick-NR5A2" EXACT PRO-short-label [PRO:DNx] synonym: "FTF/LRH-1 (chicken)" EXACT [UniProtKB:O42101] @@ -128805,7 +129329,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O42148 name: ornithine decarboxylase antizyme 1 (chicken) namespace: protein -def: "An ornithine decarboxylase antizyme that is encoded in the genome of chicken." [OMA:O42148, PANTHER:PTHR10279\:SF2, PRO:DNx] +def: "An ornithine decarboxylase antizyme that is encoded in the genome of chicken." [OMA:O42148, PRO:DNx] comment: Category=organism-gene. synonym: "chick-OAZ1" EXACT PRO-short-label [PRO:DNx] synonym: "OAZ" RELATED Gene-based [UniProtKB:O42148] @@ -128822,7 +129346,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O42163 name: cochlin (chicken) namespace: protein -def: "A cochlin that is encoded in the genome of chicken." [PANTHER:PTHR22992\:SF10, PRO:DNx] +def: "A cochlin that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-COCH" EXACT PRO-short-label [PRO:DNx] synonym: "COCH" RELATED Gene-based [UniProtKB:O42163] @@ -128840,7 +129364,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O42235 name: keratocan (chicken) namespace: protein -def: "A keratocan that is encoded in the genome of chicken." [OMA:O42235, PANTHER:PTHR24371\:SF113, PRO:DNx] +def: "A keratocan that is encoded in the genome of chicken." [OMA:O42235, PRO:DNx] comment: Category=organism-gene. synonym: "chick-KERA" EXACT PRO-short-label [PRO:DNx] synonym: "KERA" RELATED Gene-based [UniProtKB:O42235] @@ -128877,7 +129401,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O42252 name: LIM domain-binding protein 1 (chicken) namespace: protein -def: "A LIM domain-binding protein 1 that is encoded in the genome of chicken." [OMA:O42252, PANTHER:PTHR10378\:SF7, PRO:DNx] +def: "A LIM domain-binding protein 1 that is encoded in the genome of chicken." [OMA:O42252, PRO:DNx] comment: Category=organism-gene. synonym: "carboxyl-terminal LIM domain-binding protein 2 (chicken)" EXACT [UniProtKB:O42252] synonym: "chick-LDB1" EXACT PRO-short-label [PRO:DNx] @@ -128902,7 +129426,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O42265 name: proteasome subunit alpha type-1 (chicken) namespace: protein -def: "A proteasome subunit alpha type-1 that is encoded in the genome of chicken." [PANTHER:PTHR11599\:SF12, PRO:DNx] +def: "A proteasome subunit alpha type-1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-PSMA1" EXACT PRO-short-label [PRO:DNx] synonym: "macropain subunit C2 (chicken)" EXACT [UniProtKB:O42265] @@ -128921,7 +129445,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O42392 name: vitamin D3 receptor (chicken) namespace: protein -def: "A vitamin D3 receptor that is encoded in the genome of chicken." [OMA:O42392, PANTHER:PTHR24082\:SF166, PRO:DNx] +def: "A vitamin D3 receptor that is encoded in the genome of chicken." [OMA:O42392, PRO:DNx] comment: Category=organism-gene. synonym: "1,25-dihydroxyvitamin D3 receptor (chicken)" EXACT [UniProtKB:O42392] synonym: "chick-VDR" EXACT PRO-short-label [PRO:DNx] @@ -128940,7 +129464,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O42413 name: matrix Gla protein (chicken) namespace: protein -def: "A matrix Gla protein that is encoded in the genome of chicken." [OMA:O42413, PANTHER:PTHR10109\:SF0, PRO:DNx] +def: "A matrix Gla protein that is encoded in the genome of chicken." [OMA:O42413, PRO:DNx] comment: Category=organism-gene. synonym: "chick-MGP" EXACT PRO-short-label [PRO:DNx] synonym: "MGP" RELATED Gene-based [UniProtKB:O42413] @@ -128956,7 +129480,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O42414 name: neurofascin (chicken) namespace: protein -def: "A neurofascin that is encoded in the genome of chicken." [PANTHER:PTHR10489\:SF41, PRO:DNx] +def: "A neurofascin that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-NFASC" EXACT PRO-short-label [PRO:DNx] synonym: "NFASC" RELATED Gene-based [UniProtKB:O42414] @@ -128972,7 +129496,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O42422 name: ephrin type-A receptor 7 (chicken) namespace: protein -def: "An ephrin type-A receptor 7 that is encoded in the genome of chicken." [OMA:O42422, PANTHER:PTHR24416\:SF341, PRO:DNx] +def: "An ephrin type-A receptor 7 that is encoded in the genome of chicken." [OMA:O42422, PRO:DNx] comment: Category=organism-gene. synonym: "CEK11" RELATED Gene-based [UniProtKB:O42422] synonym: "cEK11 (chicken)" EXACT [UniProtKB:O42422] @@ -129490,19 +130014,20 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:O43423 -name: acidic leucine-rich nuclear phosphoprotein 32 family member C (human) +name: putative uncharacterized protein ANP32CP (human) namespace: protein -def: "An acidic leucine-rich nuclear phosphoprotein 32 family member C that is encoded in the genome of human." [PRO:DNx, UniProtKB:O43423] +def: "A putative uncharacterized protein ANP32CP that is encoded in the genome of human." [PRO:DNx, UniProtKB:O43423] comment: Category=organism-gene. -synonym: "ANP32C" RELATED Gene-based [UniProtKB:O43423] +synonym: "acidic leucine-rich nuclear phosphoprotein 32 family member C (human)" EXACT [UniProtKB:O43423] +synonym: "ANP32CP" RELATED Gene-based [UniProtKB:O43423] synonym: "hANP32C" EXACT PRO-short-label [PRO:DNx] synonym: "phosphoprotein 32-related protein 1 (human)" EXACT [UniProtKB:O43423] synonym: "PP32R1" RELATED Gene-based [UniProtKB:O43423] synonym: "tumorigenic protein pp32r1 (human)" EXACT [UniProtKB:O43423] xref: UniProtKB:O43423 is_a: PR:000029067 ! Homo sapiens protein -is_a: PR:000032654 ! acidic leucine-rich nuclear phosphoprotein 32 family member C -intersection_of: PR:000032654 ! acidic leucine-rich nuclear phosphoprotein 32 family member C +is_a: PR:000032654 ! putative uncharacterized protein ANP32CP +intersection_of: PR:000032654 ! putative uncharacterized protein ANP32CP intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -129750,7 +130275,7 @@ name: linker for activation of T-cells family member 1 (human) namespace: protein def: "A linker for activation of T-cells family member 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:O43561] comment: Category=organism-gene. -synonym: "36 kDa phospho-tyrosine adapter protein (human)" EXACT [UniProtKB:O43561] +synonym: "36 kDa phosphotyrosine adapter protein (human)" EXACT [UniProtKB:O43561] synonym: "hLAT" EXACT PRO-short-label [PRO:DNx] synonym: "LAT" RELATED Gene-based [UniProtKB:O43561] synonym: "p36-38 (human)" EXACT [UniProtKB:O43561] @@ -129879,19 +130404,20 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:O43598 -name: 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 (human) +name: 5-hydroxymethyl-dUMP N-hydrolase (human) namespace: protein -def: "A 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:O43598] +def: "A 5-hydroxymethyl-dUMP N-hydrolase that is encoded in the genome of human." [PRO:DNx, UniProtKB:O43598] comment: Category=organism-gene. +synonym: "2'-deoxynucleoside 5'-phosphate N-hydrolase 1 (human)" EXACT [UniProtKB:O43598] synonym: "c-Myc-responsive protein RCL (human)" EXACT [UniProtKB:O43598] synonym: "C6orf108" RELATED Gene-based [UniProtKB:O43598] synonym: "DNPH1" RELATED Gene-based [UniProtKB:O43598] synonym: "hDNPH1" EXACT PRO-short-label [PRO:DNx] synonym: "RCL" RELATED Gene-based [UniProtKB:O43598] xref: UniProtKB:O43598 -is_a: PR:000013836 ! 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 +is_a: PR:000013836 ! 5-hydroxymethyl-dUMP N-hydrolase is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000013836 ! 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 +intersection_of: PR:000013836 ! 5-hydroxymethyl-dUMP N-hydrolase intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -130720,7 +131246,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:O54707 name: natural killer cells antigen CD94 (mouse) namespace: protein -def: "A killer cell lectin-like receptor subfamily D member 1 that is encoded in the genome of mouse." [OMA:O54707, PANTHER:PTHR22800\:SF15, PRO:DNx] +def: "A killer cell lectin-like receptor subfamily D member 1 that is encoded in the genome of mouse." [OMA:O54707, PRO:DNx] comment: Category=organism-gene. synonym: "Cd94" RELATED Gene-based [UniProtKB:O54707] synonym: "CD94 (mouse)" EXACT [UniProtKB:O54707] @@ -131251,7 +131777,7 @@ name: linker for activation of T-cells family member 1 (mouse) namespace: protein def: "A linker for activation of T-cells family member 1 that is encoded in the genome of mouse." [OMA:O54957, PRO:DNx] comment: Category=organism-gene. -synonym: "36 kDa phospho-tyrosine adapter protein (mouse)" EXACT [UniProtKB:O54957] +synonym: "36 kDa phosphotyrosine adapter protein (mouse)" EXACT [UniProtKB:O54957] synonym: "Lat" RELATED Gene-based [UniProtKB:O54957] synonym: "mLAT" EXACT PRO-short-label [PRO:DNx] synonym: "p36-38 (mouse)" EXACT [UniProtKB:O54957] @@ -131867,7 +132393,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:O57328 name: frizzled-1 (chicken) namespace: protein -def: "A frizzled-1 that is encoded in the genome of chicken." [PANTHER:PTHR11309\:SF33, PRO:DNx] +def: "A frizzled-1 that is encoded in the genome of chicken." [OMA:O57328, PRO:DNx] comment: Category=organism-gene. synonym: "cFz-1 (chicken)" EXACT [UniProtKB:O57328] synonym: "chick-FZD1" EXACT PRO-short-label [PRO:DNx] @@ -131886,7 +132412,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O57329 name: frizzled-7 (chicken) namespace: protein -def: "A frizzled-7 that is encoded in the genome of chicken." [OMA:O57329, PANTHER:PTHR11309\:SF31, PRO:DNx] +def: "A frizzled-7 that is encoded in the genome of chicken." [OMA:O57329, PRO:DNx] comment: Category=organism-gene. synonym: "cFz-7 (chicken)" EXACT [UniProtKB:O57329] synonym: "chick-FZD7" EXACT PRO-short-label [PRO:DNx] @@ -131905,7 +132431,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O57340 name: thyrotropin subunit beta (chicken) namespace: protein -def: "A thyrotropin subunit beta that is encoded in the genome of chicken." [OMA:O57340, PANTHER:PTHR11515\:SF5, PRO:DNx] +def: "A thyrotropin subunit beta that is encoded in the genome of chicken." [OMA:O57340, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TSHB" EXACT PRO-short-label [PRO:DNx] synonym: "thyroid-stimulating hormone subunit beta (chicken)" EXACT [UniProtKB:O57340] @@ -132729,20 +133255,21 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:O60667 -name: Fas apoptotic inhibitory molecule 3 (human) +name: immunoglobulin mu Fc receptor (human) namespace: protein -def: "A Fas apoptotic inhibitory molecule 3 that is encoded in the genome of human." [PRO:DNx, UniProtKB:O60667] +def: "An immunoglobulin mu Fc receptor that is encoded in the genome of human." [PRO:DNx, UniProtKB:O60667] comment: Category=organism-gene. synonym: "FAIM3" RELATED Gene-based [UniProtKB:O60667] +synonym: "Fas apoptotic inhibitory molecule 3 (human)" EXACT [UniProtKB:O60667] synonym: "FCMR" RELATED Gene-based [UniProtKB:O60667] synonym: "hFCMR" EXACT PRO-short-label [PRO:DNx] -synonym: "IgM Fc fragment receptor (human)" EXACT [UniProtKB:O60667] +synonym: "IgM FcR (human)" EXACT [UniProtKB:O60667] synonym: "regulator of Fas-induced apoptosis Toso (human)" EXACT [UniProtKB:O60667] synonym: "TOSO" RELATED Gene-based [UniProtKB:O60667] xref: UniProtKB:O60667 -is_a: PR:000007329 ! Fas apoptotic inhibitory molecule 3 +is_a: PR:000007329 ! immunoglobulin mu Fc receptor is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000007329 ! Fas apoptotic inhibitory molecule 3 +intersection_of: PR:000007329 ! immunoglobulin mu Fc receptor intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -132752,7 +133279,6 @@ name: cell cycle checkpoint protein RAD1 (human) namespace: protein def: "A cell cycle checkpoint protein RAD1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:O60671] comment: Category=organism-gene. -synonym: "DNA repair exonuclease rad1 homolog (human)" EXACT [UniProtKB:O60671] synonym: "hRAD1" EXACT PRO-short-label [PRO:DNx] synonym: "RAD1" RELATED Gene-based [UniProtKB:O60671] synonym: "Rad1-like DNA damage checkpoint protein (human)" EXACT [UniProtKB:O60671] @@ -132829,6 +133355,8 @@ synonym: "hKPNA6" EXACT PRO-short-label [PRO:DNx] synonym: "IPOA7" RELATED Gene-based [UniProtKB:O60684] synonym: "karyopherin subunit alpha-6 (human)" EXACT [UniProtKB:O60684] synonym: "KPNA6" RELATED Gene-based [UniProtKB:O60684] +xref: Reactome:R-HSA-9734665 "PR:O60684 located_in GO:0005654" +xref: Reactome:R-HSA-9734672 "PR:O60684 located_in GO:0005829" xref: UniProtKB:O60684 is_a: PR:000009437 ! importin subunit alpha-7 is_a: PR:000029067 ! Homo sapiens protein @@ -132966,20 +133494,20 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:O60783 -name: 28S ribosomal protein S14, mitochondrial (human) +name: small ribosomal subunit protein uS14m (human) namespace: protein -def: "A 28S ribosomal protein S14, mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:O60783] +def: "A small ribosomal subunit protein uS14m that is encoded in the genome of human." [PRO:DNx, UniProtKB:O60783] comment: Category=organism-gene. +synonym: "28S ribosomal protein S14, mitochondrial (human)" EXACT [UniProtKB:O60783] synonym: "hMRPS14" EXACT PRO-short-label [PRO:DNx] -synonym: "mitochondrial small ribosomal subunit protein uS14m (human)" EXACT [UniProtKB:O60783] synonym: "MRP-S14 (human)" EXACT [UniProtKB:O60783] synonym: "MRPS14" RELATED Gene-based [UniProtKB:O60783] synonym: "S14mt (human)" EXACT [UniProtKB:O60783] xref: Reactome:R-HSA-5368192 "PR:O60783 located_in GO:0005743" xref: UniProtKB:O60783 -is_a: PR:000010621 ! 28S ribosomal protein S14, mitochondrial +is_a: PR:000010621 ! small ribosomal subunit protein uS14m is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000010621 ! 28S ribosomal protein S14, mitochondrial +intersection_of: PR:000010621 ! small ribosomal subunit protein uS14m intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -134215,7 +134743,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O73775 name: fibulin-1 (chicken) namespace: protein -def: "A fibulin-1 that is encoded in the genome of chicken." [PANTHER:PTHR24048\:SF229, PRO:DNx] +def: "A fibulin-1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-FBLN1" EXACT PRO-short-label [PRO:DNx] synonym: "FBLN1" RELATED Gene-based [UniProtKB:O73775] @@ -134232,7 +134760,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O73884 name: phosphoethanolamine/phosphocholine phosphatase (chicken) namespace: protein -def: "A phosphoethanolamine/phosphocholine phosphatase that is encoded in the genome of chicken." [PANTHER:PTHR20889\:SF0, PRO:DNx] +def: "A phosphoethanolamine/phosphocholine phosphatase that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "3X11A (chicken)" EXACT [UniProtKB:O73884] synonym: "chick-PHOSPHO1" EXACT PRO-short-label [PRO:DNx] @@ -134294,7 +134822,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O73930 name: pterin-4-alpha-carbinolamine dehydratase (chicken) namespace: protein -def: "A pterin-4-alpha-carbinolamine dehydratase that is encoded in the genome of chicken." [PANTHER:PTHR12599\:SF0, PRO:DNx] +def: "A pterin-4-alpha-carbinolamine dehydratase that is encoded in the genome of chicken." [OMA:O73930, PRO:DNx] comment: Category=organism-gene. synonym: "4-alpha-hydroxy-tetrahydropterin dehydratase (chicken)" EXACT [UniProtKB:O73930] synonym: "cDcoH (chicken)" EXACT [UniProtKB:O73930] @@ -134705,6 +135233,7 @@ synonym: "ARFO1" RELATED Gene-based [UniProtKB:O75154] synonym: "arfophilin-1 (human)" EXACT [UniProtKB:O75154] synonym: "EF hands-containing Rab-interacting protein (human)" EXACT [UniProtKB:O75154] synonym: "eferin (human)" EXACT [UniProtKB:O75154] +synonym: "FIP3 (human)" RELATED [UniProtKB:O75154] synonym: "FIP3-Rab11 (human)" EXACT [UniProtKB:O75154] synonym: "hRAB11FIP3" EXACT PRO-short-label [PRO:DNx] synonym: "KIAA0665" RELATED Gene-based [UniProtKB:O75154] @@ -135134,21 +135663,21 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:O75394 -name: 39S ribosomal protein L33, mitochondrial (human) +name: large ribosomal subunit protein bL33m (human) namespace: protein -def: "A 39S ribosomal protein L33, mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:O75394] +def: "A large ribosomal subunit protein bL33m that is encoded in the genome of human." [PRO:DNx, UniProtKB:O75394] comment: Category=organism-gene. +synonym: "39S ribosomal protein L33, mitochondrial (human)" EXACT [UniProtKB:O75394] synonym: "C2orf1" RELATED Gene-based [UniProtKB:O75394] synonym: "hMRPL33" EXACT PRO-short-label [PRO:DNx] synonym: "L33mt (human)" EXACT [UniProtKB:O75394] -synonym: "mitochondrial large ribosomal subunit protein bL33m (human)" EXACT [UniProtKB:O75394] synonym: "MRP-L33 (human)" EXACT [UniProtKB:O75394] synonym: "MRPL33" RELATED Gene-based [UniProtKB:O75394] xref: Reactome:R-HSA-5368172 "PR:O75394 located_in GO:0005743" xref: UniProtKB:O75394 -is_a: PR:000010593 ! 39S ribosomal protein L33, mitochondrial +is_a: PR:000010593 ! large ribosomal subunit protein bL33m is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000010593 ! 39S ribosomal protein L33, mitochondrial +intersection_of: PR:000010593 ! large ribosomal subunit protein bL33m intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -136783,7 +137312,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:O88324 name: CD83 antigen (mouse) namespace: protein -def: "A CD83 molecule that is encoded in the genome of mouse." [OMA:O88324, PANTHER:PTHR15193\:SF0, PRO:DNx] +def: "A CD83 molecule that is encoded in the genome of mouse." [OMA:O88324, PRO:DNx] comment: Category=organism-gene. synonym: "Cd83" RELATED Gene-based [UniProtKB:O88324] synonym: "CD83 (mouse)" EXACT [UniProtKB:O88324] @@ -138168,16 +138697,17 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:O89084 -name: cAMP-specific 3',5'-cyclic phosphodiesterase 4A (mouse) +name: 3',5'-cyclic-AMP phosphodiesterase 4A (mouse) namespace: protein -def: "A cAMP-specific 3',5'-cyclic phosphodiesterase 4A that is encoded in the genome of mouse." [OMA:O89084, PRO:DNx] +def: "A 3',5'-cyclic-AMP phosphodiesterase 4A that is encoded in the genome of mouse." [OMA:O89084, PRO:DNx] comment: Category=organism-gene. +synonym: "cAMP-specific phosphodiesterase 4A (mouse)" EXACT [UniProtKB:O89084] synonym: "mPDE4A" EXACT PRO-short-label [PRO:DNx] synonym: "Pde4a" RELATED Gene-based [UniProtKB:O89084] xref: UniProtKB:O89084 -is_a: PR:000012472 ! cAMP-specific 3',5'-cyclic phosphodiesterase 4A +is_a: PR:000012472 ! 3',5'-cyclic-AMP phosphodiesterase 4A is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000012472 ! cAMP-specific 3',5'-cyclic phosphodiesterase 4A +intersection_of: PR:000012472 ! 3',5'-cyclic-AMP phosphodiesterase 4A intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:99558 ! Pde4a (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -138334,7 +138864,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O93307 name: homeobox protein SIX6 (chicken) namespace: protein -def: "A homeobox protein SIX6 that is encoded in the genome of chicken." [PANTHER:PTHR10390\:SF12, PRO:DNx] +def: "A homeobox protein SIX6 that is encoded in the genome of chicken." [OMA:O93307, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SIX6" EXACT PRO-short-label [PRO:DNx] synonym: "optic homeobox 2 (chicken)" EXACT [UniProtKB:O93307] @@ -138348,7 +138878,8 @@ is_a: PR:000014901 ! homeobox protein SIX6 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000014901 ! homeobox protein SIX6 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/395843 ! SIX6 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00010019860.1 ! SIX6 copy 1 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00015017903 ! SIX6 copy 2 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] @@ -138375,7 +138906,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O93344 name: retinal dehydrogenase 2 (chicken) namespace: protein -def: "A retinal dehydrogenase 2 that is encoded in the genome of chicken." [PRO:DNx] +def: "A retinal dehydrogenase 2 that is encoded in the genome of chicken." [OMA:O93344, PRO:DNx] comment: Category=organism-gene. synonym: "aldehyde dehydrogenase family 1 member A2 (chicken)" EXACT [UniProtKB:O93344] synonym: "ALDH1A2" RELATED Gene-based [UniProtKB:O93344] @@ -138417,7 +138948,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O93388 name: stathmin-3 (chicken) namespace: protein -def: "A stathmin-3 that is encoded in the genome of chicken." [OMA:O93388, PANTHER:PTHR10104\:SF8, PRO:DNx] +def: "A stathmin-3 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-STMN3" EXACT PRO-short-label [PRO:DNx] synonym: "neuroplasticin-2 (chicken)" EXACT [UniProtKB:O93388] @@ -138437,7 +138968,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O93505 name: L-dopachrome tautomerase (chicken) namespace: protein -def: "An L-dopachrome tautomerase that is encoded in the genome of chicken." [PANTHER:PTHR11474\:SF4, PRO:DNx] +def: "An L-dopachrome tautomerase that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-DCT" EXACT PRO-short-label [PRO:DNx] synonym: "DCT" RELATED Gene-based [UniProtKB:O93505] @@ -138476,7 +139007,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:O93567 name: zinc finger and BTB domain-containing protein 7A (chicken) namespace: protein -def: "A zinc finger and BTB domain-containing protein 7A that is encoded in the genome of chicken." [PRO:DNx] +def: "A zinc finger and BTB domain-containing protein 7A that is encoded in the genome of chicken." [OMA:O93567, PRO:DNx] comment: Category=organism-gene. synonym: "chick-ZBTB7A" EXACT PRO-short-label [PRO:DNx] synonym: "cLRF (chicken)" EXACT [UniProtKB:O93567] @@ -138587,6 +139118,7 @@ synonym: "STK10" RELATED Gene-based [UniProtKB:O94804] xref: DTO:03100495 xref: Reactome:R-HSA-6799617 "PR:O94804 located_in GO:0035579" xref: Reactome:R-HSA-6806298 "PR:O94804 located_in GO:0005886" +xref: Reactome:R-HSA-9690312 "PR:O94804 located_in GO:0005829" xref: UniProtKB:O94804 is_a: PR:000015739 ! serine/threonine-protein kinase 10 is_a: PR:000029067 ! Homo sapiens protein @@ -140508,6 +141040,7 @@ synonym: "T-box brain protein 2 (human)" EXACT [UniProtKB:O95936] synonym: "T-brain-2 (human)" EXACT [UniProtKB:O95936] synonym: "TBR-2 (human)" EXACT [UniProtKB:O95936] synonym: "TBR2" RELATED Gene-based [UniProtKB:O95936] +xref: Reactome:R-HSA-452232 "PR:O95936 located_in GO:0005654" xref: UniProtKB:O95936 is_a: PR:000003463 ! eomesodermin is_a: PR:000029067 ! Homo sapiens protein @@ -140619,11 +141152,15 @@ name: diphosphoinositol polyphosphate phosphohydrolase 1 (human) namespace: protein def: "A diphosphoinositol polyphosphate phosphohydrolase 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:O95989] comment: Category=organism-gene. -synonym: "diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 1 (human)" EXACT [UniProtKB:O95989] +synonym: "Ap6A hydrolase (human)" EXACT [UniProtKB:O95989] +synonym: "diadenosine hexaphosphate hydrolase (human)" EXACT [UniProtKB:O95989] synonym: "DIPP" RELATED Gene-based [UniProtKB:O95989] synonym: "DIPP-1 (human)" EXACT [UniProtKB:O95989] synonym: "DIPP1" RELATED Gene-based [UniProtKB:O95989] +synonym: "endopolyphosphatase (human)" EXACT [UniProtKB:O95989] synonym: "hNUDT3" EXACT PRO-short-label [PRO:DNx] +synonym: "m7GpppN-mRNA hydrolase (human)" RELATED [UniProtKB:O95989] +synonym: "m7GpppX diphosphatase (human)" RELATED [UniProtKB:O95989] synonym: "nucleoside diphosphate-linked moiety X motif 3 (human)" EXACT [UniProtKB:O95989] synonym: "nudix motif 3 (human)" EXACT [UniProtKB:O95989] synonym: "NUDT3" RELATED Gene-based [UniProtKB:O95989] @@ -140764,7 +141301,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P00174 name: cytochrome b5 (chicken) namespace: protein -def: "A cytochrome b5 that is encoded in the genome of chicken." [OMA:P00174, PANTHER:PTHR19359\:SF7, PRO:DNx] +def: "A cytochrome b5 that is encoded in the genome of chicken." [OMA:P00174, PRO:DNx] comment: Category=organism-gene. synonym: "chick-CYB5A" EXACT PRO-short-label [PRO:DNx] synonym: "CYB5" RELATED Gene-based [UniProtKB:P00174] @@ -141178,14 +141715,14 @@ is_a: PR:000008735 ! hypoxanthine-guanine phosphoribosyltransferase is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000008735 ! hypoxanthine-guanine phosphoribosyltransferase intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:96217 ! Hprt (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:96217 ! Hprt1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P00504 name: aspartate aminotransferase, cytoplasmic (chicken) namespace: protein -def: "An aspartate aminotransferase, cytoplasmic that is encoded in the genome of chicken." [PANTHER:PTHR11879\:SF0, PRO:DNx] +def: "An aspartate aminotransferase, cytoplasmic that is encoded in the genome of chicken." [OMA:P00504, PRO:DNx] comment: Category=organism-gene. synonym: "cAspAT (chicken)" EXACT [UniProtKB:P00504] synonym: "cCAT (chicken)" EXACT [UniProtKB:P00504] @@ -141234,7 +141771,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P00508 name: aspartate aminotransferase, mitochondrial (chicken) namespace: protein -def: "An aspartate aminotransferase, mitochondrial that is encoded in the genome of chicken." [PANTHER:PTHR11879\:SF0, PRO:DNx] +def: "An aspartate aminotransferase, mitochondrial that is encoded in the genome of chicken." [OMA:P00508, PRO:DNx] comment: Category=organism-gene. synonym: "chick-GOT2" EXACT PRO-short-label [PRO:DNx] synonym: "glutamate oxaloacetate transaminase 2 (chicken)" EXACT [UniProtKB:P00508] @@ -141556,7 +142093,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P01103 name: transcriptional activator Myb (chicken) namespace: protein -def: "A myb proto-oncogene protein that is encoded in the genome of chicken." [PANTHER:PTHR10641\:SF154, PRO:DNx] +def: "A myb proto-oncogene protein that is encoded in the genome of chicken." [OMA:P01103, PRO:DNx] comment: Category=organism-gene. synonym: "chick-MYB" EXACT PRO-short-label [PRO:DNx] synonym: "MYB" RELATED Gene-based [UniProtKB:P01103] @@ -141579,6 +142116,7 @@ synonym: "hNRAS" EXACT PRO-short-label [PRO:DNx] synonym: "HRAS1" RELATED Gene-based [UniProtKB:P01111] synonym: "NRAS" RELATED Gene-based [UniProtKB:P01111] synonym: "transforming protein N-Ras (human)" EXACT [UniProtKB:P01111] +xref: Reactome:R-HSA-9647758 "PR:P01111 located_in GO:0005829" xref: UniProtKB:P01111 is_a: PR:000011416 ! GTPase NRas is_a: PR:000029067 ! Homo sapiens protein @@ -141599,6 +142137,7 @@ synonym: "HRAS" RELATED Gene-based [UniProtKB:P01112] synonym: "HRAS1" RELATED Gene-based [UniProtKB:P01112] synonym: "p21ras (human)" EXACT [UniProtKB:P01112] synonym: "transforming protein p21 (human)" EXACT [UniProtKB:P01112] +xref: Reactome:R-HSA-9647765 "PR:P01112 located_in GO:0005829" xref: UniProtKB:P01112 is_a: PR:000029067 ! Homo sapiens protein is_a: PR:000029705 ! GTPase HRas @@ -142084,20 +142623,20 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P01298 -name: pancreatic prohormone (human) +name: pancreatic polypeptide prohormone (human) namespace: protein -def: "A pancreatic prohormone that is encoded in the genome of human." [PRO:DNx, UniProtKB:P01298] +def: "A pancreatic polypeptide prohormone that is encoded in the genome of human." [PRO:DNx, UniProtKB:P01298] comment: Category=organism-gene. synonym: "hPPY" EXACT PRO-short-label [PRO:DNx] synonym: "obinepitide (human)" EXACT [UniProtKB:P01298] -synonym: "pancreatic polypeptide (human)" EXACT [UniProtKB:P01298] +synonym: "pancreatic polypeptide Y (human)" EXACT [UniProtKB:P01298] +synonym: "PH (human)" EXACT [UniProtKB:P01298] synonym: "PNP" RELATED Gene-based [UniProtKB:P01298] -synonym: "PP (human)" EXACT [UniProtKB:P01298] synonym: "PPY" RELATED Gene-based [UniProtKB:P01298] xref: UniProtKB:P01298 -is_a: PR:000013164 ! pancreatic prohormone +is_a: PR:000013164 ! pancreatic polypeptide prohormone is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000013164 ! pancreatic prohormone +intersection_of: PR:000013164 ! pancreatic polypeptide prohormone intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -142825,7 +143364,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P02007 name: hemoglobin subunit pi (chicken) namespace: protein -def: "A hemoglobin subunit zeta that is encoded in the genome of chicken." [OMA:P02007, PANTHER:PTHR11442\:SF11, PRO:DNx] +def: "A hemoglobin subunit zeta that is encoded in the genome of chicken." [OMA:P02007, PRO:DNx] comment: Category=organism-gene. synonym: "chick-HBZ" EXACT PRO-short-label [PRO:DNx] synonym: "HBZ" RELATED Gene-based [UniProtKB:P02007] @@ -143165,11 +143704,36 @@ intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=49636 ! MYL3 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: PR:P02609 +name: myosin regulatory light chain 11 (chicken) +namespace: protein +def: "A myosin regulatory light chain 11 that is encoded in the genome of chicken." [OMA:P02609, PRO:DNx] +comment: Category=organism-gene. +synonym: "chick-MYL11" EXACT PRO-short-label [PRO:DNx] +synonym: "DTNB (chicken)" RELATED [UniProtKB:P02609] +synonym: "fast skeletal myosin light chain 2 (chicken)" EXACT [UniProtKB:P02609] +synonym: "G2 (chicken)" RELATED [UniProtKB:P02609] +synonym: "LC2f (chicken)" EXACT [UniProtKB:P02609] +synonym: "MLC-2 (chicken)" RELATED [UniProtKB:P02609] +synonym: "MYL11" RELATED Gene-based [UniProtKB:P02609] +synonym: "MYLPF" RELATED Gene-based [UniProtKB:P02609] +synonym: "myosin light chain 11 (chicken)" EXACT [UniProtKB:P02609] +synonym: "myosin regulatory light chain 2, skeletal muscle isoform (chicken)" EXACT [UniProtKB:P02609] +synonym: "RLC" RELATED Gene-based [UniProtKB:P02609] +xref: UniProtKB:P02609 +is_a: PR:000010847 ! myosin regulatory light chain 11 +is_a: PR:000029063 ! Gallus gallus protein +intersection_of: PR:000010847 ! myosin regulatory light chain 11 +intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus +relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/776775 ! MYL11 (chicken) +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: PR:P02640 name: villin-1 (chicken) namespace: protein -def: "A villin-1 that is encoded in the genome of chicken." [PANTHER:PTHR11977\:SF15, PRO:DNx] +def: "A villin-1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-VIL1" EXACT PRO-short-label [PRO:DNx] synonym: "VIL" RELATED Gene-based [UniProtKB:P02640] @@ -144317,7 +144881,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P04354 name: calbindin (chicken) namespace: protein -def: "A calbindin that is encoded in the genome of chicken." [OMA:P04354, PANTHER:PTHR19972\:SF3, PRO:DNx] +def: "A calbindin that is encoded in the genome of chicken." [OMA:P04354, PRO:DNx] comment: Category=organism-gene. synonym: "CALB1" RELATED Gene-based [UniProtKB:P04354] synonym: "calbindin D28 (chicken)" EXACT [UniProtKB:P04354] @@ -144418,7 +144982,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P04625 name: thyroid hormone receptor alpha (chicken) namespace: protein -def: "A thyroid hormone receptor alpha that is encoded in the genome of chicken." [OMA:P04625, PANTHER:PTHR24082\:SF215, PRO:DNx] +def: "A thyroid hormone receptor alpha that is encoded in the genome of chicken." [OMA:P04625, PRO:DNx] comment: Category=organism-gene. synonym: "chick-THRA" EXACT PRO-short-label [PRO:DNx] synonym: "NR1A1" RELATED Gene-based [UniProtKB:P04625] @@ -145062,7 +145626,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P05153 name: phosphoenolpyruvate carboxykinase, cytosolic [GTP] (chicken) namespace: protein -def: "A phosphoenolpyruvate carboxykinase, cytosolic [GTP] that is encoded in the genome of chicken." [OMA:P05153, PANTHER:PTHR11561\:SF0, PRO:DNx] +def: "A phosphoenolpyruvate carboxykinase, cytosolic [GTP] that is encoded in the genome of chicken." [OMA:P05153, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PCK1" EXACT PRO-short-label [PRO:DNx] synonym: "PCK1" RELATED Gene-based [UniProtKB:P05153] @@ -145158,6 +145722,7 @@ comment: Category=organism-gene. Requested by=PubChem. synonym: "eIF-2-alpha (human)" EXACT [UniProtKB:P05198] synonym: "eIF-2A (human)" BROAD [UniProtKB:P05198] synonym: "eIF-2alpha (human)" EXACT [UniProtKB:P05198] +synonym: "eIF2-alpha (human)" EXACT [UniProtKB:P05198] synonym: "EIF2A" RELATED Gene-based [UniProtKB:P05198] synonym: "EIF2S1" RELATED Gene-based [UniProtKB:P05198] synonym: "eukaryotic translation initiation factor 2 subunit alpha (human)" EXACT [UniProtKB:P05198] @@ -145292,7 +145857,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P05300 name: lysosome-associated membrane glycoprotein 1 (chicken) namespace: protein -def: "A lysosome-associated membrane glycoprotein 1 that is encoded in the genome of chicken." [OMA:P05300, PANTHER:PTHR11506\:SF5, PRO:DNx] +def: "A lysosome-associated membrane glycoprotein 1 that is encoded in the genome of chicken." [PRO:WCB] comment: Category=organism-gene. synonym: "chick-LAMP1" EXACT PRO-short-label [PRO:DNx] synonym: "LAMP-1 (chicken)" EXACT [UniProtKB:P05300] @@ -145326,21 +145891,21 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P05387 -name: 60S acidic ribosomal protein P2 (human) +name: large ribosomal subunit protein P2 (human) namespace: protein -def: "A 60S acidic ribosomal protein P2 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P05387] +def: "A large ribosomal subunit protein P2 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P05387] comment: Category=organism-gene. +synonym: "60S acidic ribosomal protein P2 (human)" EXACT [UniProtKB:P05387] synonym: "D11S2243E" RELATED Gene-based [UniProtKB:P05387] synonym: "hRPLP2" EXACT PRO-short-label [PRO:DNx] -synonym: "large ribosomal subunit protein P2 (human)" EXACT [UniProtKB:P05387] synonym: "renal carcinoma antigen NY-REN-44 (human)" EXACT [UniProtKB:P05387] synonym: "RPLP2" RELATED Gene-based [UniProtKB:P05387] synonym: "RPP2" RELATED Gene-based [UniProtKB:P05387] xref: Reactome:R-HSA-72400 "PR:P05387 located_in GO:0005829" xref: UniProtKB:P05387 -is_a: PR:000014239 ! 60S acidic ribosomal protein P2 +is_a: PR:000014239 ! large ribosomal subunit protein P2 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000014239 ! 60S acidic ribosomal protein P2 +intersection_of: PR:000014239 ! large ribosomal subunit protein P2 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -145550,7 +146115,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P05625 name: RAF proto-oncogene serine/threonine-protein kinase (chicken) namespace: protein -def: "A RAF proto-oncogene serine/threonine-protein kinase that is encoded in the genome of chicken." [OMA:P05625, PANTHER:PTHR23257\:SF42, PRO:DNx] +def: "A RAF proto-oncogene serine/threonine-protein kinase that is encoded in the genome of chicken." [OMA:P05625, PRO:DNx] comment: Category=organism-gene. synonym: "C-MIL (chicken)" EXACT [UniProtKB:P05625] synonym: "C-RAF (chicken)" EXACT [UniProtKB:P05625] @@ -145682,7 +146247,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P06212 name: estrogen receptor (chicken) namespace: protein -def: "An estrogen receptor that is encoded in the genome of chicken." [PANTHER:PTHR24084\:SF217, PRO:DNx] +def: "An estrogen receptor that is encoded in the genome of chicken." [OMA:P06212, PRO:DNx] comment: Category=organism-gene. synonym: "chick-ESR1" EXACT PRO-short-label [PRO:DNx] synonym: "ER (chicken)" EXACT [UniProtKB:P06212] @@ -146036,6 +146601,9 @@ name: DNA polymerase beta (human) namespace: protein def: "A DNA polymerase beta that is encoded in the genome of human." [PRO:CNA] comment: Category=organism-gene. +synonym: "5'-deoxyribose-phosphate lyase (human)" EXACT [UniProtKB:P06746] +synonym: "5'-dRP lyase (human)" EXACT [UniProtKB:P06746] +synonym: "AP lyase (human)" EXACT [UniProtKB:P06746] synonym: "hPOLB" EXACT PRO-short-label [PRO:DNx] synonym: "POLB" RELATED Gene-based [UniProtKB:P06746] xref: UniProtKB:P06746 @@ -146059,6 +146627,7 @@ synonym: "nucleolar protein NO38 (human)" EXACT [UniProtKB:P06748] synonym: "numatrin (human)" EXACT [UniProtKB:P06748] xref: Reactome:R-HSA-3008211 "PR:P06748 located_in GO:0005829" xref: Reactome:R-HSA-606320 "PR:P06748 located_in GO:0005654" +xref: Reactome:R-HSA-9017702 "PR:P06748 located_in GO:0001652" xref: UniProtKB:P06748 is_a: PR:000011370 ! nucleophosmin is_a: PR:000029067 ! Homo sapiens protein @@ -146299,7 +146868,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P07031 name: acylphosphatase-2 (chicken) namespace: protein -def: "An acylphosphatase-2 that is encoded in the genome of chicken." [OMA:P07031, PANTHER:PTHR10029\:SF1, PRO:DNx] +def: "An acylphosphatase-2 that is encoded in the genome of chicken." [OMA:P07031, PRO:DNx] comment: Category=organism-gene. synonym: "acylphosphatase isozyme CH1 (chicken)" EXACT [UniProtKB:P07031] synonym: "acylphosphatase, muscle type isozyme (chicken)" EXACT [UniProtKB:P07031] @@ -146318,7 +146887,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P07032 name: acylphosphatase-1 (chicken) namespace: protein -def: "An acylphosphatase-1 that is encoded in the genome of chicken." [OMA:P07032, PANTHER:PTHR10029\:SF2, PRO:DNx] +def: "An acylphosphatase-1 that is encoded in the genome of chicken." [OMA:P07032, PRO:DNx] comment: Category=organism-gene. synonym: "acylphosphatase isozyme CH2 (chicken)" EXACT [UniProtKB:P07032] synonym: "acylphosphatase, organ-common type isozyme (chicken)" EXACT [UniProtKB:P07032] @@ -146337,7 +146906,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P07090 name: calretinin (chicken) namespace: protein -def: "A calretinin that is encoded in the genome of chicken." [PANTHER:PTHR19972\:SF4, PRO:DNx] +def: "A calretinin that is encoded in the genome of chicken." [OMA:P07090, PRO:DNx] comment: Category=organism-gene. synonym: "CALB2" RELATED Gene-based [UniProtKB:P07090] synonym: "chick-CALB2" EXACT PRO-short-label [PRO:DNx] @@ -146397,6 +146966,8 @@ synonym: "Csf1" RELATED Gene-based [UniProtKB:P07141] synonym: "Csfm" RELATED Gene-based [UniProtKB:P07141] synonym: "MCSF (mouse)" EXACT [UniProtKB:P07141] synonym: "mCSF1" EXACT PRO-short-label [PRO:DNx] +synonym: "PG-M-CSF (mouse)" EXACT [UniProtKB:P07141] +synonym: "proteoglycan macrophage colony-stimulating factor (mouse)" EXACT [UniProtKB:P07141] xref: UniProtKB:P07141 is_a: PR:000005930 ! macrophage colony-stimulating factor 1 is_a: PR:000029032 ! Mus musculus protein @@ -146803,7 +147374,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P07530 name: beta-crystallin B1 (chicken) namespace: protein -def: "A beta-crystallin B1 that is encoded in the genome of chicken." [OMA:P07530, PANTHER:PTHR11818\:SF12, PRO:DNx] +def: "A beta-crystallin B1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "beta-35 (chicken)" EXACT [UniProtKB:P07530] synonym: "beta-B1 crystallin (chicken)" EXACT [UniProtKB:P07530] @@ -147452,6 +148023,8 @@ synonym: "gp80-LNGFR (human)" EXACT [UniProtKB:P08138] synonym: "hNGFR" EXACT PRO-short-label [PRO:DNx] synonym: "low affinity neurotrophin receptor p75NTR (human)" EXACT [UniProtKB:P08138] synonym: "low-affinity nerve growth factor receptor (human)" EXACT [UniProtKB:P08138] +synonym: "low-affinity nerve growth factor receptor p75NGFR (human)" EXACT [UniProtKB:P08138] +synonym: "low-affinity nerve growth factor receptor p75NGR (human)" EXACT [UniProtKB:P08138] synonym: "NGF receptor (human)" EXACT [UniProtKB:P08138] synonym: "NGFR" RELATED Gene-based [UniProtKB:P08138] synonym: "p75 ICD (human)" EXACT [UniProtKB:P08138] @@ -147724,7 +148297,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P08267 name: ferritin heavy chain (chicken) namespace: protein -def: "A ferritin heavy chain that is encoded in the genome of chicken." [OMA:P08267, PANTHER:PTHR11431\:SF14, PRO:DNx] +def: "A ferritin heavy chain that is encoded in the genome of chicken." [OMA:P08267, PRO:DNx] comment: Category=organism-gene. synonym: "chick-FTH1" EXACT PRO-short-label [PRO:DNx] synonym: "ferritin H subunit (chicken)" EXACT [UniProtKB:P08267] @@ -147759,7 +148332,9 @@ name: all-trans-retinol dehydrogenase [NAD(+)] ADH4 (human) namespace: protein def: "An all-trans-retinol dehydrogenase [NAD(+)] ADH4 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P08319] comment: Category=organism-gene. +synonym: "ADH2" RELATED Gene-based [UniProtKB:P08319] synonym: "ADH4" RELATED Gene-based [UniProtKB:P08319] +synonym: "alcohol dehydrogenase 2 (human)" EXACT [UniProtKB:P08319] synonym: "alcohol dehydrogenase 4 (human)" EXACT [UniProtKB:P08319] synonym: "alcohol dehydrogenase class II pi chain (human)" EXACT [UniProtKB:P08319] synonym: "hADH4" EXACT PRO-short-label [PRO:DNx] @@ -148179,7 +148754,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P08629 name: thioredoxin (chicken) namespace: protein -def: "A thioredoxin that is encoded in the genome of chicken." [OMA:P08629, PANTHER:PTHR10438\:SF18, PRO:DNx] +def: "A thioredoxin that is encoded in the genome of chicken." [OMA:P08629, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TXN" EXACT PRO-short-label [PRO:DNx] synonym: "Trx (chicken)" EXACT [UniProtKB:P08629] @@ -149215,6 +149790,23 @@ intersection_of: PR:000000217 ! activin/inhibin beta B chain intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: PR:P09540 +name: myosin light chain, embryonic (chicken) +namespace: protein +def: "A myosin light chain 4 that is encoded in the genome of chicken." [OMA:P09540, PRO:DNx] +comment: Category=organism-gene. +synonym: "chick-MYL4" EXACT PRO-short-label [PRO:DNx] +synonym: "L23 (chicken)" EXACT [UniProtKB:P09540] +synonym: "MYL4" RELATED Gene-based [UniProtKB:P09540] +xref: UniProtKB:P09540 +is_a: PR:000010836 ! myosin light chain 4 +is_a: PR:000029063 ! Gallus gallus protein +intersection_of: PR:000010836 ! myosin light chain 4 +intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus +relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=49822 ! MYL4 (chicken) +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: PR:P09541 name: myosin light chain 4 (mouse) @@ -149348,6 +149940,8 @@ synonym: "hCSF1" EXACT PRO-short-label [PRO:DNx] synonym: "lanimostim (human)" EXACT [UniProtKB:P09603] synonym: "M-CSF (human)" EXACT [UniProtKB:P09603] synonym: "MCSF (human)" EXACT [UniProtKB:P09603] +synonym: "PG-M-CSF (human)" EXACT [UniProtKB:P09603] +synonym: "proteoglycan macrophage colony-stimulating factor (human)" EXACT [UniProtKB:P09603] xref: UniProtKB:P09603 is_a: PR:000005930 ! macrophage colony-stimulating factor 1 is_a: PR:000029067 ! Homo sapiens protein @@ -149414,6 +150008,7 @@ synonym: "hnRNP core protein A1 (human)" EXACT [UniProtKB:P09651] synonym: "HNRNPA1" RELATED Gene-based [UniProtKB:P09651] synonym: "HNRPA1" RELATED Gene-based [UniProtKB:P09651] synonym: "single-strand RNA-binding protein (human)" EXACT [UniProtKB:P09651] +xref: Reactome:R-HSA-9727902 "PR:P09651 located_in GO:0005829" xref: UniProtKB:P09651 is_a: PR:000008658 ! heterogeneous nuclear ribonucleoprotein A1 is_a: PR:000029067 ! Homo sapiens protein @@ -150121,6 +150716,7 @@ namespace: protein def: "A chromosome transmission fidelity protein 8 homolog that is encoded in the genome of human." [PRO:DAN] comment: Category=organism-gene. synonym: "hCHTF8" EXACT PRO-short-label [PRO:DNx] +xref: Reactome:R-HSA-9668898 "PR:P0CG13 located_in GO:0005654" xref: UniProtKB:P0CG13 is_a: PR:000029067 ! Homo sapiens protein is_a: PR:000030060 ! chromosome transmission fidelity protein 8 homolog @@ -150400,7 +150996,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P0DMQ6 name: sorbitol dehydrogenase (chicken) namespace: protein -def: "A sorbitol dehydrogenase that is encoded in the genome of chicken." [OMA:P0DMQ6, PRO:DNx] +def: "A sorbitol dehydrogenase that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-SORD" EXACT PRO-short-label [PRO:DNx] synonym: "polyol dehydrogenase (chicken)" EXACT [UniProtKB:P0DMQ6] @@ -150765,7 +151361,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P10157 name: protein C-ets-2 (chicken) namespace: protein -def: "A protein C-ets-2 that is encoded in the genome of chicken." [OMA:P10157, PANTHER:PTHR11849\:SF47, PRO:DNx] +def: "A protein C-ets-2 that is encoded in the genome of chicken." [OMA:P10157, PRO:DNx] comment: Category=organism-gene. synonym: "chick-ETS2" EXACT PRO-short-label [PRO:DNx] synonym: "ETS2" RELATED Gene-based [UniProtKB:P10157] @@ -150876,7 +151472,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P10360 name: cellular tumor antigen p53 (chicken) namespace: protein -def: "A cellular tumor antigen p53 that is encoded in the genome of chicken." [PANTHER:PTHR11447\:SF6, PRO:DNx] +def: "A cellular tumor antigen p53 that is encoded in the genome of chicken." [OMA:P10360, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TP53" EXACT PRO-short-label [PRO:DNx] synonym: "TP53" RELATED Gene-based [UniProtKB:P10360] @@ -151030,18 +151626,16 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P10601 -name: pancreatic prohormone (mouse) +name: pancreatic polypeptide prohormone (mouse) namespace: protein -def: "A pancreatic prohormone that is encoded in the genome of mouse." [OMA:P10601, PRO:DNx] +def: "A pancreatic polypeptide prohormone that is encoded in the genome of mouse." [OMA:P10601, PRO:DNx] comment: Category=organism-gene. synonym: "mPPY" EXACT PRO-short-label [PRO:DNx] -synonym: "pancreatic polypeptide (mouse)" EXACT [UniProtKB:P10601] -synonym: "PP (mouse)" EXACT [UniProtKB:P10601] synonym: "Ppy" RELATED Gene-based [UniProtKB:P10601] xref: UniProtKB:P10601 -is_a: PR:000013164 ! pancreatic prohormone +is_a: PR:000013164 ! pancreatic polypeptide prohormone is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000013164 ! pancreatic prohormone +intersection_of: PR:000013164 ! pancreatic polypeptide prohormone intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:97753 ! Ppy (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -151801,6 +152395,8 @@ synonym: "52 kDa mitochondrial autoantigen of primary biliary cirrhosis (human)" synonym: "BCATE2" RELATED Gene-based [UniProtKB:P11182] synonym: "BCKAD-E2 (human)" EXACT [UniProtKB:P11182] synonym: "BCKADE2 (human)" EXACT [UniProtKB:P11182] +synonym: "BCKDH-E2 (human)" EXACT [UniProtKB:P11182] +synonym: "BCKDHE2" RELATED Gene-based [UniProtKB:P11182] synonym: "BCOADC-E2 (human)" EXACT [UniProtKB:P11182] synonym: "branched chain 2-oxo-acid dehydrogenase complex component E2 (human)" EXACT [UniProtKB:P11182] synonym: "branched-chain alpha-keto acid dehydrogenase complex component E2 (human)" EXACT [UniProtKB:P11182] @@ -151820,7 +152416,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P11183 name: glycine cleavage system H protein, mitochondrial (chicken) namespace: protein -def: "A glycine cleavage system H protein, mitochondrial that is encoded in the genome of chicken." [OMA:P11183, PANTHER:PTHR11715\:SF0, PRO:DNx] +def: "A glycine cleavage system H protein, mitochondrial that is encoded in the genome of chicken." [OMA:P11183, PRO:DNx] comment: Category=organism-gene. synonym: "chick-GCSH" EXACT PRO-short-label [PRO:DNx] synonym: "GCSH" RELATED Gene-based [UniProtKB:P11183] @@ -152292,7 +152888,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P11602 name: lipoprotein lipase (chicken) namespace: protein -def: "A lipoprotein lipase that is encoded in the genome of chicken." [OMA:P11602, PRO:DNx] +def: "A lipoprotein lipase that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-LPL" EXACT PRO-short-label [PRO:DNx] synonym: "LPL" RELATED Gene-based [UniProtKB:P11602] @@ -152435,7 +153031,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P11722 name: fibronectin (chicken) namespace: protein -def: "A fibronectin that is encoded in the genome of chicken." [PRO:DNx] +def: "A fibronectin that is encoded in the genome of chicken." [OMA:P11722, PRO:DNx] comment: Category=organism-gene. synonym: "chick-FN1" EXACT PRO-short-label [PRO:DNx] synonym: "FN (chicken)" EXACT [UniProtKB:P11722] @@ -153364,7 +153960,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P12813 name: nuclear receptor subfamily 4 group A member 1 (mouse) namespace: protein -def: "A nuclear receptor subfamily 4 group A member 1 that is encoded in the genome of mouse." [OMA:P12813, PRO:DNx] +def: "A nuclear receptor subfamily 4 immunity group A member 1 that is encoded in the genome of mouse." [OMA:P12813, PRO:DNx] comment: Category=organism-gene. synonym: "Gfrp" RELATED Gene-based [UniProtKB:P12813] synonym: "Hmr" RELATED Gene-based [UniProtKB:P12813] @@ -153376,9 +153972,9 @@ synonym: "nuclear protein N10 (mouse)" EXACT [UniProtKB:P12813] synonym: "Nur77" RELATED Gene-based [UniProtKB:P12813] synonym: "orphan nuclear receptor HMR (mouse)" EXACT [UniProtKB:P12813] xref: UniProtKB:P12813 -is_a: PR:000011408 ! nuclear receptor subfamily 4 group A member 1 +is_a: PR:000011408 ! nuclear receptor subfamily 4 immunity group A member 1 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000011408 ! nuclear receptor subfamily 4 group A member 1 +intersection_of: PR:000011408 ! nuclear receptor subfamily 4 immunity group A member 1 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1352454 ! Nr4a1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -153544,7 +154140,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P12957 name: caldesmon (chicken) namespace: protein -def: "A caldesmon that is encoded in the genome of chicken." [OMA:P12957, PANTHER:PTHR18949\:SF0, PRO:DNx] +def: "A caldesmon that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "CAD" RELATED Gene-based [UniProtKB:P12957] synonym: "CALD1" RELATED Gene-based [UniProtKB:P12957] @@ -153610,6 +154206,7 @@ synonym: "UDG (human)" EXACT [UniProtKB:P13051] synonym: "UNG" RELATED Gene-based [UniProtKB:P13051] synonym: "UNG1" RELATED Gene-based [UniProtKB:P13051] synonym: "UNG15" RELATED Gene-based [UniProtKB:P13051] +xref: Reactome:R-HSA-9817526 "PR:P13051 located_in GO:0005654" xref: UniProtKB:P13051 is_a: PR:000017104 ! uracil-DNA glycosylase is_a: PR:000029067 ! Homo sapiens protein @@ -153725,20 +154322,23 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P13385 -name: teratocarcinoma-derived growth factor 1 (human) +name: protein Cripto (human) namespace: protein -def: "A teratocarcinoma-derived growth factor 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P13385] +def: "A protein Cripto that is encoded in the genome of human." [PRO:DNx, UniProtKB:P13385] comment: Category=organism-gene. synonym: "CRGF (human)" EXACT [UniProtKB:P13385] synonym: "CRIPTO" RELATED Gene-based [UniProtKB:P13385] +synonym: "cripto, EGF-CFC family member (human)" EXACT [UniProtKB:P13385] +synonym: "CRIPTO-1" RELATED Gene-based [UniProtKB:P13385] synonym: "cripto-1 growth factor (human)" EXACT [UniProtKB:P13385] synonym: "epidermal growth factor-like cripto protein CR1 (human)" EXACT [UniProtKB:P13385] -synonym: "hTDGF1" EXACT PRO-short-label [PRO:DNx] +synonym: "hCRIPTO" EXACT PRO-short-label [PRO:DNx] synonym: "TDGF1" RELATED Gene-based [UniProtKB:P13385] +synonym: "teratocarcinoma-derived growth factor 1 (human)" EXACT [UniProtKB:P13385] xref: UniProtKB:P13385 is_a: PR:000029067 ! Homo sapiens protein -is_a: PR:000030513 ! teratocarcinoma-derived growth factor 1 -intersection_of: PR:000030513 ! teratocarcinoma-derived growth factor 1 +is_a: PR:000030513 ! protein Cripto +intersection_of: PR:000030513 ! protein Cripto intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -154088,7 +154688,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P13731 name: serpin H1 (chicken) namespace: protein -def: "A serpin H1 that is encoded in the genome of chicken." [OMA:P13731, PANTHER:PTHR11461\:SF27, PRO:DNx] +def: "A serpin H1 that is encoded in the genome of chicken." [OMA:P13731, PRO:DNx] comment: Category=organism-gene. synonym: "47 kDa heat shock protein (chicken)" EXACT [UniProtKB:P13731] synonym: "chick-SERPINH1" EXACT PRO-short-label [PRO:DNx] @@ -154199,7 +154799,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P13854 name: myelomonocytic growth factor (chicken) namespace: protein -def: "A granulocyte colony-stimulating factor that is encoded in the genome of chicken." [OMA:P13854, PANTHER:PTHR10511\:SF2, PRO:DNx] +def: "A granulocyte colony-stimulating factor that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-CSF3" EXACT PRO-short-label [PRO:DNx] synonym: "CSF3" RELATED Gene-based [UniProtKB:P13854] @@ -154550,7 +155150,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P14315 name: F-actin-capping protein subunit beta isoforms 1 and 2 (chicken) namespace: protein -def: "An F-actin-capping protein subunit beta that is encoded in the genome of chicken." [OMA:P14315, PANTHER:PTHR10619\:SF0, PRO:DNx] +def: "An F-actin-capping protein subunit beta that is encoded in the genome of chicken." [OMA:P14315, PRO:DNx] comment: Category=organism-gene. synonym: "beta-actinin subunit II (chicken)" EXACT [UniProtKB:P14315] synonym: "CapZ 36/32 (chicken)" RELATED [UniProtKB:P14315] @@ -154635,7 +155235,6 @@ synonym: "hTRIM27" EXACT PRO-short-label [PRO:DNx] synonym: "ret finger protein (human)" EXACT [UniProtKB:P14373] synonym: "RFP" RELATED Gene-based [UniProtKB:P14373] synonym: "RING finger protein 76 (human)" EXACT [UniProtKB:P14373] -synonym: "RING-type E3 ubiquitin transferase TRIM27 (human)" EXACT [UniProtKB:P14373] synonym: "RNF76" RELATED Gene-based [UniProtKB:P14373] synonym: "TRIM27" RELATED Gene-based [UniProtKB:P14373] synonym: "tripartite motif-containing protein 27 (human)" EXACT [UniProtKB:P14373] @@ -154871,7 +155470,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P14676 name: prolactin (chicken) namespace: protein -def: "A prolactin that is encoded in the genome of chicken." [OMA:P14676, PANTHER:PTHR11417\:SF4, PRO:DNx] +def: "A prolactin that is encoded in the genome of chicken." [OMA:P14676, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PRL" EXACT PRO-short-label [PRO:DNx] synonym: "PRL" RELATED Gene-based [UniProtKB:P14676] @@ -154950,7 +155549,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P14791 name: heme oxygenase 1 (chicken) namespace: protein -def: "A heme oxygenase 1 that is encoded in the genome of chicken." [PANTHER:PTHR10720\:SF1, PRO:DNx] +def: "A heme oxygenase 1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-HMOX1" EXACT PRO-short-label [PRO:DNx] synonym: "HMOX1" RELATED Gene-based [UniProtKB:P14791] @@ -155096,6 +155695,7 @@ synonym: "desmoplakin-3 (human)" EXACT [UniProtKB:P14923] synonym: "DP3" RELATED Gene-based [UniProtKB:P14923] synonym: "hJUP" EXACT PRO-short-label [PRO:DNx] synonym: "JUP" RELATED Gene-based [UniProtKB:P14923] +xref: Reactome:R-HSA-201598 "PR:P14923 located_in GO:0005829" xref: Reactome:R-HSA-437260 "PR:P14923 located_in GO:0005886" xref: Reactome:R-HSA-6799534 "PR:P14923 located_in GO:0035580" xref: Reactome:R-HSA-6801028 "PR:P14923 located_in GO:1904813" @@ -155319,7 +155919,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P15143 name: POU domain, class 2, transcription factor 1 (chicken) namespace: protein -def: "A POU domain, class 2, transcription factor 1 that is encoded in the genome of chicken." [PRO:DNx] +def: "A POU domain, class 2, transcription factor 1 that is encoded in the genome of chicken." [OMA:P15143, PRO:DNx] comment: Category=organism-gene. synonym: "chick-POU2F1" EXACT PRO-short-label [PRO:DNx] synonym: "NF-A1 (chicken)" EXACT [UniProtKB:P15143] @@ -155737,6 +156337,7 @@ comment: Category=organism-gene. synonym: "hHTN1" EXACT PRO-short-label [PRO:DNx] synonym: "HIS1" RELATED Gene-based [UniProtKB:P15515] synonym: "histidine-rich protein 1 (human)" EXACT [UniProtKB:P15515] +synonym: "Hst1" EXACT [UniProtKB:P15515] synonym: "HTN1" RELATED Gene-based [UniProtKB:P15515] synonym: "post-PB protein (human)" EXACT [UniProtKB:P15515] synonym: "PPB (human)" EXACT [UniProtKB:P15515] @@ -155756,8 +156357,10 @@ comment: Category=organism-gene. synonym: "basic histidine-rich protein (human)" EXACT [UniProtKB:P15516] synonym: "hHTN3" EXACT PRO-short-label [PRO:DNx] synonym: "HIS2" RELATED Gene-based [UniProtKB:P15516] +synonym: "histatin 3 (human)" EXACT [UniProtKB:P15516] synonym: "histidine-rich protein 3 (human)" EXACT [UniProtKB:P15516] synonym: "Hst (human)" EXACT [PRO:DAN, UniProtKB:P15516] +synonym: "Hst 3" EXACT [UniProtKB:P15516] synonym: "HTN3" RELATED Gene-based [UniProtKB:P15516] synonym: "PB (human)" EXACT [UniProtKB:P15516] xref: UniProtKB:P15516 @@ -155905,20 +156508,20 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P15692 -name: vascular endothelial growth factor A (human) +name: vascular endothelial growth factor A, long form (human) namespace: protein -def: "A vascular endothelial growth factor A that is encoded in the genome of human." [PRO:DNx, UniProtKB:P15692] +def: "A vascular endothelial growth factor A, long form that is encoded in the genome of human." [PRO:DNx, UniProtKB:P15692] comment: Category=organism-gene. synonym: "hVEGFA" EXACT PRO-short-label [PRO:DNx] +synonym: "L-VEGF (human)" EXACT [UniProtKB:P15692] synonym: "vascular permeability factor (human)" EXACT [UniProtKB:P15692] synonym: "VEGF" RELATED Gene-based [UniProtKB:P15692] -synonym: "VEGF-A (human)" EXACT [UniProtKB:P15692] synonym: "VEGFA" RELATED Gene-based [UniProtKB:P15692] synonym: "VPF (human)" EXACT [UniProtKB:P15692] xref: UniProtKB:P15692 -is_a: PR:000017284 ! vascular endothelial growth factor A +is_a: PR:000017284 ! vascular endothelial growth factor A, long form is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000017284 ! vascular endothelial growth factor A +intersection_of: PR:000017284 ! vascular endothelial growth factor A, long form intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -155948,7 +156551,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P15720 name: myelin basic protein (chicken) namespace: protein -def: "A myelin basic protein that is encoded in the genome of chicken." [PANTHER:PTHR11429\:SF0, PRO:DNx] +def: "A myelin basic protein that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-MBP" EXACT PRO-short-label [PRO:DNx] synonym: "MBP" RELATED Gene-based [UniProtKB:P15720] @@ -155964,7 +156567,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P15743 name: parathyroid hormone (chicken) namespace: protein -def: "A parathyroid hormone that is encoded in the genome of chicken." [OMA:P15743, PANTHER:PTHR10541\:SF2, PRO:DNx] +def: "A parathyroid hormone that is encoded in the genome of chicken." [OMA:P15743, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PTH" EXACT PRO-short-label [PRO:DNx] synonym: "PTH" RELATED Gene-based [UniProtKB:P15743] @@ -155980,7 +156583,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P15771 name: nucleolin (chicken) namespace: protein -def: "A nucleolin that is encoded in the genome of chicken." [PANTHER:PTHR24012\:SF62, PRO:DNx] +def: "A nucleolin that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-NCL" EXACT PRO-short-label [PRO:DNx] synonym: "NCL" RELATED Gene-based [UniProtKB:P15771] @@ -156207,7 +156810,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P15988 name: collagen alpha-2(VI) chain (chicken) namespace: protein -def: "A collagen alpha-2(VI) chain that is encoded in the genome of chicken." [OMA:P15988, PANTHER:PTHR24023\:SF67, PRO:DNx] +def: "A collagen alpha-2(VI) chain that is encoded in the genome of chicken." [OMA:P15988, PRO:DNx] comment: Category=organism-gene. synonym: "chick-COL6A2" EXACT PRO-short-label [PRO:DNx] synonym: "COL6A2" RELATED Gene-based [UniProtKB:P15988] @@ -156787,6 +157390,24 @@ intersection_of: PR:000001852 ! cytotoxic T-lymphocyte protein 4 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: PR:P16419 +name: myosin-binding protein C, fast-type (chicken) +namespace: protein +def: "A myosin-binding protein C, fast-type that is encoded in the genome of chicken." [OMA:P16419, PRO:DNx] +comment: Category=organism-gene. +synonym: "C-protein, skeletal muscle fast isoform (chicken)" EXACT [UniProtKB:P16419] +synonym: "chick-MYBPC2" EXACT PRO-short-label [PRO:DNx] +synonym: "fast MyBP-C (chicken)" EXACT [UniProtKB:P16419] +synonym: "MYBPC2" RELATED Gene-based [UniProtKB:P16419] +xref: UniProtKB:P16419 +is_a: PR:000010804 ! myosin-binding protein C, fast-type +is_a: PR:000029063 ! Gallus gallus protein +intersection_of: PR:000010804 ! myosin-binding protein C, fast-type +intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus +relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/425457 ! MYBPC2 (chicken) +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: PR:P16442 name: histo-blood group ABO system transferase (human) @@ -156957,7 +157578,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P16580 name: glutamine synthetase (chicken) namespace: protein -def: "A glutamine synthetase that is encoded in the genome of chicken." [PANTHER:PTHR20852\:SF14, PRO:DNx] +def: "A glutamine synthetase that is encoded in the genome of chicken." [OMA:P16580, PRO:DNx] comment: Category=organism-gene. synonym: "chick-GLUL" EXACT PRO-short-label [PRO:DNx] synonym: "GLNS" RELATED Gene-based [UniProtKB:P16580] @@ -158289,6 +158910,7 @@ synonym: "GPX2" RELATED Gene-based [UniProtKB:P18283] synonym: "GSHPx-2 (human)" EXACT [UniProtKB:P18283] synonym: "GSHPx-GI (human)" EXACT [UniProtKB:P18283] synonym: "hGPX2" EXACT PRO-short-label [PRO:DNx] +synonym: "phospholipid hydroperoxide glutathione peroxidase GPX2 (human)" EXACT [UniProtKB:P18283] xref: Reactome:R-HSA-2142687 "PR:P18283 located_in GO:0005829" xref: UniProtKB:P18283 is_a: PR:000008211 ! glutathione peroxidase 2 @@ -158457,6 +159079,8 @@ synonym: "chick-NGFR" EXACT PRO-short-label [PRO:DNx] synonym: "gp80-LNGFR (chicken)" EXACT [UniProtKB:P18519] synonym: "low affinity neurotrophin receptor p75NTR (chicken)" EXACT [UniProtKB:P18519] synonym: "low-affinity nerve growth factor receptor (chicken)" EXACT [UniProtKB:P18519] +synonym: "low-affinity nerve growth factor receptor p75NGFR (chicken)" EXACT [UniProtKB:P18519] +synonym: "low-affinity nerve growth factor receptor p75NGR (chicken)" EXACT [UniProtKB:P18519] synonym: "NGF receptor (chicken)" EXACT [UniProtKB:P18519] synonym: "NGFR" RELATED Gene-based [UniProtKB:P18519] synonym: "p75 ICD (chicken)" EXACT [UniProtKB:P18519] @@ -158507,7 +159131,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P18625 name: Fos-related antigen 2 (chicken) namespace: protein -def: "A Fos-related antigen 2 that is encoded in the genome of chicken." [OMA:P18625, PANTHER:PTHR23351\:SF6, PRO:DNx] +def: "A Fos-related antigen 2 that is encoded in the genome of chicken." [OMA:P18625, PRO:DNx] comment: Category=organism-gene. synonym: "chick-FOSL2" EXACT PRO-short-label [PRO:DNx] synonym: "FOSL2" RELATED Gene-based [UniProtKB:P18625] @@ -158932,7 +159556,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P19204 name: calsequestrin-2 (chicken) namespace: protein -def: "A calsequestrin-2 that is encoded in the genome of chicken." [OMA:P19204, PANTHER:PTHR10033\:SF2, PRO:DNx] +def: "A calsequestrin-2 that is encoded in the genome of chicken." [OMA:P19204, PRO:DNx] comment: Category=organism-gene. synonym: "CASQ2" RELATED Gene-based [UniProtKB:P19204] synonym: "chick-CASQ2" EXACT PRO-short-label [PRO:DNx] @@ -159092,7 +159716,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P19336 name: CCN family member 1 (chicken) namespace: protein -def: "A CCN family member 1 that is encoded in the genome of chicken." [OMA:P19336, PANTHER:PTHR11348\:SF6, PRO:DNx] +def: "A CCN family member 1 that is encoded in the genome of chicken." [OMA:P19336, PRO:DNx] comment: Category=organism-gene. synonym: "CCN1" RELATED Gene-based [UniProtKB:P19336] synonym: "cellular communication network factor 1 (chicken)" EXACT [UniProtKB:P19336] @@ -159318,7 +159942,6 @@ synonym: "52 kDa ribonucleoprotein autoantigen Ro/SS-A (human)" EXACT [UniProtKB synonym: "52 kDa Ro protein (human)" EXACT [UniProtKB:P19474] synonym: "hTRIM21" EXACT PRO-short-label [PRO:DNx] synonym: "RING finger protein 81 (human)" EXACT [UniProtKB:P19474] -synonym: "RING-type E3 ubiquitin transferase TRIM21 (human)" EXACT [UniProtKB:P19474] synonym: "RNF81" RELATED Gene-based [UniProtKB:P19474] synonym: "Ro(SS-A) (human)" EXACT [UniProtKB:P19474] synonym: "RO52" RELATED Gene-based [UniProtKB:P19474] @@ -159356,7 +159979,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P19596 name: fibroblast growth factor 1 (chicken) namespace: protein -def: "A fibroblast growth factor 1 that is encoded in the genome of chicken." [OMA:P19596, PANTHER:PTHR11486\:SF14, PRO:DNx] +def: "A fibroblast growth factor 1 that is encoded in the genome of chicken." [OMA:P19596, PRO:DNx] comment: Category=organism-gene. synonym: "acidic fibroblast growth factor (chicken)" EXACT [UniProtKB:P19596] synonym: "aFGF (chicken)" EXACT [UniProtKB:P19596] @@ -159789,7 +160412,7 @@ name: eukaryotic translation initiation factor 2 subunit 2 (human) namespace: protein def: "A eukaryotic translation initiation factor 2 subunit 2 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P20042] comment: Category=organism-gene. -synonym: "eIF-2-beta (human)" EXACT [UniProtKB:P20042] +synonym: "eIF2-beta (human)" EXACT [UniProtKB:P20042] synonym: "EIF2B" RELATED Gene-based [UniProtKB:P20042] synonym: "EIF2S2" RELATED Gene-based [UniProtKB:P20042] synonym: "eukaryotic translation initiation factor 2 subunit beta (human)" EXACT [UniProtKB:P20042] @@ -160526,7 +161149,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P20785 name: collagen alpha-1(VI) chain (chicken) namespace: protein -def: "A collagen alpha-1(VI) chain that is encoded in the genome of chicken." [PANTHER:PTHR24023\:SF68, PRO:DNx] +def: "A collagen alpha-1(VI) chain that is encoded in the genome of chicken." [OMA:P20785, PRO:DNx] comment: Category=organism-gene. synonym: "chick-COL6A1" EXACT PRO-short-label [PRO:DNx] synonym: "COL6A1" RELATED Gene-based [UniProtKB:P20785] @@ -161211,7 +161834,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P21642 name: phosphoenolpyruvate carboxykinase [GTP], mitochondrial (chicken) namespace: protein -def: "A phosphoenolpyruvate carboxykinase [GTP], mitochondrial that is encoded in the genome of chicken." [PANTHER:PTHR11561\:SF0, PRO:DNx] +def: "A phosphoenolpyruvate carboxykinase [GTP], mitochondrial that is encoded in the genome of chicken." [OMA:P21642, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PCK2" EXACT PRO-short-label [PRO:DNx] synonym: "PCK2" RELATED Gene-based [UniProtKB:P21642] @@ -161481,7 +162104,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P21804 name: fibroblast growth factor receptor 1 (chicken) namespace: protein -def: "A fibroblast growth factor receptor 1 that is encoded in the genome of chicken." [OMA:P21804, PRO:DNx] +def: "A fibroblast growth factor receptor 1 that is encoded in the genome of chicken." [PRO:CNA] comment: Category=organism-gene. synonym: "basic fibroblast growth factor receptor 1 (chicken)" EXACT [UniProtKB:P21804] synonym: "bFGF-R-1 (chicken)" EXACT [UniProtKB:P21804] @@ -162070,16 +162693,17 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P22451 -name: 60S ribosomal protein L5 (chicken) +name: large ribosomal subunit protein uL18 (chicken) namespace: protein -def: "A 60S ribosomal protein L5 that is encoded in the genome of chicken." [OMA:P22451, PANTHER:PTHR23410\:SF3, PRO:DNx] +def: "A eukaryotic-type large ribosomal subunit protein uL18 that is encoded in the genome of chicken." [OMA:P22451, PRO:DNx] comment: Category=organism-gene. +synonym: "60S ribosomal protein L5 (chicken)" EXACT [UniProtKB:P22451] synonym: "chick-RPL5" EXACT PRO-short-label [PRO:DNx] synonym: "RPL5" RELATED Gene-based [UniProtKB:P22451] xref: UniProtKB:P22451 -is_a: PR:000014230 ! 60S ribosomal protein L5 +is_a: PR:000014230 ! eukaryotic-type large ribosomal subunit protein uL18 is_a: PR:000029063 ! Gallus gallus protein -intersection_of: PR:000014230 ! 60S ribosomal protein L5 +intersection_of: PR:000014230 ! eukaryotic-type large ribosomal subunit protein uL18 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/395269 ! RPL5 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus @@ -162284,9 +162908,9 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P22736 -name: nuclear receptor subfamily 4 group A member 1 (human) +name: nuclear receptor subfamily 4 immunity group A member 1 (human) namespace: protein -def: "A nuclear receptor subfamily 4 group A member 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P22736] +def: "A nuclear receptor subfamily 4 immunity group A member 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P22736] comment: Category=organism-gene. synonym: "early response protein NAK1 (human)" EXACT [UniProtKB:P22736] synonym: "GFRP1" RELATED Gene-based [UniProtKB:P22736] @@ -162303,9 +162927,9 @@ synonym: "testicular receptor 3 (human)" EXACT [UniProtKB:P22736] xref: DTO:00117520 xref: Reactome:R-HSA-199831 "PR:P22736 located_in GO:0005654" xref: UniProtKB:P22736 -is_a: PR:000011408 ! nuclear receptor subfamily 4 group A member 1 +is_a: PR:000011408 ! nuclear receptor subfamily 4 immunity group A member 1 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000011408 ! nuclear receptor subfamily 4 group A member 1 +intersection_of: PR:000011408 ! nuclear receptor subfamily 4 immunity group A member 1 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -162613,7 +163237,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P23228 name: hydroxymethylglutaryl-CoA synthase, cytoplasmic (chicken) namespace: protein -def: "A hydroxymethylglutaryl-CoA synthase, cytoplasmic that is encoded in the genome of chicken." [PANTHER:PTHR11877\:SF10, PRO:DNx] +def: "A hydroxymethylglutaryl-CoA synthase, cytoplasmic that is encoded in the genome of chicken." [OMA:P23228, PRO:DNx] comment: Category=organism-gene. synonym: "3-hydroxy-3-methylglutaryl coenzyme A synthase (chicken)" EXACT [UniProtKB:P23228] synonym: "chick-HMGCS1" EXACT PRO-short-label [PRO:DNx] @@ -163023,7 +163647,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P23614 name: brain acid soluble protein 1 homolog (chicken) namespace: protein -def: "A brain acid soluble protein 1 that is encoded in the genome of chicken." [OMA:P23614, PANTHER:PTHR23212\:SF0, PRO:DNx] +def: "A brain acid soluble protein 1 that is encoded in the genome of chicken." [OMA:P23614, PRO:DNx] comment: Category=organism-gene. synonym: "23 kDa cortical cytoskeleton-associated protein (chicken)" EXACT [UniProtKB:P23614] synonym: "BASP1" RELATED Gene-based [UniProtKB:P23614] @@ -163187,7 +163811,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P23824 name: GATA-binding factor 2 (chicken) namespace: protein -def: "An endothelial transcription factor GATA-2 that is encoded in the genome of chicken." [OMA:P23824, PANTHER:PTHR10071\:SF107, PRO:DNx] +def: "An endothelial transcription factor GATA-2 that is encoded in the genome of chicken." [OMA:P23824, PRO:DNx] comment: Category=organism-gene. synonym: "chick-GATA2" EXACT PRO-short-label [PRO:DNx] synonym: "GATA-2 (chicken)" EXACT [UniProtKB:P23824] @@ -163205,7 +163829,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P23825 name: GATA-binding factor 3 (chicken) namespace: protein -def: "A trans-acting T-cell-specific transcription factor GATA-3 that is encoded in the genome of chicken." [OMA:P23825, PANTHER:PTHR10071\:SF106, PRO:DNx] +def: "A trans-acting T-cell-specific transcription factor GATA-3 that is encoded in the genome of chicken." [OMA:P23825, PRO:DNx] comment: Category=organism-gene. synonym: "chick-GATA3" EXACT PRO-short-label [PRO:DNx] synonym: "GATA-3 (chicken)" EXACT [UniProtKB:P23825] @@ -163480,7 +164104,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P24479 name: protein S100-A11 (chicken) namespace: protein -def: "A protein S100-A11 that is encoded in the genome of chicken." [OMA:P24479, PANTHER:PTHR11639\:SF7, PRO:DNx] +def: "A protein S100-A11 that is encoded in the genome of chicken." [OMA:P24479, PRO:DNx] comment: Category=organism-gene. synonym: "calgizzarin (chicken)" EXACT [UniProtKB:P24479] synonym: "chick-S100A11" EXACT PRO-short-label [PRO:DNx] @@ -163498,7 +164122,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P24503 name: cadherin-4 (chicken) namespace: protein -def: "A cadherin-4 that is encoded in the genome of chicken." [PANTHER:PTHR24027\:SF99, PRO:DNx] +def: "A cadherin-4 that is encoded in the genome of chicken." [OMA:P24503, PRO:DNx] comment: Category=organism-gene. synonym: "CDH4" RELATED Gene-based [UniProtKB:P24503] synonym: "chick-CDH4" EXACT PRO-short-label [PRO:DNx] @@ -163908,7 +164532,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P25155 name: coagulation factor X (chicken) namespace: protein -def: "A coagulation factor X that is encoded in the genome of chicken." [OMA:P25155, PANTHER:PTHR24265\:SF64, PRO:DNx] +def: "A coagulation factor X that is encoded in the genome of chicken." [OMA:P25155, PRO:DNx] comment: Category=organism-gene. synonym: "chick-F10" EXACT PRO-short-label [PRO:DNx] synonym: "F10" RELATED Gene-based [UniProtKB:P25155] @@ -163980,17 +164604,17 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P25398 -name: 40S ribosomal protein S12 (human) +name: small ribosomal subunit protein eS12 (human) namespace: protein -def: "A 40S ribosomal protein S12 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P25398] +def: "A small ribosomal subunit protein eS12 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P25398] comment: Category=organism-gene. +synonym: "40S ribosomal protein S12 (human)" EXACT [UniProtKB:P25398] synonym: "hRPS12" EXACT PRO-short-label [PRO:DNx] synonym: "RPS12" RELATED Gene-based [UniProtKB:P25398] -synonym: "small ribosomal subunit protein eS12 (human)" EXACT [UniProtKB:P25398] xref: UniProtKB:P25398 -is_a: PR:000014253 ! 40S ribosomal protein S12 +is_a: PR:000014253 ! small ribosomal subunit protein eS12 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000014253 ! 40S ribosomal protein S12 +intersection_of: PR:000014253 ! small ribosomal subunit protein eS12 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -164314,7 +164938,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P26008 name: integrin alpha-V (chicken) namespace: protein -def: "An integrin alpha-V that is encoded in the genome of chicken." [PRO:DNx] +def: "An integrin alpha-V that is encoded in the genome of chicken." [OMA:P26008, PRO:DNx] comment: Category=organism-gene. synonym: "chick-ITGAV" EXACT PRO-short-label [PRO:DNx] synonym: "ITGAV" RELATED Gene-based [UniProtKB:P26008] @@ -164438,7 +165062,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P26152 name: neuronal acetylcholine receptor subunit alpha-5 (chicken) namespace: protein -def: "A neuronal acetylcholine receptor subunit alpha-5 that is encoded in the genome of chicken." [PANTHER:PTHR18945\:SF76, PRO:DNx] +def: "A neuronal acetylcholine receptor subunit alpha-5 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-CHRNA5" EXACT PRO-short-label [PRO:DNx] synonym: "CHRNA5" RELATED Gene-based [UniProtKB:P26152] @@ -164638,6 +165262,22 @@ intersection_of: PR:000009166 ! isovaleryl-CoA dehydrogenase, mitochondrial intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: PR:P26441 +name: ciliary neurotrophic factor (human) +namespace: protein +def: "A ciliary neurotrophic factor that is encoded in the genome of human." [PRO:DNx, UniProtKB:P26441] +comment: Category=organism-gene. +synonym: "CNTF" RELATED Gene-based [UniProtKB:P26441] +synonym: "hCNTF" EXACT PRO-short-label [PRO:DNx] +xref: Reactome:R-HSA-5696441 "PR:P26441 located_in GO:0005576" +xref: UniProtKB:P26441 +is_a: PR:000005663 ! ciliary neurotrophic factor +is_a: PR:000029067 ! Homo sapiens protein +intersection_of: PR:000005663 ! ciliary neurotrophic factor +intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens + [Term] id: PR:P26443 name: glutamate dehydrogenase 1, mitochondrial (mouse) @@ -165242,7 +165882,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P27092 name: inhibin beta A chain (chicken) namespace: protein -def: "An activin/inhibin beta A chain that is encoded in the genome of chicken." [PANTHER:PTHR11848\:SF28, PRO:DNx] +def: "An activin/inhibin beta A chain that is encoded in the genome of chicken." [OMA:P27092, PRO:DNx] comment: Category=organism-gene. synonym: "activin beta-A chain (chicken)" EXACT [UniProtKB:P27092] synonym: "chick-INHBA" EXACT PRO-short-label [PRO:DNx] @@ -165530,7 +166170,6 @@ synonym: "hARNT" EXACT PRO-short-label [PRO:DNx] synonym: "HIF-1-beta (human)" EXACT [UniProtKB:P27540] synonym: "HIF1-beta (human)" EXACT [UniProtKB:P27540] synonym: "hypoxia-inducible factor 1-beta (human)" EXACT [UniProtKB:P27540] -xref: Reactome:R-HSA-1234098 "PR:P27540 located_in GO:0005654" xref: UniProtKB:P27540 is_a: PR:000004303 ! aryl hydrocarbon receptor nuclear translocator is_a: PR:000029067 ! Homo sapiens protein @@ -165678,7 +166317,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P27731 name: transthyretin (chicken) namespace: protein -def: "A transthyretin that is encoded in the genome of chicken." [OMA:P27731, PANTHER:PTHR10395\:SF7, PRO:DNx] +def: "A transthyretin that is encoded in the genome of chicken." [OMA:P27731, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TTR" EXACT PRO-short-label [PRO:DNx] synonym: "prealbumin (chicken)" EXACT [UniProtKB:P27731] @@ -165741,19 +166380,20 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P27815 -name: cAMP-specific 3',5'-cyclic phosphodiesterase 4A (human) +name: 3',5'-cyclic-AMP phosphodiesterase 4A (human) namespace: protein -def: "A cAMP-specific 3',5'-cyclic phosphodiesterase 4A that is encoded in the genome of human." [PRO:DNx, UniProtKB:P27815] +def: "A 3',5'-cyclic-AMP phosphodiesterase 4A that is encoded in the genome of human." [PRO:DNx, UniProtKB:P27815] comment: Category=organism-gene. +synonym: "cAMP-specific phosphodiesterase 4A (human)" EXACT [UniProtKB:P27815] synonym: "DPDE2" RELATED Gene-based [UniProtKB:P27815] synonym: "hPDE4A" EXACT PRO-short-label [PRO:DNx] synonym: "PDE46 (human)" EXACT [UniProtKB:P27815] synonym: "PDE4A" RELATED Gene-based [UniProtKB:P27815] xref: Reactome:R-HSA-52383 "PR:P27815 located_in GO:0005829" xref: UniProtKB:P27815 -is_a: PR:000012472 ! cAMP-specific 3',5'-cyclic phosphodiesterase 4A +is_a: PR:000012472 ! 3',5'-cyclic-AMP phosphodiesterase 4A is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000012472 ! cAMP-specific 3',5'-cyclic phosphodiesterase 4A +intersection_of: PR:000012472 ! 3',5'-cyclic-AMP phosphodiesterase 4A intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -165789,7 +166429,9 @@ is_a: PR:000009234 ! transcription factor JunD is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000009234 ! transcription factor JunD intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/107055370 ! JUND (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00000043641 ! JUND copy 1 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00010027307.1 ! JUND copy 2 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00015022024 ! JUND copy 3 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] @@ -166140,7 +166782,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P28362 name: homeobox protein MSX-2 (chicken) namespace: protein -def: "A homeobox protein MSX-2 that is encoded in the genome of chicken." [OMA:P28362, PANTHER:PTHR24338\:SF137, PRO:DNx] +def: "A homeobox protein MSX-2 that is encoded in the genome of chicken." [OMA:P28362, PRO:DNx] comment: Category=organism-gene. synonym: "chick-MSX2" EXACT PRO-short-label [PRO:DNx] synonym: "CHOX-8 (chicken)" EXACT [UniProtKB:P28362] @@ -166166,7 +166808,7 @@ synonym: "Adh-2" RELATED Gene-based [UniProtKB:P28474] synonym: "ADH-B2 (mouse)" EXACT [UniProtKB:P28474] synonym: "Adh2" RELATED Gene-based [UniProtKB:P28474] synonym: "Adh5" RELATED Gene-based [UniProtKB:P28474] -synonym: "alcohol dehydrogenase 2 (mouse)" EXACT [UniProtKB:P28474] +synonym: "alcohol dehydrogenase 2 (mouse)" RELATED [UniProtKB:P28474] synonym: "alcohol dehydrogenase 5 (mouse)" EXACT [UniProtKB:P28474] synonym: "alcohol dehydrogenase B2 (mouse)" EXACT [UniProtKB:P28474] synonym: "alcohol dehydrogenase class-III (mouse)" EXACT [UniProtKB:P28474] @@ -166262,7 +166904,7 @@ is_a: PR:000003796 ! adenylosuccinate synthetase isozyme 1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000003796 ! adenylosuccinate synthetase isozyme 1 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:87947 ! Adssl1 (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:87947 ! Adss1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -166373,7 +167015,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P28673 name: pro-neuropeptide Y (chicken) namespace: protein -def: "A neuropeptide Y that is encoded in the genome of chicken." [OMA:P28673, PANTHER:PTHR10533\:SF4, PRO:DNx] +def: "A neuropeptide Y that is encoded in the genome of chicken." [OMA:P28673, PRO:DNx] comment: Category=organism-gene. synonym: "chick-NPY" EXACT PRO-short-label [PRO:DNx] synonym: "NPY" RELATED Gene-based [UniProtKB:P28673] @@ -166655,7 +167297,7 @@ synonym: "2'-phospho-ADP-ribosyl cyclase/2'-phospho-cyclic-ADP-ribose transferas synonym: "2'-phospho-cyclic-ADP-ribose transferase (human)" EXACT [UniProtKB:P28907] synonym: "ADP-ribosyl cyclase 1 (human)" EXACT [] synonym: "ADPRC 1 (human)" EXACT [UniProtKB:P28907] -synonym: "cADPr hydrolase 1 (human)" EXACT [UniProtKB:P28907] +synonym: "cADPR hydrolase 1 (human)" EXACT [UniProtKB:P28907] synonym: "CD38" RELATED Gene-based [UniProtKB:P28907] synonym: "cyclic ADP-ribose hydrolase 1 (human)" EXACT [UniProtKB:P28907] synonym: "hCD38" EXACT PRO-short-label [PRO:DNx] @@ -166917,7 +167559,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P29318 name: ephrin type-A receptor 3 (chicken) namespace: protein -def: "An ephrin type-A receptor 3 that is encoded in the genome of chicken." [OMA:P29318, PANTHER:PTHR24416\:SF278, PRO:DNx] +def: "An ephrin type-A receptor 3 that is encoded in the genome of chicken." [OMA:P29318, PRO:DNx] comment: Category=organism-gene. synonym: "CEK4" RELATED Gene-based [UniProtKB:P29318] synonym: "cEK4 (chicken)" EXACT [UniProtKB:P29318] @@ -167047,7 +167689,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P29332 name: G2/mitotic-specific cyclin-B2 (chicken) namespace: protein -def: "A G2/mitotic-specific cyclin-B2 that is encoded in the genome of chicken." [OMA:P29332, PRO:DNx] +def: "A G2/mitotic-specific cyclin-B2 that is encoded in the genome of chicken." [PRO:CNA] comment: Category=organism-gene. synonym: "CCNB2" RELATED Gene-based [UniProtKB:P29332] synonym: "chick-CCNB2" EXACT PRO-short-label [PRO:DNx] @@ -167164,9 +167806,9 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P29474 -name: nitric oxide synthase, endothelial (human) +name: nitric oxide synthase 3 (human) namespace: protein -def: "A nitric oxide synthase, endothelial that is encoded in the genome of human." [PRO:DNx, UniProtKB:P29474] +def: "A nitric oxide synthase 3 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P29474] comment: Category=organism-gene. synonym: "cNOS (human)" EXACT [UniProtKB:P29474] synonym: "constitutive NOS (human)" BROAD [UniProtKB:P29474] @@ -167174,13 +167816,14 @@ synonym: "EC-NOS (human)" EXACT [UniProtKB:P29474] synonym: "endothelial NOS (human)" EXACT [UniProtKB:P29474] synonym: "eNOS (human)" EXACT [UniProtKB:P29474] synonym: "hNOS3" EXACT PRO-short-label [PRO:DNx] +synonym: "nitric oxide synthase, endothelial (human)" EXACT [UniProtKB:P29474] synonym: "NOS type III (human)" EXACT [UniProtKB:P29474] synonym: "NOS3" RELATED Gene-based [UniProtKB:P29474] synonym: "NOSIII (human)" EXACT [UniProtKB:P29474] xref: UniProtKB:P29474 -is_a: PR:000011328 ! nitric oxide synthase, endothelial +is_a: PR:000011328 ! nitric oxide synthase 3 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000011328 ! nitric oxide synthase, endothelial +intersection_of: PR:000011328 ! nitric oxide synthase 3 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -167510,18 +168153,18 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P30050 -name: 60S ribosomal protein L12 (human) +name: large ribosomal subunit protein uL11 (human) namespace: protein -def: "A 60S ribosomal protein L12 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P30050] +def: "A eukaryotic-type large ribosomal subunit protein uL11 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P30050] comment: Category=organism-gene. +synonym: "60S ribosomal protein L12 (human)" EXACT [UniProtKB:P30050] synonym: "hRPL12" EXACT PRO-short-label [PRO:DNx] -synonym: "large ribosomal subunit protein uL11 (human)" EXACT [UniProtKB:P30050] synonym: "RPL12" RELATED Gene-based [UniProtKB:P30050] xref: Reactome:R-HSA-72408 "PR:P30050 located_in GO:0005829" xref: UniProtKB:P30050 -is_a: PR:000014191 ! 60S ribosomal protein L12 +is_a: PR:000014191 ! eukaryotic-type large ribosomal subunit protein uL11 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000014191 ! 60S ribosomal protein L12 +intersection_of: PR:000014191 ! eukaryotic-type large ribosomal subunit protein uL11 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -168150,7 +168793,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P31043 name: T-cell-specific surface glycoprotein CD28 homolog (chicken) namespace: protein -def: "A T-cell-specific surface glycoprotein CD28 that is encoded in the genome of chicken." [PANTHER:PTHR11494\:SF6, PRO:DNx] +def: "A T-cell-specific surface glycoprotein CD28 that is encoded in the genome of chicken." [PRO:WCB] comment: Category=organism-gene. synonym: "CD28" RELATED Gene-based [UniProtKB:P31043] synonym: "chick-CD28" EXACT PRO-short-label [PRO:DNx] @@ -168337,7 +168980,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P31395 name: stathmin (chicken) namespace: protein -def: "A stathmin that is encoded in the genome of chicken." [OMA:P31395, PANTHER:PTHR10104\:SF5, PRO:DNx] +def: "A stathmin that is encoded in the genome of chicken." [OMA:P31395, PRO:DNx] comment: Category=organism-gene. synonym: "chick-STMN1" EXACT PRO-short-label [PRO:DNx] synonym: "LAP18" RELATED Gene-based [UniProtKB:P31395] @@ -168841,6 +169484,7 @@ comment: Category=organism-gene. synonym: "hOTX2" EXACT PRO-short-label [PRO:DNx] synonym: "orthodenticle homolog 2 (human)" EXACT [UniProtKB:P32243] synonym: "OTX2" RELATED Gene-based [UniProtKB:P32243] +xref: Reactome:R-HSA-9832936 "PR:P32243 located_in GO:0005654" xref: UniProtKB:P32243 is_a: PR:000012086 ! homeobox protein OTX2 is_a: PR:000029067 ! Homo sapiens protein @@ -169288,7 +169932,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P33005 name: anosmin-1 (chicken) namespace: protein -def: "An anosmin-1 that is encoded in the genome of chicken." [PANTHER:PTHR14131\:SF0, PRO:DNx] +def: "An anosmin-1 that is encoded in the genome of chicken." [OMA:P33005, PRO:DNx] comment: Category=organism-gene. synonym: "ANOS1" RELATED Gene-based [UniProtKB:P33005] synonym: "chick-ANOS1" EXACT PRO-short-label [PRO:DNx] @@ -169307,7 +169951,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P33094 name: somatostatin (chicken) namespace: protein -def: "A somatostatin that is encoded in the genome of chicken." [OMA:P33094, PANTHER:PTHR10558\:SF0, PRO:DNx] +def: "A somatostatin that is encoded in the genome of chicken." [OMA:P33094, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SST" EXACT PRO-short-label [PRO:DNx] synonym: "SST" RELATED Gene-based [UniProtKB:P33094] @@ -169323,7 +169967,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P33150 name: cadherin-13 (chicken) namespace: protein -def: "A cadherin-13 that is encoded in the genome of chicken." [OMA:P33150, PRO:DNx] +def: "A cadherin-13 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "CDH13" RELATED Gene-based [UniProtKB:P33150] synonym: "chick-CDH13" EXACT PRO-short-label [PRO:DNx] @@ -169601,7 +170245,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P34743 name: protein BTG1 (chicken) namespace: protein -def: "A protein BTG1 that is encoded in the genome of chicken." [PANTHER:PTHR22978\:SF7, PRO:DNx] +def: "A protein BTG1 that is encoded in the genome of chicken." [OMA:P34743, PRO:DNx] comment: Category=organism-gene. synonym: "B-cell translocation gene 1 protein (chicken)" EXACT [UniProtKB:P34743] synonym: "BTG1" RELATED Gene-based [UniProtKB:P34743] @@ -170041,6 +170685,7 @@ synonym: "hPTPN7" EXACT PRO-short-label [PRO:DNx] synonym: "protein-tyrosine phosphatase LC-PTP (human)" EXACT [UniProtKB:P35236] synonym: "PTPN7" RELATED Gene-based [UniProtKB:P35236] xref: Reactome:R-HSA-9008913 "PR:P35236 located_in GO:0005654" +xref: Reactome:R-HSA-9635737 "PR:P35236 located_in GO:0005829" xref: UniProtKB:P35236 is_a: PR:000013462 ! tyrosine-protein phosphatase non-receptor type 7 is_a: PR:000029067 ! Homo sapiens protein @@ -170959,16 +171604,17 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P35979 -name: 60S ribosomal protein L12 (mouse) +name: large ribosomal subunit protein uL11 (mouse) namespace: protein -def: "A 60S ribosomal protein L12 that is encoded in the genome of mouse." [OMA:P35979, PRO:DNx] +def: "A eukaryotic-type large ribosomal subunit protein uL11 that is encoded in the genome of mouse." [OMA:P35979, PRO:DNx] comment: Category=organism-gene. +synonym: "60S ribosomal protein L12 (mouse)" EXACT [UniProtKB:P35979] synonym: "mRPL12" EXACT PRO-short-label [PRO:DNx] synonym: "Rpl12" RELATED Gene-based [UniProtKB:P35979] xref: UniProtKB:P35979 -is_a: PR:000014191 ! 60S ribosomal protein L12 +is_a: PR:000014191 ! eukaryotic-type large ribosomal subunit protein uL11 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000014191 ! 60S ribosomal protein L12 +intersection_of: PR:000014191 ! eukaryotic-type large ribosomal subunit protein uL11 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:98002 ! Rpl12 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -171099,7 +171745,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P36381 name: gap junction alpha-8 protein (chicken) namespace: protein -def: "A gap junction alpha-8 protein that is encoded in the genome of chicken." [OMA:P36381, PANTHER:PTHR11984\:SF19, PRO:DNx] +def: "A gap junction alpha-8 protein that is encoded in the genome of chicken." [OMA:P36381, PRO:DNx] comment: Category=organism-gene. synonym: "chick-GJA8" EXACT PRO-short-label [PRO:DNx] synonym: "connexin-45.6 (chicken)" EXACT [UniProtKB:P36381] @@ -171531,7 +172177,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P37042 name: progonadoliberin-1 (chicken) namespace: protein -def: "A progonadoliberin-1 that is encoded in the genome of chicken." [OMA:P37042, PANTHER:PTHR10522\:SF0, PRO:DNx] +def: "A progonadoliberin-1 that is encoded in the genome of chicken." [OMA:P37042, PRO:DNx] comment: Category=organism-gene. synonym: "chick-GNRH1" EXACT PRO-short-label [PRO:DNx] synonym: "GNRH1" RELATED Gene-based [UniProtKB:P37042] @@ -171697,7 +172343,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P37383 name: DNA repair protein RAD51 homolog 1 (chicken) namespace: protein -def: "A DNA repair protein RAD51 homolog 1 that is encoded in the genome of chicken." [OMA:P37383, PANTHER:PTHR22942\:SF12, PRO:DNx] +def: "A DNA repair protein RAD51 homolog 1 that is encoded in the genome of chicken." [OMA:P37383, PRO:DNx] comment: Category=organism-gene. synonym: "chick-RAD51" EXACT PRO-short-label [PRO:DNx] synonym: "RAD51" RELATED Gene-based [UniProtKB:P37383] @@ -171775,7 +172421,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P38024 name: multifunctional protein ADE2 (chicken) namespace: protein -def: "A bifunctional phosphoribosylaminoimidazole carboxylase/phosphoribosylaminoimidazole succinocarboxamide synthetase that is encoded in the genome of chicken." [PANTHER:PTHR11609\:SF2, PRO:DNx] +def: "A bifunctional phosphoribosylaminoimidazole carboxylase/phosphoribosylaminoimidazole succinocarboxamide synthetase that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "AIRC" RELATED Gene-based [UniProtKB:P38024] synonym: "chick-PAICS" EXACT PRO-short-label [PRO:DNx] @@ -171949,17 +172595,17 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P39019 -name: 40S ribosomal protein S19 (human) +name: small ribosomal subunit protein eS19 (human) namespace: protein -def: "A 40S ribosomal protein S19 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P39019] +def: "A small ribosomal subunit protein eS19 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P39019] comment: Category=organism-gene. +synonym: "40S ribosomal protein S19 (human)" EXACT [UniProtKB:P39019] synonym: "hRPS19" EXACT PRO-short-label [PRO:DNx] synonym: "RPS19" RELATED Gene-based [UniProtKB:P39019] -synonym: "small ribosomal subunit protein eS19 (human)" EXACT [UniProtKB:P39019] xref: UniProtKB:P39019 -is_a: PR:000014261 ! 40S ribosomal protein S19 +is_a: PR:000014261 ! small ribosomal subunit protein eS19 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000014261 ! 40S ribosomal protein S19 +intersection_of: PR:000014261 ! small ribosomal subunit protein eS19 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -171990,6 +172636,8 @@ def: "A dynamin-1 that is encoded in the genome of mouse." [OMA:P39053, PRO:DNx] comment: Category=organism-gene. synonym: "Dnm" RELATED Gene-based [UniProtKB:P39053] synonym: "Dnm1" RELATED Gene-based [UniProtKB:P39053] +synonym: "dynamin (mouse)" EXACT [UniProtKB:P39053] +synonym: "dynamin I (mouse)" EXACT [UniProtKB:P39053] synonym: "Kiaa4093" RELATED Gene-based [UniProtKB:P39053] synonym: "mDNM1" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:P39053 @@ -173626,6 +174274,7 @@ synonym: "hSTAT5A" EXACT PRO-short-label [PRO:DNx] synonym: "STAT5" RELATED Gene-based [UniProtKB:P42229] synonym: "STAT5A" RELATED Gene-based [UniProtKB:P42229] xref: Reactome:R-HSA-380747 "PR:P42229 located_in GO:0005829" +xref: Reactome:R-HSA-9701901 "PR:P42229 located_in GO:0005654" xref: UniProtKB:P42229 is_a: PR:000002091 ! signal transducer and activator of transcription 5a is_a: PR:000029067 ! Homo sapiens protein @@ -173935,7 +174584,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P43031 name: inhibin alpha chain (chicken) namespace: protein -def: "An inhibin alpha chain that is encoded in the genome of chicken." [PANTHER:PTHR10863\:SF0, PRO:DNx] +def: "An inhibin alpha chain that is encoded in the genome of chicken." [OMA:P43031, PRO:DNx] comment: Category=organism-gene. synonym: "chick-INHA" EXACT PRO-short-label [PRO:DNx] synonym: "INHA" RELATED Gene-based [UniProtKB:P43031] @@ -174002,6 +174651,7 @@ synonym: "mHex" EXACT [UniProtKB:P43120] synonym: "mHHEX" EXACT PRO-short-label [PRO:DNx] synonym: "Prh" RELATED Gene-based [UniProtKB:P43120] synonym: "Prhx" RELATED Gene-based [UniProtKB:P43120] +synonym: "proline-rich homeodomain protein (mouse)" EXACT [UniProtKB:P43120] xref: UniProtKB:P43120 is_a: PR:000008540 ! hematopoietically-expressed homeobox protein HHEX is_a: PR:000029032 ! Mus musculus protein @@ -174737,7 +175387,7 @@ is_a: PR:000003901 ! aldo-keto reductase family 1 member B1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000003901 ! aldo-keto reductase family 1 member B1 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1353494 ! Akr1b3 (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1353494 ! Akr1b1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -175230,18 +175880,18 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P46777 -name: 60S ribosomal protein L5 (human) +name: large ribosomal subunit protein uL18 (human) namespace: protein -def: "A 60S ribosomal protein L5 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P46777] +def: "A eukaryotic-type large ribosomal subunit protein uL18 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P46777] comment: Category=organism-gene. +synonym: "60S ribosomal protein L5 (human)" EXACT [UniProtKB:P46777] synonym: "hRPL5" EXACT PRO-short-label [PRO:DNx] -synonym: "large ribosomal subunit protein uL18 (human)" EXACT [UniProtKB:P46777] synonym: "MSTP030" RELATED Gene-based [UniProtKB:P46777] synonym: "RPL5" RELATED Gene-based [UniProtKB:P46777] xref: UniProtKB:P46777 -is_a: PR:000014230 ! 60S ribosomal protein L5 +is_a: PR:000014230 ! eukaryotic-type large ribosomal subunit protein uL18 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000014230 ! 60S ribosomal protein L5 +intersection_of: PR:000014230 ! eukaryotic-type large ribosomal subunit protein uL18 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -175272,7 +175922,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P46936 name: transcriptional coactivator YAP1 (chicken) namespace: protein -def: "A transcriptional coactivator YAP1 that is encoded in the genome of chicken." [PANTHER:PTHR17616\:SF7, PRO:DNx] +def: "A transcriptional coactivator YAP1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "65 kDa Yes-associated protein (chicken)" EXACT [UniProtKB:P46936] synonym: "chick-YAP1" EXACT PRO-short-label [PRO:DNx] @@ -175334,7 +175984,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P47191 name: synaptotagmin-1 (chicken) namespace: protein -def: "A synaptotagmin-1 that is encoded in the genome of chicken." [OMA:P47191, PANTHER:PTHR10024\:SF39, PRO:DNx] +def: "A synaptotagmin-1 that is encoded in the genome of chicken." [OMA:P47191, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SYT1" EXACT PRO-short-label [PRO:DNx] synonym: "p65 (chicken)" BROAD [UniProtKB:P47191] @@ -175617,6 +176267,7 @@ comment: Category=organism-gene. synonym: "eIF-1A X isoform (human)" EXACT [UniProtKB:P47813] synonym: "eIF-4C (human)" BROAD [UniProtKB:P47813] synonym: "EIF1A" RELATED Gene-based [UniProtKB:P47813] +synonym: "eIF1A X isoform (human)" EXACT [UniProtKB:P47813] synonym: "EIF1AX" RELATED Gene-based [UniProtKB:P47813] synonym: "EIF4C" RELATED Gene-based [UniProtKB:P47813] synonym: "eukaryotic translation initiation factor 4C (human)" BROAD [UniProtKB:P47813] @@ -175631,16 +176282,17 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P47836 -name: 40S ribosomal protein S4 (chicken) +name: small ribosomal subunit protein eS4 (chicken) namespace: protein -def: "A 40S ribosomal protein S4, X isoform that is encoded in the genome of chicken." [OMA:P47836, PANTHER:PTHR11581\:SF0, PRO:DNx] +def: "A small ribosomal subunit protein eS4, X isoform that is encoded in the genome of chicken." [OMA:P47836, PRO:DNx] comment: Category=organism-gene. +synonym: "40S ribosomal protein S4 (chicken)" EXACT [UniProtKB:P47836] synonym: "chick-RPS4X" EXACT PRO-short-label [PRO:DNx] synonym: "RPS4" RELATED Gene-based [UniProtKB:P47836] xref: UniProtKB:P47836 -is_a: PR:000014277 ! 40S ribosomal protein S4, X isoform +is_a: PR:000014277 ! small ribosomal subunit protein eS4, X isoform is_a: PR:000029063 ! Gallus gallus protein -intersection_of: PR:000014277 ! 40S ribosomal protein S4, X isoform +intersection_of: PR:000014277 ! small ribosomal subunit protein eS4, X isoform intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/396001 ! RPS4 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus @@ -175827,21 +176479,21 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P47895 -name: aldehyde dehydrogenase family 1 member A3 (human) +name: retinaldehyde dehydrogenase 3 (human) namespace: protein -def: "An aldehyde dehydrogenase family 1 member A3 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P47895] +def: "A retinaldehyde dehydrogenase 3 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P47895] comment: Category=organism-gene. synonym: "aldehyde dehydrogenase 6 (human)" EXACT [UniProtKB:P47895] +synonym: "aldehyde dehydrogenase family 1 member A3 (human)" EXACT [UniProtKB:P47895] synonym: "ALDH1A3" RELATED Gene-based [UniProtKB:P47895] synonym: "ALDH6" RELATED Gene-based [UniProtKB:P47895] synonym: "hALDH1A3" EXACT PRO-short-label [PRO:DNx] synonym: "RALDH-3 (human)" EXACT [UniProtKB:P47895] synonym: "RalDH3 (human)" EXACT [UniProtKB:P47895] -synonym: "retinaldehyde dehydrogenase 3 (human)" EXACT [UniProtKB:P47895] xref: UniProtKB:P47895 -is_a: PR:000003922 ! aldehyde dehydrogenase family 1 member A3 +is_a: PR:000003922 ! retinaldehyde dehydrogenase 3 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000003922 ! aldehyde dehydrogenase family 1 member A3 +intersection_of: PR:000003922 ! retinaldehyde dehydrogenase 3 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -175919,16 +176571,17 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P47962 -name: 60S ribosomal protein L5 (mouse) +name: large ribosomal subunit protein uL18 (mouse) namespace: protein -def: "A 60S ribosomal protein L5 that is encoded in the genome of mouse." [OMA:P47962, PRO:DNx] +def: "A eukaryotic-type large ribosomal subunit protein uL18 that is encoded in the genome of mouse." [OMA:P47962, PRO:DNx] comment: Category=organism-gene. +synonym: "60S ribosomal protein L5 (mouse)" EXACT [UniProtKB:P47962] synonym: "mRPL5" EXACT PRO-short-label [PRO:DNx] synonym: "Rpl5" RELATED Gene-based [UniProtKB:P47962] xref: UniProtKB:P47962 -is_a: PR:000014230 ! 60S ribosomal protein L5 +is_a: PR:000014230 ! eukaryotic-type large ribosomal subunit protein uL18 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000014230 ! 60S ribosomal protein L5 +intersection_of: PR:000014230 ! eukaryotic-type large ribosomal subunit protein uL18 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:102854 ! Rpl5 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -175989,7 +176642,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P47990 name: xanthine dehydrogenase/oxidase (chicken) namespace: protein -def: "A xanthine dehydrogenase/oxidase that is encoded in the genome of chicken." [PANTHER:PTHR11908\:SF11, PRO:DNx] +def: "A xanthine dehydrogenase/oxidase that is encoded in the genome of chicken." [OMA:P47990, PRO:DNx] comment: Category=organism-gene. synonym: "chick-XDH" EXACT PRO-short-label [PRO:DNx] synonym: "XDH" RELATED Gene-based [UniProtKB:P47990] @@ -176269,7 +176922,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P48143 name: VIP peptides (chicken) namespace: protein -def: "A VIP peptides that is encoded in the genome of chicken." [PRO:DNx] +def: "A VIP peptides that is encoded in the genome of chicken." [OMA:P48143, PRO:DNx] comment: Category=organism-gene. synonym: "chick-VIP" EXACT PRO-short-label [PRO:DNx] synonym: "VIP" RELATED Gene-based [UniProtKB:P48143] @@ -176542,7 +177195,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P48430 name: transcription factor SOX-2 (chicken) namespace: protein -def: "A transcription factor SOX-2 that is encoded in the genome of chicken." [PANTHER:PTHR10270\:SF47, PRO:DNx] +def: "A transcription factor SOX-2 that is encoded in the genome of chicken." [OMA:P48430, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SOX2" EXACT PRO-short-label [PRO:DNx] synonym: "cSox2 (chicken)" EXACT [UniProtKB:P48430] @@ -177042,7 +177695,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P48801 name: fibroblast growth factor 3 (chicken) namespace: protein -def: "A fibroblast growth factor 3 that is encoded in the genome of chicken." [OMA:P48801, PANTHER:PTHR11486\:SF26, PRO:DNx] +def: "A fibroblast growth factor 3 that is encoded in the genome of chicken." [OMA:P48801, PRO:DNx] comment: Category=organism-gene. synonym: "chick-FGF3" EXACT PRO-short-label [PRO:DNx] synonym: "FGF-3" RELATED Gene-based [UniProtKB:P48801] @@ -177097,7 +177750,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P48984 name: transcriptional enhancer factor TEF-3 (chicken) namespace: protein -def: "A transcriptional enhancer factor TEF-3 that is encoded in the genome of chicken." [OMA:P48984, PRO:DNx] +def: "A transcriptional enhancer factor TEF-3 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-TEAD4" EXACT PRO-short-label [PRO:DNx] synonym: "M-CAT-binding factor (chicken)" EXACT [UniProtKB:P48984] @@ -177236,7 +177889,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P49147 name: cytosolic phospholipase A2 (chicken) namespace: protein -def: "A cytosolic phospholipase A2 that is encoded in the genome of chicken." [OMA:P49147, PANTHER:PTHR10728\:SF13, PRO:DNx] +def: "A cytosolic phospholipase A2 that is encoded in the genome of chicken." [OMA:P49147, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PLA2G4A" EXACT PRO-short-label [PRO:DNx] synonym: "CPLA2" RELATED Gene-based [UniProtKB:P49147] @@ -177463,7 +178116,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P49339 name: protein Wnt-11 (chicken) namespace: protein -def: "A protein Wnt-11 that is encoded in the genome of chicken." [OMA:P49339, PANTHER:PTHR12027\:SF7, PRO:DNx] +def: "A protein Wnt-11 that is encoded in the genome of chicken." [OMA:P49339, PRO:DNx] comment: Category=organism-gene. synonym: "chick-WNT11" EXACT PRO-short-label [PRO:DNx] synonym: "WNT-11" RELATED Gene-based [UniProtKB:P49339] @@ -177522,7 +178175,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P49416 name: syndecan-4 (chicken) namespace: protein -def: "A syndecan-4 that is encoded in the genome of chicken." [OMA:P49416, PANTHER:PTHR10915\:SF3, PRO:DNx] +def: "A syndecan-4 that is encoded in the genome of chicken." [OMA:P49416, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SDC4" EXACT PRO-short-label [PRO:DNx] synonym: "SDC4" RELATED Gene-based [UniProtKB:P49416] @@ -177883,7 +178536,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P49702 name: ADP-ribosylation factor 5 (chicken) namespace: protein -def: "An ADP-ribosylation factor 5 that is encoded in the genome of chicken." [PRO:DNx] +def: "An ADP-ribosylation factor 5 that is encoded in the genome of chicken." [OMA:P49702, PRO:DNx] comment: Category=organism-gene. synonym: "ARF5" RELATED Gene-based [UniProtKB:P49702] synonym: "chick-ARF5" EXACT PRO-short-label [PRO:DNx] @@ -177936,7 +178589,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P49708 name: interferon gamma (chicken) namespace: protein -def: "An interferon gamma that is encoded in the genome of chicken." [OMA:P49708, PANTHER:PTHR11419\:SF0, PRO:DNx] +def: "An interferon gamma that is encoded in the genome of chicken." [OMA:P49708, PRO:DNx] comment: Category=organism-gene. synonym: "chick-IFNG" EXACT PRO-short-label [PRO:DNx] synonym: "IFN-gamma (chicken)" EXACT [UniProtKB:P49708] @@ -178611,7 +179264,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P50141 name: GTP cyclohydrolase 1 (chicken) namespace: protein -def: "A GTP cyclohydrolase 1 that is encoded in the genome of chicken." [OMA:P50141, PANTHER:PTHR11109\:SF0, PRO:DNx] +def: "A GTP cyclohydrolase 1 that is encoded in the genome of chicken." [OMA:P50141, PRO:DNx] comment: Category=organism-gene. synonym: "chick-GCH1" EXACT PRO-short-label [PRO:DNx] synonym: "GCH1" RELATED Gene-based [UniProtKB:P50141] @@ -178689,7 +179342,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P50211 name: insulin gene enhancer protein ISL-1 (chicken) namespace: protein -def: "An insulin gene enhancer protein ISL-1 that is encoded in the genome of chicken." [OMA:P50211, PANTHER:PTHR24204\:SF26, PRO:DNx] +def: "An insulin gene enhancer protein ISL-1 that is encoded in the genome of chicken." [OMA:P50211, PRO:DNx] comment: Category=organism-gene. synonym: "chick-ISL1" EXACT PRO-short-label [PRO:DNx] synonym: "ISL-1" RELATED Gene-based [UniProtKB:P50211] @@ -178893,6 +179546,7 @@ synonym: "STA" RELATED Gene-based [UniProtKB:P50402] xref: Reactome:R-HSA-201573 "PR:P50402 located_in GO:0005635" xref: Reactome:R-HSA-9613988 "PR:P50402 located_in GO:0005829" xref: Reactome:R-HSA-9613998 "PR:P50402 located_in GO:0005789" +xref: Reactome:R-HSA-9715092 "PR:P50402 located_in GO:0010008" xref: UniProtKB:P50402 is_a: PR:000007050 ! emerin is_a: PR:000029067 ! Homo sapiens protein @@ -179073,7 +179727,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P50478 name: amphiphysin (chicken) namespace: protein -def: "An amphiphysin that is encoded in the genome of chicken." [PANTHER:PTHR10321\:SF23, PRO:DNx] +def: "An amphiphysin that is encoded in the genome of chicken." [OMA:P50478, PRO:DNx] comment: Category=organism-gene. synonym: "AMPH" RELATED Gene-based [UniProtKB:P50478] synonym: "chick-AMPH" EXACT PRO-short-label [PRO:DNx] @@ -179250,6 +179904,8 @@ def: "A dynamin-2 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P comment: Category=organism-gene. synonym: "DNM2" RELATED Gene-based [UniProtKB:P50570] synonym: "DYN2" RELATED Gene-based [UniProtKB:P50570] +synonym: "dynamin 2 (human)" EXACT [UniProtKB:P50570] +synonym: "dynamin II (human)" EXACT [UniProtKB:P50570] synonym: "hDNM2" EXACT PRO-short-label [PRO:DNx] xref: Reactome:R-HSA-2029000 "PR:P50570 located_in GO:0030666" xref: Reactome:R-HSA-2213180 "PR:P50570 located_in GO:0005829" @@ -179687,7 +180343,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P51437 name: cathelicidin antimicrobial peptide (mouse) namespace: protein -def: "A cathelicidin antimicrobial peptide that is encoded in the genome of mouse." [OMA:P51437, PANTHER:PTHR10206\:SF0, PRO:DNx] +def: "A cathelicidin antimicrobial peptide that is encoded in the genome of mouse." [OMA:P51437, PRO:DNx] comment: Category=organism-gene. synonym: "Camp" RELATED Gene-based [UniProtKB:P51437] synonym: "cathelin-like protein (mouse)" EXACT [UniProtKB:P51437] @@ -179985,6 +180641,23 @@ intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:107570 ! Cav3 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: PR:P51642 +name: ciliary neurotrophic factor (mouse) +namespace: protein +def: "A ciliary neurotrophic factor that is encoded in the genome of mouse." [OMA:P51642, PRO:DNx] +comment: Category=organism-gene. +synonym: "Cntf" RELATED Gene-based [UniProtKB:P51642] +synonym: "CNTF (mouse)" EXACT [UniProtKB:P51642] +synonym: "mCNTF" EXACT PRO-short-label [PRO:DNx] +xref: UniProtKB:P51642 +is_a: PR:000005663 ! ciliary neurotrophic factor +is_a: PR:000029032 ! Mus musculus protein +intersection_of: PR:000005663 ! ciliary neurotrophic factor +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:88439 ! Cntf (mouse) +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: PR:P51649 name: succinate-semialdehyde dehydrogenase, mitochondrial (human) @@ -180641,7 +181314,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P51887 name: fibromodulin (chicken) namespace: protein -def: "A fibromodulin that is encoded in the genome of chicken." [OMA:P51887, PANTHER:PTHR24371\:SF109, PRO:DNx] +def: "A fibromodulin that is encoded in the genome of chicken." [OMA:P51887, PRO:DNx] comment: Category=organism-gene. synonym: "chick-FMOD" EXACT PRO-short-label [PRO:DNx] synonym: "FM (chicken)" EXACT [UniProtKB:P51887] @@ -180677,7 +181350,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P51890 name: lumican (chicken) namespace: protein -def: "A lumican that is encoded in the genome of chicken." [OMA:P51890, PANTHER:PTHR24371\:SF110, PRO:DNx] +def: "A lumican that is encoded in the genome of chicken." [OMA:P51890, PRO:DNx] comment: Category=organism-gene. synonym: "chick-LUM" EXACT PRO-short-label [PRO:DNx] synonym: "keratan sulfate proteoglycan lumican (chicken)" EXACT [UniProtKB:P51890] @@ -180816,11 +181489,30 @@ intersection_of: PR:000016971 ! ubiquitin-conjugating enzyme E2 E1 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: PR:P51971 +name: eukaryotic translation initiation factor 1 (chicken) +namespace: protein +def: "A eukaryotic translation initiation factor 1 that is encoded in the genome of chicken." [OMA:P51971, PRO:DNx] +comment: Category=organism-gene. +synonym: "chick-EIF1" EXACT PRO-short-label [PRO:DNx] +synonym: "EIF1" RELATED Gene-based [UniProtKB:P51971] +synonym: "eIF1 (chicken)" EXACT [UniProtKB:P51971] +synonym: "protein translation factor SUI1 homolog (chicken)" EXACT [UniProtKB:P51971] +synonym: "SUI1" RELATED Gene-based [UniProtKB:P51971] +xref: UniProtKB:P51971 +is_a: PR:000006955 ! eukaryotic translation initiation factor 1 +is_a: PR:000029063 ! Gallus gallus protein +intersection_of: PR:000006955 ! eukaryotic translation initiation factor 1 +intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus +relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/420037 ! EIF1 (chicken) +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: PR:P52162 name: protein max (chicken) namespace: protein -def: "A protein max that is encoded in the genome of chicken." [OMA:P52162, PRO:DNx] +def: "A protein max that is encoded in the genome of chicken." [PRO:CNA] comment: Category=organism-gene. synonym: "chick-MAX" EXACT PRO-short-label [PRO:DNx] synonym: "MAX" RELATED Gene-based [UniProtKB:P52162] @@ -180830,7 +181522,7 @@ is_a: PR:000010211 ! protein max is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000010211 ! protein max intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/100858676 ! MAX (chicken) +relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=64420 ! MAX (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] @@ -180971,6 +181663,7 @@ synonym: "RAP1GDS1" RELATED Gene-based [UniProtKB:P52306] synonym: "SMG GDS protein (human)" EXACT [UniProtKB:P52306] synonym: "SMG P21 stimulatory GDP/GTP exchange protein (human)" EXACT [UniProtKB:P52306] synonym: "SMGGDS" RELATED Gene-based [UniProtKB:P52306] +xref: Reactome:R-HSA-9693756 "PR:P52306 located_in GO:0005741" xref: UniProtKB:P52306 is_a: PR:000013722 ! Rap1 GTPase-GDP dissociation stimulator 1 is_a: PR:000029067 ! Homo sapiens protein @@ -181003,7 +181696,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P52432 name: DNA-directed RNA polymerases I and III subunit RPAC1 (mouse) namespace: protein -def: "A DNA-directed RNA polymerases I and III subunit RPAC1 that is encoded in the genome of mouse." [OMA:P52432, PANTHER:PTHR11800\:SF13, PRO:DNx] +def: "A DNA-directed RNA polymerases I and III subunit RPAC1 that is encoded in the genome of mouse." [OMA:P52432, PRO:DNx] comment: Category=organism-gene. synonym: "AC40 (mouse)" EXACT [UniProtKB:P52432] synonym: "DNA-directed RNA polymerase I subunit C (mouse)" EXACT [UniProtKB:P52432] @@ -181369,22 +182062,22 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P52815 -name: 39S ribosomal protein L12, mitochondrial (human) +name: large ribosomal subunit protein bL12m (human) namespace: protein -def: "A 39S ribosomal protein L12, mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:P52815] +def: "A large ribosomal subunit protein bL12m that is encoded in the genome of human." [PRO:DNx, UniProtKB:P52815] comment: Category=organism-gene. +synonym: "39S ribosomal protein L12, mitochondrial (human)" EXACT [UniProtKB:P52815] synonym: "5c5-2 (human)" EXACT [UniProtKB:P52815] synonym: "hMRPL12" EXACT PRO-short-label [PRO:DNx] synonym: "L12mt (human)" EXACT [UniProtKB:P52815] -synonym: "mitochondrial large ribosomal subunit protein bL12m (human)" EXACT [UniProtKB:P52815] synonym: "MRP-L12 (human)" EXACT [UniProtKB:P52815] synonym: "MRPL12" RELATED Gene-based [UniProtKB:P52815] synonym: "MRPL7" RELATED Gene-based [UniProtKB:P52815] synonym: "RPML12" RELATED Gene-based [UniProtKB:P52815] xref: UniProtKB:P52815 -is_a: PR:000010574 ! 39S ribosomal protein L12, mitochondrial +is_a: PR:000010574 ! large ribosomal subunit protein bL12m is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000010574 ! 39S ribosomal protein L12, mitochondrial +intersection_of: PR:000010574 ! large ribosomal subunit protein bL12m intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -181732,7 +182425,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P53412 name: LIM/homeobox protein Lhx3 (chicken) namespace: protein -def: "A LIM/homeobox protein Lhx3 that is encoded in the genome of chicken." [OMA:P53412, PANTHER:PTHR25901\:SF37, PRO:DNx] +def: "A LIM/homeobox protein Lhx3 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-LHX3" EXACT PRO-short-label [PRO:DNx] synonym: "homeobox protein LIM-3 (chicken)" EXACT [UniProtKB:P53412] @@ -182194,7 +182887,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P54097 name: beta-tectorin (chicken) namespace: protein -def: "A beta-tectorin that is encoded in the genome of chicken." [OMA:P54097, PANTHER:PTHR22962\:SF8, PRO:DNx] +def: "A beta-tectorin that is encoded in the genome of chicken." [OMA:P54097, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TECTB" EXACT PRO-short-label [PRO:DNx] synonym: "TECTB" RELATED Gene-based [UniProtKB:P54097] @@ -183156,6 +183849,7 @@ synonym: "GTP-binding mitogen-induced T-cell protein (human)" EXACT [UniProtKB:P synonym: "hGEM" EXACT PRO-short-label [PRO:DNx] synonym: "KIR" RELATED Gene-based [UniProtKB:P55040] synonym: "RAS-like protein KIR (human)" EXACT [UniProtKB:P55040] +xref: Reactome:R-HSA-9769962 "PR:P55040 located_in GO:0005886" xref: UniProtKB:P55040 is_a: PR:000007932 ! GTP-binding protein GEM is_a: PR:000029067 ! Homo sapiens protein @@ -183304,6 +183998,8 @@ namespace: protein def: "A transitional endoplasmic reticulum ATPase that is encoded in the genome of human." [PRO:DNx, UniProtKB:P55072] comment: Category=organism-gene. synonym: "15S Mg(2+)-ATPase p97 subunit (human)" EXACT [UniProtKB:P55072] +synonym: "HEL-220" RELATED Gene-based [UniProtKB:P55072] +synonym: "HEL-S-70" RELATED Gene-based [UniProtKB:P55072] synonym: "hVCP" EXACT PRO-short-label [PRO:DNx] synonym: "TER ATPase (human)" EXACT [UniProtKB:P55072] synonym: "valosin-containing protein (human)" EXACT [UniProtKB:P55072] @@ -183568,7 +184264,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P55165 name: beta-crystallin B3 (chicken) namespace: protein -def: "A beta-crystallin B3 that is encoded in the genome of chicken." [OMA:P55165, PANTHER:PTHR11818\:SF13, PRO:DNx] +def: "A beta-crystallin B3 that is encoded in the genome of chicken." [OMA:P55165, PRO:DNx] comment: Category=organism-gene. synonym: "beta-B3 crystallin (chicken)" EXACT [UniProtKB:P55165] synonym: "chick-CRYBB3" EXACT PRO-short-label [PRO:DNx] @@ -183821,7 +184517,7 @@ namespace: protein def: "A protein SEC13 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P55735] comment: Category=organism-gene. synonym: "D3S1231E" RELATED Gene-based [UniProtKB:P55735] -synonym: "GATOR complex protein SEC13 (human)" EXACT [UniProtKB:P55735] +synonym: "GATOR2 complex protein SEC13 (human)" EXACT [UniProtKB:P55735] synonym: "hSEC13" EXACT PRO-short-label [PRO:DNx] synonym: "SEC13" RELATED Gene-based [UniProtKB:P55735] synonym: "SEC13-like protein 1 (human)" EXACT [UniProtKB:P55735] @@ -184068,7 +184764,7 @@ is_a: PR:000004462 ! ATP synthase subunit f, mitochondrial is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000004462 ! ATP synthase subunit f, mitochondrial intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1927558 ! Atp5j2 (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1927558 ! Atp5mf (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -184516,7 +185212,7 @@ synonym: "2'-phospho-ADP-ribosyl cyclase/2'-phospho-cyclic-ADP-ribose transferas synonym: "2'-phospho-cyclic-ADP-ribose transferase (mouse)" EXACT [UniProtKB:P56528] synonym: "ADP-ribosyl cyclase 1 (mouse)" EXACT [UniProtKB:P56528] synonym: "ADPRC 1 (mouse)" EXACT [UniProtKB:P56528] -synonym: "cADPr hydrolase 1 (mouse)" EXACT [UniProtKB:P56528] +synonym: "cADPR hydrolase 1 (mouse)" EXACT [UniProtKB:P56528] synonym: "Cd38" RELATED Gene-based [UniProtKB:P56528] synonym: "CD38 (mouse)" EXACT [UniProtKB:P56528] synonym: "cyclic ADP-ribose hydrolase 1 (mouse)" EXACT [UniProtKB:P56528] @@ -185288,6 +185984,7 @@ synonym: "hSLC26A5" EXACT PRO-short-label [PRO:DNx] synonym: "PRES" RELATED Gene-based [UniProtKB:P58743] synonym: "SLC26A5" RELATED Gene-based [UniProtKB:P58743] synonym: "solute carrier family 26 member 5 (human)" EXACT [UniProtKB:P58743] +xref: Reactome:R-HSA-5216108 "PR:P58743 located_in GO:0005886" xref: UniProtKB:P58743 is_a: PR:000015040 ! prestin is_a: PR:000029067 ! Homo sapiens protein @@ -185323,6 +186020,8 @@ namespace: protein def: "A receptor-interacting serine/threonine-protein kinase 2 that is encoded in the genome of mouse." [OMA:P58801, PRO:DNx] comment: Category=organism-gene. synonym: "mRIPK2" EXACT PRO-short-label [PRO:DNx] +synonym: "receptor-interacting protein 2 (mouse)" EXACT [UniProtKB:P58801] +synonym: "Rip2" RELATED Gene-based [UniProtKB:P58801] synonym: "Ripk2" RELATED Gene-based [UniProtKB:P58801] synonym: "tyrosine-protein kinase RIPK2 (mouse)" EXACT [UniProtKB:P58801] xref: UniProtKB:P58801 @@ -186020,32 +186719,33 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P60866 -name: 40S ribosomal protein S20 (human) +name: small ribosomal subunit protein uS10 (human) namespace: protein -def: "A 40S ribosomal protein S20 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P60866] +def: "A eukaryotic-type small ribosomal subunit protein uS10 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P60866] comment: Category=organism-gene. +synonym: "40S ribosomal protein S20 (human)" EXACT [UniProtKB:P60866] synonym: "hRPS20" EXACT PRO-short-label [PRO:DNx] synonym: "RPS20" RELATED Gene-based [UniProtKB:P60866] -synonym: "small ribosomal subunit protein uS10 (human)" EXACT [UniProtKB:P60866] xref: UniProtKB:P60866 -is_a: PR:000014264 ! 40S ribosomal protein S20 +is_a: PR:000014264 ! eukaryotic-type small ribosomal subunit protein uS10 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000014264 ! 40S ribosomal protein S20 +intersection_of: PR:000014264 ! eukaryotic-type small ribosomal subunit protein uS10 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P60867 -name: 40S ribosomal protein S20 (mouse) +name: small ribosomal subunit protein uS10 (mouse) namespace: protein -def: "A 40S ribosomal protein S20 that is encoded in the genome of mouse." [OMA:P60867, PRO:DNx] +def: "A eukaryotic-type small ribosomal subunit protein uS10 that is encoded in the genome of mouse." [OMA:P60867, PRO:DNx] comment: Category=organism-gene. +synonym: "40S ribosomal protein S20 (mouse)" EXACT [UniProtKB:P60867] synonym: "mRPS20" EXACT PRO-short-label [PRO:DNx] synonym: "Rps20" RELATED Gene-based [UniProtKB:P60867] xref: UniProtKB:P60867 -is_a: PR:000014264 ! 40S ribosomal protein S20 +is_a: PR:000014264 ! eukaryotic-type small ribosomal subunit protein uS10 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000014264 ! 40S ribosomal protein S20 +intersection_of: PR:000014264 ! eukaryotic-type small ribosomal subunit protein uS10 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1914677 ! Rps20 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -186773,21 +187473,21 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P61247 -name: 40S ribosomal protein S3a (human) +name: small ribosomal subunit protein eS1 (human) namespace: protein -def: "A 40S ribosomal protein S3a that is encoded in the genome of human." [PRO:DNx, UniProtKB:P61247] +def: "A small ribosomal subunit protein eS1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P61247] comment: Category=organism-gene. +synonym: "40S ribosomal protein S3a (human)" EXACT [UniProtKB:P61247] synonym: "Fte-1 (human)" EXACT [UniProtKB:P61247] synonym: "FTE1" RELATED Gene-based [UniProtKB:P61247] synonym: "hRPS3A" EXACT PRO-short-label [PRO:DNx] synonym: "MFTL" RELATED Gene-based [UniProtKB:P61247] synonym: "RPS3A" RELATED Gene-based [UniProtKB:P61247] -synonym: "small ribosomal subunit protein eS1 (human)" EXACT [UniProtKB:P61247] synonym: "v-fos transformation effector protein (human)" EXACT [UniProtKB:P61247] xref: UniProtKB:P61247 -is_a: PR:000014276 ! 40S ribosomal protein S3a +is_a: PR:000014276 ! small ribosomal subunit protein eS1 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000014276 ! 40S ribosomal protein S3a +intersection_of: PR:000014276 ! small ribosomal subunit protein eS1 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -187439,7 +188139,6 @@ synonym: "BIG3" RELATED Gene-based [UniProtKB:P61964] synonym: "BMP2-induced 3-kb gene protein (human)" EXACT [UniProtKB:P61964] synonym: "hWDR5" EXACT PRO-short-label [PRO:DNx] synonym: "WDR5" RELATED Gene-based [UniProtKB:P61964] -xref: Reactome:R-HSA-1629838 "PR:P61964 located_in GO:0005654" xref: UniProtKB:P61964 is_a: PR:000017395 ! WD repeat-containing protein 5 is_a: PR:000029067 ! Homo sapiens protein @@ -187861,33 +188560,34 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P62263 -name: 40S ribosomal protein S14 (human) +name: small ribosomal subunit protein uS11 (human) namespace: protein -def: "A 40S ribosomal protein S14 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P62263] +def: "A eukaryotic-type small ribosomal subunit protein uS11 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P62263] comment: Category=organism-gene. +synonym: "40S ribosomal protein S14 (human)" EXACT [UniProtKB:P62263] synonym: "hRPS14" EXACT PRO-short-label [PRO:DNx] synonym: "PRO2640" RELATED Gene-based [UniProtKB:P62263] synonym: "RPS14" RELATED Gene-based [UniProtKB:P62263] -synonym: "small ribosomal subunit protein uS11 (human)" EXACT [UniProtKB:P62263] xref: UniProtKB:P62263 -is_a: PR:000014255 ! 40S ribosomal protein S14 +is_a: PR:000014255 ! eukaryotic-type small ribosomal subunit protein uS11 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000014255 ! 40S ribosomal protein S14 +intersection_of: PR:000014255 ! eukaryotic-type small ribosomal subunit protein uS11 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P62264 -name: 40S ribosomal protein S14 (mouse) +name: small ribosomal subunit protein uS11 (mouse) namespace: protein -def: "A 40S ribosomal protein S14 that is encoded in the genome of mouse." [OMA:P62264, PRO:DNx] +def: "A eukaryotic-type small ribosomal subunit protein uS11 that is encoded in the genome of mouse." [OMA:P62264, PRO:DNx] comment: Category=organism-gene. +synonym: "40S ribosomal protein S14 (mouse)" EXACT [UniProtKB:P62264] synonym: "mRPS14" EXACT PRO-short-label [PRO:DNx] synonym: "Rps14" RELATED Gene-based [UniProtKB:P62264] xref: UniProtKB:P62264 -is_a: PR:000014255 ! 40S ribosomal protein S14 +is_a: PR:000014255 ! eukaryotic-type small ribosomal subunit protein uS11 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000014255 ! 40S ribosomal protein S14 +intersection_of: PR:000014255 ! eukaryotic-type small ribosomal subunit protein uS11 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:98107 ! Rps14 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -187896,7 +188596,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P62303 name: small nuclear ribonucleoprotein E (chicken) namespace: protein -def: "A small nuclear ribonucleoprotein E that is encoded in the genome of chicken." [OMA:P62303, PANTHER:PTHR11193\:SF0, PRO:DNx] +def: "A small nuclear ribonucleoprotein E that is encoded in the genome of chicken." [OMA:P62303, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SNRPE" EXACT PRO-short-label [PRO:DNx] synonym: "Sm protein E (chicken)" EXACT [UniProtKB:P62303] @@ -188301,10 +189001,11 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P62701 -name: 40S ribosomal protein S4, X isoform (human) +name: small ribosomal subunit protein eS4, X isoform (human) namespace: protein -def: "A 40S ribosomal protein S4, X isoform that is encoded in the genome of human." [PRO:DNx, UniProtKB:P62701] +def: "A small ribosomal subunit protein eS4, X isoform that is encoded in the genome of human." [PRO:DNx, UniProtKB:P62701] comment: Category=organism-gene. +synonym: "40S ribosomal protein S4 (human)" RELATED [UniProtKB:P62701] synonym: "CCG2" RELATED Gene-based [UniProtKB:P62701] synonym: "hRPS4X" EXACT PRO-short-label [PRO:DNx] synonym: "RPS4" RELATED Gene-based [UniProtKB:P62701] @@ -188314,25 +189015,26 @@ synonym: "SCR10 (human)" EXACT [UniProtKB:P62701] synonym: "single copy abundant mRNA protein (human)" EXACT [UniProtKB:P62701] synonym: "small ribosomal subunit protein eS4 (human)" BROAD [UniProtKB:P62701] xref: UniProtKB:P62701 -is_a: PR:000014277 ! 40S ribosomal protein S4, X isoform +is_a: PR:000014277 ! small ribosomal subunit protein eS4, X isoform is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000014277 ! 40S ribosomal protein S4, X isoform +intersection_of: PR:000014277 ! small ribosomal subunit protein eS4, X isoform intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P62702 -name: 40S ribosomal protein S4, X isoform (mouse) +name: small ribosomal subunit protein eS4 (mouse) namespace: protein -def: "A 40S ribosomal protein S4, X isoform that is encoded in the genome of mouse." [OMA:P62702, PRO:DNx] +def: "A small ribosomal subunit protein eS4, X isoform that is encoded in the genome of mouse." [OMA:P62702, PRO:DNx] comment: Category=organism-gene. +synonym: "40S ribosomal protein S4, X isoform (mouse)" EXACT [UniProtKB:P62702] synonym: "mRPS4X" EXACT PRO-short-label [PRO:DNx] synonym: "Rps4" RELATED Gene-based [UniProtKB:P62702] synonym: "Rps4x" RELATED Gene-based [UniProtKB:P62702] xref: UniProtKB:P62702 -is_a: PR:000014277 ! 40S ribosomal protein S4, X isoform +is_a: PR:000014277 ! small ribosomal subunit protein eS4, X isoform is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000014277 ! 40S ribosomal protein S4, X isoform +intersection_of: PR:000014277 ! small ribosomal subunit protein eS4, X isoform intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:98158 ! Rps4x (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -188750,85 +189452,87 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P62851 -name: 40S ribosomal protein S25 (human) +name: small ribosomal subunit protein eS25 (human) namespace: protein -def: "A 40S ribosomal protein S25 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P62851] +def: "A small ribosomal subunit protein eS25 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P62851] comment: Category=organism-gene. +synonym: "40S ribosomal protein S25 (human)" EXACT [UniProtKB:P62851] synonym: "hRPS25" EXACT PRO-short-label [PRO:DNx] synonym: "RPS25" RELATED Gene-based [UniProtKB:P62851] -synonym: "small ribosomal subunit protein eS25 (human)" EXACT [UniProtKB:P62851] xref: Reactome:R-HSA-6798707 "PR:P62851 located_in GO:0005654" xref: Reactome:R-HSA-72357 "PR:P62851 located_in GO:0005829" xref: UniProtKB:P62851 -is_a: PR:000014268 ! 40S ribosomal protein S25 +is_a: PR:000014268 ! small ribosomal subunit protein eS25 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000014268 ! 40S ribosomal protein S25 +intersection_of: PR:000014268 ! small ribosomal subunit protein eS25 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P62852 -name: 40S ribosomal protein S25 (mouse) +name: small ribosomal subunit protein eS25 (mouse) namespace: protein -def: "A 40S ribosomal protein S25 that is encoded in the genome of mouse." [OMA:P62852, PRO:DNx] +def: "A small ribosomal subunit protein eS25 that is encoded in the genome of mouse." [OMA:P62852, PRO:DNx] comment: Category=organism-gene. +synonym: "40S ribosomal protein S25 (mouse)" EXACT [UniProtKB:P62852] synonym: "mRPS25" EXACT PRO-short-label [PRO:DNx] synonym: "Rps25" RELATED Gene-based [UniProtKB:P62852] xref: UniProtKB:P62852 -is_a: PR:000014268 ! 40S ribosomal protein S25 +is_a: PR:000014268 ! small ribosomal subunit protein eS25 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000014268 ! 40S ribosomal protein S25 +intersection_of: PR:000014268 ! small ribosomal subunit protein eS25 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1922867 ! Rps25 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P62888 -name: 60S ribosomal protein L30 (human) +name: large ribosomal subunit protein eL30 (human) namespace: protein -def: "A 60S ribosomal protein L30 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P62888] +def: "A large ribosomal subunit protein eL30 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P62888] comment: Category=organism-gene. +synonym: "60S ribosomal protein L30 (human)" EXACT [UniProtKB:P62888] synonym: "hRPL30" EXACT PRO-short-label [PRO:DNx] -synonym: "large ribosomal subunit protein eL30 (human)" EXACT [UniProtKB:P62888] synonym: "RPL30" RELATED Gene-based [UniProtKB:P62888] xref: Reactome:R-HSA-72452 "PR:P62888 located_in GO:0005829" xref: UniProtKB:P62888 -is_a: PR:000014213 ! 60S ribosomal protein L30 +is_a: PR:000014213 ! large ribosomal subunit protein eL30 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000014213 ! 60S ribosomal protein L30 +intersection_of: PR:000014213 ! large ribosomal subunit protein eL30 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P62889 -name: 60S ribosomal protein L30 (mouse) +name: large ribosomal subunit protein eL30 (mouse) namespace: protein -def: "A 60S ribosomal protein L30 that is encoded in the genome of mouse." [OMA:P62889, PRO:DNx] +def: "A large ribosomal subunit protein eL30 that is encoded in the genome of mouse." [OMA:P62889, PRO:DNx] comment: Category=organism-gene. +synonym: "60S ribosomal protein L30 (mouse)" EXACT [UniProtKB:P62889] synonym: "mRPL30" EXACT PRO-short-label [PRO:DNx] synonym: "Rpl30" RELATED Gene-based [UniProtKB:P62889] xref: UniProtKB:P62889 -is_a: PR:000014213 ! 60S ribosomal protein L30 +is_a: PR:000014213 ! large ribosomal subunit protein eL30 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000014213 ! 60S ribosomal protein L30 +intersection_of: PR:000014213 ! large ribosomal subunit protein eL30 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:98037 ! Rpl30 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P62913 -name: 60S ribosomal protein L11 (human) +name: large ribosomal subunit protein uL5 (human) namespace: protein -def: "A 60S ribosomal protein L11 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P62913] +def: "A eukaryotic-type large ribosomal subunit protein uL5 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P62913] comment: Category=organism-gene. +synonym: "60S ribosomal protein L11 (human)" EXACT [UniProtKB:P62913] synonym: "CLL-associated antigen KW-12 (human)" EXACT [UniProtKB:P62913] synonym: "hRPL11" EXACT PRO-short-label [PRO:DNx] -synonym: "large ribosomal subunit protein uL5 (human)" EXACT [UniProtKB:P62913] synonym: "RPL11" RELATED Gene-based [UniProtKB:P62913] xref: UniProtKB:P62913 -is_a: PR:000014190 ! 60S ribosomal protein L11 +is_a: PR:000014190 ! eukaryotic-type large ribosomal subunit protein uL5 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000014190 ! 60S ribosomal protein L11 +intersection_of: PR:000014190 ! eukaryotic-type large ribosomal subunit protein uL5 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -188924,27 +189628,29 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P62979 -name: ubiquitin-40S ribosomal protein S27a (human) +name: ubiquitin-ribosomal protein eS31 fusion protein (human) namespace: protein -def: "A ubiquitin-40S ribosomal protein S27a that is encoded in the genome of human." [PRO:DNx, UniProtKB:P62979] +def: "A ubiquitin-ribosomal protein eS31 fusion protein that is encoded in the genome of human." [PRO:DNx, UniProtKB:P62979] comment: Category=organism-gene. synonym: "hRPS27A" EXACT PRO-short-label [PRO:DNx] synonym: "RPS27A" RELATED Gene-based [UniProtKB:P62979] synonym: "UBA80" RELATED Gene-based [UniProtKB:P62979] synonym: "UBCEP1" RELATED Gene-based [UniProtKB:P62979] synonym: "ubiquitin carboxyl extension protein 80 (human)" EXACT [UniProtKB:P62979] +synonym: "ubiquitin-40S ribosomal protein S27a (human)" EXACT [PRO:DAN] +xref: Reactome:R-HSA-8853524 "PR:P62979 located_in GO:0005829" xref: UniProtKB:P62979 -is_a: PR:000014271 ! ubiquitin-40S ribosomal protein S27a +is_a: PR:000014271 ! ubiquitin-ribosomal protein eS31 fusion protein is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000014271 ! ubiquitin-40S ribosomal protein S27a +intersection_of: PR:000014271 ! ubiquitin-ribosomal protein eS31 fusion protein intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P62983 -name: ubiquitin-40S ribosomal protein S27a (mouse) +name: ubiquitin-ribosomal protein eS31 fusion protein (mouse) namespace: protein -def: "A ubiquitin-40S ribosomal protein S27a that is encoded in the genome of mouse." [OMA:P62983, PRO:DNx] +def: "A ubiquitin-ribosomal protein eS31 fusion protein that is encoded in the genome of mouse." [OMA:P62983, PRO:DNx] comment: Category=organism-gene. synonym: "mRPS27A" EXACT PRO-short-label [PRO:DNx] synonym: "Rps27a" RELATED Gene-based [UniProtKB:P62983] @@ -188952,36 +189658,36 @@ synonym: "Uba80" RELATED Gene-based [UniProtKB:P62983] synonym: "Ubcep1" RELATED Gene-based [UniProtKB:P62983] synonym: "ubiquitin carboxyl extension protein 80 (mouse)" EXACT [UniProtKB:P62983] xref: UniProtKB:P62983 -is_a: PR:000014271 ! ubiquitin-40S ribosomal protein S27a +is_a: PR:000014271 ! ubiquitin-ribosomal protein eS31 fusion protein is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000014271 ! ubiquitin-40S ribosomal protein S27a +intersection_of: PR:000014271 ! ubiquitin-ribosomal protein eS31 fusion protein intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1925544 ! Rps27a (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P62984 -name: ubiquitin-60S ribosomal protein L40 (mouse) +name: ubiquitin-ribosomal protein eL40 fusion protein (mouse) namespace: protein -def: "A ubiquitin-60S ribosomal protein L40 that is encoded in the genome of mouse." [OMA:P62984, PRO:DNx] +def: "A ubiquitin-ribosomal protein eL40 fusion protein that is encoded in the genome of mouse." [OMA:P62984, PRO:DNx] comment: Category=organism-gene. synonym: "mUBA52" EXACT PRO-short-label [PRO:DNx] synonym: "Uba52" RELATED Gene-based [UniProtKB:P62984] synonym: "Ubcep2" RELATED Gene-based [UniProtKB:P62984] synonym: "ubiquitin A-52 residue ribosomal protein fusion product 1 (mouse)" EXACT [UniProtKB:P62984] xref: UniProtKB:P62984 -is_a: PR:000016954 ! ubiquitin-60S ribosomal protein L40 +is_a: PR:000016954 ! ubiquitin-ribosomal protein eL40 fusion protein is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000016954 ! ubiquitin-60S ribosomal protein L40 +intersection_of: PR:000016954 ! ubiquitin-ribosomal protein eL40 fusion protein intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:98887 ! Uba52 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P62987 -name: ubiquitin-60S ribosomal protein L40 (human) +name: ubiquitin-ribosomal protein eL40 fusion protein (human) namespace: protein -def: "A ubiquitin-60S ribosomal protein L40 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P62987] +def: "A ubiquitin-ribosomal protein eL40 fusion protein that is encoded in the genome of human." [PRO:DNx, UniProtKB:P62987] comment: Category=organism-gene. synonym: "CEP52 (human)" EXACT [UniProtKB:P62987] synonym: "hUBA52" EXACT PRO-short-label [PRO:DNx] @@ -188990,9 +189696,9 @@ synonym: "UBCEP2" RELATED Gene-based [UniProtKB:P62987] synonym: "ubiquitin A-52 residue ribosomal protein fusion product 1 (human)" EXACT [UniProtKB:P62987] xref: Reactome:R-HSA-8853517 "PR:P62987 located_in GO:0005829" xref: UniProtKB:P62987 -is_a: PR:000016954 ! ubiquitin-60S ribosomal protein L40 +is_a: PR:000016954 ! ubiquitin-ribosomal protein eL40 fusion protein is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000016954 ! ubiquitin-60S ribosomal protein L40 +intersection_of: PR:000016954 ! ubiquitin-ribosomal protein eL40 fusion protein intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -189118,8 +189824,9 @@ namespace: protein def: "A paired mesoderm homeobox protein 1 that is encoded in the genome of mouse." [OMA:P63013, PRO:DNx] comment: Category=organism-gene. synonym: "homeobox protein K-2 (mouse)" EXACT [UniProtKB:P63013] -synonym: "homeobox protein mHox (mouse)" EXACT [UniProtKB:P63013] +synonym: "MHox (mouse)" EXACT [UniProtKB:P63013] synonym: "mPRRX1" EXACT PRO-short-label [PRO:DNx] +synonym: "muscle homeobox protein (mouse)" EXACT [UniProtKB:P63013] synonym: "paired-related homeobox protein 1 (mouse)" EXACT [UniProtKB:P63013] synonym: "Pmx" RELATED Gene-based [UniProtKB:P63013] synonym: "Pmx1" RELATED Gene-based [UniProtKB:P63013] @@ -189453,6 +190160,7 @@ synonym: "HR6B (human)" EXACT [UniProtKB:P63146] synonym: "hUBE2B" EXACT PRO-short-label [PRO:DNx] synonym: "RAD6 homolog B (human)" EXACT [UniProtKB:P63146] synonym: "RAD6B" RELATED Gene-based [UniProtKB:P63146] +synonym: "UBCH1" RELATED Gene-based [UniProtKB:P63146] synonym: "UBE2B" RELATED Gene-based [UniProtKB:P63146] synonym: "ubiquitin carrier protein B (human)" EXACT [UniProtKB:P63146] synonym: "ubiquitin-conjugating enzyme E2-17 kDa (human)" EXACT [UniProtKB:P63146] @@ -189567,17 +190275,17 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P63173 -name: 60S ribosomal protein L38 (human) +name: large ribosomal subunit protein eL38 (human) namespace: protein -def: "A 60S ribosomal protein L38 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P63173] +def: "A large ribosomal subunit protein eL38 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P63173] comment: Category=organism-gene. +synonym: "60S ribosomal protein L38 (human)" EXACT [UniProtKB:P63173] synonym: "hRPL38" EXACT PRO-short-label [PRO:DNx] -synonym: "large ribosomal subunit protein eL38 (human)" EXACT [UniProtKB:P63173] synonym: "RPL38" RELATED Gene-based [UniProtKB:P63173] xref: UniProtKB:P63173 -is_a: PR:000014224 ! 60S ribosomal protein L38 +is_a: PR:000014224 ! large ribosomal subunit protein eL38 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000014224 ! 60S ribosomal protein L38 +intersection_of: PR:000014224 ! large ribosomal subunit protein eL38 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -189680,9 +190388,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P63244 -name: receptor of activated protein C kinase 1 (human) +name: small ribosomal subunit protein RACK1 (human) namespace: protein -def: "A receptor of activated protein C kinase 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P63244] +def: "A small ribosomal subunit protein RACK1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:P63244] comment: Category=organism-gene. synonym: "cell proliferation-inducing gene 21 protein (human)" EXACT [UniProtKB:P63244] synonym: "GNB2L1" RELATED Gene-based [UniProtKB:P63244] @@ -189694,30 +190402,31 @@ synonym: "human lung cancer oncogene 7 protein" EXACT [UniProtKB:P63244] synonym: "PIG21" RELATED Gene-based [UniProtKB:P63244] synonym: "RACK1" RELATED Gene-based [UniProtKB:P63244] synonym: "receptor for activated C kinase (human)" EXACT [UniProtKB:P63244] -synonym: "small ribosomal subunit protein RACK1 (human)" EXACT [UniProtKB:P63244] +synonym: "receptor of activated protein C kinase 1 (human)" EXACT [UniProtKB:P63244] xref: UniProtKB:P63244 -is_a: PR:000008098 ! receptor of activated protein C kinase 1 +is_a: PR:000008098 ! small ribosomal subunit protein RACK1 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000008098 ! receptor of activated protein C kinase 1 +intersection_of: PR:000008098 ! small ribosomal subunit protein RACK1 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P63247 -name: receptor of activated protein C kinase 1 (chicken) +name: small ribosomal subunit protein RACK1 (chicken) namespace: protein -def: "A receptor of activated protein C kinase 1 that is encoded in the genome of chicken." [OMA:P63247, PANTHER:PTHR19868\:SF0, PRO:DNx] +def: "A small ribosomal subunit protein RACK1 that is encoded in the genome of chicken." [OMA:P63247, PRO:DNx] comment: Category=organism-gene. synonym: "chick-RACK1" EXACT PRO-short-label [PRO:DNx] synonym: "GNB2L1" RELATED Gene-based [UniProtKB:P63247] synonym: "guanine nucleotide-binding protein subunit beta-like protein 12.3 (chicken)" EXACT [UniProtKB:P63247] synonym: "RACK1" RELATED Gene-based [UniProtKB:P63247] synonym: "receptor for activated C kinase (chicken)" EXACT [UniProtKB:P63247] +synonym: "receptor of activated protein C kinase 1 (chicken)" EXACT [UniProtKB:P63247] synonym: "receptor of activated protein kinase C 1 (chicken)" EXACT [UniProtKB:P63247] xref: UniProtKB:P63247 -is_a: PR:000008098 ! receptor of activated protein C kinase 1 +is_a: PR:000008098 ! small ribosomal subunit protein RACK1 is_a: PR:000029063 ! Gallus gallus protein -intersection_of: PR:000008098 ! receptor of activated protein C kinase 1 +intersection_of: PR:000008098 ! small ribosomal subunit protein RACK1 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/417044 ! RACK1 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus @@ -189798,16 +190507,17 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P63323 -name: 40S ribosomal protein S12 (mouse) +name: small ribosomal subunit protein eS12 (mouse) namespace: protein -def: "A 40S ribosomal protein S12 that is encoded in the genome of mouse." [OMA:P63323, PRO:DNx] +def: "A small ribosomal subunit protein eS12 that is encoded in the genome of mouse." [OMA:P63323, PRO:DNx] comment: Category=organism-gene. +synonym: "40S ribosomal protein S12 (mouse)" EXACT [UniProtKB:P63323] synonym: "mRPS12" EXACT PRO-short-label [PRO:DNx] synonym: "Rps12" RELATED Gene-based [UniProtKB:P63323] xref: UniProtKB:P63323 -is_a: PR:000014253 ! 40S ribosomal protein S12 +is_a: PR:000014253 ! small ribosomal subunit protein eS12 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000014253 ! 40S ribosomal protein S12 +intersection_of: PR:000014253 ! small ribosomal subunit protein eS12 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:98105 ! Rps12 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -189880,16 +190590,17 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P67883 -name: 60S ribosomal protein L30 (chicken) +name: large ribosomal subunit protein eL30 (chicken) namespace: protein -def: "A 60S ribosomal protein L30 that is encoded in the genome of chicken." [OMA:P67883, PANTHER:PTHR11449\:SF1, PRO:DNx] +def: "A large ribosomal subunit protein eL30 that is encoded in the genome of chicken." [OMA:P67883, PRO:DNx] comment: Category=organism-gene. +synonym: "60S ribosomal protein L30 (chicken)" EXACT [UniProtKB:P67883] synonym: "chick-RPL30" EXACT PRO-short-label [PRO:DNx] synonym: "RPL30" RELATED Gene-based [UniProtKB:P67883] xref: UniProtKB:P67883 -is_a: PR:000014213 ! 60S ribosomal protein L30 +is_a: PR:000014213 ! large ribosomal subunit protein eL30 is_a: PR:000029063 ! Gallus gallus protein -intersection_of: PR:000014213 ! 60S ribosomal protein L30 +intersection_of: PR:000014213 ! large ribosomal subunit protein eL30 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/425416 ! RPL30 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus @@ -189898,7 +190609,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P67964 name: vascular endothelial growth factor A (chicken) namespace: protein -def: "A vascular endothelial growth factor A that is encoded in the genome of chicken." [PANTHER:PTHR12025\:SF5, PRO:DNx] +def: "A vascular endothelial growth factor A, long form that is encoded in the genome of chicken." [OMA:P67964, PRO:DNx] comment: Category=organism-gene. synonym: "chick-VEGFA" EXACT PRO-short-label [PRO:DNx] synonym: "vascular permeability factor (chicken)" EXACT [UniProtKB:P67964] @@ -189907,9 +190618,9 @@ synonym: "VEGF-A (chicken)" EXACT [UniProtKB:P67964] synonym: "VEGFA" RELATED Gene-based [UniProtKB:P67964] synonym: "VPF (chicken)" EXACT [UniProtKB:P67964] xref: UniProtKB:P67964 -is_a: PR:000017284 ! vascular endothelial growth factor A +is_a: PR:000017284 ! vascular endothelial growth factor A, long form is_a: PR:000029063 ! Gallus gallus protein -intersection_of: PR:000017284 ! vascular endothelial growth factor A +intersection_of: PR:000017284 ! vascular endothelial growth factor A, long form intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=7830 ! VEGFA (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus @@ -189932,9 +190643,9 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] id: PR:P68040 -name: receptor of activated protein C kinase 1 (mouse) +name: small ribosomal subunit protein RACK1 (mouse) namespace: protein -def: "A receptor of activated protein C kinase 1 that is encoded in the genome of mouse." [OMA:P68040, PRO:DNx] +def: "A small ribosomal subunit protein RACK1 that is encoded in the genome of mouse." [OMA:P68040, PRO:DNx] comment: Category=organism-gene. synonym: "12-3 (mouse)" EXACT [UniProtKB:P68040] synonym: "Gnb2-rs1" RELATED Gene-based [UniProtKB:P68040] @@ -189944,11 +190655,12 @@ synonym: "mRACK1" EXACT PRO-short-label [PRO:DNx] synonym: "p205 (mouse)" BROAD [UniProtKB:P68040] synonym: "Rack1" RELATED Gene-based [UniProtKB:P68040] synonym: "receptor for activated C kinase (mouse)" EXACT [UniProtKB:P68040] +synonym: "receptor of activated protein C kinase 1 (mouse)" EXACT [UniProtKB:P68040] synonym: "receptor of activated protein kinase C 1 (mouse)" EXACT [UniProtKB:P68040] xref: UniProtKB:P68040 -is_a: PR:000008098 ! receptor of activated protein C kinase 1 +is_a: PR:000008098 ! small ribosomal subunit protein RACK1 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000008098 ! receptor of activated protein C kinase 1 +intersection_of: PR:000008098 ! small ribosomal subunit protein RACK1 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:101849 ! Rack1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -190031,7 +190743,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P68259 name: pro-glucagon (chicken) namespace: protein -def: "A pro-glucagon that is encoded in the genome of chicken." [OMA:P68259, PANTHER:PTHR11418\:SF0, PRO:DNx] +def: "A pro-glucagon that is encoded in the genome of chicken." [OMA:P68259, PRO:DNx] comment: Category=organism-gene. synonym: "chick-GCG" EXACT PRO-short-label [PRO:DNx] synonym: "GCG" RELATED Gene-based [UniProtKB:P68259] @@ -190047,7 +190759,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P68306 name: thyroid hormone receptor beta (chicken) namespace: protein -def: "A thyroid hormone receptor beta that is encoded in the genome of chicken." [OMA:P68306, PANTHER:PTHR24082\:SF214, PRO:DNx] +def: "A thyroid hormone receptor beta that is encoded in the genome of chicken." [OMA:P68306, PRO:DNx] comment: Category=organism-gene. synonym: "C-ERBA-BETA" RELATED Gene-based [UniProtKB:P68306] synonym: "chick-THRB" EXACT PRO-short-label [PRO:DNx] @@ -190607,9 +191319,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P70313 -name: nitric oxide synthase, endothelial (mouse) +name: nitric oxide synthase 3 (mouse) namespace: protein -def: "A nitric oxide synthase, endothelial that is encoded in the genome of mouse." [OMA:P70313, PRO:DNx] +def: "A nitric oxide synthase 3 that is encoded in the genome of mouse." [OMA:P70313, PRO:DNx] comment: Category=organism-gene. synonym: "cNOS (mouse)" EXACT [UniProtKB:P70313] synonym: "constitutive NOS (mouse)" RELATED [UniProtKB:P70313] @@ -190618,13 +191330,14 @@ synonym: "Ecnos" RELATED Gene-based [UniProtKB:P70313] synonym: "endothelial NOS (mouse)" EXACT [UniProtKB:P70313] synonym: "eNOS (mouse)" EXACT [UniProtKB:P70313] synonym: "mNOS3" EXACT PRO-short-label [PRO:DNx] +synonym: "nitric oxide synthase, endothelial (mouse)" EXACT [UniProtKB:P70313] synonym: "NOS type III (mouse)" EXACT [UniProtKB:P70313] synonym: "Nos3" RELATED Gene-based [UniProtKB:P70313] synonym: "NOSIII (mouse)" EXACT [UniProtKB:P70313] xref: UniProtKB:P70313 -is_a: PR:000011328 ! nitric oxide synthase, endothelial +is_a: PR:000011328 ! nitric oxide synthase 3 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000011328 ! nitric oxide synthase, endothelial +intersection_of: PR:000011328 ! nitric oxide synthase 3 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:97362 ! Nos3 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -191063,7 +191776,7 @@ def: "A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 that is encoded in the g comment: Category=organism-gene. synonym: "EBP50 (mouse)" EXACT [UniProtKB:P70441] synonym: "ezrin-radixin-moesin-binding phosphoprotein 50 (mouse)" EXACT [UniProtKB:P70441] -synonym: "mSLC9A3R1" EXACT PRO-short-label [PRO:DNx] +synonym: "mNHERF1" EXACT PRO-short-label [PRO:DNx] synonym: "Nherf" RELATED Gene-based [UniProtKB:P70441] synonym: "NHERF-1 (mouse)" EXACT [UniProtKB:P70441] synonym: "Nherf1" RELATED Gene-based [UniProtKB:P70441] @@ -191328,7 +192041,7 @@ is_a: PR:000006015 ! CTP synthase 1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000006015 ! CTP synthase 1 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1858304 ! Ctps (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1858304 ! Ctps1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -191895,7 +192608,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P79764 name: glutaredoxin-1 (chicken) namespace: protein -def: "A glutaredoxin-1 that is encoded in the genome of chicken." [OMA:P79764, PANTHER:PTHR10168\:SF46, PRO:DNx] +def: "A glutaredoxin-1 that is encoded in the genome of chicken." [OMA:P79764, PRO:DNx] comment: Category=organism-gene. synonym: "chick-GLRX" EXACT PRO-short-label [PRO:DNx] synonym: "GLRX" RELATED Gene-based [UniProtKB:P79764] @@ -191914,7 +192627,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P79769 name: translin (chicken) namespace: protein -def: "A translin that is encoded in the genome of chicken." [PANTHER:PTHR10741\:SF2, PRO:DNx] +def: "A translin that is encoded in the genome of chicken." [OMA:P79769, PRO:DNx] comment: Category=organism-gene. synonym: "C3PO (chicken)" EXACT [UniProtKB:P79769] synonym: "chick-TSN" EXACT PRO-short-label [PRO:DNx] @@ -191930,18 +192643,18 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] id: PR:P79781 -name: ubiquitin-40S ribosomal protein S27a (chicken) +name: ubiquitin-ribosomal protein eS31 fusion protein (chicken) namespace: protein -def: "A ubiquitin-40S ribosomal protein S27a that is encoded in the genome of chicken." [OMA:P79781, PRO:DNx] +def: "A ubiquitin-ribosomal protein eS31 fusion protein that is encoded in the genome of chicken." [OMA:P79781, PRO:DNx] comment: Category=organism-gene. synonym: "chick-RPS27A" EXACT PRO-short-label [PRO:DNx] synonym: "RPS27A" RELATED Gene-based [UniProtKB:P79781] synonym: "UBA80" RELATED Gene-based [UniProtKB:P79781] synonym: "ubiquitin carboxyl extension protein 80 (chicken)" EXACT [UniProtKB:P79781] xref: UniProtKB:P79781 -is_a: PR:000014271 ! ubiquitin-40S ribosomal protein S27a +is_a: PR:000014271 ! ubiquitin-ribosomal protein eS31 fusion protein is_a: PR:000029063 ! Gallus gallus protein -intersection_of: PR:000014271 ! ubiquitin-40S ribosomal protein S27a +intersection_of: PR:000014271 ! ubiquitin-ribosomal protein eS31 fusion protein intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/395796 ! RPS27A (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus @@ -191950,7 +192663,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P79880 name: guanylyl cyclase-activating protein 1 (chicken) namespace: protein -def: "A guanylyl cyclase-activating protein 1 that is encoded in the genome of chicken." [OMA:P79880, PANTHER:PTHR23055\:SF13, PRO:DNx] +def: "A guanylyl cyclase-activating protein 1 that is encoded in the genome of chicken." [OMA:P79880, PRO:DNx] comment: Category=organism-gene. synonym: "chick-GUCA1A" EXACT PRO-short-label [PRO:DNx] synonym: "GCAP 1 (chicken)" EXACT [UniProtKB:P79880] @@ -191969,7 +192682,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P79881 name: guanylyl cyclase-activating protein 2 (chicken) namespace: protein -def: "A guanylyl cyclase-activating protein 2 that is encoded in the genome of chicken." [OMA:P79881, PANTHER:PTHR23055\:SF11, PRO:DNx] +def: "A guanylyl cyclase-activating protein 2 that is encoded in the genome of chicken." [OMA:P79881, PRO:DNx] comment: Category=organism-gene. synonym: "chick-GUCA1B" EXACT PRO-short-label [PRO:DNx] synonym: "GCAP 2 (chicken)" EXACT [UniProtKB:P79881] @@ -191988,7 +192701,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P79995 name: cadherin-10 (chicken) namespace: protein -def: "A cadherin-10 that is encoded in the genome of chicken." [PANTHER:PTHR24027\:SF110, PRO:DNx] +def: "A cadherin-10 that is encoded in the genome of chicken." [OMA:P79995, PRO:DNx] comment: Category=organism-gene. synonym: "CDH10" RELATED Gene-based [UniProtKB:P79995] synonym: "chick-CDH10" EXACT PRO-short-label [PRO:DNx] @@ -192004,7 +192717,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:P80026 name: parvalbumin, muscle (chicken) namespace: protein -def: "A parvalbumin alpha that is encoded in the genome of chicken." [PANTHER:PTHR11653\:SF0, PRO:DNx] +def: "A parvalbumin alpha that is encoded in the genome of chicken." [OMA:P80026, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PVALB" EXACT PRO-short-label [PRO:DNx] synonym: "PVALB" RELATED Gene-based [UniProtKB:P80026] @@ -192184,7 +192897,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P80566 name: superoxide dismutase [Cu-Zn] (chicken) namespace: protein -def: "A superoxide dismutase [Cu-Zn] that is encoded in the genome of chicken." [PANTHER:PTHR10003\:SF11, PRO:DNx] +def: "A superoxide dismutase [Cu-Zn] that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-SOD1" EXACT PRO-short-label [PRO:DNx] synonym: "SOD1" RELATED Gene-based [UniProtKB:P80566] @@ -192436,7 +193149,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:P83038 name: histone deacetylase 4 (chicken) namespace: protein -def: "A histone deacetylase 4 that is encoded in the genome of chicken." [OMA:P83038, PANTHER:PTHR10625\:SF21, PRO:DNx] +def: "A histone deacetylase 4 that is encoded in the genome of chicken." [OMA:P83038, PRO:DNx] comment: Category=organism-gene. synonym: "chick-HDAC4" EXACT PRO-short-label [PRO:DNx] synonym: "HD4 (chicken)" EXACT [UniProtKB:P83038] @@ -192745,16 +193458,17 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:P84175 -name: 40S ribosomal protein S12 (chicken) +name: small ribosomal subunit protein eS12 (chicken) namespace: protein -def: "A 40S ribosomal protein S12 that is encoded in the genome of chicken." [OMA:P84175, PANTHER:PTHR11843\:SF0, PRO:DNx] +def: "A small ribosomal subunit protein eS12 that is encoded in the genome of chicken." [OMA:P84175, PRO:DNx] comment: Category=organism-gene. +synonym: "40S ribosomal protein S12 (chicken)" EXACT [UniProtKB:P84175] synonym: "chick-RPS12" EXACT PRO-short-label [PRO:DNx] synonym: "RPS12" RELATED Gene-based [UniProtKB:P84175] xref: UniProtKB:P84175 -is_a: PR:000014253 ! 40S ribosomal protein S12 +is_a: PR:000014253 ! small ribosomal subunit protein eS12 is_a: PR:000029063 ! Gallus gallus protein -intersection_of: PR:000014253 ! 40S ribosomal protein S12 +intersection_of: PR:000014253 ! small ribosomal subunit protein eS12 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/421698 ! RPS12 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus @@ -192780,7 +193494,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:P87362 name: bleomycin hydrolase (chicken) namespace: protein -def: "A bleomycin hydrolase that is encoded in the genome of chicken." [OMA:P87362, PANTHER:PTHR10363\:SF2, PRO:DNx] +def: "A bleomycin hydrolase that is encoded in the genome of chicken." [OMA:P87362, PRO:DNx] comment: Category=organism-gene. synonym: "aminopeptidase H (chicken)" EXACT [UniProtKB:P87362] synonym: "BH (chicken)" EXACT [UniProtKB:P87362] @@ -192967,18 +193681,19 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P97351 -name: 40S ribosomal protein S3a (mouse) +name: small ribosomal subunit protein eS1 (mouse) namespace: protein -def: "A 40S ribosomal protein S3a that is encoded in the genome of mouse." [OMA:P97351, PRO:DNx] +def: "A small ribosomal subunit protein eS1 that is encoded in the genome of mouse." [OMA:P97351, PRO:DNx] comment: Category=organism-gene. +synonym: "40S ribosomal protein S3a (mouse)" EXACT [UniProtKB:P97351] synonym: "mRPS3A" EXACT PRO-short-label [PRO:DNx] synonym: "protein TU-11 (mouse)" EXACT [UniProtKB:P97351] synonym: "Rps3a" RELATED Gene-based [UniProtKB:P97351] synonym: "Rps3a1" RELATED Gene-based [UniProtKB:P97351] xref: UniProtKB:P97351 -is_a: PR:000014276 ! 40S ribosomal protein S3a +is_a: PR:000014276 ! small ribosomal subunit protein eS1 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000014276 ! 40S ribosomal protein S3a +intersection_of: PR:000014276 ! small ribosomal subunit protein eS1 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1202063 ! Rps3a1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -193441,7 +194156,7 @@ is_a: PR:000004461 ! ATP synthase-coupling factor 6, mitochondrial is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000004461 ! ATP synthase-coupling factor 6, mitochondrial intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:107777 ! Atp5j (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:107777 ! Atp5pf (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -194588,16 +195303,17 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:P99027 -name: 60S acidic ribosomal protein P2 (mouse) +name: large ribosomal subunit protein P2 (mouse) namespace: protein -def: "A 60S acidic ribosomal protein P2 that is encoded in the genome of mouse." [PRO:DNx] +def: "A large ribosomal subunit protein P2 that is encoded in the genome of mouse." [PRO:DNx] comment: Category=organism-gene. +synonym: "60S acidic ribosomal protein P2 (mouse)" EXACT [UniProtKB:P99027] synonym: "mRPLP2" EXACT PRO-short-label [PRO:DNx] synonym: "Rplp2" RELATED Gene-based [UniProtKB:P99027] xref: UniProtKB:P99027 -is_a: PR:000014239 ! 60S acidic ribosomal protein P2 +is_a: PR:000014239 ! large ribosomal subunit protein P2 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000014239 ! 60S acidic ribosomal protein P2 +intersection_of: PR:000014239 ! large ribosomal subunit protein P2 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1914436 ! Rplp2 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -195077,20 +195793,20 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q00731 -name: vascular endothelial growth factor A (mouse) +name: vascular endothelial growth factor A, long form (mouse) namespace: protein -def: "A vascular endothelial growth factor A that is encoded in the genome of mouse." [OMA:Q00731, PRO:DNx] +def: "A vascular endothelial growth factor A, long form that is encoded in the genome of mouse." [OMA:Q00731, PRO:DNx] comment: Category=organism-gene. +synonym: "L-VEGF (mouse)" EXACT [UniProtKB:Q00731] synonym: "mVEGFA" EXACT PRO-short-label [PRO:DNx] synonym: "vascular permeability factor (mouse)" EXACT [UniProtKB:Q00731] synonym: "Vegf" RELATED Gene-based [UniProtKB:Q00731] -synonym: "VEGF-A (mouse)" EXACT [UniProtKB:Q00731] synonym: "Vegfa" RELATED Gene-based [UniProtKB:Q00731] synonym: "VPF (mouse)" EXACT [UniProtKB:Q00731] xref: UniProtKB:Q00731 -is_a: PR:000017284 ! vascular endothelial growth factor A +is_a: PR:000017284 ! vascular endothelial growth factor A, long form is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000017284 ! vascular endothelial growth factor A +intersection_of: PR:000017284 ! vascular endothelial growth factor A, long form intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:103178 ! Vegfa (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -195913,6 +196629,25 @@ intersection_of: PR:000016039 ! transgelin intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: PR:Q02011 +name: ciliary neurotrophic factor (chicken) +namespace: protein +def: "A ciliary neurotrophic factor that is encoded in the genome of chicken." [OMA:Q02011, PRO:DNx] +comment: Category=organism-gene. +synonym: "chick-CNTF" EXACT PRO-short-label [PRO:DNx] +synonym: "CNF" RELATED Gene-based [UniProtKB:Q02011] +synonym: "CNTF" RELATED Gene-based [UniProtKB:Q02011] +synonym: "GPA" RELATED Gene-based [UniProtKB:Q02011] +synonym: "growth-promoting activity (chicken)" EXACT [UniProtKB:Q02011] +xref: UniProtKB:Q02011 +is_a: PR:000005663 ! ciliary neurotrophic factor +is_a: PR:000029063 ! Gallus gallus protein +intersection_of: PR:000005663 ! ciliary neurotrophic factor +intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus +relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/396488 ! CNTF (chicken) +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: PR:Q02045 name: myosin light chain 5 (human) @@ -196034,9 +196769,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q02252 -name: methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (human) +name: methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial (human) namespace: protein -def: "A methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q02252] +def: "A methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q02252] comment: Category=organism-gene. synonym: "aldehyde dehydrogenase family 6 member A1 (human)" EXACT [UniProtKB:Q02252] synonym: "ALDH6A1" RELATED Gene-based [UniProtKB:Q02252] @@ -196044,9 +196779,9 @@ synonym: "hALDH6A1" EXACT PRO-short-label [PRO:DNx] synonym: "malonate-semialdehyde dehydrogenase [acylating] (human)" EXACT [UniProtKB:Q02252] synonym: "MMSDH" RELATED Gene-based [UniProtKB:Q02252] xref: UniProtKB:Q02252 -is_a: PR:000003930 ! methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial +is_a: PR:000003930 ! methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000003930 ! methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial +intersection_of: PR:000003930 ! methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -196372,6 +197107,7 @@ synonym: "homeobox protein HEX (human)" EXACT [UniProtKB:Q03014] synonym: "homeobox protein PRH (human)" EXACT [UniProtKB:Q03014] synonym: "PRH" RELATED Gene-based [UniProtKB:Q03014] synonym: "PRHX" RELATED Gene-based [UniProtKB:Q03014] +synonym: "proline-rich homeodomain protein (human)" EXACT [UniProtKB:Q03014] xref: UniProtKB:Q03014 is_a: PR:000008540 ! hematopoietically-expressed homeobox protein HHEX is_a: PR:000029067 ! Homo sapiens protein @@ -196894,7 +197630,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q04584 name: zyxin (chicken) namespace: protein -def: "A zyxin that is encoded in the genome of chicken." [PANTHER:PTHR24212\:SF61, PRO:DNx] +def: "A zyxin that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-ZYX" EXACT PRO-short-label [PRO:DNx] synonym: "ZYX" RELATED Gene-based [UniProtKB:Q04584] @@ -197141,7 +197877,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q04861 name: nuclear factor NF-kappa-B p105 subunit (chicken) namespace: protein -def: "A nuclear factor NF-kappa-B p105 subunit that is encoded in the genome of chicken." [OMA:Q04861, PANTHER:PTHR24169\:SF4, PRO:DNx] +def: "A nuclear factor NF-kappa-B p105 subunit that is encoded in the genome of chicken." [OMA:Q04861, PRO:DNx] comment: Category=organism-gene. synonym: "chick-NFKB1" EXACT PRO-short-label [PRO:DNx] synonym: "NFKB1" RELATED Gene-based [UniProtKB:Q04861] @@ -197249,7 +197985,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q04982 name: serine/threonine-protein kinase B-raf (chicken) namespace: protein -def: "A B-Raf proto-oncogene serine/threonine-protein kinase that is encoded in the genome of chicken." [OMA:Q04982, PANTHER:PTHR23257\:SF41, PRO:DNx] +def: "A B-Raf proto-oncogene serine/threonine-protein kinase that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "BRAF" RELATED Gene-based [UniProtKB:Q04982] synonym: "chick-BRAF" EXACT PRO-short-label [PRO:DNx] @@ -197426,6 +198162,8 @@ def: "A dynamin-1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q comment: Category=organism-gene. synonym: "DNM" RELATED Gene-based [UniProtKB:Q05193] synonym: "DNM1" RELATED Gene-based [UniProtKB:Q05193] +synonym: "dynamin (human)" EXACT [UniProtKB:Q05193] +synonym: "dynamin I (human)" EXACT [UniProtKB:Q05193] synonym: "hDNM1" EXACT PRO-short-label [PRO:DNx] xref: Reactome:R-HSA-177488 "PR:Q05193 located_in GO:0005886" xref: Reactome:R-HSA-196150 "PR:Q05193 located_in GO:0005765" @@ -197475,7 +198213,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q05437 name: paired mesoderm homeobox protein 1 (chicken) namespace: protein -def: "A paired mesoderm homeobox protein 1 that is encoded in the genome of chicken." [OMA:Q05437, PANTHER:PTHR24329\:SF87, PRO:DNx] +def: "A paired mesoderm homeobox protein 1 that is encoded in the genome of chicken." [OMA:Q05437, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PRRX1" EXACT PRO-short-label [PRO:DNx] synonym: "GMHOX (chicken)" EXACT [UniProtKB:Q05437] @@ -197521,7 +198259,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q05502 name: hematopoietically-expressed homeobox protein HHEX (chicken) namespace: protein -def: "A hematopoietically-expressed homeobox protein HHEX that is encoded in the genome of chicken." [PANTHER:PTHR24324\:SF134, PRO:DNx] +def: "A hematopoietically-expressed homeobox protein HHEX that is encoded in the genome of chicken." [OMA:Q05502, PRO:DNx] comment: Category=organism-gene. synonym: "chick-HHEX" EXACT PRO-short-label [PRO:DNx] synonym: "HHEX" RELATED Gene-based [UniProtKB:Q05502] @@ -198102,6 +198840,7 @@ def: "A paired box protein Pax-8 that is encoded in the genome of human." [PRO:D comment: Category=organism-gene. synonym: "hPAX8" EXACT PRO-short-label [PRO:DNx] synonym: "PAX8" RELATED Gene-based [UniProtKB:Q06710] +xref: Reactome:R-HSA-3968418 "PR:Q06710 located_in GO:0005654" xref: UniProtKB:Q06710 is_a: PR:000012320 ! paired box protein Pax-8 is_a: PR:000029067 ! Homo sapiens protein @@ -198174,7 +198913,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q06A37 name: chromodomain-helicase-DNA-binding protein 7 (chicken) namespace: protein -def: "A chromodomain-helicase-DNA-binding protein 7 that is encoded in the genome of chicken." [PANTHER:PTHR10799\:SF215, PRO:DNx] +def: "A chromodomain-helicase-DNA-binding protein 7 that is encoded in the genome of chicken." [OMA:Q06A37, PRO:DNx] comment: Category=organism-gene. synonym: "ATP-dependent helicase CHD7 (chicken)" EXACT [UniProtKB:Q06A37] synonym: "CHD-7 (chicken)" EXACT [UniProtKB:Q06A37] @@ -198420,7 +199159,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q07460 name: eukaryotic translation initiation factor 5A-2 (chicken) namespace: protein -def: "A eukaryotic translation initiation factor 5A-2 that is encoded in the genome of chicken." [OMA:Q07460, PANTHER:PTHR11673\:SF2, PRO:DNx] +def: "A eukaryotic translation initiation factor 5A-2 that is encoded in the genome of chicken." [OMA:Q07460, PRO:DNx] comment: Category=organism-gene. synonym: "chick-EIF5A2" EXACT PRO-short-label [PRO:DNx] synonym: "eIF-4D (chicken)" RELATED [UniProtKB:Q07460] @@ -198460,7 +199199,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q07496 name: ephrin type-A receptor 4 (chicken) namespace: protein -def: "An ephrin type-A receptor 4 that is encoded in the genome of chicken." [OMA:Q07496, PANTHER:PTHR24416\:SF340, PRO:DNx] +def: "An ephrin type-A receptor 4 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "CEK8" RELATED Gene-based [UniProtKB:Q07496] synonym: "cEK8 (chicken)" EXACT [UniProtKB:Q07496] @@ -198518,22 +199257,23 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q07837 -name: neutral and basic amino acid transport protein rBAT (human) +name: amino acid transporter heavy chain SLC3A1 (human) namespace: protein -def: "A neutral and basic amino acid transport protein rBAT that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q07837] +def: "An amino acid transporter heavy chain SLC3A1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q07837] comment: Category=organism-gene. -synonym: "b(0,+)-type amino acid transport protein (human)" EXACT [UniProtKB:Q07837] +synonym: "b(0,+)-type amino acid transporter-related heavy chain (human)" EXACT [UniProtKB:Q07837] synonym: "D2h (human)" EXACT [UniProtKB:Q07837] synonym: "hSLC3A1" EXACT PRO-short-label [PRO:DNx] -synonym: "NBAT (human)" EXACT [UniProtKB:Q07837] -synonym: "RBAT" RELATED Gene-based [UniProtKB:Q07837] +synonym: "NBAT" RELATED Gene-based [UniProtKB:Q07837] +synonym: "neutral and basic amino acid transport protein (human)" EXACT [UniProtKB:Q07837] +synonym: "rBAT (human)" EXACT [UniProtKB:Q07837] synonym: "SLC3A1" RELATED Gene-based [UniProtKB:Q07837] synonym: "solute carrier family 3 member 1 (human)" EXACT [UniProtKB:Q07837] xref: Reactome:R-HSA-379428 "PR:Q07837 located_in GO:0005886" xref: UniProtKB:Q07837 -is_a: PR:000015137 ! neutral and basic amino acid transport protein rBAT +is_a: PR:000015137 ! amino acid transporter heavy chain SLC3A1 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000015137 ! neutral and basic amino acid transport protein rBAT +intersection_of: PR:000015137 ! amino acid transporter heavy chain SLC3A1 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -198795,7 +199535,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q08156 name: mast/stem cell growth factor receptor Kit (chicken) namespace: protein -def: "A mast/stem cell growth factor receptor that is encoded in the genome of chicken." [OMA:Q08156, PANTHER:PTHR24416\:SF238, PRO:DNx] +def: "A mast/stem cell growth factor receptor that is encoded in the genome of chicken." [OMA:Q08156, PRO:DNx] comment: Category=organism-gene. synonym: "chick-KIT" EXACT PRO-short-label [PRO:DNx] synonym: "KIT" RELATED Gene-based [UniProtKB:Q08156] @@ -198874,19 +199614,20 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q08493 -name: cAMP-specific 3',5'-cyclic phosphodiesterase 4C (human) +name: 3',5'-cyclic-AMP phosphodiesterase 4C (human) namespace: protein -def: "A cAMP-specific 3',5'-cyclic phosphodiesterase 4C that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q08493] +def: "A 3',5'-cyclic-AMP phosphodiesterase 4C that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q08493] comment: Category=organism-gene. +synonym: "cAMP-specific phosphodiesterase 4C (human)" EXACT [UniProtKB:Q08493] synonym: "DPDE1" RELATED Gene-based [UniProtKB:Q08493] synonym: "hPDE4C" EXACT PRO-short-label [PRO:DNx] synonym: "PDE21 (human)" EXACT [UniProtKB:Q08493] synonym: "PDE4C" RELATED Gene-based [UniProtKB:Q08493] xref: Reactome:R-HSA-52387 "PR:Q08493 located_in GO:0005829" xref: UniProtKB:Q08493 -is_a: PR:000012474 ! cAMP-specific 3',5'-cyclic phosphodiesterase 4C +is_a: PR:000012474 ! 3',5'-cyclic-AMP phosphodiesterase 4C is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000012474 ! cAMP-specific 3',5'-cyclic phosphodiesterase 4C +intersection_of: PR:000012474 ! 3',5'-cyclic-AMP phosphodiesterase 4C intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -199020,7 +199761,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q08705 name: transcriptional repressor CTCF (chicken) namespace: protein -def: "A transcriptional repressor CTCF that is encoded in the genome of chicken." [OMA:Q08705, PANTHER:PTHR24375\:SF448, PRO:DNx] +def: "A transcriptional repressor CTCF that is encoded in the genome of chicken." [OMA:Q08705, PRO:DNx] comment: Category=organism-gene. synonym: "11-zinc finger protein (chicken)" EXACT [UniProtKB:Q08705] synonym: "CCCTC-binding factor (chicken)" EXACT [UniProtKB:Q08705] @@ -199238,7 +199979,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q09108 name: kit ligand (chicken) namespace: protein -def: "A kit ligand that is encoded in the genome of chicken." [OMA:Q09108, PANTHER:PTHR11574\:SF0, PRO:DNx] +def: "A kit ligand that is encoded in the genome of chicken." [OMA:Q09108, PRO:DNx] comment: Category=organism-gene. synonym: "c-Kit ligand (chicken)" EXACT [UniProtKB:Q09108] synonym: "chick-KITLG" EXACT PRO-short-label [PRO:DNx] @@ -199672,7 +200413,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q0VBD0 name: integrin beta-8 (mouse) namespace: protein -def: "An integrin beta-8 that is encoded in the genome of mouse." [OMA:Q0VBD0, PANTHER:PTHR10082\:SF9, PRO:DNx] +def: "An integrin beta-8 that is encoded in the genome of mouse." [OMA:Q0VBD0, PRO:DNx] comment: Category=organism-gene. synonym: "Itgb8" RELATED Gene-based [UniProtKB:Q0VBD0] synonym: "mITGB8" EXACT PRO-short-label [PRO:DNx] @@ -199752,7 +200493,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q0VE82 name: copine-7 (mouse) namespace: protein -def: "A copine-7 that is encoded in the genome of mouse." [OMA:Q0VE82, PANTHER:PTHR10857\:SF6, PRO:DNx] +def: "A copine-7 that is encoded in the genome of mouse." [OMA:Q0VE82, PRO:DNx] comment: Category=organism-gene. synonym: "copine VII (mouse)" EXACT [UniProtKB:Q0VE82] synonym: "Cpne7" RELATED Gene-based [UniProtKB:Q0VE82] @@ -199769,7 +200510,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q0VEJ0 name: centrosomal protein of 76 kDa (mouse) namespace: protein -def: "A centrosomal protein of 76 kDa that is encoded in the genome of mouse." [OMA:Q0VEJ0, PANTHER:PTHR20837\:SF0, PRO:DNx] +def: "A centrosomal protein of 76 kDa that is encoded in the genome of mouse." [OMA:Q0VEJ0, PRO:DNx] comment: Category=organism-gene. synonym: "Cep76" RELATED Gene-based [UniProtKB:Q0VEJ0] synonym: "mCEP76" EXACT PRO-short-label [PRO:DNx] @@ -199801,7 +200542,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q0WYX8 name: MAM domain-containing glycosylphosphatidylinositol anchor protein 1 (chicken) namespace: protein -def: "A MAM domain-containing glycosylphosphatidylinositol anchor protein 1 that is encoded in the genome of chicken." [PANTHER:PTHR23282\:SF9, PRO:DNx] +def: "A MAM domain-containing glycosylphosphatidylinositol anchor protein 1 that is encoded in the genome of chicken." [OMA:Q0WYX8, PRO:DNx] comment: Category=organism-gene. synonym: "chick-MDGA1" EXACT PRO-short-label [PRO:DNx] synonym: "MDGA1" RELATED Gene-based [UniProtKB:Q0WYX8] @@ -199810,7 +200551,6 @@ is_a: PR:000010261 ! MAM domain-containing glycosylphosphatidylinositol anchor p is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000010261 ! MAM domain-containing glycosylphosphatidylinositol anchor protein 1 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/421431 ! MDGA1 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] @@ -199911,6 +200651,7 @@ synonym: "protein-UDP acetylgalactosaminyltransferase 1 (human)" EXACT [UniProtK synonym: "UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 1 (human)" EXACT [UniProtKB:Q10472] xref: Reactome:R-HSA-8849320 "PR:Q10472 located_in GO:0005789" xref: Reactome:R-HSA-913698 "PR:Q10472 located_in GO:0000139" +xref: Reactome:R-HSA-9682906 "PR:Q10472 located_in GO:0033116" xref: UniProtKB:Q10472 is_a: PR:000007818 ! polypeptide N-acetylgalactosaminyltransferase 1 is_a: PR:000029067 ! Homo sapiens protein @@ -200008,7 +200749,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q10751 name: angiotensin-converting enzyme (chicken) namespace: protein -def: "An angiotensin-converting enzyme that is encoded in the genome of chicken." [OMA:Q10751, PRO:DNx] +def: "An angiotensin-converting enzyme that is encoded in the genome of chicken." [PRO:WCB] comment: Category=organism-gene. synonym: "ACE" RELATED Gene-based [UniProtKB:Q10751] synonym: "chick-ACE" EXACT PRO-short-label [PRO:DNx] @@ -200271,6 +201012,7 @@ synonym: "BAH" RELATED Gene-based [UniProtKB:Q12797] synonym: "hASPH" EXACT PRO-short-label [PRO:DNx] synonym: "peptide-aspartate beta-dioxygenase (human)" EXACT [UniProtKB:Q12797] xref: Reactome:R-HSA-5490331 "PR:Q12797 located_in GO:0005789" +xref: Reactome:R-HSA-9631383 "PR:Q12797 located_in GO:0005788" xref: UniProtKB:Q12797 is_a: PR:000004380 ! aspartyl/asparaginyl beta-hydroxylase is_a: PR:000029067 ! Homo sapiens protein @@ -200482,6 +201224,8 @@ synonym: "nuclear factor associated with dsRNA (human)" EXACT [UniProtKB:Q12906] synonym: "nuclear factor of activated T-cells 90 kDa (human)" EXACT [UniProtKB:Q12906] synonym: "TCP80 (human)" EXACT [UniProtKB:Q12906] synonym: "translational control protein 80 (human)" EXACT [UniProtKB:Q12906] +xref: Reactome:R-HSA-450564 "PR:Q12906 located_in GO:0005829" +xref: Reactome:R-HSA-9760401 "PR:Q12906 located_in GO:0005654" xref: UniProtKB:Q12906 is_a: PR:000009008 ! interleukin enhancer-binding factor 3 is_a: PR:000029067 ! Homo sapiens protein @@ -200639,6 +201383,7 @@ synonym: "NIPP-1 (human)" EXACT [UniProtKB:Q12972] synonym: "NIPP1" RELATED Gene-based [UniProtKB:Q12972] synonym: "PPP1R8" RELATED Gene-based [UniProtKB:Q12972] synonym: "protein phosphatase 1 regulatory inhibitor subunit 8 (human)" EXACT [UniProtKB:Q12972] +xref: Reactome:R-HSA-9770253 "PR:Q12972 located_in GO:0005654" xref: UniProtKB:Q12972 is_a: PR:000013131 ! nuclear inhibitor of protein phosphatase 1 is_a: PR:000029067 ! Homo sapiens protein @@ -200938,22 +201683,22 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q13084 -name: 39S ribosomal protein L28, mitochondrial (human) +name: large ribosomal subunit protein bL28m (human) namespace: protein -def: "A 39S ribosomal protein L28, mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q13084] +def: "A large ribosomal subunit protein bL28m that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q13084] comment: Category=organism-gene. +synonym: "39S ribosomal protein L28, mitochondrial (human)" EXACT [UniProtKB:Q13084] synonym: "hMRPL28" EXACT PRO-short-label [PRO:DNx] synonym: "L28mt (human)" BROAD [UniProtKB:Q13084] synonym: "MAAT1" RELATED Gene-based [UniProtKB:Q13084] synonym: "melanoma antigen p15 (human)" EXACT [UniProtKB:Q13084] synonym: "melanoma-associated antigen recognized by T-lymphocytes (human)" EXACT [UniProtKB:Q13084] -synonym: "mitochondrial large ribosomal subunit protein bL28m (human)" EXACT [UniProtKB:Q13084] synonym: "MRP-L28 (human)" BROAD [UniProtKB:Q13084] synonym: "MRPL28" RELATED Gene-based [UniProtKB:Q13084] xref: UniProtKB:Q13084 -is_a: PR:000010589 ! 39S ribosomal protein L28, mitochondrial +is_a: PR:000010589 ! large ribosomal subunit protein bL28m is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000010589 ! 39S ribosomal protein L28, mitochondrial +intersection_of: PR:000010589 ! large ribosomal subunit protein bL28m intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -201014,6 +201759,7 @@ synonym: "IK factor (human)" EXACT [UniProtKB:Q13123] synonym: "protein RER (human)" EXACT [UniProtKB:Q13123] synonym: "RED" RELATED Gene-based [UniProtKB:Q13123] synonym: "RER" RELATED Gene-based [UniProtKB:Q13123] +xref: Reactome:R-HSA-9770239 "PR:Q13123 located_in GO:0005654" xref: UniProtKB:Q13123 is_a: PR:000008976 ! protein Red is_a: PR:000029067 ! Homo sapiens protein @@ -201186,6 +201932,27 @@ intersection_of: PR:000005084 ! chromobox protein homolog 3 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: PR:Q13190 +name: syntaxin-5 (human) +namespace: protein +def: "A syntaxin-5 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q13190] +comment: Category=organism-gene. +synonym: "hSTX5" EXACT PRO-short-label [PRO:DNx] +synonym: "STX5" RELATED Gene-based [UniProtKB:Q13190] +synonym: "STX5A" RELATED Gene-based [UniProtKB:Q13190] +xref: Reactome:R-HSA-5688157 "PR:Q13190 located_in GO:0033116" +xref: Reactome:R-HSA-5689474 "PR:Q13190 located_in GO:0005789" +xref: Reactome:R-HSA-5689838 "PR:Q13190 located_in GO:0012507" +xref: Reactome:R-HSA-6807771 "PR:Q13190 located_in GO:0000139" +xref: Reactome:R-HSA-9613991 "PR:Q13190 located_in GO:0005829" +xref: UniProtKB:Q13190 +is_a: PR:000015797 ! syntaxin-5 +is_a: PR:000029067 ! Homo sapiens protein +intersection_of: PR:000015797 ! syntaxin-5 +intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens + [Term] id: PR:Q13203 name: myosin-binding protein H (human) @@ -201415,6 +202182,7 @@ synonym: "hNMI" EXACT PRO-short-label [PRO:DNx] synonym: "N-myc and STAT interactor (human)" EXACT [UniProtKB:Q13287] synonym: "NMI" RELATED Gene-based [UniProtKB:Q13287] synonym: "Nmi (human)" EXACT [UniProtKB:Q13287] +xref: Reactome:R-HSA-9731022 "PR:Q13287 located_in GO:0005829" xref: UniProtKB:Q13287 is_a: PR:000011289 ! N-myc-interactor is_a: PR:000029067 ! Homo sapiens protein @@ -201646,6 +202414,7 @@ synonym: "PPIL2" RELATED Gene-based [UniProtKB:Q13356] synonym: "probable inactive peptidyl-prolyl cis-trans isomerase-like 2 (human)" EXACT [UniProtKB:Q13356] synonym: "rotamase PPIL2 (human)" EXACT [UniProtKB:Q13356] xref: Reactome:R-HSA-204475 "PR:Q13356 located_in GO:0005796" +xref: Reactome:R-HSA-9769562 "PR:Q13356 located_in GO:0005654" xref: UniProtKB:Q13356 is_a: PR:000013084 ! RING-type E3 ubiquitin-protein ligase PPIL2 is_a: PR:000029067 ! Homo sapiens protein @@ -201786,6 +202555,8 @@ synonym: "rotamase G (human)" EXACT [UniProtKB:Q13427] synonym: "SR-cyclophilin (human)" EXACT [UniProtKB:Q13427] synonym: "SR-cyp (human)" EXACT [UniProtKB:Q13427] synonym: "SRcyp (human)" EXACT [UniProtKB:Q13427] +xref: Reactome:R-HSA-9728768 "PR:Q13427 located_in GO:0005829" +xref: Reactome:R-HSA-9769592 "PR:Q13427 located_in GO:0005654" xref: UniProtKB:Q13427 is_a: PR:000013081 ! peptidyl-prolyl cis-trans isomerase G is_a: PR:000029067 ! Homo sapiens protein @@ -202660,6 +203431,7 @@ synonym: "hTNFAIP1" EXACT PRO-short-label [PRO:DNx] synonym: "protein B12 (human)" EXACT [UniProtKB:Q13829] synonym: "TNFAIP1" RELATED Gene-based [UniProtKB:Q13829] synonym: "tumor necrosis factor, alpha-induced protein 1, endothelial (human)" EXACT [UniProtKB:Q13829] +xref: Reactome:R-HSA-9696531 "PR:Q13829 located_in GO:0005829" xref: UniProtKB:Q13829 is_a: PR:000016472 ! BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 is_a: PR:000029067 ! Homo sapiens protein @@ -203305,7 +204077,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q14197 -name: peptidyl-tRNA hydrolase ICT1, mitochondrial (human) +name: large ribosomal subunit protein mL62 (human) namespace: protein def: "An immature colon carcinoma transcript 1 protein that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q14197] comment: Category=organism-gene. @@ -203316,9 +204088,9 @@ synonym: "DS1" RELATED Gene-based [UniProtKB:Q14197] synonym: "hMRPL58" EXACT PRO-short-label [PRO:DNx] synonym: "ICT1" RELATED Gene-based [UniProtKB:Q14197] synonym: "immature colon carcinoma transcript 1 protein (human)" EXACT [UniProtKB:Q14197] -synonym: "mitochondrial large ribosomal subunit protein mL62 (human)" EXACT [UniProtKB:Q14197] synonym: "MRP-L58 (human)" EXACT [UniProtKB:Q14197] synonym: "MRPL58" RELATED Gene-based [UniProtKB:Q14197] +synonym: "peptidyl-tRNA hydrolase ICT1, mitochondrial (human)" EXACT [UniProtKB:Q14197] xref: UniProtKB:Q14197 is_a: PR:000008885 ! immature colon carcinoma transcript 1 protein is_a: PR:000029067 ! Homo sapiens protein @@ -203370,19 +204142,19 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q14232 -name: translation initiation factor eIF-2B subunit alpha (human) +name: translation initiation factor eIF2B subunit alpha (human) namespace: protein -def: "A translation initiation factor eIF-2B subunit alpha that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q14232] +def: "A translation initiation factor eIF2B subunit alpha that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q14232] comment: Category=organism-gene. -synonym: "eIF-2B GDP-GTP exchange factor subunit alpha (human)" EXACT [UniProtKB:Q14232] +synonym: "eIF2B GDP-GTP exchange factor subunit alpha (human)" EXACT [UniProtKB:Q14232] synonym: "EIF2B1" RELATED Gene-based [UniProtKB:Q14232] synonym: "EIF2BA" RELATED Gene-based [UniProtKB:Q14232] synonym: "hEIF2B1" EXACT PRO-short-label [PRO:DNx] xref: Reactome:R-HSA-72517 "PR:Q14232 located_in GO:0005829" xref: UniProtKB:Q14232 -is_a: PR:000006962 ! translation initiation factor eIF-2B subunit alpha +is_a: PR:000006962 ! translation initiation factor eIF2B subunit alpha is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000006962 ! translation initiation factor eIF-2B subunit alpha +intersection_of: PR:000006962 ! translation initiation factor eIF2B subunit alpha intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -203863,6 +204635,7 @@ synonym: "DEAH box protein 8 (human)" EXACT [UniProtKB:Q14562] synonym: "DHX8" RELATED Gene-based [UniProtKB:Q14562] synonym: "hDHX8" EXACT PRO-short-label [PRO:DNx] synonym: "RNA helicase HRH1 (human)" EXACT [UniProtKB:Q14562] +xref: Reactome:R-HSA-5688092 "PR:Q14562 located_in GO:0005654" xref: UniProtKB:Q14562 is_a: PR:000006473 ! ATP-dependent RNA helicase DHX8 is_a: PR:000029067 ! Homo sapiens protein @@ -203991,6 +204764,7 @@ synonym: "hPLS1" EXACT PRO-short-label [PRO:DNx] synonym: "I-plastin (human)" EXACT [UniProtKB:Q14651] synonym: "intestine-specific plastin (human)" EXACT [UniProtKB:Q14651] synonym: "PLS1" RELATED Gene-based [UniProtKB:Q14651] +xref: Reactome:R-HSA-9662403 "PR:Q14651 located_in GO:0005829" xref: UniProtKB:Q14651 is_a: PR:000012882 ! plastin-1 is_a: PR:000029067 ! Homo sapiens protein @@ -204007,7 +204781,6 @@ comment: Category=organism-gene. synonym: "hIRF3" EXACT PRO-short-label [PRO:DNx] synonym: "IRF-3 (human)" EXACT [UniProtKB:Q14653] synonym: "IRF3" RELATED Gene-based [UniProtKB:Q14653] -xref: Reactome:R-HSA-166251 "PR:Q14653 located_in GO:0005829" xref: UniProtKB:Q14653 is_a: PR:000002045 ! interferon regulatory factor 3 is_a: PR:000029067 ! Homo sapiens protein @@ -204582,19 +205355,16 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q14AM7 name: HUWE1-associated protein modifying stress responses (mouse) namespace: protein -def: "A HUWE1-associated protein modifying stress responses that is encoded in the genome of mouse." [OMA:Q14AM7, PRO:DNx] +def: "A HUWE1-associated protein modifying stress responses 1 that is encoded in the genome of mouse." [OMA:Q14AM7, PRO:DNx] comment: Category=organism-gene. -synonym: "1810013L24Rik" RELATED Gene-based [UniProtKB:Q14AM7] synonym: "Hapstr1" RELATED Gene-based [UniProtKB:Q14AM7] synonym: "mHAPSTR1" EXACT PRO-short-label [PRO:DNx] -synonym: "Tapr1" RELATED Gene-based [UniProtKB:Q14AM7] -synonym: "telomere attrition and p53 response 1 protein (mouse)" EXACT [UniProtKB:Q14AM7] xref: UniProtKB:Q14AM7 is_a: PR:000029032 ! Mus musculus protein -is_a: PR:000059782 ! HUWE1-associated protein modifying stress responses -intersection_of: PR:000059782 ! HUWE1-associated protein modifying stress responses +is_a: PR:000059782 ! HUWE1-associated protein modifying stress responses 1 +intersection_of: PR:000059782 ! HUWE1-associated protein modifying stress responses 1 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1916303 ! 1810013L24Rik (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1916303 ! Hapstr1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -204660,7 +205430,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q14BT6 name: alpha-1,4-N-acetylglucosaminyltransferase (mouse) namespace: protein -def: "An alpha-1,4-N-acetylglucosaminyltransferase that is encoded in the genome of mouse." [OMA:Q14BT6, PANTHER:PTHR12042\:SF4, PRO:DNx] +def: "An alpha-1,4-N-acetylglucosaminyltransferase that is encoded in the genome of mouse." [OMA:Q14BT6, PRO:DNx] comment: Category=organism-gene. synonym: "A4gnt" RELATED Gene-based [UniProtKB:Q14BT6] synonym: "alpha4GnT (mouse)" EXACT [UniProtKB:Q14BT6] @@ -204811,9 +205581,9 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q14CZ0 -name: HUWE1-associated protein modifying stress responses (human) +name: HUWE1-associated protein modifying stress responses 1 (human) namespace: protein -def: "A HUWE1-associated protein modifying stress responses that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q14CZ0] +def: "A HUWE1-associated protein modifying stress responses 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q14CZ0] comment: Category=organism-gene. synonym: "C16orf72" RELATED Gene-based [UniProtKB:Q14CZ0] synonym: "HAPSTR1" RELATED Gene-based [UniProtKB:Q14CZ0] @@ -204822,24 +205592,26 @@ synonym: "TAPR1" RELATED Gene-based [UniProtKB:Q14CZ0] synonym: "telomere attrition and p53 response 1 protein (human)" EXACT [UniProtKB:Q14CZ0] xref: UniProtKB:Q14CZ0 is_a: PR:000029067 ! Homo sapiens protein -is_a: PR:000059782 ! HUWE1-associated protein modifying stress responses -intersection_of: PR:000059782 ! HUWE1-associated protein modifying stress responses +is_a: PR:000059782 ! HUWE1-associated protein modifying stress responses 1 +intersection_of: PR:000059782 ! HUWE1-associated protein modifying stress responses 1 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q14CZ8 -name: hepatocyte cell adhesion molecule (human) +name: hepatic and glial cell adhesion molecule (human) namespace: protein -def: "A hepatocyte cell adhesion molecule that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q14CZ8] +def: "A hepatic and glial cell adhesion molecule that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q14CZ8] comment: Category=organism-gene. +synonym: "glialCAM (human)" EXACT [UniProtKB:Q14CZ8] synonym: "HEPACAM" RELATED Gene-based [UniProtKB:Q14CZ8] +synonym: "hepatocyte cell adhesion molecule (human)" EXACT [UniProtKB:Q14CZ8] synonym: "hHEPACAM" EXACT PRO-short-label [PRO:DNx] synonym: "protein hepaCAM (human)" EXACT [UniProtKB:Q14CZ8] xref: UniProtKB:Q14CZ8 -is_a: PR:000008510 ! hepatocyte cell adhesion molecule +is_a: PR:000008510 ! hepatic and glial cell adhesion molecule is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000008510 ! hepatocyte cell adhesion molecule +intersection_of: PR:000008510 ! hepatic and glial cell adhesion molecule intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -205367,18 +206139,19 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q15155 -name: nodal modulator 1 (human) +name: BOS complex subunit NOMO1 (human) namespace: protein -def: "A nodal modulator 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q15155] +def: "A BOS complex subunit NOMO1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q15155] comment: Category=organism-gene. synonym: "hNOMO1" EXACT PRO-short-label [PRO:DNx] +synonym: "nodal modulator 1 (human)" EXACT [UniProtKB:Q15155] synonym: "NOMO1" RELATED Gene-based [UniProtKB:Q15155] synonym: "PM5" RELATED Gene-based [UniProtKB:Q15155] synonym: "pM5 protein (human)" EXACT [UniProtKB:Q15155] xref: UniProtKB:Q15155 -is_a: PR:000011317 ! nodal modulator 1 +is_a: PR:000011317 ! BOS complex subunit NOMO1 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000011317 ! nodal modulator 1 +intersection_of: PR:000011317 ! BOS complex subunit NOMO1 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -206835,9 +207608,12 @@ comment: Category=organism-gene. synonym: "AGX (human)" EXACT [UniProtKB:Q16222] synonym: "antigen X (human)" EXACT [UniProtKB:Q16222] synonym: "hUAP1" EXACT PRO-short-label [PRO:DNx] +synonym: "protein-pyrophosphorylation enzyme (human)" EXACT [UniProtKB:Q16222] synonym: "SPAG2" RELATED Gene-based [UniProtKB:Q16222] synonym: "sperm-associated antigen 2 (human)" EXACT [UniProtKB:Q16222] synonym: "UAP1" RELATED Gene-based [UniProtKB:Q16222] +synonym: "UDP-N-acetylgalactosamine pyrophosphorylase (human)" EXACT [UniProtKB:Q16222] +synonym: "UDP-N-acetylglucosamine pyrophosphorylase (human)" EXACT [UniProtKB:Q16222] xref: Reactome:R-HSA-3558428 "PR:Q16222 located_in GO:0005829" xref: UniProtKB:Q16222 is_a: PR:000016948 ! UDP-N-acetylhexosamine pyrophosphorylase @@ -206860,6 +207636,7 @@ synonym: "NFE2L2" RELATED Gene-based [UniProtKB:Q16236] synonym: "Nrf-2 (human)" EXACT [UniProtKB:Q16236] synonym: "NRF2" RELATED Gene-based [UniProtKB:Q16236] synonym: "nuclear factor, erythroid derived 2, like 2 (human)" EXACT [UniProtKB:Q16236] +xref: Reactome:R-HSA-201566 "PR:Q16236 located_in GO:0005829" xref: UniProtKB:Q16236 is_a: PR:000011170 ! nuclear factor erythroid 2-related factor 2 is_a: PR:000029067 ! Homo sapiens protein @@ -206910,6 +207687,7 @@ synonym: "cyclic nucleotide-gated cation channel 2 (human)" EXACT [UniProtKB:Q16 synonym: "cyclic nucleotide-gated channel alpha-2 (human)" EXACT [UniProtKB:Q16280] synonym: "hCNGA2" EXACT PRO-short-label [PRO:DNx] xref: DTO:01100086 +xref: Reactome:R-HSA-2671933 "PR:Q16280 located_in GO:0005886" xref: Reactome:R-HSA-5624057 "PR:Q16280 located_in GO:0000139" xref: Reactome:R-HSA-5624063 "PR:Q16280 located_in GO:0030660" xref: Reactome:R-HSA-5624065 "PR:Q16280 located_in GO:0060170" @@ -207894,9 +208672,11 @@ namespace: protein def: "A phosphoenolpyruvate carboxykinase [GTP], mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q16822] comment: Category=organism-gene. synonym: "hPCK2" EXACT PRO-short-label [PRO:DNx] +synonym: "mtPCK2 (human)" EXACT [UniProtKB:Q16822] synonym: "PCK2" RELATED Gene-based [UniProtKB:Q16822] synonym: "PEPCK-M (human)" EXACT [UniProtKB:Q16822] synonym: "PEPCK2" RELATED Gene-based [UniProtKB:Q16822] +synonym: "phosphoenolpyruvate carboxykinase 2, mitochondrial (human)" EXACT [UniProtKB:Q16822] xref: DTO:03100393 xref: UniProtKB:Q16822 is_a: PR:000012417 ! phosphoenolpyruvate carboxykinase [GTP], mitochondrial @@ -208387,7 +209167,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q25C36 name: olfactomedin-like protein 3 (chicken) namespace: protein -def: "An olfactomedin-like protein 3 that is encoded in the genome of chicken." [OMA:Q25C36, PANTHER:PTHR23192\:SF8, PRO:DNx] +def: "An olfactomedin-like protein 3 that is encoded in the genome of chicken." [OMA:Q25C36, PRO:DNx] comment: Category=organism-gene. synonym: "chick-OLFML3" EXACT PRO-short-label [PRO:DNx] synonym: "olfactomedin-noelin-tiarin factor 1 (chicken)" EXACT [UniProtKB:Q25C36] @@ -208405,7 +209185,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q2HZ96 name: protein ATP1B4 (chicken) namespace: protein -def: "A protein ATP1B4 that is encoded in the genome of chicken." [OMA:Q2HZ96, PANTHER:PTHR11523\:SF12, PRO:DNx] +def: "A protein ATP1B4 that is encoded in the genome of chicken." [OMA:Q2HZ96, PRO:DNx] comment: Category=organism-gene. synonym: "ATP1B4" RELATED Gene-based [UniProtKB:Q2HZ96] synonym: "chick-ATP1B4" EXACT PRO-short-label [PRO:DNx] @@ -208442,7 +209222,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q2LK95 name: collectin-10 (chicken) namespace: protein -def: "A collectin-10 that is encoded in the genome of chicken." [OMA:Q2LK95, PANTHER:PTHR24023\:SF389, PRO:DNx] +def: "A collectin-10 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "cCL-1 (chicken)" EXACT [UniProtKB:Q2LK95] synonym: "chick-COLEC10" EXACT PRO-short-label [PRO:DNx] @@ -208744,17 +209524,18 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q2TBF2 -name: WSC domain-containing protein 2 (human) +name: sialate:O-sulfotransferase 2 (human) namespace: protein -def: "A WSC domain-containing protein 2 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q2TBF2] +def: "A sialate:O-sulfotransferase 2 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q2TBF2] comment: Category=organism-gene. synonym: "hWSCD2" EXACT PRO-short-label [PRO:DNx] synonym: "KIAA0789" RELATED Gene-based [UniProtKB:Q2TBF2] +synonym: "WSC domain-containing protein 2 (human)" EXACT [UniProtKB:Q2TBF2] synonym: "WSCD2" RELATED Gene-based [UniProtKB:Q2TBF2] xref: UniProtKB:Q2TBF2 is_a: PR:000029067 ! Homo sapiens protein -is_a: PR:000030696 ! WSC domain-containing protein 2 -intersection_of: PR:000030696 ! WSC domain-containing protein 2 +is_a: PR:000030696 ! sialate:O-sulfotransferase 2 +intersection_of: PR:000030696 ! sialate:O-sulfotransferase 2 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -209213,7 +209994,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q3C1E9 name: histone chaperone ASF1 (chicken) namespace: protein -def: "A histone chaperone ASF1A that is encoded in the genome of chicken." [OMA:Q3C1E9, PANTHER:PTHR12040\:SF0, PRO:DNx] +def: "A histone chaperone ASF1A that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "anti-silencing function protein 1 homolog (chicken)" EXACT [UniProtKB:Q3C1E9] synonym: "ASF1" RELATED Gene-based [UniProtKB:Q3C1E9] @@ -209483,18 +210264,19 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q3TBW2 -name: 39S ribosomal protein L10, mitochondrial (mouse) +name: large ribosomal subunit protein uL10m (mouse) namespace: protein -def: "A 39S ribosomal protein L10, mitochondrial that is encoded in the genome of mouse." [OMA:Q3TBW2, PRO:DNx] +def: "A large ribosomal subunit protein uL10m that is encoded in the genome of mouse." [OMA:Q3TBW2, PRO:DNx] comment: Category=organism-gene. +synonym: "39S ribosomal protein L10, mitochondrial (mouse)" EXACT [UniProtKB:Q3TBW2] synonym: "L10mt (mouse)" EXACT [UniProtKB:Q3TBW2] synonym: "mMRPL10" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-L10 (mouse)" EXACT [UniProtKB:Q3TBW2] synonym: "Mrpl10" RELATED Gene-based [UniProtKB:Q3TBW2] xref: UniProtKB:Q3TBW2 -is_a: PR:000010572 ! 39S ribosomal protein L10, mitochondrial +is_a: PR:000010572 ! large ribosomal subunit protein uL10m is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000010572 ! 39S ribosomal protein L10, mitochondrial +intersection_of: PR:000010572 ! large ribosomal subunit protein uL10m intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1333801 ! Mrpl10 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -209801,16 +210583,19 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q3TNH5 -name: cotranscriptional regulator FAM172A (mouse) +name: cotranscriptional regulator ARB2A (mouse) namespace: protein -def: "A cotranscriptional regulator FAM172A that is encoded in the genome of mouse." [OMA:Q3TNH5, PRO:DNx] +def: "A cotranscriptional regulator ARB2A that is encoded in the genome of mouse." [OMA:Q3TNH5, PRO:DNx] comment: Category=organism-gene. +synonym: "Arb2a" RELATED Gene-based [UniProtKB:Q3TNH5] +synonym: "cotranscriptional regulator FAM172A (mouse)" EXACT [UniProtKB:Q3TNH5] synonym: "Fam172a" RELATED Gene-based [UniProtKB:Q3TNH5] -synonym: "mFAM172A" EXACT PRO-short-label [PRO:DNx] +synonym: "mARB2A" EXACT PRO-short-label [PRO:DNx] +synonym: "protein FAM172A (mouse)" EXACT [UniProtKB:Q3TNH5] xref: UniProtKB:Q3TNH5 is_a: PR:000029032 ! Mus musculus protein -is_a: PR:000030727 ! cotranscriptional regulator FAM172A -intersection_of: PR:000030727 ! cotranscriptional regulator FAM172A +is_a: PR:000030727 ! cotranscriptional regulator ARB2A +intersection_of: PR:000030727 ! cotranscriptional regulator ARB2A intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1915925 ! Fam172a (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -210037,7 +210822,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q3U0P5 name: ectonucleoside triphosphate diphosphohydrolase 6 (mouse) namespace: protein -def: "An ectonucleoside triphosphate diphosphohydrolase 6 that is encoded in the genome of mouse." [OMA:Q3U0P5, PANTHER:PTHR11782\:SF7, PRO:DNx] +def: "An ectonucleoside triphosphate diphosphohydrolase 6 that is encoded in the genome of mouse." [OMA:Q3U0P5, PRO:DNx] comment: Category=organism-gene. synonym: "CD39 antigen-like 2 (mouse)" EXACT [UniProtKB:Q3U0P5] synonym: "Cd39l2" RELATED Gene-based [UniProtKB:Q3U0P5] @@ -210516,16 +211301,17 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q3UEI1 -name: cAMP-specific 3',5'-cyclic phosphodiesterase 4C (mouse) +name: 3',5'-cyclic-AMP phosphodiesterase 4C (mouse) namespace: protein -def: "A cAMP-specific 3',5'-cyclic phosphodiesterase 4C that is encoded in the genome of mouse." [OMA:Q3UEI1, PRO:DNx] +def: "A 3',5'-cyclic-AMP phosphodiesterase 4C that is encoded in the genome of mouse." [OMA:Q3UEI1, PRO:DNx] comment: Category=organism-gene. +synonym: "cAMP-specific phosphodiesterase 4C (mouse)" EXACT [UniProtKB:Q3UEI1] synonym: "mPDE4C" EXACT PRO-short-label [PRO:DNx] synonym: "Pde4c" RELATED Gene-based [UniProtKB:Q3UEI1] xref: UniProtKB:Q3UEI1 -is_a: PR:000012474 ! cAMP-specific 3',5'-cyclic phosphodiesterase 4C +is_a: PR:000012474 ! 3',5'-cyclic-AMP phosphodiesterase 4C is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000012474 ! cAMP-specific 3',5'-cyclic phosphodiesterase 4C +intersection_of: PR:000012474 ! 3',5'-cyclic-AMP phosphodiesterase 4C intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:99556 ! Pde4c (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -210605,7 +211391,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q3UH93 name: plexin-D1 (mouse) namespace: protein -def: "A plexin-D1 that is encoded in the genome of mouse." [OMA:Q3UH93, PANTHER:PTHR22625\:SF7, PRO:DNx] +def: "A plexin-D1 that is encoded in the genome of mouse." [OMA:Q3UH93, PRO:DNx] comment: Category=organism-gene. synonym: "mPLXND1" EXACT PRO-short-label [PRO:DNx] synonym: "Plxnd1" RELATED Gene-based [UniProtKB:Q3UH93] @@ -211021,21 +211807,24 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q3UMC0 -name: ribosome biogenesis protein SPATA5 (mouse) +name: ATPase family gene 2 protein homolog A (mouse) namespace: protein -def: "A ribosome biogenesis protein SPATA5 that is encoded in the genome of mouse." [OMA:Q3UMC0, PRO:DNx] +def: "An ATPase family gene 2 protein homolog A that is encoded in the genome of mouse." [OMA:Q3UMC0, PRO:DNx] comment: Category=organism-gene. -synonym: "mSPATA5" EXACT PRO-short-label [PRO:DNx] +synonym: "AFG2 AAA ATPase homolog A (mouse)" EXACT [UniProtKB:Q3UMC0] +synonym: "Afg2a" RELATED Gene-based [UniProtKB:Q3UMC0] +synonym: "mAFG2A" EXACT PRO-short-label [PRO:DNx] +synonym: "ribosome biogenesis protein SPATA5 (mouse)" EXACT [UniProtKB:Q3UMC0] synonym: "Spaf" RELATED Gene-based [UniProtKB:Q3UMC0] synonym: "Spata5" RELATED Gene-based [UniProtKB:Q3UMC0] synonym: "spermatogenesis-associated factor protein (mouse)" EXACT [UniProtKB:Q3UMC0] synonym: "spermatogenesis-associated protein 5 (mouse)" EXACT [UniProtKB:Q3UMC0] xref: UniProtKB:Q3UMC0 -is_a: PR:000015492 ! ribosome biogenesis protein SPATA5 +is_a: PR:000015492 ! ATPase family gene 2 protein homolog A is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000015492 ! ribosome biogenesis protein SPATA5 +intersection_of: PR:000015492 ! ATPase family gene 2 protein homolog A intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1927170 ! Spata5 (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1927170 ! Afg2a (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -211079,7 +211868,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q3UN04 name: ubiquitin carboxyl-terminal hydrolase 30 (mouse) namespace: protein -def: "A ubiquitin carboxyl-terminal hydrolase 30 that is encoded in the genome of mouse." [OMA:Q3UN04, PANTHER:PTHR24006\:SF41, PRO:DNx] +def: "A ubiquitin carboxyl-terminal hydrolase 30 that is encoded in the genome of mouse." [OMA:Q3UN04, PRO:DNx] comment: Category=organism-gene. synonym: "deubiquitinating enzyme 30 (mouse)" EXACT [UniProtKB:Q3UN04] synonym: "mUSP30" EXACT PRO-short-label [PRO:DNx] @@ -211503,6 +212292,26 @@ intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2685870 ! Pdp1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: PR:Q3UW43 +name: sperm-associated antigen 11B (mouse) +namespace: protein +def: "A sperm-associated antigen 11B that is encoded in the genome of mouse." [OMA:Q3UW43, PRO:DNx] +comment: Category=organism-gene. +synonym: "Ep2" RELATED Gene-based [UniProtKB:Q3UW43] +synonym: "Ep2c/h" RELATED Gene-based [UniProtKB:Q3UW43] +synonym: "mSPAG11B" EXACT PRO-short-label [PRO:DNx] +synonym: "protein EP2 (mouse)" EXACT [UniProtKB:Q3UW43] +synonym: "Spag11b" RELATED Gene-based [UniProtKB:Q3UW43] +synonym: "Spag11c" RELATED Gene-based [UniProtKB:Q3UW43] +xref: UniProtKB:Q3UW43 +is_a: PR:000015454 ! sperm-associated antigen 11B +is_a: PR:000029032 ! Mus musculus protein +intersection_of: PR:000015454 ! sperm-associated antigen 11B +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:3647173 ! Spag11b (mouse) +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: PR:Q3UW68 name: calpain-13 (mouse) @@ -211952,7 +212761,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q3V3E1 name: ubiquitin-associated and SH3 domain-containing protein A (mouse) namespace: protein -def: "A ubiquitin-associated and SH3 domain-containing protein A that is encoded in the genome of mouse." [OMA:Q3V3E1, PANTHER:PTHR16469\:SF7, PRO:DNx] +def: "A ubiquitin-associated and SH3 domain-containing protein A that is encoded in the genome of mouse." [OMA:Q3V3E1, PRO:DNx] comment: Category=organism-gene. synonym: "mUBASH3A" EXACT PRO-short-label [PRO:DNx] synonym: "STS-2 (mouse)" EXACT [UniProtKB:Q3V3E1] @@ -212077,7 +212886,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q45KJ4 name: protein lin-28 homolog B (chicken) namespace: protein -def: "A protein lin-28 homolog B that is encoded in the genome of chicken." [OMA:Q45KJ4, PANTHER:PTHR11544\:SF3, PRO:DNx] +def: "A protein lin-28 homolog B that is encoded in the genome of chicken." [OMA:Q45KJ4, PRO:DNx] comment: Category=organism-gene. synonym: "chick-LIN28B" EXACT PRO-short-label [PRO:DNx] synonym: "lin-28B (chicken)" EXACT [UniProtKB:Q45KJ4] @@ -212286,7 +213095,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q4ACU6 name: SH3 and multiple ankyrin repeat domains protein 3 (mouse) namespace: protein -def: "An SH3 and multiple ankyrin repeat domains protein 3 that is encoded in the genome of mouse." [OMA:Q4ACU6, PRO:DNx] +def: "An SH3 and multiple ankyrin repeat domains protein 3 that is encoded in the genome of mouse." [PRO:DNx] comment: Category=organism-gene. synonym: "Kiaa1650" RELATED Gene-based [UniProtKB:Q4ACU6] synonym: "mSHANK3" EXACT PRO-short-label [PRO:DNx] @@ -212603,7 +213412,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q4VA61 name: cell adhesion molecule DSCAML1 (mouse) namespace: protein -def: "A cell adhesion molecule DSCAML1 that is encoded in the genome of mouse." [OMA:Q4VA61, PANTHER:PTHR10489\:SF171, PRO:DNx] +def: "A cell adhesion molecule DSCAML1 that is encoded in the genome of mouse." [OMA:Q4VA61, PRO:DNx] comment: Category=organism-gene. synonym: "Down syndrome cell adhesion molecule-like protein 1 homolog (mouse)" EXACT [UniProtKB:Q4VA61] synonym: "Dscaml1" RELATED Gene-based [UniProtKB:Q4VA61] @@ -212875,6 +213684,23 @@ intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2444069 ! Vwc2l (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: PR:Q50L44 +name: leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 (chicken) +namespace: protein +def: "A leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 that is encoded in the genome of chicken." [OMA:Q50L44, PRO:DNx] +comment: Category=organism-gene. +synonym: "chick-LINGO1" EXACT PRO-short-label [PRO:DNx] +synonym: "cLINGO-1 (chicken)" EXACT [UniProtKB:Q50L44] +synonym: "LINGO1" RELATED Gene-based [UniProtKB:Q50L44] +xref: UniProtKB:Q50L44 +is_a: PR:000009830 ! leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 +is_a: PR:000029063 ! Gallus gallus protein +intersection_of: PR:000009830 ! leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 +intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus +relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/415344 ! LINGO1 (chicken) +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: PR:Q50L61 name: TL1A (chicken) @@ -213401,16 +214227,18 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q5BKX5 -name: UPF0692 protein C19orf54 (human) +name: actin maturation protease (human) namespace: protein -def: "A UPF0692 protein C19orf54 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q5BKX5] +def: "An actin maturation protease that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q5BKX5] comment: Category=organism-gene. +synonym: "actin aminopeptidase ACTMAP (human)" EXACT [UniProtKB:Q5BKX5] +synonym: "ACTMAP" RELATED Gene-based [UniProtKB:Q5BKX5] synonym: "C19orf54" RELATED Gene-based [UniProtKB:Q5BKX5] -synonym: "hC19orf54" EXACT PRO-short-label [PRO:DNx] +synonym: "hACTMAP" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:Q5BKX5 is_a: PR:000029067 ! Homo sapiens protein -is_a: PR:000059810 ! UPF0692 protein C19orf54 -intersection_of: PR:000059810 ! UPF0692 protein C19orf54 +is_a: PR:000059810 ! actin maturation protease +intersection_of: PR:000059810 ! actin maturation protease intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -213454,6 +214282,7 @@ synonym: "Reg1 (human)" EXACT [UniProtKB:Q5D1E8] synonym: "regnase-1 (human)" EXACT [UniProtKB:Q5D1E8] synonym: "ZC3H12A" RELATED Gene-based [UniProtKB:Q5D1E8] synonym: "zinc finger CCCH domain-containing protein 12A (human)" EXACT [UniProtKB:Q5D1E8] +xref: Reactome:R-HSA-9774235 "PR:Q5D1E8 located_in GO:0005654" xref: UniProtKB:Q5D1E8 is_a: PR:000017598 ! endoribonuclease ZC3H12A is_a: PR:000029067 ! Homo sapiens protein @@ -213596,7 +214425,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q5DTT2 name: PH and SEC7 domain-containing protein 1 (mouse) namespace: protein -def: "A PH and SEC7 domain-containing protein 1 that is encoded in the genome of mouse." [PRO:DNx] +def: "A PH and SEC7 domain-containing protein 1 that is encoded in the genome of mouse." [OMA:Q5DTT2, PRO:DNx] comment: Category=organism-gene. synonym: "Efa6a" RELATED Gene-based [UniProtKB:Q5DTT2] synonym: "exchange factor for ADP-ribosylation factor guanine nucleotide factor 6 (mouse)" EXACT [UniProtKB:Q5DTT2] @@ -213862,7 +214691,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q5F334 name: leucine-rich repeat-containing protein 59 (chicken) namespace: protein -def: "A leucine-rich repeat-containing protein 59 that is encoded in the genome of chicken." [PRO:DNx] +def: "A leucine-rich repeat-containing protein 59 that is encoded in the genome of chicken." [OMA:Q5F334, PRO:DNx] comment: Category=organism-gene. synonym: "chick-LRRC59" EXACT PRO-short-label [PRO:DNx] synonym: "LRRC59" RELATED Gene-based [UniProtKB:Q5F334] @@ -213879,7 +214708,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F336 name: acyl-coenzyme A thioesterase MBLAC2 (chicken) namespace: protein -def: "An acyl-coenzyme A thioesterase MBLAC2 that is encoded in the genome of chicken." [PRO:DNx] +def: "An acyl-coenzyme A thioesterase MBLAC2 that is encoded in the genome of chicken." [OMA:Q5F336, PRO:DNx] comment: Category=organism-gene. synonym: "acyl-CoA thioesterase MBLAC2 (chicken)" EXACT [UniProtKB:Q5F336] synonym: "beta-lactamase MBLAC2 (chicken)" RELATED [UniProtKB:Q5F336] @@ -213900,7 +214729,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F339 name: holocytochrome c-type synthase (chicken) namespace: protein -def: "A holocytochrome c-type synthase that is encoded in the genome of chicken." [PANTHER:PTHR12743\:SF0, PRO:DNx] +def: "A holocytochrome c-type synthase that is encoded in the genome of chicken." [OMA:Q5F339, PRO:DNx] comment: Category=organism-gene. synonym: "CCHL (chicken)" EXACT [UniProtKB:Q5F339] synonym: "chick-HCCS" EXACT PRO-short-label [PRO:DNx] @@ -213919,7 +214748,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F352 name: GTPase NRas (chicken) namespace: protein -def: "A GTPase NRas that is encoded in the genome of chicken." [OMA:Q5F352, PANTHER:PTHR24070\:SF125, PRO:DNx] +def: "A GTPase NRas that is encoded in the genome of chicken." [OMA:Q5F352, PRO:DNx] comment: Category=organism-gene. synonym: "chick-NRAS" EXACT PRO-short-label [PRO:DNx] synonym: "NRAS" RELATED Gene-based [UniProtKB:Q5F352] @@ -213961,7 +214790,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F359 name: trafficking protein particle complex subunit 5 (chicken) namespace: protein -def: "A trafficking protein particle complex subunit 5 that is encoded in the genome of chicken." [PRO:DNx] +def: "A trafficking protein particle complex subunit 5 that is encoded in the genome of chicken." [OMA:Q5F359, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TRAPPC5" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_33f11" RELATED Gene-based [UniProtKB:Q5F359] @@ -213978,7 +214807,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F363 name: protein Jumonji (chicken) namespace: protein -def: "A protein Jumonji that is encoded in the genome of chicken." [PANTHER:PTHR10694\:SF9, PRO:DNx] +def: "A protein Jumonji that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-JARID2" EXACT PRO-short-label [PRO:DNx] synonym: "JARID2" RELATED Gene-based [UniProtKB:Q5F363] @@ -214014,7 +214843,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F398 name: E3 ubiquitin-protein transferase MAEA (chicken) namespace: protein -def: "An E3 ubiquitin-protein transferase MAEA that is encoded in the genome of chicken." [OMA:Q5F398, PANTHER:PTHR12170\:SF2, PRO:DNx] +def: "An E3 ubiquitin-protein transferase MAEA that is encoded in the genome of chicken." [OMA:Q5F398, PRO:DNx] comment: Category=organism-gene. synonym: "chick-MAEA" EXACT PRO-short-label [PRO:DNx] synonym: "macrophage erythroblast attacher (chicken)" EXACT [UniProtKB:Q5F398] @@ -214032,7 +214861,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F3A2 name: charged multivesicular body protein 2b (chicken) namespace: protein -def: "A charged multivesicular body protein 2b that is encoded in the genome of chicken." [PANTHER:PTHR10476\:SF5, PRO:DNx] +def: "A charged multivesicular body protein 2b that is encoded in the genome of chicken." [OMA:Q5F3A2, PRO:DNx] comment: Category=organism-gene. synonym: "chick-CHMP2B" EXACT PRO-short-label [PRO:DNx] synonym: "CHMP2B" RELATED Gene-based [UniProtKB:Q5F3A2] @@ -214068,7 +214897,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F3E8 name: BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 (chicken) namespace: protein -def: "A BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 that is encoded in the genome of chicken." [PANTHER:PTHR11145\:SF8, PRO:DNx] +def: "A BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 that is encoded in the genome of chicken." [OMA:Q5F3E8, PRO:DNx] comment: Category=organism-gene. synonym: "BTB/POZ domain-containing protein TNFAIP1 (chicken)" EXACT [UniProtKB:Q5F3E8] synonym: "chick-TNFAIP1" EXACT PRO-short-label [PRO:DNx] @@ -214086,7 +214915,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F3F2 name: histone H2A deubiquitinase MYSM1 (chicken) namespace: protein -def: "A deubiquitinase MYSM1 that is encoded in the genome of chicken." [PANTHER:PTHR12802\:SF11, PRO:DNx] +def: "A deubiquitinase MYSM1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "2A-DUB (chicken)" EXACT [UniProtKB:Q5F3F2] synonym: "chick-MYSM1" EXACT PRO-short-label [PRO:DNx] @@ -214105,7 +214934,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F3G7 name: glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 (chicken) namespace: protein -def: "A glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 that is encoded in the genome of chicken." [OMA:Q5F3G7, PANTHER:PTHR23033\:SF1, PRO:DNx] +def: "A glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "C1GALT1" RELATED Gene-based [UniProtKB:Q5F3G7] synonym: "C1GalT1 (chicken)" EXACT [UniProtKB:Q5F3G7] @@ -214127,7 +214956,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F3J5 name: proteasome activator complex subunit 3 (chicken) namespace: protein -def: "A proteasome activator complex subunit 3 that is encoded in the genome of chicken." [OMA:Q5F3J5, PANTHER:PTHR10660\:SF4, PRO:DNx] +def: "A proteasome activator complex subunit 3 that is encoded in the genome of chicken." [OMA:Q5F3J5, PRO:DNx] comment: Category=organism-gene. synonym: "activator of multicatalytic protease subunit 3 (chicken)" EXACT [UniProtKB:Q5F3J5] synonym: "chick-PSME3" EXACT PRO-short-label [PRO:DNx] @@ -214149,7 +214978,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F3K0 name: tetratricopeptide repeat protein 27 (chicken) namespace: protein -def: "A tetratricopeptide repeat protein 27 that is encoded in the genome of chicken." [PRO:DNx] +def: "A tetratricopeptide repeat protein 27 that is encoded in the genome of chicken." [OMA:Q5F3K0, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TTC27" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_15c1" RELATED Gene-based [UniProtKB:Q5F3K0] @@ -214203,7 +215032,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F3N6 name: ubiquitin carboxyl-terminal hydrolase BAP1 (chicken) namespace: protein -def: "A ubiquitin carboxyl-terminal hydrolase BAP1 that is encoded in the genome of chicken." [PANTHER:PTHR10589\:SF21, PRO:DNx] +def: "A ubiquitin carboxyl-terminal hydrolase BAP1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "BAP1" RELATED Gene-based [UniProtKB:Q5F3N6] synonym: "BRCA1-associated protein 1 (chicken)" EXACT [UniProtKB:Q5F3N6] @@ -214233,7 +215062,9 @@ is_a: PR:000029063 ! Gallus gallus protein is_a: PR:000031546 ! DDB1- and CUL4-associated factor 12 intersection_of: PR:000031546 ! DDB1- and CUL4-associated factor 12 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/427396 ! DCAF12 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00000005800 ! DCAF12 copy 1 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00010011712.1 ! DCAF12 copy 2 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00015029355 ! DCAF12 copy 3 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] @@ -214255,7 +215086,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F3T9 name: UDP-glucose 6-dehydrogenase (chicken) namespace: protein -def: "A UDP-glucose 6-dehydrogenase that is encoded in the genome of chicken." [OMA:Q5F3T9, PANTHER:PTHR11374\:SF3, PRO:DNx] +def: "A UDP-glucose 6-dehydrogenase that is encoded in the genome of chicken." [OMA:Q5F3T9, PRO:DNx] comment: Category=organism-gene. synonym: "chick-UGDH" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_7d7" RELATED Gene-based [UniProtKB:Q5F3T9] @@ -214275,7 +215106,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F3W3 name: mitogen-activated protein kinase 6 (chicken) namespace: protein -def: "A mitogen-activated protein kinase 6 that is encoded in the genome of chicken." [OMA:Q5F3W3, PANTHER:PTHR24055\:SF57, PRO:DNx] +def: "A mitogen-activated protein kinase 6 that is encoded in the genome of chicken." [OMA:Q5F3W3, PRO:DNx] comment: Category=organism-gene. synonym: "chick-MAPK6" EXACT PRO-short-label [PRO:DNx] synonym: "MAP kinase 6 (chicken)" EXACT [UniProtKB:Q5F3W3] @@ -214311,7 +215142,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F3Z3 name: ubiquitin-conjugating enzyme E2 variant 2 (chicken) namespace: protein -def: "A ubiquitin-conjugating enzyme E2 variant 2 that is encoded in the genome of chicken." [PANTHER:PTHR24067\:SF8, PRO:DNx] +def: "A ubiquitin-conjugating enzyme E2 variant 2 that is encoded in the genome of chicken." [OMA:Q5F3Z3, PRO:DNx] comment: Category=organism-gene. synonym: "chick-UBE2V2" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_4b12" RELATED Gene-based [UniProtKB:Q5F3Z3] @@ -214328,7 +215159,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F3Z5 name: DnaJ homolog subfamily B member 6 (chicken) namespace: protein -def: "A DnaJ homolog subfamily B member 6 that is encoded in the genome of chicken." [OMA:Q5F3Z5, PANTHER:PTHR24077\:SF66, PRO:DNx] +def: "A DnaJ homolog subfamily B member 6 that is encoded in the genome of chicken." [OMA:Q5F3Z5, PRO:DNx] comment: Category=organism-gene. synonym: "chick-DNAJB6" EXACT PRO-short-label [PRO:DNx] synonym: "DNAJB6" RELATED Gene-based [UniProtKB:Q5F3Z5] @@ -214404,7 +215235,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F416 name: TIMELESS-interacting protein (chicken) namespace: protein -def: "A TIMELESS-interacting protein that is encoded in the genome of chicken." [PANTHER:PTHR13220\:SF7, PRO:DNx] +def: "A TIMELESS-interacting protein that is encoded in the genome of chicken." [OMA:Q5F416, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TIPIN" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_3n6" RELATED Gene-based [UniProtKB:Q5F416] @@ -214421,7 +215252,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F433 name: PRA1 family protein 3 (chicken) namespace: protein -def: "A PRA1 family protein 3 that is encoded in the genome of chicken." [PANTHER:PTHR12859\:SF0, PRO:DNx] +def: "A PRA1 family protein 3 that is encoded in the genome of chicken." [OMA:Q5F433, PRO:DNx] comment: Category=organism-gene. synonym: "ADP-ribosylation factor-like protein 6-interacting protein 5 (chicken)" EXACT [UniProtKB:Q5F433] synonym: "Aip-5 (chicken)" EXACT [UniProtKB:Q5F433] @@ -214442,7 +215273,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F480 name: inositol-tetrakisphosphate 1-kinase (chicken) namespace: protein -def: "An inositol-tetrakisphosphate 1-kinase that is encoded in the genome of chicken." [OMA:Q5F480, PANTHER:PTHR14217\:SF0, PRO:DNx] +def: "An inositol-tetrakisphosphate 1-kinase that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-ITPK1" EXACT PRO-short-label [PRO:DNx] synonym: "inositol 1,3,4-trisphosphate 5/6-kinase (chicken)" EXACT [UniProtKB:Q5F480] @@ -214462,7 +215293,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F486 name: BAG family molecular chaperone regulator 5 (chicken) namespace: protein -def: "A BAG family molecular chaperone regulator 5 that is encoded in the genome of chicken." [OMA:Q5F486, PANTHER:PTHR12329\:SF2, PRO:DNx] +def: "A BAG family molecular chaperone regulator 5 that is encoded in the genome of chicken." [OMA:Q5F486, PRO:DNx] comment: Category=organism-gene. synonym: "BAG-5 (chicken)" EXACT [UniProtKB:Q5F486] synonym: "BAG5" RELATED Gene-based [UniProtKB:Q5F486] @@ -214505,7 +215336,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5F4B2 name: switch-associated protein 70 (chicken) namespace: protein -def: "A switch-associated protein 70 that is encoded in the genome of chicken." [OMA:Q5F4B2, PANTHER:PTHR14383\:SF5, PRO:DNx] +def: "A switch-associated protein 70 that is encoded in the genome of chicken." [OMA:Q5F4B2, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SWAP70" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_1e1" RELATED Gene-based [UniProtKB:Q5F4B2] @@ -214560,7 +215391,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q5FWI3 name: cell surface hyaluronidase (mouse) namespace: protein -def: "A cell surface hyaluronidase that is encoded in the genome of mouse." [OMA:Q5FWI3, PRO:DNx] +def: "A cell surface hyaluronidase CEMIP2 that is encoded in the genome of mouse." [OMA:Q5FWI3, PRO:DNx] comment: Category=organism-gene. synonym: "cell migration-inducing hyaluronidase 2 (mouse)" EXACT [UniProtKB:Q5FWI3] synonym: "Cemip2" RELATED Gene-based [UniProtKB:Q5FWI3] @@ -214570,8 +215401,8 @@ synonym: "Tmem2" RELATED Gene-based [UniProtKB:Q5FWI3] synonym: "transmembrane protein 2 (mouse)" EXACT [UniProtKB:Q5FWI3] xref: UniProtKB:Q5FWI3 is_a: PR:000029032 ! Mus musculus protein -is_a: PR:000030473 ! cell surface hyaluronidase -intersection_of: PR:000030473 ! cell surface hyaluronidase +is_a: PR:000030473 ! cell surface hyaluronidase CEMIP2 +intersection_of: PR:000030473 ! cell surface hyaluronidase CEMIP2 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1890373 ! Cemip2 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -214910,17 +215741,18 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q5JPE7 -name: nodal modulator 2 (human) +name: BOS complex subunit NOMO2 (human) namespace: protein -def: "A nodal modulator 2 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q5JPE7] +def: "A BOS complex subunit NOMO2 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q5JPE7] comment: Category=organism-gene. synonym: "hNOMO2" EXACT PRO-short-label [PRO:DNx] +synonym: "nodal modulator 2 (human)" EXACT [UniProtKB:Q5JPE7] synonym: "NOMO2" RELATED Gene-based [UniProtKB:Q5JPE7] synonym: "pM5 protein 2 (human)" EXACT [UniProtKB:Q5JPE7] xref: UniProtKB:Q5JPE7 -is_a: PR:000011318 ! nodal modulator 2 +is_a: PR:000011318 ! BOS complex subunit NOMO2 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000011318 ! nodal modulator 2 +intersection_of: PR:000011318 ! BOS complex subunit NOMO2 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -216004,6 +216836,7 @@ def: "A MAGUK p55 subfamily member 7 that is encoded in the genome of human." [P comment: Category=organism-gene. synonym: "hMPP7" EXACT PRO-short-label [PRO:DNx] synonym: "MPP7" RELATED Gene-based [UniProtKB:Q5T2T1] +xref: Reactome:R-HSA-9714466 "PR:Q5T2T1 located_in GO:0005886" xref: UniProtKB:Q5T2T1 is_a: PR:000010547 ! MAGUK p55 subfamily member 7 is_a: PR:000029067 ! Homo sapiens protein @@ -216119,20 +216952,20 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q5T653 -name: 39S ribosomal protein L2, mitochondrial (human) +name: large ribosomal subunit protein uL2m (human) namespace: protein -def: "A 39S ribosomal protein L2, mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q5T653] +def: "A large ribosomal subunit protein uL2m that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q5T653] comment: Category=organism-gene. +synonym: "39S ribosomal protein L2, mitochondrial (human)" EXACT [UniProtKB:Q5T653] synonym: "CGI-22" RELATED Gene-based [UniProtKB:Q5T653] synonym: "hMRPL2" EXACT PRO-short-label [PRO:DNx] synonym: "L2mt (human)" BROAD [UniProtKB:Q5T653] -synonym: "mitochondrial large ribosomal subunit protein uL2m (human)" EXACT [UniProtKB:Q5T653] synonym: "MRP-L2 (human)" BROAD [UniProtKB:Q5T653] synonym: "MRPL2" RELATED Gene-based [UniProtKB:Q5T653] xref: UniProtKB:Q5T653 -is_a: PR:000010582 ! 39S ribosomal protein L2, mitochondrial +is_a: PR:000010582 ! large ribosomal subunit protein uL2m is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000010582 ! 39S ribosomal protein L2, mitochondrial +intersection_of: PR:000010582 ! large ribosomal subunit protein uL2m intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -216231,16 +217064,17 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q5T8I3 -name: protein FAM102B (human) +name: EEIG family member 2 (human) namespace: protein -def: "A protein FAM102B that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q5T8I3] +def: "An EEIG family member 2 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q5T8I3] comment: Category=organism-gene. +synonym: "EEIG2" RELATED Gene-based [UniProtKB:Q5T8I3] synonym: "FAM102B" RELATED Gene-based [UniProtKB:Q5T8I3] -synonym: "hFAM102B" EXACT PRO-short-label [PRO:DNx] +synonym: "hEEIG2" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:Q5T8I3 is_a: PR:000029067 ! Homo sapiens protein -is_a: PR:000029452 ! protein FAM102B -intersection_of: PR:000029452 ! protein FAM102B +is_a: PR:000029452 ! EEIG family member 2 +intersection_of: PR:000029452 ! EEIG family member 2 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -216751,6 +217585,7 @@ synonym: "MRCK alpha (human)" EXACT [UniProtKB:Q5VT25] synonym: "myotonic dystrophy kinase-related CDC42-binding kinase alpha (human)" EXACT [UniProtKB:Q5VT25] synonym: "myotonic dystrophy protein kinase-like alpha (human)" BROAD [UniProtKB:Q5VT25] xref: DTO:03100341 +xref: Reactome:R-HSA-419871 "PR:Q5VT25 located_in GO:0005829" xref: UniProtKB:Q5VT25 is_a: PR:000005205 ! serine/threonine-protein kinase MRCK alpha is_a: PR:000029067 ! Homo sapiens protein @@ -217190,7 +218025,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q5XXA9 name: lens epithelium-derived growth factor (chicken) namespace: protein -def: "A PC4 and SFRS1-interacting protein that is encoded in the genome of chicken." [PANTHER:PTHR12550\:SF9, PRO:DNx] +def: "A PC4 and SFRS1-interacting protein that is encoded in the genome of chicken." [OMA:Q5XXA9, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PSIP1" EXACT PRO-short-label [PRO:DNx] synonym: "LEDGF" RELATED Gene-based [UniProtKB:Q5XXA9] @@ -217226,7 +218061,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q5ZHM5 name: protein RER1 (chicken) namespace: protein -def: "A protein RER1 that is encoded in the genome of chicken." [OMA:Q5ZHM5, PANTHER:PTHR10743\:SF0, PRO:DNx] +def: "A protein RER1 that is encoded in the genome of chicken." [OMA:Q5ZHM5, PRO:DNx] comment: Category=organism-gene. synonym: "chick-RER1" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_35f13" RELATED Gene-based [UniProtKB:Q5ZHM5] @@ -217281,7 +218116,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZHS3 name: nuclear nucleic acid-binding protein C1D (chicken) namespace: protein -def: "A nuclear nucleic acid-binding protein C1D that is encoded in the genome of chicken." [PANTHER:PTHR15341\:SF3, PRO:DNx] +def: "A nuclear nucleic acid-binding protein C1D that is encoded in the genome of chicken." [OMA:Q5ZHS3, PRO:DNx] comment: Category=organism-gene. synonym: "C1D" RELATED Gene-based [UniProtKB:Q5ZHS3] synonym: "chick-C1D" EXACT PRO-short-label [PRO:DNx] @@ -217298,7 +218133,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZHV8 name: RecQ-mediated genome instability protein 1 (chicken) namespace: protein -def: "A RecQ-mediated genome instability protein 1 that is encoded in the genome of chicken." [PRO:DNx] +def: "A RecQ-mediated genome instability protein 1 that is encoded in the genome of chicken." [OMA:Q5ZHV8, PRO:DNx] comment: Category=organism-gene. synonym: "chick-RMI1" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_32l8" RELATED Gene-based [UniProtKB:Q5ZHV8] @@ -217366,7 +218201,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZHX7 name: NADH-cytochrome b5 reductase 2 (chicken) namespace: protein -def: "An NADH-cytochrome b5 reductase 2 that is encoded in the genome of chicken." [PANTHER:PTHR19370\:SF20, PRO:DNx] +def: "An NADH-cytochrome b5 reductase 2 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "b5R.2 (chicken)" EXACT [UniProtKB:Q5ZHX7] synonym: "chick-CYB5R2" EXACT PRO-short-label [PRO:DNx] @@ -217417,7 +218252,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZI16 name: tRNA-specific adenosine deaminase 1 (chicken) namespace: protein -def: "A tRNA-specific adenosine deaminase 1 that is encoded in the genome of chicken." [PANTHER:PTHR10910\:SF12, PRO:DNx] +def: "A tRNA-specific adenosine deaminase 1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "ADAT1" RELATED Gene-based [UniProtKB:Q5ZI16] synonym: "chick-ADAT1" EXACT PRO-short-label [PRO:DNx] @@ -217451,7 +218286,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZI23 name: hydroxyacylglutathione hydrolase, mitochondrial (chicken) namespace: protein -def: "A hydroxyacylglutathione hydrolase that is encoded in the genome of chicken." [OMA:Q5ZI23, PANTHER:PTHR11935\:SF7, PRO:DNx] +def: "A hydroxyacylglutathione hydrolase that is encoded in the genome of chicken." [OMA:Q5ZI23, PRO:DNx] comment: Category=organism-gene. synonym: "chick-HAGH" EXACT PRO-short-label [PRO:DNx] synonym: "Glx II (chicken)" EXACT [UniProtKB:Q5ZI23] @@ -217486,7 +218321,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZI33 name: kelch-like protein 7 (chicken) namespace: protein -def: "A kelch-like protein 7 that is encoded in the genome of chicken." [OMA:Q5ZI33, PANTHER:PTHR24412\:SF169, PRO:DNx] +def: "A kelch-like protein 7 that is encoded in the genome of chicken." [OMA:Q5ZI33, PRO:DNx] comment: Category=organism-gene. synonym: "chick-KLHL7" EXACT PRO-short-label [PRO:DNx] synonym: "KLHL7" RELATED Gene-based [UniProtKB:Q5ZI33] @@ -217525,7 +218360,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZI42 name: malignant T-cell-amplified sequence 1 (chicken) namespace: protein -def: "A malignant T cell-amplified sequence 1 that is encoded in the genome of chicken." [OMA:Q5ZI42, PANTHER:PTHR22798\:SF0, PRO:DNx] +def: "A malignant T cell-amplified sequence 1 that is encoded in the genome of chicken." [OMA:Q5ZI42, PRO:DNx] comment: Category=organism-gene. synonym: "chick-MCTS1" EXACT PRO-short-label [PRO:DNx] synonym: "MCT-1 (chicken)" EXACT [UniProtKB:Q5ZI42] @@ -217543,7 +218378,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZI43 name: snurportin-1 (chicken) namespace: protein -def: "A snurportin-1 that is encoded in the genome of chicken." [PANTHER:PTHR13403\:SF7, PRO:DNx] +def: "A snurportin-1 that is encoded in the genome of chicken." [OMA:Q5ZI43, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SNUPN" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_30h8" RELATED Gene-based [UniProtKB:Q5ZI43] @@ -217562,7 +218397,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZI49 name: ribose-phosphate pyrophosphokinase 2 (chicken) namespace: protein -def: "A ribose-phosphate pyrophosphokinase 2 that is encoded in the genome of chicken." [PANTHER:PTHR10210\:SF30, PRO:DNx] +def: "A ribose-phosphate pyrophosphokinase 2 that is encoded in the genome of chicken." [OMA:Q5ZI49, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PRPS2" EXACT PRO-short-label [PRO:DNx] synonym: "phosphoribosyl pyrophosphate synthase II (chicken)" EXACT [UniProtKB:Q5ZI49] @@ -217581,7 +218416,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZI51 name: ADP-ribosylhydrolase ARH3 (chicken) namespace: protein -def: "An ADP-ribosylhydrolase ARH3 that is encoded in the genome of chicken." [PANTHER:PTHR16222\:SF10, PRO:DNx] +def: "An ADP-ribosylhydrolase ARH3 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "[protein ADP-ribosylarginine] hydrolase-like protein 2 (chicken)" EXACT [UniProtKB:Q5ZI51] synonym: "[protein ADP-ribosylserine] hydrolase (chicken)" EXACT [UniProtKB:Q5ZI51] @@ -217606,7 +218441,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZI57 name: trafficking protein particle complex subunit 3 (chicken) namespace: protein -def: "A trafficking protein particle complex subunit 3 that is encoded in the genome of chicken." [OMA:Q5ZI57, PANTHER:PTHR13048\:SF0, PRO:DNx] +def: "A trafficking protein particle complex subunit 3 that is encoded in the genome of chicken." [OMA:Q5ZI57, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TRAPPC3" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_30c23" RELATED Gene-based [UniProtKB:Q5ZI57] @@ -217623,7 +218458,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZI67 name: NHL repeat-containing protein 2 (chicken) namespace: protein -def: "An NHL repeat-containing protein 2 that is encoded in the genome of chicken." [PRO:DNx] +def: "An NHL repeat-containing protein 2 that is encoded in the genome of chicken." [OMA:Q5ZI67, PRO:DNx] comment: Category=organism-gene. synonym: "chick-NHLRC2" EXACT PRO-short-label [PRO:DNx] synonym: "NHLRC2" RELATED Gene-based [UniProtKB:Q5ZI67] @@ -217640,7 +218475,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZI72 name: heterogeneous nuclear ribonucleoprotein D-like (chicken) namespace: protein -def: "A heterogeneous nuclear ribonucleoprotein D-like that is encoded in the genome of chicken." [OMA:Q5ZI72, PANTHER:PTHR24012\:SF214, PRO:DNx] +def: "A heterogeneous nuclear ribonucleoprotein D-like that is encoded in the genome of chicken." [OMA:Q5ZI72, PRO:DNx] comment: Category=organism-gene. synonym: "chick-HNRNPDL" EXACT PRO-short-label [PRO:DNx] synonym: "hnRNP D-like (chicken)" EXACT [UniProtKB:Q5ZI72] @@ -217724,7 +218559,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZID5 name: ubiquitin carboxyl-terminal hydrolase 28 (chicken) namespace: protein -def: "A ubiquitin carboxyl-terminal hydrolase 28 that is encoded in the genome of chicken." [PANTHER:PTHR24006\:SF2, PRO:DNx] +def: "A ubiquitin carboxyl-terminal hydrolase 28 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-USP28" EXACT PRO-short-label [PRO:DNx] synonym: "deubiquitinating enzyme 28 (chicken)" EXACT [UniProtKB:Q5ZID5] @@ -217772,7 +218607,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZIE4 name: carbohydrate sulfotransferase 10 (chicken) namespace: protein -def: "A carbohydrate sulfotransferase 10 that is encoded in the genome of chicken." [PANTHER:PTHR12137\:SF2, PRO:DNx] +def: "A carbohydrate sulfotransferase 10 that is encoded in the genome of chicken." [OMA:Q5ZIE4, PRO:DNx] comment: Category=organism-gene. synonym: "chick-CHST10" EXACT PRO-short-label [PRO:DNx] synonym: "CHST10" RELATED Gene-based [UniProtKB:Q5ZIE4] @@ -217792,7 +218627,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZIE6 name: NEDD8-activating enzyme E1 regulatory subunit (chicken) namespace: protein -def: "A NEDD8-activating enzyme E1 regulatory subunit that is encoded in the genome of chicken." [PANTHER:PTHR10953\:SF29, PRO:DNx] +def: "A NEDD8-activating enzyme E1 regulatory subunit that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "amyloid protein-binding protein 1 (chicken)" EXACT [UniProtKB:Q5ZIE6] synonym: "APP-BP1 (chicken)" EXACT [UniProtKB:Q5ZIE6] @@ -217812,7 +218647,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZIF1 name: adipocyte plasma membrane-associated protein (chicken) namespace: protein -def: "An adipocyte plasma membrane-associated protein that is encoded in the genome of chicken." [OMA:Q5ZIF1, PANTHER:PTHR10426\:SF6, PRO:DNx] +def: "An adipocyte plasma membrane-associated protein that is encoded in the genome of chicken." [OMA:Q5ZIF1, PRO:DNx] comment: Category=organism-gene. synonym: "APMAP" RELATED Gene-based [UniProtKB:Q5ZIF1] synonym: "chick-APMAP" EXACT PRO-short-label [PRO:DNx] @@ -217849,7 +218684,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZIJ8 name: uracil phosphoribosyltransferase homolog (chicken) namespace: protein -def: "A uracil phosphoribosyltransferase that is encoded in the genome of chicken." [OMA:Q5ZIJ8, PANTHER:PTHR10285\:SF1, PRO:DNx] +def: "A uracil phosphoribosyltransferase that is encoded in the genome of chicken." [OMA:Q5ZIJ8, PRO:DNx] comment: Category=organism-gene. synonym: "chick-UPRT" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_25k2" RELATED Gene-based [UniProtKB:Q5ZIJ8] @@ -217884,7 +218719,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZIK9 name: coatomer subunit epsilon (chicken) namespace: protein -def: "A coatomer subunit epsilon that is encoded in the genome of chicken." [OMA:Q5ZIK9, PANTHER:PTHR10805\:SF0, PRO:DNx] +def: "A coatomer subunit epsilon that is encoded in the genome of chicken." [OMA:Q5ZIK9, PRO:DNx] comment: Category=organism-gene. synonym: "chick-COPE" EXACT PRO-short-label [PRO:DNx] synonym: "COPE" RELATED Gene-based [UniProtKB:Q5ZIK9] @@ -217903,7 +218738,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZIL2 name: vacuolar protein sorting-associated protein 29 (chicken) namespace: protein -def: "A vacuolar protein sorting-associated protein 29 that is encoded in the genome of chicken." [PANTHER:PTHR11124\:SF3, PRO:DNx] +def: "A vacuolar protein sorting-associated protein 29 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-VPS29" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_25e21" RELATED Gene-based [UniProtKB:Q5ZIL2] @@ -217961,7 +218796,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZIP2 name: ragulator complex protein LAMTOR3 (chicken) namespace: protein -def: "A mitogen-activated protein kinase scaffold protein 1 that is encoded in the genome of chicken." [PANTHER:PTHR13378\:SF0, PRO:DNx] +def: "A mitogen-activated protein kinase scaffold protein 1 that is encoded in the genome of chicken." [OMA:Q5ZIP2, PRO:DNx] comment: Category=organism-gene. synonym: "chick-LAMTOR3" EXACT PRO-short-label [PRO:DNx] synonym: "LAMTOR3" RELATED Gene-based [UniProtKB:Q5ZIP2] @@ -217979,7 +218814,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZIP3 name: deoxyhypusine hydroxylase (chicken) namespace: protein -def: "A deoxyhypusine hydroxylase that is encoded in the genome of chicken." [OMA:Q5ZIP3, PANTHER:PTHR12697\:SF5, PRO:DNx] +def: "A deoxyhypusine hydroxylase that is encoded in the genome of chicken." [OMA:Q5ZIP3, PRO:DNx] comment: Category=organism-gene. synonym: "chick-DOHH" EXACT PRO-short-label [PRO:DNx] synonym: "deoxyhypusine dioxygenase (chicken)" EXACT [UniProtKB:Q5ZIP3] @@ -218017,7 +218852,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZIR1 name: endophilin-B1 (chicken) namespace: protein -def: "An endophilin-B1 that is encoded in the genome of chicken." [PANTHER:PTHR10661\:SF15, PRO:DNx] +def: "An endophilin-B1 that is encoded in the genome of chicken." [OMA:Q5ZIR1, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SH3GLB1" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_24b23" RELATED Gene-based [UniProtKB:Q5ZIR1] @@ -218035,7 +218870,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZIR5 name: high mobility group nucleosome-binding domain-containing protein 3 (chicken) namespace: protein -def: "A high mobility group nucleosome-binding domain-containing protein 3 that is encoded in the genome of chicken." [PRO:DNx] +def: "A high mobility group nucleosome-binding domain-containing protein 3 that is encoded in the genome of chicken." [OMA:Q5ZIR5, PRO:DNx] comment: Category=organism-gene. synonym: "chick-HMGN3" EXACT PRO-short-label [PRO:DNx] synonym: "HMGN3" RELATED Gene-based [UniProtKB:Q5ZIR5] @@ -218068,7 +218903,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZIU3 name: dual specificity tyrosine-phosphorylation-regulated kinase 2 (chicken) namespace: protein -def: "A dual specificity tyrosine-phosphorylation-regulated kinase 2 that is encoded in the genome of chicken." [OMA:Q5ZIU3, PRO:DNx] +def: "A dual specificity tyrosine-phosphorylation-regulated kinase 2 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-DYRK2" EXACT PRO-short-label [PRO:DNx] synonym: "DYRK2" RELATED Gene-based [UniProtKB:Q5ZIU3] @@ -218103,7 +218938,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZIW5 name: protein VAC14 homolog (chicken) namespace: protein -def: "A protein VAC14 that is encoded in the genome of chicken." [PANTHER:PTHR16023\:SF0, PRO:DNx] +def: "A protein VAC14 that is encoded in the genome of chicken." [OMA:Q5ZIW5, PRO:DNx] comment: Category=organism-gene. synonym: "chick-VAC14" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_23c3" RELATED Gene-based [UniProtKB:Q5ZIW5] @@ -218155,7 +218990,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZIY4 name: ribosome maturation protein SBDS (chicken) namespace: protein -def: "A ribosome maturation protein SBDS that is encoded in the genome of chicken." [PANTHER:PTHR10927\:SF0, PRO:DNx] +def: "A ribosome maturation protein SBDS that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-SBDS" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_22m12" RELATED Gene-based [UniProtKB:Q5ZIY4] @@ -218173,7 +219008,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZIZ4 name: cytosolic purine 5'-nucleotidase (chicken) namespace: protein -def: "A cytosolic purine 5'-nucleotidase that is encoded in the genome of chicken." [OMA:Q5ZIZ4, PANTHER:PTHR12103\:SF1, PRO:DNx] +def: "A cytosolic purine 5'-nucleotidase that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-NT5C2" EXACT PRO-short-label [PRO:DNx] synonym: "cytosolic nucleoside phosphotransferase 5'N (chicken)" EXACT [UniProtKB:Q5ZIZ4] @@ -218225,7 +219060,6 @@ is_a: PR:000029063 ! Gallus gallus protein is_a: PR:000031596 ! SOSS complex subunit C intersection_of: PR:000031596 ! SOSS complex subunit C intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/427331 ! INIP (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] @@ -218249,7 +219083,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZJ39 name: density-regulated protein (chicken) namespace: protein -def: "A density-regulated protein that is encoded in the genome of chicken." [OMA:Q5ZJ39, PANTHER:PTHR12789\:SF0, PRO:DNx] +def: "A density-regulated protein that is encoded in the genome of chicken." [OMA:Q5ZJ39, PRO:DNx] comment: Category=organism-gene. synonym: "chick-DENR" EXACT PRO-short-label [PRO:DNx] synonym: "DENR" RELATED Gene-based [UniProtKB:Q5ZJ39] @@ -218303,7 +219137,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZJ64 name: eukaryotic translation initiation factor 3 subunit M (chicken) namespace: protein -def: "A eukaryotic translation initiation factor 3 subunit M that is encoded in the genome of chicken." [OMA:Q5ZJ64, PANTHER:PTHR15350\:SF3, PRO:DNx] +def: "A eukaryotic translation initiation factor 3 subunit M that is encoded in the genome of chicken." [OMA:Q5ZJ64, PRO:DNx] comment: Category=organism-gene. synonym: "chick-EIF3M" EXACT PRO-short-label [PRO:DNx] synonym: "EIF3M" RELATED Gene-based [UniProtKB:Q5ZJ64] @@ -218338,7 +219172,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZJ81 name: endophilin-B2 (chicken) namespace: protein -def: "An endophilin-B2 that is encoded in the genome of chicken." [OMA:Q5ZJ81, PANTHER:PTHR10661\:SF14, PRO:DNx] +def: "An endophilin-B2 that is encoded in the genome of chicken." [OMA:Q5ZJ81, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SH3GLB2" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_20c13" RELATED Gene-based [UniProtKB:Q5ZJ81] @@ -218404,11 +219238,29 @@ intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/426116 ! LOH12CR1 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: PR:Q5ZJH6 +name: serine/threonine-protein kinase ULK3 (chicken) +namespace: protein +def: "A serine/threonine-protein kinase ULK3 that is encoded in the genome of chicken." [OMA:Q5ZJH6, PRO:DNx] +comment: Category=organism-gene. +synonym: "chick-ULK3" EXACT PRO-short-label [PRO:DNx] +synonym: "RCJMB04_18b17" RELATED Gene-based [UniProtKB:Q5ZJH6] +synonym: "ULK3" RELATED Gene-based [UniProtKB:Q5ZJH6] +synonym: "unc-51-like kinase 3 (chicken)" EXACT [UniProtKB:Q5ZJH6] +xref: UniProtKB:Q5ZJH6 +is_a: PR:000017079 ! serine/threonine-protein kinase ULK3 +is_a: PR:000029063 ! Gallus gallus protein +intersection_of: PR:000017079 ! serine/threonine-protein kinase ULK3 +intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00015012382 ! ULK3 (chicken) +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: PR:Q5ZJI0 name: protein-tyrosine sulfotransferase 2 (chicken) namespace: protein -def: "A protein-tyrosine sulfotransferase 2 that is encoded in the genome of chicken." [OMA:Q5ZJI0, PANTHER:PTHR12788\:SF0, PRO:DNx] +def: "A protein-tyrosine sulfotransferase 2 that is encoded in the genome of chicken." [OMA:Q5ZJI0, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TPST2" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_17p1" RELATED Gene-based [UniProtKB:Q5ZJI0] @@ -218446,7 +219298,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZJI9 name: ubiquitin-associated domain-containing protein 1 (chicken) namespace: protein -def: "A ubiquitin-associated domain-containing protein 1 that is encoded in the genome of chicken." [PANTHER:PTHR13020\:SF2, PRO:DNx] +def: "A ubiquitin-associated domain-containing protein 1 that is encoded in the genome of chicken." [OMA:Q5ZJI9, PRO:DNx] comment: Category=organism-gene. synonym: "chick-UBAC1" EXACT PRO-short-label [PRO:DNx] synonym: "E3 ubiquitin-protein ligase subunit KPC2 (chicken)" EXACT [UniProtKB:Q5ZJI9] @@ -218468,7 +219320,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZJJ8 name: ubiquitin-like domain-containing CTD phosphatase 1 (chicken) namespace: protein -def: "A ubiquitin-like domain-containing CTD phosphatase 1 that is encoded in the genome of chicken." [OMA:Q5ZJJ8, PANTHER:PTHR13730\:SF0, PRO:DNx] +def: "A ubiquitin-like domain-containing CTD phosphatase 1 that is encoded in the genome of chicken." [OMA:Q5ZJJ8, PRO:DNx] comment: Category=organism-gene. synonym: "chick-UBLCP1" EXACT PRO-short-label [PRO:DNx] synonym: "nuclear proteasome inhibitor UBLCP1 (chicken)" EXACT [UniProtKB:Q5ZJJ8] @@ -218486,7 +219338,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZJK4 name: serine/threonine-protein kinase 4 (chicken) namespace: protein -def: "A serine/threonine-protein kinase 4 that is encoded in the genome of chicken." [PRO:DNx] +def: "A serine/threonine-protein kinase 4 that is encoded in the genome of chicken." [OMA:Q5ZJK4, PRO:DNx] comment: Category=organism-gene. synonym: "chick-STK4" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_17i1" RELATED Gene-based [UniProtKB:Q5ZJK4] @@ -218536,7 +219388,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZJN4 name: ubiquitin carboxyl-terminal hydrolase 10 (chicken) namespace: protein -def: "A ubiquitin carboxyl-terminal hydrolase 10 that is encoded in the genome of chicken." [PANTHER:PTHR24006\:SF40, PRO:DNx] +def: "A ubiquitin carboxyl-terminal hydrolase 10 that is encoded in the genome of chicken." [OMA:Q5ZJN4, PRO:DNx] comment: Category=organism-gene. synonym: "chick-USP10" EXACT PRO-short-label [PRO:DNx] synonym: "deubiquitinating enzyme 10 (chicken)" EXACT [UniProtKB:Q5ZJN4] @@ -218573,7 +219425,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZJQ7 name: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 (chicken) namespace: protein -def: "An RNA polymerase II subunit A C-terminal domain phosphatase SSU72 that is encoded in the genome of chicken." [OMA:Q5ZJQ7, PANTHER:PTHR20383\:SF9, PRO:DNx] +def: "An RNA polymerase II subunit A C-terminal domain phosphatase SSU72 that is encoded in the genome of chicken." [OMA:Q5ZJQ7, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SSU72" EXACT PRO-short-label [PRO:DNx] synonym: "CTD phosphatase SSU72 (chicken)" EXACT [UniProtKB:Q5ZJQ7] @@ -218609,7 +219461,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZJV6 name: calcipressin-3 (chicken) namespace: protein -def: "A calcipressin-3 that is encoded in the genome of chicken." [OMA:Q5ZJV6, PANTHER:PTHR10300\:SF6, PRO:DNx] +def: "A calcipressin-3 that is encoded in the genome of chicken." [OMA:Q5ZJV6, PRO:DNx] comment: Category=organism-gene. synonym: "chick-RCAN3" EXACT PRO-short-label [PRO:DNx] synonym: "RCAN3" RELATED Gene-based [UniProtKB:Q5ZJV6] @@ -218627,7 +219479,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZJW6 name: NF-kappa-B inhibitor-interacting Ras-like protein 2 (chicken) namespace: protein -def: "An NF-kappa-B inhibitor-interacting Ras-like protein 2 that is encoded in the genome of chicken." [OMA:Q5ZJW6, PANTHER:PTHR24070\:SF275, PRO:DNx] +def: "An NF-kappa-B inhibitor-interacting Ras-like protein 2 that is encoded in the genome of chicken." [OMA:Q5ZJW6, PRO:DNx] comment: Category=organism-gene. synonym: "chick-NKIRAS2" EXACT PRO-short-label [PRO:DNx] synonym: "I-kappa-B-interacting Ras-like protein 2 (chicken)" EXACT [UniProtKB:Q5ZJW6] @@ -218647,7 +219499,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZJZ4 name: solute carrier family 35 member G2 (chicken) namespace: protein -def: "A solute carrier family 35 member G2 that is encoded in the genome of chicken." [PRO:DNx] +def: "A solute carrier family 35 member G2 that is encoded in the genome of chicken." [OMA:Q5ZJZ4, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SLC35G2" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_14e7" RELATED Gene-based [UniProtKB:Q5ZJZ4] @@ -218703,7 +219555,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZK05 name: Toll-interacting protein (chicken) namespace: protein -def: "A Toll-interacting protein that is encoded in the genome of chicken." [PANTHER:PTHR16461\:SF3, PRO:DNx] +def: "A Toll-interacting protein that is encoded in the genome of chicken." [OMA:Q5ZK05, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TOLLIP" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_14a3" RELATED Gene-based [UniProtKB:Q5ZK05] @@ -218720,7 +219572,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZK09 name: protein Hikeshi (chicken) namespace: protein -def: "A protein Hikeshi that is encoded in the genome of chicken." [OMA:Q5ZK09, PRO:DNx] +def: "A protein Hikeshi that is encoded in the genome of chicken." [PRO:DAN] comment: Category=organism-gene. synonym: "chick-HIKESHI" EXACT PRO-short-label [PRO:DNx] synonym: "HIKESHI" RELATED Gene-based [UniProtKB:Q5ZK09] @@ -218735,20 +219587,22 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] id: PR:Q5ZK44 -name: cotranscriptional regulator FAM172A homolog (chicken) +name: cotranscriptional regulator ARB2A homolog (chicken) namespace: protein -def: "A cotranscriptional regulator FAM172A that is encoded in the genome of chicken." [OMA:Q5ZK44, PRO:DNx] +def: "A cotranscriptional regulator ARB2A that is encoded in the genome of chicken." [OMA:Q5ZK44, PRO:DNx] comment: Category=organism-gene. -synonym: "chick-FAM172A" EXACT PRO-short-label [PRO:DNx] +synonym: "ARB2A" RELATED Gene-based [UniProtKB:Q5ZK44] +synonym: "chick-ARB2A" EXACT PRO-short-label [PRO:DNx] +synonym: "cotranscriptional regulator FAM172A homolog (chicken)" EXACT [UniProtKB:Q5ZK44] synonym: "FAM172A" RELATED Gene-based [UniProtKB:Q5ZK44] synonym: "protein FAM172A (chicken)" EXACT [UniProtKB:Q5ZK44] synonym: "RCJMB04_13e16" RELATED Gene-based [UniProtKB:Q5ZK44] xref: UniProtKB:Q5ZK44 is_a: PR:000029063 ! Gallus gallus protein -is_a: PR:000030727 ! cotranscriptional regulator FAM172A -intersection_of: PR:000030727 ! cotranscriptional regulator FAM172A +is_a: PR:000030727 ! cotranscriptional regulator ARB2A +intersection_of: PR:000030727 ! cotranscriptional regulator ARB2A intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/427109 ! FAM172A (chicken) +relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/427109 ! ARB2A (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] @@ -218794,7 +219648,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZK77 name: biogenesis of lysosome-related organelles complex 1 subunit 5 (chicken) namespace: protein -def: "A protein Muted that is encoded in the genome of chicken." [PRO:DNx] +def: "A protein Muted that is encoded in the genome of chicken." [OMA:Q5ZK77, PRO:DNx] comment: Category=organism-gene. synonym: "BLOC-1 subunit 5 (chicken)" EXACT [UniProtKB:Q5ZK77] synonym: "BLOC1S5" RELATED Gene-based [UniProtKB:Q5ZK77] @@ -218814,7 +219668,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZK84 name: aldo-keto reductase family 1 member A1 (chicken) namespace: protein -def: "An aldo-keto reductase family 1 member A1 that is encoded in the genome of chicken." [PRO:DNx] +def: "An aldo-keto reductase family 1 member A1 that is encoded in the genome of chicken." [OMA:Q5ZK84, PRO:DNx] comment: Category=organism-gene. synonym: "AKR1A1" RELATED Gene-based [UniProtKB:Q5ZK84] synonym: "alcohol dehydrogenase [NADP(+)] (chicken)" EXACT [UniProtKB:Q5ZK84] @@ -218833,7 +219687,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZK88 name: paraspeckle component 1 (chicken) namespace: protein -def: "A paraspeckle component 1 that is encoded in the genome of chicken." [OMA:Q5ZK88, PANTHER:PTHR23189\:SF14, PRO:DNx] +def: "A paraspeckle component 1 that is encoded in the genome of chicken." [OMA:Q5ZK88, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PSPC1" EXACT PRO-short-label [PRO:DNx] synonym: "PSPC1" RELATED Gene-based [UniProtKB:Q5ZK88] @@ -218850,7 +219704,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZK90 name: arylsulfatase K (chicken) namespace: protein -def: "An arylsulfatase K that is encoded in the genome of chicken." [PANTHER:PTHR10342\:SF9, PRO:DNx] +def: "An arylsulfatase K that is encoded in the genome of chicken." [OMA:Q5ZK90, PRO:DNx] comment: Category=organism-gene. synonym: "ARSK" RELATED Gene-based [UniProtKB:Q5ZK90] synonym: "ASK (chicken)" EXACT [UniProtKB:Q5ZK90] @@ -218885,7 +219739,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKA4 name: eukaryotic translation initiation factor 3 subunit J (chicken) namespace: protein -def: "A eukaryotic translation initiation factor 3 subunit J that is encoded in the genome of chicken." [OMA:Q5ZKA4, PANTHER:PTHR21681\:SF0, PRO:DNx] +def: "A eukaryotic translation initiation factor 3 subunit J that is encoded in the genome of chicken." [OMA:Q5ZKA4, PRO:DNx] comment: Category=organism-gene. synonym: "chick-EIF3J" EXACT PRO-short-label [PRO:DNx] synonym: "eIF-3-alpha (chicken)" EXACT [UniProtKB:Q5ZKA4] @@ -218907,7 +219761,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKA5 name: bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial (chicken) namespace: protein -def: "A bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial that is encoded in the genome of chicken." [PANTHER:PTHR10025\:SF17, PRO:DNx] +def: "A bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-MTHFD2" EXACT PRO-short-label [PRO:DNx] synonym: "MTHFD2" RELATED Gene-based [UniProtKB:Q5ZKA5] @@ -218924,7 +219778,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKB6 name: cysteine-rich PDZ-binding protein (chicken) namespace: protein -def: "A cysteine-rich PDZ-binding protein that is encoded in the genome of chicken." [OMA:Q5ZKB6, PANTHER:PTHR11800\:SF16, PRO:DNx] +def: "A cysteine-rich PDZ-binding protein that is encoded in the genome of chicken." [OMA:Q5ZKB6, PRO:DNx] comment: Category=organism-gene. synonym: "chick-CRIPT" EXACT PRO-short-label [PRO:DNx] synonym: "CRIPT" RELATED Gene-based [UniProtKB:Q5ZKB6] @@ -218961,7 +219815,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKC1 name: eukaryotic translation initiation factor 2A (chicken) namespace: protein -def: "A eukaryotic translation initiation factor 2A that is encoded in the genome of chicken." [PANTHER:PTHR13227\:SF5, PRO:DNx] +def: "A eukaryotic translation initiation factor 2A that is encoded in the genome of chicken." [OMA:Q5ZKC1, PRO:DNx] comment: Category=organism-gene. synonym: "chick-EIF2A" EXACT PRO-short-label [PRO:DNx] synonym: "eIF-2A (chicken)" RELATED [UniProtKB:Q5ZKC1] @@ -218996,7 +219850,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKD4 name: N-acetylneuraminate lyase (chicken) namespace: protein -def: "An N-acetylneuraminate lyase that is encoded in the genome of chicken." [PANTHER:PTHR12128\:SF10, PRO:DNx] +def: "An N-acetylneuraminate lyase that is encoded in the genome of chicken." [OMA:Q5ZKD4, PRO:DNx] comment: Category=organism-gene. synonym: "chick-NPL" EXACT PRO-short-label [PRO:DNx] synonym: "N-acetylneuraminate pyruvate-lyase (chicken)" EXACT [UniProtKB:Q5ZKD4] @@ -219038,7 +219892,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKF5 name: S-phase kinase-associated protein 1 (chicken) namespace: protein -def: "An S-phase kinase-associated protein 1A that is encoded in the genome of chicken." [OMA:Q5ZKF5, PANTHER:PTHR11165\:SF21, PRO:DNx] +def: "An S-phase kinase-associated protein 1A that is encoded in the genome of chicken." [OMA:Q5ZKF5, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SKP1" EXACT PRO-short-label [PRO:DNx] synonym: "cyclin-A/CDK2-associated protein p19 (chicken)" EXACT [UniProtKB:Q5ZKF5] @@ -219060,7 +219914,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKF6 name: 7-methylguanosine phosphate-specific 5'-nucleotidase (chicken) namespace: protein -def: "A 7-methylguanosine phosphate-specific 5'-nucleotidase that is encoded in the genome of chicken." [PANTHER:PTHR13045\:SF0, PRO:DNx] +def: "A 7-methylguanosine phosphate-specific 5'-nucleotidase that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "7-methylguanosine nucleotidase (chicken)" RELATED [UniProtKB:Q5ZKF6] synonym: "chick-NT5C3B" EXACT PRO-short-label [PRO:DNx] @@ -219083,7 +219937,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKH3 name: polycomb protein EED (chicken) namespace: protein -def: "A polycomb protein EED that is encoded in the genome of chicken." [OMA:Q5ZKH3, PANTHER:PTHR10253\:SF3, PRO:DNx] +def: "A polycomb protein EED that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-EED" EXACT PRO-short-label [PRO:DNx] synonym: "EED" RELATED Gene-based [UniProtKB:Q5ZKH3] @@ -219100,7 +219954,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKH4 name: nuclear distribution protein nudE-like 1 (chicken) namespace: protein -def: "A nuclear distribution protein nudE-like 1 that is encoded in the genome of chicken." [OMA:Q5ZKH4, PANTHER:PTHR10921\:SF0, PRO:DNx] +def: "A nuclear distribution protein nudE-like 1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-NDEL1" EXACT PRO-short-label [PRO:DNx] synonym: "NDEL1" RELATED Gene-based [UniProtKB:Q5ZKH4] @@ -219117,7 +219971,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKI2 name: 2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 (chicken) namespace: protein -def: "A 2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 that is encoded in the genome of chicken." [PANTHER:PTHR10762\:SF2, PRO:DNx] +def: "A 2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-DPH2" EXACT PRO-short-label [PRO:DNx] synonym: "diphthamide biosynthesis protein 2 (chicken)" EXACT [UniProtKB:Q5ZKI2] @@ -219137,7 +219991,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKI6 name: glucoside xylosyltransferase 1 (chicken) namespace: protein -def: "A glucoside xylosyltransferase 1 that is encoded in the genome of chicken." [PRO:DNx] +def: "A glucoside xylosyltransferase 1 that is encoded in the genome of chicken." [OMA:Q5ZKI6, PRO:DNx] comment: Category=organism-gene. synonym: "chick-GXYLT1" EXACT PRO-short-label [PRO:DNx] synonym: "GLT8D3" RELATED Gene-based [UniProtKB:Q5ZKI6] @@ -219173,7 +220027,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKK1 name: microtubule-associated protein RP/EB family member 2 (chicken) namespace: protein -def: "A microtubule-associated protein RP/EB family member 2 that is encoded in the genome of chicken." [PANTHER:PTHR10623\:SF7, PRO:DNx] +def: "A microtubule-associated protein RP/EB family member 2 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-MAPRE2" EXACT PRO-short-label [PRO:DNx] synonym: "MAPRE2" RELATED Gene-based [UniProtKB:Q5ZKK1] @@ -219183,7 +220037,6 @@ is_a: PR:000010171 ! microtubule-associated protein RP/EB family member 2 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000010171 ! microtubule-associated protein RP/EB family member 2 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/421105 ! MAPRE2 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] @@ -219207,7 +220060,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKM0 name: dysbindin (chicken) namespace: protein -def: "A dysbindin that is encoded in the genome of chicken." [OMA:Q5ZKM0, PANTHER:PTHR16294\:SF0, PRO:DNx] +def: "A dysbindin that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "biogenesis of lysosome-related organelles complex 1 subunit 8 (chicken)" EXACT [UniProtKB:Q5ZKM0] synonym: "BLOC-1 subunit 8 (chicken)" EXACT [UniProtKB:Q5ZKM0] @@ -219248,7 +220101,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKP2 name: cobalamin trafficking protein CblD (chicken) namespace: protein -def: "A cobalamin trafficking protein CblD that is encoded in the genome of chicken." [OMA:Q5ZKP2, PANTHER:PTHR13192\:SF0, PRO:DNx] +def: "A cobalamin trafficking protein CblD that is encoded in the genome of chicken." [OMA:Q5ZKP2, PRO:DNx] comment: Category=organism-gene. synonym: "CblD (chicken)" EXACT [UniProtKB:Q5ZKP2] synonym: "chick-MMADHC" EXACT PRO-short-label [PRO:DNx] @@ -219284,7 +220137,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKQ5 name: protein GOLM2 (chicken) namespace: protein -def: "A protein GOLM2 that is encoded in the genome of chicken." [PANTHER:PTHR15896\:SF4, PRO:DNx] +def: "A protein GOLM2 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "cancer susceptibility candidate gene 4 protein homolog (chicken)" EXACT [UniProtKB:Q5ZKQ5] synonym: "CASC4" RELATED Gene-based [UniProtKB:Q5ZKQ5] @@ -219304,7 +220157,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKQ6 name: DNA polymerase epsilon subunit 2 (chicken) namespace: protein -def: "A DNA polymerase epsilon subunit 2 that is encoded in the genome of chicken." [OMA:Q5ZKQ6, PANTHER:PTHR12708\:SF0, PRO:DNx] +def: "A DNA polymerase epsilon subunit 2 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-POLE2" EXACT PRO-short-label [PRO:DNx] synonym: "DNA polymerase epsilon subunit B (chicken)" EXACT [UniProtKB:Q5ZKQ6] @@ -219393,7 +220246,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKS6 name: beclin-1 (chicken) namespace: protein -def: "A beclin-1 that is encoded in the genome of chicken." [PANTHER:PTHR12768\:SF2, PRO:DNx] +def: "A beclin-1 that is encoded in the genome of chicken." [OMA:Q5ZKS6, PRO:DNx] comment: Category=organism-gene. synonym: "BECN1" RELATED Gene-based [UniProtKB:Q5ZKS6] synonym: "chick-BECN1" EXACT PRO-short-label [PRO:DNx] @@ -219410,7 +220263,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKT6 name: EEF1A lysine methyltransferase 1 (chicken) namespace: protein -def: "An EEF1A lysine methyltransferase 1 that is encoded in the genome of chicken." [OMA:Q5ZKT6, PANTHER:PTHR13200\:SF0, PRO:DNx] +def: "An EEF1A lysine methyltransferase 1 that is encoded in the genome of chicken." [OMA:Q5ZKT6, PRO:DNx] comment: Category=organism-gene. synonym: "chick-EEF1AKMT1" EXACT PRO-short-label [PRO:DNx] synonym: "EEF1AKMT1" RELATED Gene-based [UniProtKB:Q5ZKT6] @@ -219450,7 +220303,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKU5 name: Ras-related protein Rab-14 (chicken) namespace: protein -def: "A Ras-related protein Rab-14 that is encoded in the genome of chicken." [OMA:Q5ZKU5, PANTHER:PTHR24073\:SF248, PRO:DNx] +def: "A Ras-related protein Rab-14 that is encoded in the genome of chicken." [OMA:Q5ZKU5, PRO:DNx] comment: Category=organism-gene. synonym: "chick-RAB14" EXACT PRO-short-label [PRO:DNx] synonym: "RAB14" RELATED Gene-based [UniProtKB:Q5ZKU5] @@ -219467,7 +220320,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKV4 name: cytosolic Fe-S cluster assembly factor NUBP2 (chicken) namespace: protein -def: "A cytosolic Fe-S cluster assembly factor NUBP2 that is encoded in the genome of chicken." [OMA:Q5ZKV4, PANTHER:PTHR23264\:SF9, PRO:DNx] +def: "A cytosolic Fe-S cluster assembly factor NUBP2 that is encoded in the genome of chicken." [OMA:Q5ZKV4, PRO:DNx] comment: Category=organism-gene. synonym: "chick-NUBP2" EXACT PRO-short-label [PRO:DNx] synonym: "NBP 2 (chicken)" EXACT [UniProtKB:Q5ZKV4] @@ -219486,7 +220339,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKW2 name: protein LZIC (chicken) namespace: protein -def: "A protein LZIC that is encoded in the genome of chicken." [OMA:Q5ZKW2, PANTHER:PTHR16505\:SF1, PRO:DNx] +def: "A protein LZIC that is encoded in the genome of chicken." [OMA:Q5ZKW2, PRO:DNx] comment: Category=organism-gene. synonym: "chick-LZIC" EXACT PRO-short-label [PRO:DNx] synonym: "leucine zipper and CTNNBIP1 domain-containing protein (chicken)" EXACT [UniProtKB:Q5ZKW2] @@ -219505,7 +220358,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKW5 name: ADP-ribosylation factor-like protein 2-binding protein (chicken) namespace: protein -def: "An ADP-ribosylation factor-like protein 2-binding protein that is encoded in the genome of chicken." [OMA:Q5ZKW5, PANTHER:PTHR15487\:SF2, PRO:DNx] +def: "An ADP-ribosylation factor-like protein 2-binding protein that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "ARF-like 2-binding protein (chicken)" EXACT [UniProtKB:Q5ZKW5] synonym: "ARL2BP" RELATED Gene-based [UniProtKB:Q5ZKW5] @@ -219559,7 +220412,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKY4 name: inhibitor of growth protein 4 (chicken) namespace: protein -def: "An inhibitor of growth protein 4 that is encoded in the genome of chicken." [OMA:Q5ZKY4, PANTHER:PTHR10333\:SF40, PRO:DNx] +def: "An inhibitor of growth protein 4 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-ING4" EXACT PRO-short-label [PRO:DNx] synonym: "ING4" RELATED Gene-based [UniProtKB:Q5ZKY4] @@ -219577,7 +220430,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKY9 name: mediator of RNA polymerase II transcription subunit 20 (chicken) namespace: protein -def: "A mediator of RNA polymerase II transcription subunit 20 that is encoded in the genome of chicken." [OMA:Q5ZKY9, PANTHER:PTHR12465\:SF0, PRO:DNx] +def: "A mediator of RNA polymerase II transcription subunit 20 that is encoded in the genome of chicken." [OMA:Q5ZKY9, PRO:DNx] comment: Category=organism-gene. synonym: "chick-MED20" EXACT PRO-short-label [PRO:DNx] synonym: "MED20" RELATED Gene-based [UniProtKB:Q5ZKY9] @@ -219597,10 +220450,14 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZKZ4 name: DnaJ homolog subfamily C member 16 (chicken) namespace: protein -def: "A DnaJ homolog subfamily C member 16 that is encoded in the genome of chicken." [PRO:DNx] +def: "A DnaJ homolog subfamily C member 16 that is encoded in the genome of chicken." [OMA:Q5ZKZ4, PRO:DNx] comment: Category=organism-gene. synonym: "chick-DNAJC16" EXACT PRO-short-label [PRO:DNx] synonym: "DNAJC16" RELATED Gene-based [UniProtKB:Q5ZKZ4] +synonym: "endoplasmic reticulum DNA J domain-containing protein 8 (chicken)" EXACT [UniProtKB:Q5ZKZ4] +synonym: "ER-resident protein ERdj8 (chicken)" EXACT [UniProtKB:Q5ZKZ4] +synonym: "ERDJ8" RELATED Gene-based [UniProtKB:Q5ZKZ4] +synonym: "ERdj8 (chicken)" EXACT [UniProtKB:Q5ZKZ4] synonym: "RCJMB04_8j20" RELATED Gene-based [UniProtKB:Q5ZKZ4] xref: UniProtKB:Q5ZKZ4 is_a: PR:000029063 ! Gallus gallus protein @@ -219614,7 +220471,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZL00 name: ER membrane protein complex subunit 1 (chicken) namespace: protein -def: "An ER membrane protein complex subunit 1 that is encoded in the genome of chicken." [PRO:DNx] +def: "An ER membrane protein complex subunit 1 that is encoded in the genome of chicken." [OMA:Q5ZL00, PRO:DNx] comment: Category=organism-gene. synonym: "chick-EMC1" EXACT PRO-short-label [PRO:DNx] synonym: "EMC1" RELATED Gene-based [UniProtKB:Q5ZL00] @@ -219631,7 +220488,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZL19 name: syntaxin-6 (chicken) namespace: protein -def: "A syntaxin-6 that is encoded in the genome of chicken." [OMA:Q5ZL19, PANTHER:PTHR12380\:SF10, PRO:DNx] +def: "A syntaxin-6 that is encoded in the genome of chicken." [OMA:Q5ZL19, PRO:DNx] comment: Category=organism-gene. synonym: "chick-STX6" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_8d16" RELATED Gene-based [UniProtKB:Q5ZL19] @@ -219669,7 +220526,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZL26 name: phosphoribosyl pyrophosphate synthase-associated protein 2 (chicken) namespace: protein -def: "A phosphoribosyl pyrophosphate synthase-associated protein 2 that is encoded in the genome of chicken." [PANTHER:PTHR10210\:SF29, PRO:DNx] +def: "A phosphoribosyl pyrophosphate synthase-associated protein 2 that is encoded in the genome of chicken." [OMA:Q5ZL26, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PRPSAP2" EXACT PRO-short-label [PRO:DNx] synonym: "PRPP synthase-associated protein 2 (chicken)" EXACT [UniProtKB:Q5ZL26] @@ -219687,7 +220544,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZL38 name: SAGA-associated factor 29 (chicken) namespace: protein -def: "A SAGA-associated factor 29 that is encoded in the genome of chicken." [OMA:Q5ZL38, PANTHER:PTHR21539\:SF0, PRO:DNx] +def: "A SAGA-associated factor 29 that is encoded in the genome of chicken." [PRO:DAN] comment: Category=organism-gene. synonym: "CCDC101" RELATED Gene-based [UniProtKB:Q5ZL38] synonym: "chick-SGF29" EXACT PRO-short-label [PRO:DNx] @@ -219726,7 +220583,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZL43 name: acireductone dioxygenase (chicken) namespace: protein -def: "An acireductone dioxygenase that is encoded in the genome of chicken." [OMA:Q5ZL43, PANTHER:PTHR23418\:SF0, PRO:DNx] +def: "An acireductone dioxygenase that is encoded in the genome of chicken." [OMA:Q5ZL43, PRO:DNx] comment: Category=organism-gene. synonym: "acireductone dioxygenase (Fe(2+)-requiring) (chicken)" EXACT [UniProtKB:Q5ZL43] synonym: "acireductone dioxygenase (Ni(2+)-requiring) (chicken)" EXACT [UniProtKB:Q5ZL43] @@ -219770,7 +220627,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZL67 name: endoplasmic reticulum membrane sensor NFE2L1 (chicken) namespace: protein -def: "An endoplasmic reticulum membrane sensor NFE2L1 that is encoded in the genome of chicken." [OMA:Q5ZL67, PANTHER:PTHR24411\:SF186, PRO:DNx] +def: "An endoplasmic reticulum membrane sensor NFE2L1 that is encoded in the genome of chicken." [OMA:Q5ZL67, PRO:DNx] comment: Category=organism-gene. synonym: "chick-NFE2L1" EXACT PRO-short-label [PRO:DNx] synonym: "NF-E2-related factor 1 (chicken)" EXACT [UniProtKB:Q5ZL67] @@ -219792,7 +220649,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZL74 name: vesicle-associated membrane protein 7 (chicken) namespace: protein -def: "A vesicle-associated membrane protein 7 that is encoded in the genome of chicken." [OMA:Q5ZL74, PANTHER:PTHR21136\:SF8, PRO:DNx] +def: "A vesicle-associated membrane protein 7 that is encoded in the genome of chicken." [OMA:Q5ZL74, PRO:DNx] comment: Category=organism-gene. synonym: "chick-VAMP7" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_7f19" RELATED Gene-based [UniProtKB:Q5ZL74] @@ -219811,7 +220668,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZL77 name: synembryn-A (chicken) namespace: protein -def: "A synembryn-A that is encoded in the genome of chicken." [OMA:Q5ZL77, PANTHER:PTHR12425\:SF0, PRO:DNx] +def: "A synembryn-A that is encoded in the genome of chicken." [OMA:Q5ZL77, PRO:DNx] comment: Category=organism-gene. synonym: "chick-RIC8A" EXACT PRO-short-label [PRO:DNx] synonym: "protein Ric-8A (chicken)" EXACT [UniProtKB:Q5ZL77] @@ -219845,7 +220702,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZLC7 name: microtubule-associated protein RP/EB family member 1 (chicken) namespace: protein -def: "A microtubule-associated protein RP/EB family member 1 that is encoded in the genome of chicken." [PANTHER:PTHR10623\:SF8, PRO:DNx] +def: "A microtubule-associated protein RP/EB family member 1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-MAPRE1" EXACT PRO-short-label [PRO:DNx] synonym: "MAPRE1" RELATED Gene-based [UniProtKB:Q5ZLC7] @@ -219862,7 +220719,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZLC9 name: golgin subfamily A member 7 (chicken) namespace: protein -def: "A golgin subfamily A member 7 that is encoded in the genome of chicken." [PANTHER:PTHR13254\:SF0, PRO:DNx] +def: "A golgin subfamily A member 7 that is encoded in the genome of chicken." [OMA:Q5ZLC9, PRO:DNx] comment: Category=organism-gene. synonym: "chick-GOLGA7" EXACT PRO-short-label [PRO:DNx] synonym: "GOLGA7" RELATED Gene-based [UniProtKB:Q5ZLC9] @@ -219879,7 +220736,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZLD7 name: vacuolar protein sorting-associated protein 53 homolog (chicken) namespace: protein -def: "A vacuolar protein sorting-associated protein 53 that is encoded in the genome of chicken." [OMA:Q5ZLD7, PANTHER:PTHR12820\:SF0, PRO:DNx] +def: "A vacuolar protein sorting-associated protein 53 that is encoded in the genome of chicken." [OMA:Q5ZLD7, PRO:DNx] comment: Category=organism-gene. synonym: "chick-VPS53" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_6k3" RELATED Gene-based [UniProtKB:Q5ZLD7] @@ -219896,7 +220753,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZLF0 name: Hsc70-interacting protein (chicken) namespace: protein -def: "An Hsc70-interacting protein that is encoded in the genome of chicken." [PANTHER:PTHR22904\:SF34, PRO:DNx] +def: "An Hsc70-interacting protein that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-ST13" EXACT PRO-short-label [PRO:DNx] synonym: "FAM10A1" RELATED Gene-based [UniProtKB:Q5ZLF0] @@ -220012,7 +220869,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZLJ4 name: transmembrane protein 70, mitochondrial (chicken) namespace: protein -def: "A transmembrane protein 70, mitochondrial that is encoded in the genome of chicken." [PANTHER:PTHR13281\:SF0, PRO:DNx] +def: "A transmembrane protein 70, mitochondrial that is encoded in the genome of chicken." [OMA:Q5ZLJ4, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TMEM70" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_5o22" RELATED Gene-based [UniProtKB:Q5ZLJ4] @@ -220029,7 +220886,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZLK2 name: UBX domain-containing protein 2B (chicken) namespace: protein -def: "A UBX domain-containing protein 2B that is encoded in the genome of chicken." [OMA:Q5ZLK2, PANTHER:PTHR23333\:SF14, PRO:DNx] +def: "A UBX domain-containing protein 2B that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-UBXN2B" EXACT PRO-short-label [PRO:DNx] synonym: "NSFL1 cofactor p37 (chicken)" EXACT [UniProtKB:Q5ZLK2] @@ -220048,7 +220905,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZLK5 name: prolyl 4-hydroxylase subunit alpha-2 (chicken) namespace: protein -def: "A prolyl 4-hydroxylase subunit alpha-2 that is encoded in the genome of chicken." [PANTHER:PTHR10869\:SF41, PRO:DNx] +def: "A prolyl 4-hydroxylase subunit alpha-2 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "4-PH alpha-2 (chicken)" EXACT [UniProtKB:Q5ZLK5] synonym: "chick-P4HA2" EXACT PRO-short-label [PRO:DNx] @@ -220067,7 +220924,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZLK7 name: hypoxia up-regulated protein 1 (chicken) namespace: protein -def: "A hypoxia up-regulated protein 1 that is encoded in the genome of chicken." [PANTHER:PTHR19375\:SF7, PRO:DNx] +def: "A hypoxia up-regulated protein 1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-HYOU1" EXACT PRO-short-label [PRO:DNx] synonym: "HYOU1" RELATED Gene-based [UniProtKB:Q5ZLK7] @@ -220077,14 +220934,13 @@ is_a: PR:000008853 ! hypoxia up-regulated protein 1 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000008853 ! hypoxia up-regulated protein 1 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/428251 ! HYOU1 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] id: PR:Q5ZLL5 name: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial (chicken) namespace: protein -def: "A 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial that is encoded in the genome of chicken." [PRO:DNx] +def: "A 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial that is encoded in the genome of chicken." [OMA:Q5ZLL5, PRO:DNx] comment: Category=organism-gene. synonym: "chick-COQ5" EXACT PRO-short-label [PRO:DNx] synonym: "COQ5" RELATED Gene-based [UniProtKB:Q5ZLL5] @@ -220102,7 +220958,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZLL9 name: breast cancer metastasis-suppressor 1-like protein (chicken) namespace: protein -def: "A breast cancer metastasis-suppressor 1-like protein that is encoded in the genome of chicken." [PANTHER:PTHR21964\:SF2, PRO:DNx] +def: "A breast cancer metastasis-suppressor 1-like protein that is encoded in the genome of chicken." [OMA:Q5ZLL9, PRO:DNx] comment: Category=organism-gene. synonym: "BRMS1L" RELATED Gene-based [UniProtKB:Q5ZLL9] synonym: "chick-BRMS1L" EXACT PRO-short-label [PRO:DNx] @@ -220135,7 +220991,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZLN4 name: flap endonuclease 1 (chicken) namespace: protein -def: "A flap endonuclease 1 that is encoded in the genome of chicken." [OMA:Q5ZLN4, PANTHER:PTHR11081\:SF9, PRO:DNx] +def: "A flap endonuclease 1 that is encoded in the genome of chicken." [OMA:Q5ZLN4, PRO:DNx] comment: Category=organism-gene. synonym: "chick-FEN1" EXACT PRO-short-label [PRO:DNx] synonym: "FEN-1 (chicken)" EXACT [UniProtKB:Q5ZLN4] @@ -220154,7 +221010,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZLN5 name: TAR DNA-binding protein 43 (chicken) namespace: protein -def: "A TAR DNA-binding protein 43 that is encoded in the genome of chicken." [PANTHER:PTHR24011\:SF6, PRO:DNx] +def: "A TAR DNA-binding protein 43 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-TARDBP" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_5g9" RELATED Gene-based [UniProtKB:Q5ZLN5] @@ -220206,7 +221062,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZLV2 name: peptidyl-prolyl cis-trans isomerase-like 3 (chicken) namespace: protein -def: "A peptidyl-prolyl cis-trans isomerase-like 3 that is encoded in the genome of chicken." [OMA:Q5ZLV2, PANTHER:PTHR11071\:SF38, PRO:DNx] +def: "A peptidyl-prolyl cis-trans isomerase-like 3 that is encoded in the genome of chicken." [OMA:Q5ZLV2, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PPIL3" EXACT PRO-short-label [PRO:DNx] synonym: "cyclophilin-like protein PPIL3 (chicken)" EXACT [UniProtKB:Q5ZLV2] @@ -220226,12 +221082,13 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZLX2 name: eukaryotic translation initiation factor 2 subunit 1 (chicken) namespace: protein -def: "A eukaryotic translation initiation factor 2 subunit 1 that is encoded in the genome of chicken." [OMA:Q5ZLX2, PANTHER:PTHR10602\:SF0, PRO:DNx] +def: "A eukaryotic translation initiation factor 2 subunit 1 that is encoded in the genome of chicken." [OMA:Q5ZLX2, PRO:DNx] comment: Category=organism-gene. synonym: "chick-EIF2S1" EXACT PRO-short-label [PRO:DNx] synonym: "eIF-2-alpha (chicken)" EXACT [UniProtKB:Q5ZLX2] synonym: "eIF-2A (chicken)" RELATED [UniProtKB:Q5ZLX2] synonym: "eIF-2alpha (chicken)" EXACT [UniProtKB:Q5ZLX2] +synonym: "eIF2-alpha (chicken)" EXACT [UniProtKB:Q5ZLX2] synonym: "EIF2A" RELATED Gene-based [UniProtKB:Q5ZLX2] synonym: "EIF2S1" RELATED Gene-based [UniProtKB:Q5ZLX2] synonym: "eukaryotic translation initiation factor 2 subunit alpha (chicken)" EXACT [UniProtKB:Q5ZLX2] @@ -220248,7 +221105,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZLY2 name: hydroxyacylglutathione hydrolase-like protein (chicken) namespace: protein -def: "A hydroxyacylglutathione hydrolase-like protein that is encoded in the genome of chicken." [OMA:Q5ZLY2, PANTHER:PTHR11935\:SF7, PRO:DNx] +def: "A hydroxyacylglutathione hydrolase-like protein that is encoded in the genome of chicken." [OMA:Q5ZLY2, PRO:DNx] comment: Category=organism-gene. synonym: "chick-HAGHL" EXACT PRO-short-label [PRO:DNx] synonym: "HAGHL" RELATED Gene-based [UniProtKB:Q5ZLY2] @@ -220286,7 +221143,7 @@ name: Na(+)/H(+) exchange regulatory cofactor NHE-RF1 (chicken) namespace: protein def: "A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 that is encoded in the genome of chicken." [PRO:CNA] comment: Category=organism-gene. -synonym: "chick-SLC9A3R1" EXACT PRO-short-label [PRO:DNx] +synonym: "chick-NHERF1" EXACT PRO-short-label [PRO:DNx] synonym: "EBP50 (chicken)" EXACT [UniProtKB:Q5ZM14] synonym: "ezrin-radixin-moesin-binding phosphoprotein 50 (chicken)" EXACT [UniProtKB:Q5ZM14] synonym: "NHERF" RELATED Gene-based [UniProtKB:Q5ZM14] @@ -220302,14 +221159,14 @@ is_a: PR:000001041 ! Na(+)/H(+) exchange regulatory cofactor NHE-RF1 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000001041 ! Na(+)/H(+) exchange regulatory cofactor NHE-RF1 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/422108 ! SLC9A3R1 (chicken) +relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/422108 ! NHERF1 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] id: PR:Q5ZM16 name: pre-mRNA-splicing factor RBM22 (chicken) namespace: protein -def: "A pre-mRNA-splicing factor RBM22 that is encoded in the genome of chicken." [OMA:Q5ZM16, PANTHER:PTHR14089\:SF4, PRO:DNx] +def: "A pre-mRNA-splicing factor RBM22 that is encoded in the genome of chicken." [OMA:Q5ZM16, PRO:DNx] comment: Category=organism-gene. synonym: "chick-RBM22" EXACT PRO-short-label [PRO:DNx] synonym: "RBM22" RELATED Gene-based [UniProtKB:Q5ZM16] @@ -220327,7 +221184,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZM30 name: regulation of nuclear pre-mRNA domain-containing protein 1A (chicken) namespace: protein -def: "A regulation of nuclear pre-mRNA domain-containing protein 1A that is encoded in the genome of chicken." [OMA:Q5ZM30, PANTHER:PTHR12460\:SF0, PRO:DNx] +def: "A regulation of nuclear pre-mRNA domain-containing protein 1A that is encoded in the genome of chicken." [OMA:Q5ZM30, PRO:DNx] comment: Category=organism-gene. synonym: "chick-RPRD1A" EXACT PRO-short-label [PRO:DNx] synonym: "cyclin-dependent kinase inhibitor 2B-related protein (chicken)" EXACT [UniProtKB:Q5ZM30] @@ -220364,7 +221221,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZM39 name: B-cell lymphoma 6 protein homolog (chicken) namespace: protein -def: "A B-cell lymphoma 6 protein that is encoded in the genome of chicken." [PANTHER:PTHR23228\:SF26, PRO:DNx] +def: "A B-cell lymphoma 6 protein that is encoded in the genome of chicken." [OMA:Q5ZM39, PRO:DNx] comment: Category=organism-gene. synonym: "BCL6" RELATED Gene-based [UniProtKB:Q5ZM39] synonym: "chick-BCL6" EXACT PRO-short-label [PRO:DNx] @@ -220403,7 +221260,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZM60 name: cell cycle progression protein 1 (chicken) namespace: protein -def: "A cell cycle progression protein 1 that is encoded in the genome of chicken." [PANTHER:PTHR15199\:SF0, PRO:DNx] +def: "A cell cycle progression protein 1 that is encoded in the genome of chicken." [OMA:Q5ZM60, PRO:DNx] comment: Category=organism-gene. synonym: "CCPG1" RELATED Gene-based [UniProtKB:Q5ZM60] synonym: "chick-CCPG1" EXACT PRO-short-label [PRO:DNx] @@ -220420,7 +221277,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZM73 name: mitochondrial Rho GTPase 1 (chicken) namespace: protein -def: "A mitochondrial Rho GTPase 1 that is encoded in the genome of chicken." [PANTHER:PTHR24072\:SF14, PRO:DNx] +def: "A mitochondrial Rho GTPase 1 that is encoded in the genome of chicken." [OMA:Q5ZM73, PRO:DNx] comment: Category=organism-gene. synonym: "chick-RHOT1" EXACT PRO-short-label [PRO:DNx] synonym: "MIRO-1 (chicken)" EXACT [UniProtKB:Q5ZM73] @@ -220439,7 +221296,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZM74 name: RING finger protein 141 (chicken) namespace: protein -def: "A RING finger protein 141 that is encoded in the genome of chicken." [OMA:Q5ZM74, PANTHER:PTHR12109\:SF2, PRO:DNx] +def: "A RING finger protein 141 that is encoded in the genome of chicken." [OMA:Q5ZM74, PRO:DNx] comment: Category=organism-gene. synonym: "chick-RNF141" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_2p1" RELATED Gene-based [UniProtKB:Q5ZM74] @@ -220456,7 +221313,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZM91 name: cAMP-dependent protein kinase type I-alpha regulatory subunit (chicken) namespace: protein -def: "A cAMP-dependent protein kinase type I-alpha regulatory subunit that is encoded in the genome of chicken." [OMA:Q5ZM91, PANTHER:PTHR11635\:SF17, PRO:DNx] +def: "A cAMP-dependent protein kinase type I-alpha regulatory subunit that is encoded in the genome of chicken." [OMA:Q5ZM91, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PRKAR1A" EXACT PRO-short-label [PRO:DNx] synonym: "PRKAR1A" RELATED Gene-based [UniProtKB:Q5ZM91] @@ -220473,7 +221330,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZM96 name: queuine tRNA-ribosyltransferase accessory subunit 2 (chicken) namespace: protein -def: "A queuine tRNA-ribosyltransferase accessory subunit 2 that is encoded in the genome of chicken." [PRO:DNx] +def: "A queuine tRNA-ribosyltransferase accessory subunit 2 that is encoded in the genome of chicken." [OMA:Q5ZM96, PRO:DNx] comment: Category=organism-gene. synonym: "chick-QTRT2" EXACT PRO-short-label [PRO:DNx] synonym: "QTRT2" RELATED Gene-based [UniProtKB:Q5ZM96] @@ -220512,7 +221369,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZMA2 name: pre-mRNA-processing factor 19 (chicken) namespace: protein -def: "A pre-mRNA-processing factor 19 that is encoded in the genome of chicken." [OMA:Q5ZMA2, PANTHER:PTHR13889\:SF8, PRO:DNx] +def: "A pre-mRNA-processing factor 19 that is encoded in the genome of chicken." [OMA:Q5ZMA2, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PRPF19" EXACT PRO-short-label [PRO:DNx] synonym: "PRP19/PSO4 homolog (chicken)" EXACT [UniProtKB:Q5ZMA2] @@ -220531,7 +221388,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZMA3 name: RNA-binding protein 24 (chicken) namespace: protein -def: "An RNA-binding protein 24 that is encoded in the genome of chicken." [PANTHER:PTHR24011\:SF25, PRO:DNx] +def: "An RNA-binding protein 24 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-RBM24" EXACT PRO-short-label [PRO:DNx] synonym: "RBM24" RELATED Gene-based [UniProtKB:Q5ZMA3] @@ -220549,7 +221406,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZMB2 name: heme-binding protein 1 (chicken) namespace: protein -def: "A heme-binding protein 1 that is encoded in the genome of chicken." [PANTHER:PTHR11220\:SF2, PRO:DNx] +def: "A heme-binding protein 1 that is encoded in the genome of chicken." [OMA:Q5ZMB2, PRO:DNx] comment: Category=organism-gene. synonym: "chick-HEBP1" EXACT PRO-short-label [PRO:DNx] synonym: "HEBP1" RELATED Gene-based [UniProtKB:Q5ZMB2] @@ -220566,7 +221423,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZMC0 name: endothelial differentiation-related factor 1 homolog (chicken) namespace: protein -def: "An endothelial differentiation-related factor 1 that is encoded in the genome of chicken." [OMA:Q5ZMC0, PANTHER:PTHR10245\:SF1, PRO:DNx] +def: "An endothelial differentiation-related factor 1 that is encoded in the genome of chicken." [OMA:Q5ZMC0, PRO:DNx] comment: Category=organism-gene. synonym: "chick-EDF1" EXACT PRO-short-label [PRO:DNx] synonym: "EDF-1 (chicken)" EXACT [UniProtKB:Q5ZMC0] @@ -220600,7 +221457,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZMC6 name: GSK3-beta interaction protein (chicken) namespace: protein -def: "A GSK3B-interacting protein that is encoded in the genome of chicken." [OMA:Q5ZMC6, PANTHER:PTHR12490\:SF0, PRO:DNx] +def: "A GSK3B-interacting protein that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-GSKIP" EXACT PRO-short-label [PRO:DNx] synonym: "GSKIP" RELATED Gene-based [UniProtKB:Q5ZMC6] @@ -220617,7 +221474,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZMC9 name: nuclear distribution protein nudE homolog 1 (chicken) namespace: protein -def: "A nuclear distribution protein nudE homolog 1 that is encoded in the genome of chicken." [OMA:Q5ZMC9, PANTHER:PTHR10921\:SF1, PRO:DNx] +def: "A nuclear distribution protein nudE homolog 1 that is encoded in the genome of chicken." [OMA:Q5ZMC9, PRO:DNx] comment: Category=organism-gene. synonym: "chick-NDE1" EXACT PRO-short-label [PRO:DNx] synonym: "NDE1" RELATED Gene-based [UniProtKB:Q5ZMC9] @@ -220668,7 +221525,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZMF3 name: deoxycytidine kinase (chicken) namespace: protein -def: "A deoxycytidine kinase that is encoded in the genome of chicken." [PANTHER:PTHR10513\:SF7, PRO:DNx] +def: "A deoxycytidine kinase that is encoded in the genome of chicken." [OMA:Q5ZMF3, PRO:DNx] comment: Category=organism-gene. synonym: "chick-DCK" EXACT PRO-short-label [PRO:DNx] synonym: "DCK" RELATED Gene-based [UniProtKB:Q5ZMF3] @@ -220706,7 +221563,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZMI4 name: major vault protein (chicken) namespace: protein -def: "A major vault protein that is encoded in the genome of chicken." [PANTHER:PTHR14165\:SF3, PRO:DNx] +def: "A major vault protein that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-MVP" EXACT PRO-short-label [PRO:DNx] synonym: "MVP" RELATED Gene-based [UniProtKB:Q5ZMI4] @@ -220723,7 +221580,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZMK5 name: bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 (chicken) namespace: protein -def: "A bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 that is encoded in the genome of chicken." [PANTHER:PTHR12480\:SF5, PRO:DNx] +def: "A bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 that is encoded in the genome of chicken." [OMA:Q5ZMK5, PRO:DNx] comment: Category=organism-gene. synonym: "chick-JMJD6" EXACT PRO-short-label [PRO:DNx] synonym: "histone arginine demethylase JMJD6 (chicken)" EXACT [UniProtKB:Q5ZMK5] @@ -220748,7 +221605,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZML1 name: importin subunit alpha-5 (chicken) namespace: protein -def: "An importin subunit alpha-5 that is encoded in the genome of chicken." [PRO:DNx] +def: "An importin subunit alpha-5 that is encoded in the genome of chicken." [OMA:Q5ZML1, PRO:DNx] comment: Category=organism-gene. synonym: "chick-KPNA1" EXACT PRO-short-label [PRO:DNx] synonym: "karyopherin subunit alpha-1 (chicken)" EXACT [UniProtKB:Q5ZML1] @@ -220802,7 +221659,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZMN3 name: prohibitin-2 (chicken) namespace: protein -def: "A prohibitin-2 that is encoded in the genome of chicken." [PANTHER:PTHR23222\:SF0, PRO:DNx] +def: "A prohibitin-2 that is encoded in the genome of chicken." [OMA:Q5ZMN3, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PHB2" EXACT PRO-short-label [PRO:DNx] synonym: "PHB2" RELATED Gene-based [UniProtKB:Q5ZMN3] @@ -220921,7 +221778,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZMV3 name: protein Dr1 (chicken) namespace: protein -def: "A protein Dr1 that is encoded in the genome of chicken." [OMA:Q5ZMV3, PANTHER:PTHR11064\:SF8, PRO:DNx] +def: "A protein Dr1 that is encoded in the genome of chicken." [OMA:Q5ZMV3, PRO:DNx] comment: Category=organism-gene. synonym: "chick-DR1" EXACT PRO-short-label [PRO:DNx] synonym: "Down-regulator of transcription 1 (chicken)" EXACT [UniProtKB:Q5ZMV3] @@ -220942,7 +221799,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q5ZMW5 name: Rho GTPase-activating protein 26 (chicken) namespace: protein -def: "A Rho GTPase-activating protein 26 that is encoded in the genome of chicken." [OMA:Q5ZMW5, PANTHER:PTHR12552\:SF1, PRO:DNx] +def: "A Rho GTPase-activating protein 26 that is encoded in the genome of chicken." [OMA:Q5ZMW5, PRO:DNx] comment: Category=organism-gene. synonym: "ARHGAP26" RELATED Gene-based [UniProtKB:Q5ZMW5] synonym: "chick-ARHGAP26" EXACT PRO-short-label [PRO:DNx] @@ -221206,7 +222063,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q60648 name: ganglioside GM2 activator (mouse) namespace: protein -def: "A ganglioside GM2 activator that is encoded in the genome of mouse." [OMA:Q60648, PANTHER:PTHR17357\:SF0, PRO:DNx] +def: "A ganglioside GM2 activator that is encoded in the genome of mouse." [OMA:Q60648, PRO:DNx] comment: Category=organism-gene. synonym: "cerebroside sulfate activator protein (mouse)" EXACT [UniProtKB:Q60648] synonym: "GM2-AP (mouse)" EXACT [UniProtKB:Q60648] @@ -223154,7 +224011,7 @@ is_a: PR:000005423 ! chitinase-3-like protein 1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000005423 ! chitinase-3-like protein 1 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1340899 ! Chil1 (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1340899 ! Chi3l1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -223568,6 +224425,7 @@ def: "An RNA-binding protein FXR1 that is encoded in the genome of mouse." [OMA: comment: Category=organism-gene. synonym: "Fxr1" RELATED Gene-based [UniProtKB:Q61584] synonym: "Fxr1h" RELATED Gene-based [UniProtKB:Q61584] +synonym: "FXR1P (mouse)" EXACT [UniProtKB:Q61584] synonym: "mFXR1" EXACT PRO-short-label [PRO:DNx] synonym: "mFxr1p" EXACT [UniProtKB:Q61584] xref: UniProtKB:Q61584 @@ -224181,7 +225039,7 @@ def: "A meiosis expressed gene 1 protein that is encoded in the genome of mouse. comment: Category=organism-gene. synonym: "Meg1" RELATED Gene-based [UniProtKB:Q61845] synonym: "Meig1" RELATED Gene-based [UniProtKB:Q61845] -synonym: "MLZ-278 (mouse)" EXACT [UniProtKB:Q61845] +synonym: "MLZ-278" RELATED Gene-based [UniProtKB:Q61845] synonym: "mMEIG1" EXACT PRO-short-label [PRO:DNx] synonym: "protein expressed in male leptotene and zygotene spermatocytes 278 (mouse)" EXACT [UniProtKB:Q61845] xref: UniProtKB:Q61845 @@ -224632,6 +225490,7 @@ def: "A retinal dehydrogenase 2 that is encoded in the genome of mouse." [OMA:Q6 comment: Category=organism-gene. synonym: "aldehyde dehydrogenase family 1 member A2 (mouse)" EXACT [UniProtKB:Q62148] synonym: "Aldh1a2" RELATED Gene-based [UniProtKB:Q62148] +synonym: "ALDH1A2 (mouse)" EXACT [UniProtKB:Q62148] synonym: "Aldh1a7" RELATED Gene-based [UniProtKB:Q62148] synonym: "mALDH1A2" EXACT PRO-short-label [PRO:DNx] synonym: "RALDH 2 (mouse)" EXACT [UniProtKB:Q62148] @@ -224674,7 +225533,6 @@ comment: Category=organism-gene. synonym: "mTRIM27" EXACT PRO-short-label [PRO:DNx] synonym: "ret finger protein (mouse)" EXACT [UniProtKB:Q62158] synonym: "Rfp" RELATED Gene-based [UniProtKB:Q62158] -synonym: "RING-type E3 ubiquitin transferase TRIM27 (mouse)" EXACT [UniProtKB:Q62158] synonym: "Trim27" RELATED Gene-based [UniProtKB:Q62158] synonym: "tripartite motif-containing protein 27 (mouse)" EXACT [UniProtKB:Q62158] xref: UniProtKB:Q62158 @@ -224853,7 +225711,6 @@ comment: Category=organism-gene. synonym: "52 kDa ribonucleoprotein autoantigen Ro/SS-A (mouse)" EXACT [UniProtKB:Q62191] synonym: "52 kDa Ro protein (mouse)" EXACT [UniProtKB:Q62191] synonym: "mTRIM21" EXACT PRO-short-label [PRO:DNx] -synonym: "RING-type E3 ubiquitin transferase TRIM21 (mouse)" EXACT [UniProtKB:Q62191] synonym: "Ro(SS-A) (mouse)" EXACT [UniProtKB:Q62191] synonym: "Ro52" RELATED Gene-based [UniProtKB:Q62191] synonym: "Sjoegren syndrome type A antigen (mouse)" EXACT [UniProtKB:Q62191] @@ -225820,17 +226677,19 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q640R3 -name: hepatocyte cell adhesion molecule (mouse) +name: hepatic and glial cell adhesion molecule (mouse) namespace: protein -def: "A hepatocyte cell adhesion molecule that is encoded in the genome of mouse." [OMA:Q640R3, PRO:DNx] +def: "A hepatic and glial cell adhesion molecule that is encoded in the genome of mouse." [OMA:Q640R3, PRO:DNx] comment: Category=organism-gene. +synonym: "glialCAM (mouse)" EXACT [UniProtKB:Q640R3] synonym: "Hepacam" RELATED Gene-based [UniProtKB:Q640R3] +synonym: "hepatocyte cell adhesion molecule (mouse)" EXACT [UniProtKB:Q640R3] synonym: "mHEPACAM" EXACT PRO-short-label [PRO:DNx] synonym: "protein hepaCAM (mouse)" EXACT [UniProtKB:Q640R3] xref: UniProtKB:Q640R3 -is_a: PR:000008510 ! hepatocyte cell adhesion molecule +is_a: PR:000008510 ! hepatic and glial cell adhesion molecule is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000008510 ! hepatocyte cell adhesion molecule +intersection_of: PR:000008510 ! hepatic and glial cell adhesion molecule intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1920177 ! Hepacam (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -227000,7 +227859,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q66PG3 name: xylosyl- and glucuronyltransferase LARGE1 (chicken) namespace: protein -def: "A xylosyl- and glucuronyltransferase LARGE1 that is encoded in the genome of chicken." [PANTHER:PTHR12270\:SF6, PRO:DNx] +def: "A xylosyl- and glucuronyltransferase LARGE1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "acetylglucosaminyltransferase-like 1A (chicken)" EXACT [UniProtKB:Q66PG3] synonym: "chick-LARGE1" EXACT PRO-short-label [PRO:DNx] @@ -227398,7 +228257,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q69ZK5 name: kelch-like protein 14 (mouse) namespace: protein -def: "A kelch-like protein 14 that is encoded in the genome of mouse." [OMA:Q69ZK5, PANTHER:PTHR24412\:SF111, PRO:DNx] +def: "A kelch-like protein 14 that is encoded in the genome of mouse." [OMA:Q69ZK5, PRO:DNx] comment: Category=organism-gene. synonym: "Kiaa1384" RELATED Gene-based [UniProtKB:Q69ZK5] synonym: "Klhl14" RELATED Gene-based [UniProtKB:Q69ZK5] @@ -227472,7 +228331,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q6A2H4 name: interleukin-10 (chicken) namespace: protein -def: "An interleukin-10 that is encoded in the genome of chicken." [OMA:Q6A2H4, PANTHER:PTHR11585\:SF1, PRO:DNx] +def: "An interleukin-10 that is encoded in the genome of chicken." [OMA:Q6A2H4, PRO:DNx] comment: Category=organism-gene. synonym: "chick-IL10" EXACT PRO-short-label [PRO:DNx] synonym: "IL-10 (chicken)" EXACT [UniProtKB:Q6A2H4] @@ -228236,7 +229095,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q6IE32 name: serine protease inhibitor Kazal-type 7 (mouse) namespace: protein -def: "A serine protease inhibitor Kazal-type 7 that is encoded in the genome of mouse." [OMA:Q6IE32, PANTHER:PTHR21312\:SF7, PRO:DNx] +def: "A serine protease inhibitor Kazal-type 7 that is encoded in the genome of mouse." [OMA:Q6IE32, PRO:DNx] comment: Category=organism-gene. synonym: "Ecg2" RELATED Gene-based [UniProtKB:Q6IE32] synonym: "ECRG-2 (mouse)" EXACT [UniProtKB:Q6IE32] @@ -228440,7 +229299,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q6IVA4 name: ubiquitin-like modifier-activating enzyme 5 (chicken) namespace: protein -def: "A ubiquitin-like modifier-activating enzyme 5 that is encoded in the genome of chicken." [PANTHER:PTHR10953\:SF9, PRO:DNx] +def: "A ubiquitin-like modifier-activating enzyme 5 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-UBA5" EXACT PRO-short-label [PRO:DNx] synonym: "UBA5" RELATED Gene-based [UniProtKB:Q6IVA4] @@ -228478,7 +229337,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q6JHU8 name: prolyl 3-hydroxylase 1 (chicken) namespace: protein -def: "A prolyl 3-hydroxylase 1 that is encoded in the genome of chicken." [OMA:Q6JHU8, PANTHER:PTHR14049\:SF5, PRO:DNx] +def: "A prolyl 3-hydroxylase 1 that is encoded in the genome of chicken." [OMA:Q6JHU8, PRO:DNx] comment: Category=organism-gene. synonym: "chick-P3H1" EXACT PRO-short-label [PRO:DNx] synonym: "LEPRE1" RELATED Gene-based [UniProtKB:Q6JHU8] @@ -228808,7 +229667,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q6NVF0 name: inositol polyphosphate 5-phosphatase OCRL (mouse) namespace: protein -def: "An inositol polyphosphate 5-phosphatase OCRL that is encoded in the genome of mouse." [OMA:Q6NVF0, PANTHER:PTHR11200\:SF25, PRO:DNx] +def: "An inositol polyphosphate 5-phosphatase OCRL that is encoded in the genome of mouse." [OMA:Q6NVF0, PRO:DNx] comment: Category=organism-gene. synonym: "inositol polyphosphate 5-phosphatase OCRL-1 (mouse)" EXACT [UniProtKB:Q6NVF0] synonym: "mOCRL" EXACT PRO-short-label [PRO:DNx] @@ -229028,6 +229887,7 @@ synonym: "hCAVIN1" EXACT PRO-short-label [PRO:DNx] synonym: "polymerase I and transcript release factor (human)" EXACT [] synonym: "PTRF" RELATED Gene-based [UniProtKB:Q6NZI2] xref: Reactome:R-HSA-74981 "PR:Q6NZI2 located_in GO:0005654" +xref: Reactome:R-HSA-9714278 "PR:Q6NZI2 located_in GO:0005886" xref: UniProtKB:Q6NZI2 is_a: PR:000013483 ! caveolae-associated protein 1 is_a: PR:000029067 ! Homo sapiens protein @@ -229195,24 +230055,24 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q6P1L8 -name: 39S ribosomal protein L14, mitochondrial (human) +name: large ribosomal subunit protein uL14m (human) namespace: protein -def: "A 39S ribosomal protein L14, mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q6P1L8] +def: "A large ribosomal subunit protein uL14m that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q6P1L8] comment: Category=organism-gene. +synonym: "39S ribosomal protein L14, mitochondrial (human)" EXACT [UniProtKB:Q6P1L8] synonym: "39S ribosomal protein L32, mitochondrial (human)" RELATED [UniProtKB:Q6P1L8] synonym: "hMRPL14" EXACT PRO-short-label [PRO:DNx] synonym: "L14mt (human)" EXACT [UniProtKB:Q6P1L8] synonym: "L32mt (human)" BROAD [UniProtKB:Q6P1L8] -synonym: "mitochondrial large ribosomal subunit protein uL14m (human)" EXACT [UniProtKB:Q6P1L8] synonym: "MRP-L14 (human)" EXACT [UniProtKB:Q6P1L8] synonym: "MRP-L32 (human)" BROAD [UniProtKB:Q6P1L8] synonym: "MRPL14" RELATED Gene-based [UniProtKB:Q6P1L8] synonym: "MRPL32" RELATED Gene-based [UniProtKB:Q6P1L8] synonym: "RPML32" RELATED Gene-based [UniProtKB:Q6P1L8] xref: UniProtKB:Q6P1L8 -is_a: PR:000010576 ! 39S ribosomal protein L14, mitochondrial +is_a: PR:000010576 ! large ribosomal subunit protein uL14m is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000010576 ! 39S ribosomal protein L14, mitochondrial +intersection_of: PR:000010576 ! large ribosomal subunit protein uL14m intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -230099,9 +230959,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q6PB30 -name: putative chondrosarcoma-associated gene 1 protein (human) +name: chondrosarcoma-associated gene 1 protein (human) namespace: protein -def: "A putative chondrosarcoma-associated gene 1 protein that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q6PB30] +def: "A chondrosarcoma-associated gene 1 protein that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q6PB30] comment: Category=organism-gene. synonym: "cancer/testis antigen 24.1 (human)" EXACT [UniProtKB:Q6PB30] synonym: "cancer/testis antigen CSAGE (human)" EXACT [UniProtKB:Q6PB30] @@ -230111,8 +230971,8 @@ synonym: "CT24.1 (human)" EXACT [UniProtKB:Q6PB30] synonym: "hCSAG1" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:Q6PB30 is_a: PR:000029067 ! Homo sapiens protein -is_a: PR:000030546 ! putative chondrosarcoma-associated gene 1 protein -intersection_of: PR:000030546 ! putative chondrosarcoma-associated gene 1 protein +is_a: PR:000030546 ! chondrosarcoma-associated gene 1 protein +intersection_of: PR:000030546 ! chondrosarcoma-associated gene 1 protein intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -230506,7 +231366,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q6PFX9 name: poly [ADP-ribose] polymerase tankyrase-1 (mouse) namespace: protein -def: "A poly [ADP-ribose] polymerase tankyrase-1 that is encoded in the genome of mouse." [OMA:Q6PFX9, PANTHER:PTHR24180\:SF307, PRO:DNx] +def: "A poly [ADP-ribose] polymerase tankyrase-1 that is encoded in the genome of mouse." [OMA:Q6PFX9, PRO:DNx] comment: Category=organism-gene. synonym: "ADP-ribosyltransferase diphtheria toxin-like 5 (mouse)" EXACT [UniProtKB:Q6PFX9] synonym: "ARTD5 (mouse)" EXACT [UniProtKB:Q6PFX9] @@ -230856,7 +231716,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q6PVW7 name: zona pellucida-binding protein 2 (chicken) namespace: protein -def: "A zona pellucida-binding protein 2 that is encoded in the genome of chicken." [PANTHER:PTHR15443\:SF4, PRO:DNx] +def: "A zona pellucida-binding protein 2 that is encoded in the genome of chicken." [OMA:Q6PVW7, PRO:DNx] comment: Category=organism-gene. synonym: "chick-ZPBP2" EXACT PRO-short-label [PRO:DNx] synonym: "ZPBP2" RELATED Gene-based [UniProtKB:Q6PVW7] @@ -230872,7 +231732,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q6PZ02 name: cysteine protease ATG4B (chicken) namespace: protein -def: "A cysteine protease ATG4B that is encoded in the genome of chicken." [OMA:Q6PZ02, PANTHER:PTHR22624\:SF18, PRO:DNx] +def: "A cysteine protease ATG4B that is encoded in the genome of chicken." [OMA:Q6PZ02, PRO:DNx] comment: Category=organism-gene. synonym: "APG4B" RELATED Gene-based [UniProtKB:Q6PZ02] synonym: "ATG4B" RELATED Gene-based [UniProtKB:Q6PZ02] @@ -231355,7 +232215,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q6U1I9 name: serine/threonine-protein kinase Sgk1 (chicken) namespace: protein -def: "A serine/threonine-protein kinase Sgk1 that is encoded in the genome of chicken." [OMA:Q6U1I9, PANTHER:PTHR24356\:SF106, PRO:DNx] +def: "A serine/threonine-protein kinase Sgk1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-SGK1" EXACT PRO-short-label [PRO:DNx] synonym: "serum/glucocorticoid-regulated kinase 1 (chicken)" EXACT [UniProtKB:Q6U1I9] @@ -231467,31 +232327,6 @@ intersection_of: PR:000014770 ! surfactant-associated protein 2 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens -[Term] -id: PR:Q6UW15 -name: regenerating islet-derived protein 3-gamma (human) -namespace: protein -def: "A regenerating islet-derived protein 3-gamma that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q6UW15] -comment: Category=organism-gene. -synonym: "hREG3G" EXACT PRO-short-label [PRO:DNx] -synonym: "pancreatitis-associated protein 1B (human)" EXACT [UniProtKB:Q6UW15] -synonym: "pancreatitis-associated protein IB (human)" EXACT [UniProtKB:Q6UW15] -synonym: "PAP IB (human)" EXACT [UniProtKB:Q6UW15] -synonym: "PAP-1B (human)" EXACT [UniProtKB:Q6UW15] -synonym: "PAP1B" RELATED Gene-based [UniProtKB:Q6UW15] -synonym: "REG III (human)" EXACT [UniProtKB:Q6UW15] -synonym: "Reg III-gamma (human)" EXACT [UniProtKB:Q6UW15] -synonym: "REG-3-gamma (human)" EXACT [UniProtKB:Q6UW15] -synonym: "REG3G" RELATED Gene-based [UniProtKB:Q6UW15] -synonym: "regenerating islet-derived protein III-gamma (human)" EXACT [UniProtKB:Q6UW15] -synonym: "UNQ429/PRO162" RELATED Gene-based [UniProtKB:Q6UW15] -xref: UniProtKB:Q6UW15 -is_a: PR:000013872 ! regenerating islet-derived protein 3-gamma -is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000013872 ! regenerating islet-derived protein 3-gamma -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens - [Term] id: PR:Q6UWB1 name: interleukin-27 receptor subunit alpha (human) @@ -232270,7 +233105,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q6VYA3 name: sclerostin domain-containing protein 1 (chicken) namespace: protein -def: "A sclerostin domain-containing protein 1 that is encoded in the genome of chicken." [OMA:Q6VYA3, PANTHER:PTHR14903\:SF1, PRO:DNx] +def: "A sclerostin domain-containing protein 1 that is encoded in the genome of chicken." [OMA:Q6VYA3, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SOSTDC1" EXACT PRO-short-label [PRO:DNx] synonym: "SOSTDC1" RELATED Gene-based [UniProtKB:Q6VYA3] @@ -233219,6 +234054,7 @@ comment: Category=organism-gene. synonym: "eIF-2-alpha (mouse)" EXACT [UniProtKB:Q6ZWX6] synonym: "eIF-2A (mouse)" RELATED [UniProtKB:Q6ZWX6] synonym: "eIF-2alpha (mouse)" EXACT [UniProtKB:Q6ZWX6] +synonym: "eIF2-alpha (mouse)" EXACT [UniProtKB:Q6ZWX6] synonym: "Eif2a" RELATED Gene-based [UniProtKB:Q6ZWX6] synonym: "Eif2s1" RELATED Gene-based [UniProtKB:Q6ZWX6] synonym: "eukaryotic translation initiation factor 2 subunit alpha (mouse)" EXACT [UniProtKB:Q6ZWX6] @@ -233257,7 +234093,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q6ZXC3 name: pro-thyrotropin-releasing hormone (chicken) namespace: protein -def: "A pro-thyrotropin-releasing hormone that is encoded in the genome of chicken." [OMA:Q6ZXC3, PANTHER:PTHR17530\:SF0, PRO:DNx] +def: "A pro-thyrotropin-releasing hormone that is encoded in the genome of chicken." [OMA:Q6ZXC3, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TRH" EXACT PRO-short-label [PRO:DNx] synonym: "pro-TRH (chicken)" EXACT [UniProtKB:Q6ZXC3] @@ -233513,7 +234349,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q71SY6 name: out at first protein homolog (chicken) namespace: protein -def: "An out at first protein that is encoded in the genome of chicken." [OMA:Q71SY6, PANTHER:PTHR13423\:SF0, PRO:DNx] +def: "An out at first protein that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-OAF" EXACT PRO-short-label [PRO:DNx] synonym: "oaf" RELATED Gene-based [UniProtKB:Q71SY6] @@ -233530,7 +234366,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q75QI0 name: craniofacial development protein 1 (chicken) namespace: protein -def: "A craniofacial development protein 1 that is encoded in the genome of chicken." [PANTHER:PTHR23227\:SF14, PRO:DNx] +def: "A craniofacial development protein 1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "BCNT" RELATED Gene-based [UniProtKB:Q75QI0] synonym: "bucentaur (chicken)" EXACT [UniProtKB:Q75QI0] @@ -233651,7 +234487,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q76I89 name: kinetochore protein NDC80 homolog (chicken) namespace: protein -def: "A kinetochore protein NDC80 that is encoded in the genome of chicken." [OMA:Q76I89, PANTHER:PTHR10643\:SF0, PRO:DNx] +def: "A kinetochore protein NDC80 that is encoded in the genome of chicken." [OMA:Q76I89, PRO:DNx] comment: Category=organism-gene. synonym: "chick-NDC80" EXACT PRO-short-label [PRO:DNx] synonym: "HEC1" RELATED Gene-based [UniProtKB:Q76I89] @@ -233694,7 +234530,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q76KB1 name: heparan sulfate 2-O-sulfotransferase 1 (chicken) namespace: protein -def: "A heparan sulfate 2-O-sulfotransferase 1 that is encoded in the genome of chicken." [OMA:Q76KB1, PANTHER:PTHR12129\:SF3, PRO:DNx] +def: "A heparan sulfate 2-O-sulfotransferase 1 that is encoded in the genome of chicken." [OMA:Q76KB1, PRO:DNx] comment: Category=organism-gene. synonym: "chick-HS2ST1" EXACT PRO-short-label [PRO:DNx] synonym: "cHS2ST (chicken)" EXACT [UniProtKB:Q76KB1] @@ -234483,7 +235319,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q7SZC6 name: regulator of G-protein signaling 4 (chicken) namespace: protein -def: "A regulator of G-protein signaling 4 that is encoded in the genome of chicken." [OMA:Q7SZC6, PANTHER:PTHR10845\:SF40, PRO:DNx] +def: "A regulator of G-protein signaling 4 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-RGS4" EXACT PRO-short-label [PRO:DNx] synonym: "RGS4" RELATED Gene-based [UniProtKB:Q7SZC6] @@ -234499,7 +235335,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q7T199 name: potassium voltage-gated channel subfamily A member 10 (chicken) namespace: protein -def: "A voltage-gated potassium channel subunit KCNA10 that is encoded in the genome of chicken." [PANTHER:PTHR11537\:SF44, PRO:DNx] +def: "A voltage-gated potassium channel subunit KCNA10 that is encoded in the genome of chicken." [PRO:DNx, UniProtKB:Q7T199] comment: Category=organism-gene. synonym: "chick-KCNA10" EXACT PRO-short-label [PRO:DNx] synonym: "KCNA10" RELATED Gene-based [UniProtKB:Q7T199] @@ -234515,7 +235351,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q7T2H2 name: fibroblast growth factor receptor-like 1 (chicken) namespace: protein -def: "A fibroblast growth factor receptor-like 1 that is encoded in the genome of chicken." [OMA:Q7T2H2, PANTHER:PTHR19890\:SF4, PRO:DNx] +def: "A fibroblast growth factor receptor-like 1 that is encoded in the genome of chicken." [OMA:Q7T2H2, PRO:DNx] comment: Category=organism-gene. synonym: "chick-FGFRL1" EXACT PRO-short-label [PRO:DNx] synonym: "FGFRL1" RELATED Gene-based [UniProtKB:Q7T2H2] @@ -235207,7 +236043,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q7TS55 name: tumor necrosis factor ligand superfamily member 18 (mouse) namespace: protein -def: "A tumor necrosis factor ligand superfamily member 18 that is encoded in the genome of mouse." [OMA:Q7TS55, PANTHER:PTHR15267\:SF0, PRO:DNx] +def: "A tumor necrosis factor ligand superfamily member 18 that is encoded in the genome of mouse." [OMA:Q7TS55, PRO:DNx] comment: Category=organism-gene. synonym: "GITR ligand (mouse)" EXACT [UniProtKB:Q7TS55] synonym: "Gitrl" RELATED Gene-based [UniProtKB:Q7TS55] @@ -235317,7 +236153,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q7TSK3 name: protocadherin-8 (mouse) namespace: protein -def: "A protocadherin-8 that is encoded in the genome of mouse." [OMA:Q7TSK3, PANTHER:PTHR24028\:SF90, PRO:DNx] +def: "A protocadherin-8 that is encoded in the genome of mouse." [OMA:Q7TSK3, PRO:DNx] comment: Category=organism-gene. synonym: "arcadlin (mouse)" EXACT [UniProtKB:Q7TSK3] synonym: "mPCDH8" EXACT PRO-short-label [PRO:DNx] @@ -235456,19 +236292,19 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q7Z2W9 -name: 39S ribosomal protein L21, mitochondrial (human) +name: large ribosomal subunit protein bL21m (human) namespace: protein -def: "A 39S ribosomal protein L21, mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q7Z2W9] +def: "A large ribosomal subunit protein bL21m that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q7Z2W9] comment: Category=organism-gene. +synonym: "39S ribosomal protein L21, mitochondrial (human)" EXACT [UniProtKB:Q7Z2W9] synonym: "hMRPL21" EXACT PRO-short-label [PRO:DNx] synonym: "L21mt (human)" EXACT [UniProtKB:Q7Z2W9] -synonym: "mitochondrial large ribosomal subunit protein bL21m (human)" EXACT [UniProtKB:Q7Z2W9] synonym: "MRP-L21 (human)" EXACT [UniProtKB:Q7Z2W9] synonym: "MRPL21" RELATED Gene-based [UniProtKB:Q7Z2W9] xref: UniProtKB:Q7Z2W9 -is_a: PR:000010584 ! 39S ribosomal protein L21, mitochondrial +is_a: PR:000010584 ! large ribosomal subunit protein bL21m is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000010584 ! 39S ribosomal protein L21, mitochondrial +intersection_of: PR:000010584 ! large ribosomal subunit protein bL21m intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -235776,6 +236612,7 @@ synonym: "hGOLGA7" EXACT PRO-short-label [PRO:DNx] synonym: "HSPC041" RELATED Gene-based [UniProtKB:Q7Z5G4] xref: Reactome:R-HSA-6800164 "PR:Q7Z5G4 located_in GO:1904724" xref: Reactome:R-HSA-6800449 "PR:Q7Z5G4 located_in GO:0005576" +xref: Reactome:R-HSA-9647777 "PR:Q7Z5G4 located_in GO:0000139" xref: UniProtKB:Q7Z5G4 is_a: PR:000008135 ! golgin subfamily A member 7 is_a: PR:000029067 ! Homo sapiens protein @@ -236139,21 +236976,21 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q7Z7F7 -name: 39S ribosomal protein L55, mitochondrial (human) +name: large ribosomal subunit protein mL55 (human) namespace: protein -def: "A 39S ribosomal protein L55, mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q7Z7F7] +def: "A large ribosomal subunit protein mL55 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q7Z7F7] comment: Category=organism-gene. +synonym: "39S ribosomal protein L55, mitochondrial (human)" EXACT [UniProtKB:Q7Z7F7] synonym: "hMRPL55" EXACT PRO-short-label [PRO:DNx] synonym: "L55mt (human)" EXACT [UniProtKB:Q7Z7F7] synonym: "mitochondrial large ribosomal subunit protein bL31m (human)" EXACT [UniProtKB:Q7Z7F7] -synonym: "mitochondrial large ribosomal subunit protein mL55 (human)" EXACT [UniProtKB:Q7Z7F7] synonym: "MRP-L55 (human)" EXACT [UniProtKB:Q7Z7F7] synonym: "MRPL55" RELATED Gene-based [UniProtKB:Q7Z7F7] synonym: "UNQ5835/PRO19675" RELATED Gene-based [UniProtKB:Q7Z7F7] xref: UniProtKB:Q7Z7F7 -is_a: PR:000010616 ! 39S ribosomal protein L55, mitochondrial +is_a: PR:000010616 ! large ribosomal subunit protein mL55 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000010616 ! 39S ribosomal protein L55, mitochondrial +intersection_of: PR:000010616 ! large ribosomal subunit protein mL55 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -236213,24 +237050,24 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q7Z7H8 -name: 39S ribosomal protein L10, mitochondrial (human) +name: large ribosomal subunit protein uL10m (human) namespace: protein -def: "A 39S ribosomal protein L10, mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q7Z7H8] +def: "A large ribosomal subunit protein uL10m that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q7Z7H8] comment: Category=organism-gene. +synonym: "39S ribosomal protein L10, mitochondrial (human)" EXACT [UniProtKB:Q7Z7H8] synonym: "39S ribosomal protein L8, mitochondrial (human)" EXACT [UniProtKB:Q7Z7H8] synonym: "hMRPL10" EXACT PRO-short-label [PRO:DNx] synonym: "L10mt (human)" EXACT [UniProtKB:Q7Z7H8] synonym: "L8mt (human)" EXACT [UniProtKB:Q7Z7H8] -synonym: "mitochondrial large ribosomal subunit protein uL10m (human)" EXACT [UniProtKB:Q7Z7H8] synonym: "MRP-L10 (human)" EXACT [UniProtKB:Q7Z7H8] synonym: "MRP-L8 (human)" EXACT [UniProtKB:Q7Z7H8] synonym: "MRPL10" RELATED Gene-based [UniProtKB:Q7Z7H8] synonym: "MRPL8" RELATED Gene-based [UniProtKB:Q7Z7H8] synonym: "RPML8" RELATED Gene-based [UniProtKB:Q7Z7H8] xref: UniProtKB:Q7Z7H8 -is_a: PR:000010572 ! 39S ribosomal protein L10, mitochondrial +is_a: PR:000010572 ! large ribosomal subunit protein uL10m is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000010572 ! 39S ribosomal protein L10, mitochondrial +intersection_of: PR:000010572 ! large ribosomal subunit protein uL10m intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -236279,7 +237116,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q7ZT11 name: ankyrin repeat domain-containing protein 1 (chicken) namespace: protein -def: "An ankyrin repeat domain-containing protein 1 that is encoded in the genome of chicken." [OMA:Q7ZT11, PANTHER:PTHR24126\:SF179, PRO:DNx] +def: "An ankyrin repeat domain-containing protein 1 that is encoded in the genome of chicken." [OMA:Q7ZT11, PRO:DNx] comment: Category=organism-gene. synonym: "ANKRD1" RELATED Gene-based [UniProtKB:Q7ZT11] synonym: "cardiac ankyrin repeat protein (chicken)" EXACT [UniProtKB:Q7ZT11] @@ -236329,7 +237166,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q800L1 name: surfeit locus protein 1 (chicken) namespace: protein -def: "A surfeit locus protein 1 that is encoded in the genome of chicken." [OMA:Q800L1, PANTHER:PTHR23427\:SF2, PRO:DNx] +def: "A surfeit locus protein 1 that is encoded in the genome of chicken." [OMA:Q800L1, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SURF1" EXACT PRO-short-label [PRO:DNx] synonym: "SURF-1" RELATED Gene-based [UniProtKB:Q800L1] @@ -236346,7 +237183,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q804X6 name: coagulation factor IX (chicken) namespace: protein -def: "A coagulation factor IX that is encoded in the genome of chicken." [PANTHER:PTHR24265\:SF65, PRO:DNx] +def: "A coagulation factor IX that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-F9" EXACT PRO-short-label [PRO:DNx] synonym: "christmas factor (chicken)" EXACT [UniProtKB:Q804X6] @@ -236500,6 +237337,10 @@ namespace: protein def: "A DnaJ homolog subfamily C member 16 that is encoded in the genome of mouse." [OMA:Q80TN4, PRO:DNx] comment: Category=organism-gene. synonym: "Dnajc16" RELATED Gene-based [UniProtKB:Q80TN4] +synonym: "endoplasmic reticulum DNA J domain-containing protein 8 (mouse)" EXACT [UniProtKB:Q80TN4] +synonym: "ER-resident protein ERdj8 (mouse)" EXACT [UniProtKB:Q80TN4] +synonym: "Erdj8" RELATED Gene-based [UniProtKB:Q80TN4] +synonym: "ERdj8 (mouse)" EXACT [UniProtKB:Q80TN4] synonym: "Kiaa0962" RELATED Gene-based [UniProtKB:Q80TN4] synonym: "mDNAJC16" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:Q80TN4 @@ -236958,18 +237799,17 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q80VJ3 -name: 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 (mouse) +name: 5-hydroxymethyl-dUMP N-hydrolase (mouse) namespace: protein -def: "A 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 that is encoded in the genome of mouse." [OMA:Q80VJ3, PRO:DAN] +def: "A 5-hydroxymethyl-dUMP N-hydrolase that is encoded in the genome of mouse." [OMA:Q80VJ3, PRO:DAN] comment: Category=organism-gene. -synonym: "c-Myc-responsive protein Rcl (mouse)" EXACT [UniProtKB:Q80VJ3] +synonym: "2'-deoxynucleoside 5'-phosphate N-hydrolase 1 (mouse)" EXACT [UniProtKB:Q80VJ3] synonym: "Dnph1" RELATED Gene-based [UniProtKB:Q80VJ3] synonym: "mDNPH1" EXACT PRO-short-label [PRO:DNx] -synonym: "Rcl" RELATED Gene-based [UniProtKB:Q80VJ3] xref: UniProtKB:Q80VJ3 -is_a: PR:000013836 ! 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 +is_a: PR:000013836 ! 5-hydroxymethyl-dUMP N-hydrolase is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000013836 ! 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 +intersection_of: PR:000013836 ! 5-hydroxymethyl-dUMP N-hydrolase intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:3039376 ! Dnph1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -237190,7 +238030,7 @@ is_a: PR:000029032 ! Mus musculus protein is_a: PR:000032258 ! protein N-terminal glutamine amidohydrolase intersection_of: PR:000032258 ! protein N-terminal glutamine amidohydrolase intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1924023 ! Wdyhv1 (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1924023 ! Ntaq1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -237237,7 +238077,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q80WM9 name: tumor necrosis factor receptor superfamily member 14 (mouse) namespace: protein -def: "A tumor necrosis factor receptor superfamily member 14 that is encoded in the genome of mouse." [OMA:Q80WM9, PANTHER:PTHR23097\:SF27, PRO:DNx] +def: "A tumor necrosis factor receptor superfamily member 14 that is encoded in the genome of mouse." [OMA:Q80WM9, PRO:DNx] comment: Category=organism-gene. synonym: "CD270 (mouse)" EXACT [UniProtKB:Q80WM9] synonym: "herpes virus entry mediator A (mouse)" EXACT [UniProtKB:Q80WM9] @@ -237621,7 +238461,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q80Y72 name: cystatin-like 1 (mouse) namespace: protein -def: "A cystatin-like 1 that is encoded in the genome of mouse." [OMA:Q80Y72, PANTHER:PTHR11413\:SF9, PRO:DNx] +def: "A cystatin-like 1 that is encoded in the genome of mouse." [OMA:Q80Y72, PRO:DNx] comment: Category=organism-gene. synonym: "Cstl1" RELATED Gene-based [UniProtKB:Q80Y72] synonym: "mCSTL1" EXACT PRO-short-label [PRO:DNx] @@ -237778,6 +238618,8 @@ name: sodium-independent sulfate anion transporter (mouse) namespace: protein def: "A sodium-independent sulfate anion transporter that is encoded in the genome of mouse." [OMA:Q80ZD3, PRO:DNx] comment: Category=organism-gene. +synonym: "KBAT (mouse)" EXACT [UniProtKB:Q80ZD3] +synonym: "kidney brain anion transporter (mouse)" EXACT [UniProtKB:Q80ZD3] synonym: "mSLC26A11" EXACT PRO-short-label [PRO:DNx] synonym: "Slc26a11" RELATED Gene-based [UniProtKB:Q80ZD3] synonym: "solute carrier family 26 member 11 (mouse)" EXACT [UniProtKB:Q80ZD3] @@ -238021,7 +238863,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q810P3 name: cyclin-dependent kinase inhibitor 3 (mouse) namespace: protein -def: "A cyclin-dependent kinase inhibitor 3 that is encoded in the genome of mouse." [OMA:Q810P3, PANTHER:PTHR23339\:SF24, PRO:DNx] +def: "A cyclin-dependent kinase inhibitor 3 that is encoded in the genome of mouse." [OMA:Q810P3, PRO:DNx] comment: Category=organism-gene. synonym: "CDK2-associated dual-specificity phosphatase (mouse)" EXACT [UniProtKB:Q810P3] synonym: "Cdkn3" RELATED Gene-based [UniProtKB:Q810P3] @@ -238265,6 +239107,7 @@ def: "A nucleoplasmin-2 that is encoded in the genome of human." [PRO:DNx, UniPr comment: Category=organism-gene. synonym: "hNPM2" EXACT PRO-short-label [PRO:DNx] synonym: "NPM2" RELATED Gene-based [UniProtKB:Q86SE8] +xref: Reactome:R-HSA-9821980 "PR:Q86SE8 located_in GO:0005654" xref: UniProtKB:Q86SE8 is_a: PR:000011371 ! nucleoplasmin-2 is_a: PR:000029067 ! Homo sapiens protein @@ -238468,19 +239311,19 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q86TS9 -name: 39S ribosomal protein L52, mitochondrial (human) +name: large ribosomal subunit protein mL52 (human) namespace: protein -def: "A 39S ribosomal protein L52, mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q86TS9] +def: "A large ribosomal subunit protein mL52 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q86TS9] comment: Category=organism-gene. +synonym: "39S ribosomal protein L52, mitochondrial (human)" EXACT [UniProtKB:Q86TS9] synonym: "hMRPL52" EXACT PRO-short-label [PRO:DNx] synonym: "L52mt (human)" EXACT [UniProtKB:Q86TS9] -synonym: "mitochondrial large ribosomal subunit protein mL52 (human)" EXACT [UniProtKB:Q86TS9] synonym: "MRP-L52 (human)" EXACT [UniProtKB:Q86TS9] synonym: "MRPL52" RELATED Gene-based [UniProtKB:Q86TS9] xref: UniProtKB:Q86TS9 -is_a: PR:000010613 ! 39S ribosomal protein L52, mitochondrial +is_a: PR:000010613 ! large ribosomal subunit protein mL52 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000010613 ! 39S ribosomal protein L52, mitochondrial +intersection_of: PR:000010613 ! large ribosomal subunit protein mL52 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -239684,7 +240527,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q8AWC3 name: activity-regulated cytoskeleton-associated protein (chicken) namespace: protein -def: "An activity-regulated cytoskeleton-associated protein that is encoded in the genome of chicken." [OMA:Q8AWC3, PANTHER:PTHR15962\:SF0, PRO:DNx] +def: "An activity-regulated cytoskeleton-associated protein that is encoded in the genome of chicken." [OMA:Q8AWC3, PRO:DNx] comment: Category=organism-gene. synonym: "activity-regulated gene 3.1 protein homolog (chicken)" EXACT [UniProtKB:Q8AWC3] synonym: "ARC" RELATED Gene-based [UniProtKB:Q8AWC3] @@ -239703,7 +240546,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q8AWC7 name: alpha-(1,3)-fucosyltransferase 11 (chicken) namespace: protein -def: "An alpha-(1,3)-fucosyltransferase 11 that is encoded in the genome of chicken." [PANTHER:PTHR11929\:SF3, PRO:DNx] +def: "An alpha-(1,3)-fucosyltransferase 11 that is encoded in the genome of chicken." [OMA:Q8AWC7, PRO:DNx] comment: Category=organism-gene. synonym: "chick-FUT11" EXACT PRO-short-label [PRO:DNx] synonym: "Fuc-TXI (chicken)" EXACT [UniProtKB:Q8AWC7] @@ -239724,7 +240567,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q8AXL1 name: diamine acetyltransferase 1 (chicken) namespace: protein -def: "A diamine acetyltransferase 1 that is encoded in the genome of chicken." [OMA:Q8AXL1, PANTHER:PTHR10545\:SF5, PRO:DNx] +def: "A diamine acetyltransferase 1 that is encoded in the genome of chicken." [OMA:Q8AXL1, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SAT1" EXACT PRO-short-label [PRO:DNx] synonym: "polyamine N-acetyltransferase 1 (chicken)" EXACT [UniProtKB:Q8AXL1] @@ -239746,7 +240589,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q8AXU9 name: endophilin-A3 (chicken) namespace: protein -def: "An endophilin-A3 that is encoded in the genome of chicken." [OMA:Q8AXU9, PANTHER:PTHR10661\:SF27, PRO:DNx] +def: "An endophilin-A3 that is encoded in the genome of chicken." [OMA:Q8AXU9, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SH3GL3" EXACT PRO-short-label [PRO:DNx] synonym: "endophilin-3 (chicken)" EXACT [UniProtKB:Q8AXU9] @@ -239766,7 +240609,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q8AXV1 name: endophilin-A1 (chicken) namespace: protein -def: "An endophilin-A1 that is encoded in the genome of chicken." [OMA:Q8AXV1, PANTHER:PTHR10661\:SF28, PRO:DNx] +def: "An endophilin-A1 that is encoded in the genome of chicken." [OMA:Q8AXV1, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SH3GL2" EXACT PRO-short-label [PRO:DNx] synonym: "endophilin-1 (chicken)" EXACT [UniProtKB:Q8AXV1] @@ -239786,7 +240629,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q8AXY6 name: muscle, skeletal receptor tyrosine protein kinase (chicken) namespace: protein -def: "A muscle, skeletal receptor tyrosine-protein kinase that is encoded in the genome of chicken." [PANTHER:PTHR24416\:SF187, PRO:DNx] +def: "A muscle, skeletal receptor tyrosine-protein kinase that is encoded in the genome of chicken." [OMA:Q8AXY6, PRO:DNx] comment: Category=organism-gene. synonym: "chick-MUSK" EXACT PRO-short-label [PRO:DNx] synonym: "muscle-specific kinase receptor (chicken)" EXACT [UniProtKB:Q8AXY6] @@ -239805,7 +240648,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q8AYD0 name: cadherin-5 (chicken) namespace: protein -def: "A cadherin-5 that is encoded in the genome of chicken." [OMA:Q8AYD0, PANTHER:PTHR24027\:SF44, PRO:DNx] +def: "A cadherin-5 that is encoded in the genome of chicken." [OMA:Q8AYD0, PRO:DNx] comment: Category=organism-gene. synonym: "CDH5" RELATED Gene-based [UniProtKB:Q8AYD0] synonym: "chick-CDH5" EXACT PRO-short-label [PRO:DNx] @@ -239946,7 +240789,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q8BFZ6 name: isopentenyl-diphosphate Delta-isomerase 2 (mouse) namespace: protein -def: "An isopentenyl-diphosphate Delta-isomerase 2 that is encoded in the genome of mouse." [OMA:Q8BFZ6, PANTHER:PTHR10885\:SF1, PRO:DNx] +def: "An isopentenyl-diphosphate Delta-isomerase 2 that is encoded in the genome of mouse." [OMA:Q8BFZ6, PRO:DNx] comment: Category=organism-gene. synonym: "Gm9745" RELATED Gene-based [UniProtKB:Q8BFZ6] synonym: "Idi2" RELATED Gene-based [UniProtKB:Q8BFZ6] @@ -240184,7 +241027,7 @@ is_a: PR:000029032 ! Mus musculus protein is_a: PR:000031219 ! prostaglandin reductase 3 intersection_of: PR:000031219 ! prostaglandin reductase 3 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2444835 ! Zadh2 (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2444835 ! Ptgr3 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -240582,13 +241425,13 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q8BGV0 -name: probable asparagine--tRNA ligase, mitochondrial (mouse) +name: asparaginyl-tRNA synthetase (mouse) namespace: protein def: "An asparagine--tRNA ligase, mitochondrial that is encoded in the genome of mouse." [OMA:Q8BGV0, PRO:DNx] comment: Category=organism-gene. synonym: "AsnRS (mouse)" BROAD [PRO:DAN] synonym: "asparagine--tRNA ligase (mouse)" BROAD [PRO:DAN] -synonym: "asparaginyl-tRNA synthetase (mouse)" BROAD [PRO:DAN] +synonym: "asparagine--tRNA ligase, mitochondrial (mouse)" EXACT [UniProtKB:Q8BGV0] synonym: "mNARS2" EXACT PRO-short-label [PRO:DNx] synonym: "Nars2" RELATED Gene-based [UniProtKB:Q8BGV0] xref: UniProtKB:Q8BGV0 @@ -241748,7 +242591,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q8BJT9 name: ER degradation-enhancing alpha-mannosidase-like protein 2 (mouse) namespace: protein -def: "An ER degradation-enhancing alpha-mannosidase-like protein 2 that is encoded in the genome of mouse." [OMA:Q8BJT9, PANTHER:PTHR11742\:SF10, PRO:DNx] +def: "An ER degradation-enhancing alpha-mannosidase-like protein 2 that is encoded in the genome of mouse." [OMA:Q8BJT9, PRO:DNx] comment: Category=organism-gene. synonym: "Edem2" RELATED Gene-based [UniProtKB:Q8BJT9] synonym: "mEDEM2" EXACT PRO-short-label [PRO:DNx] @@ -242785,7 +243628,7 @@ synonym: "asparaginyl-tRNA synthetase (mouse)" BROAD [PRO:DAN] synonym: "asparaginyl-tRNA synthetase 1 (mouse)" EXACT [UniProtKB:Q8BP47] synonym: "mNARS" EXACT PRO-short-label [PRO:DNx] synonym: "Nars" RELATED Gene-based [UniProtKB:Q8BP47] -synonym: "NARS1" RELATED Gene-based [UniProtKB:Q8BP47] +synonym: "Nars1" RELATED Gene-based [UniProtKB:Q8BP47] xref: UniProtKB:Q8BP47 is_a: PR:000010992 ! asparagine--tRNA ligase, cytoplasmic is_a: PR:000029032 ! Mus musculus protein @@ -243021,18 +243864,20 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q8BQS4 -name: protein FAM102B (mouse) +name: EEIG family member 2 (mouse) namespace: protein -def: "A protein FAM102B that is encoded in the genome of mouse." [OMA:Q8BQS4, PRO:DNx] +def: "An EEIG family member 2 that is encoded in the genome of mouse." [OMA:Q8BQS4, PRO:DNx] comment: Category=organism-gene. +synonym: "Eeig2" RELATED Gene-based [UniProtKB:Q8BQS4] +synonym: "EEIG2 (mouse)" EXACT [UniProtKB:Q8BQS4] synonym: "Fam102b" RELATED Gene-based [UniProtKB:Q8BQS4] -synonym: "mFAM102B" EXACT PRO-short-label [PRO:DNx] +synonym: "mEEIG2" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:Q8BQS4 is_a: PR:000029032 ! Mus musculus protein -is_a: PR:000029452 ! protein FAM102B -intersection_of: PR:000029452 ! protein FAM102B +is_a: PR:000029452 ! EEIG family member 2 +intersection_of: PR:000029452 ! EEIG family member 2 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:3036259 ! Fam102b (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:3036259 ! Eeig2 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -244257,7 +245102,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q8BX09 name: retinoblastoma-binding protein 5 (mouse) namespace: protein -def: "A retinoblastoma-binding protein 5 that is encoded in the genome of mouse." [OMA:Q8BX09, PANTHER:PTHR12816\:SF5, PRO:DNx] +def: "A retinoblastoma-binding protein 5 that is encoded in the genome of mouse." [OMA:Q8BX09, PRO:DNx] comment: Category=organism-gene. synonym: "mRBBP5" EXACT PRO-short-label [PRO:DNx] synonym: "RBBP-5 (mouse)" EXACT [UniProtKB:Q8BX09] @@ -244452,7 +245297,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q8BYB9 name: protein O-glucosyltransferase 1 (mouse) namespace: protein -def: "A protein O-glucosyltransferase 1 that is encoded in the genome of mouse." [OMA:Q8BYB9, PANTHER:PTHR12203\:SF6, PRO:DNx] +def: "A protein O-glucosyltransferase 1 that is encoded in the genome of mouse." [OMA:Q8BYB9, PRO:DNx] comment: Category=organism-gene. synonym: "CAP10-like 46 kDa protein (mouse)" EXACT [UniProtKB:Q8BYB9] synonym: "Clp46" RELATED Gene-based [UniProtKB:Q8BYB9] @@ -244527,7 +245372,7 @@ is_a: PR:000006690 ! dorsal root ganglia homeobox protein is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000006690 ! dorsal root ganglia homeobox protein intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2148204 ! Prrxl1 (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2148204 ! Drgx (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -244816,7 +245661,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q8BZH1 name: protein-glutamine gamma-glutamyltransferase 4 (mouse) namespace: protein -def: "A protein-glutamine gamma-glutamyltransferase 4 that is encoded in the genome of mouse." [OMA:Q8BZH1, PANTHER:PTHR11590\:SF11, PRO:DNx] +def: "A protein-glutamine gamma-glutamyltransferase 4 that is encoded in the genome of mouse." [OMA:Q8BZH1, PRO:DNx] comment: Category=organism-gene. synonym: "Eapa1" RELATED Gene-based [UniProtKB:Q8BZH1] synonym: "experimental autoimmune prostatitis antigen 1 (mouse)" EXACT [UniProtKB:Q8BZH1] @@ -244879,6 +245724,8 @@ synonym: "Dcun1d2" RELATED Gene-based [UniProtKB:Q8BZJ7] synonym: "Dcun1l2" RELATED Gene-based [UniProtKB:Q8BZJ7] synonym: "defective in cullin neddylation protein 1-like protein 2 (mouse)" EXACT [UniProtKB:Q8BZJ7] synonym: "mDCUN1D2" EXACT PRO-short-label [PRO:DNx] +synonym: "SCCRO2" RELATED Gene-based [UniProtKB:Q8BZJ7] +synonym: "squamous cell carcinoma-related oncogene 2 (mouse)" EXACT [UniProtKB:Q8BZJ7] xref: UniProtKB:Q8BZJ7 is_a: PR:000006331 ! DCN1-like protein 2 is_a: PR:000029032 ! Mus musculus protein @@ -246939,25 +247786,26 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q8CF31 name: protein Frey (mouse) namespace: protein -def: "A protein Frey that is encoded in the genome of mouse." [OMA:Q8CF31, PRO:DNx] +def: "A protein Frey 1 that is encoded in the genome of mouse." [OMA:Q8CF31, PRO:DNx] comment: Category=organism-gene. -synonym: "1700029I15Rik" RELATED Gene-based [UniProtKB:Q8CF31] synonym: "Frey" RELATED Gene-based [UniProtKB:Q8CF31] -synonym: "mC11orf94" EXACT PRO-short-label [PRO:DNx] -synonym: "protein C11orf94 homolog (mouse)" EXACT [UniProtKB:Q8CF31] +synonym: "Frey regulator of sperm-oocyte fusion 1 (mouse)" EXACT [UniProtKB:Q8CF31] +synonym: "Frey1" RELATED Gene-based [UniProtKB:Q8CF31] +synonym: "FREY1 (mouse)" EXACT [UniProtKB:Q8CF31] +synonym: "mFREY1" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:Q8CF31 is_a: PR:000029032 ! Mus musculus protein -is_a: PR:000059732 ! protein Frey -intersection_of: PR:000059732 ! protein Frey +is_a: PR:000059732 ! protein Frey 1 +intersection_of: PR:000059732 ! protein Frey 1 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1916742 ! 1700029I15Rik (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1916742 ! Frey1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q8CF60 name: zinc finger protein 263 (mouse) namespace: protein -def: "A zinc finger protein 263 that is encoded in the genome of mouse." [OMA:Q8CF60, PANTHER:PTHR23226\:SF5, PRO:DNx] +def: "A zinc finger protein 263 that is encoded in the genome of mouse." [OMA:Q8CF60, PRO:DNx] comment: Category=organism-gene. synonym: "FPM315" RELATED Gene-based [UniProtKB:Q8CF60] synonym: "mZNF263" EXACT PRO-short-label [PRO:DNx] @@ -247094,8 +247942,10 @@ name: extracellular sulfatase Sulf-2 (mouse) namespace: protein def: "An extracellular sulfatase Sulf-2 that is encoded in the genome of mouse." [OMA:Q8CFG0, PRO:DNx] comment: Category=organism-gene. +synonym: "arylsulfatase (mouse)" RELATED [UniProtKB:Q8CFG0] synonym: "mSulf-2" EXACT [UniProtKB:Q8CFG0] synonym: "mSULF2" EXACT PRO-short-label [PRO:DNx] +synonym: "N-acetylglucosamine-6-sulfatase (mouse)" RELATED [UniProtKB:Q8CFG0] synonym: "Sulf2" RELATED Gene-based [UniProtKB:Q8CFG0] xref: UniProtKB:Q8CFG0 is_a: PR:000015817 ! extracellular sulfatase Sulf-2 @@ -249083,9 +249933,11 @@ name: extracellular sulfatase Sulf-2 (human) namespace: protein def: "An extracellular sulfatase Sulf-2 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q8IWU5] comment: Category=organism-gene. +synonym: "arylsulfatase (human)" RELATED [UniProtKB:Q8IWU5] synonym: "hSulf-2" EXACT [UniProtKB:Q8IWU5] synonym: "hSULF2" EXACT PRO-short-label [PRO:DNx] synonym: "KIAA1247" RELATED Gene-based [UniProtKB:Q8IWU5] +synonym: "N-acetylglucosamine-6-sulfatase (human)" RELATED [UniProtKB:Q8IWU5] synonym: "SULF2" RELATED Gene-based [UniProtKB:Q8IWU5] synonym: "UNQ559/PRO1120" RELATED Gene-based [UniProtKB:Q8IWU5] xref: UniProtKB:Q8IWU5 @@ -249718,11 +250570,13 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q8IZF7 -name: adhesion G-protein coupled receptor F2 (human) +name: putative adhesion G protein-coupled receptor F2P (human) namespace: protein -def: "An adhesion G-protein coupled receptor F2 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q8IZF7] +def: "A putative adhesion G protein-coupled receptor F2P that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q8IZF7] comment: Category=organism-gene. synonym: "ADGRF2" RELATED Gene-based [UniProtKB:Q8IZF7] +synonym: "ADGRF2P" RELATED Gene-based [UniProtKB:Q8IZF7] +synonym: "adhesion G-protein coupled receptor F2 (human)" EXACT [UniProtKB:Q8IZF7] synonym: "G-protein coupled receptor 111 (human)" EXACT [] synonym: "G-protein coupled receptor PGR20 (human)" EXACT [UniProtKB:Q8IZF7] synonym: "GPR111" RELATED Gene-based [UniProtKB:Q8IZF7] @@ -249731,8 +250585,8 @@ synonym: "PGR20" RELATED Gene-based [UniProtKB:Q8IZF7] xref: DTO:02100130 xref: UniProtKB:Q8IZF7 is_a: PR:000029067 ! Homo sapiens protein -is_a: PR:000031052 ! adhesion G-protein coupled receptor F2 -intersection_of: PR:000031052 ! adhesion G-protein coupled receptor F2 +is_a: PR:000031052 ! putative adhesion G protein-coupled receptor F2P +intersection_of: PR:000031052 ! putative adhesion G protein-coupled receptor F2P intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -250036,7 +250890,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q8JFP1 name: eukaryotic initiation factor 4A-II (chicken) namespace: protein -def: "A eukaryotic initiation factor 4A-II that is encoded in the genome of chicken." [PANTHER:PTHR24031\:SF2, PRO:DNx] +def: "A eukaryotic initiation factor 4A-II that is encoded in the genome of chicken." [OMA:Q8JFP1, PRO:DNx] comment: Category=organism-gene. synonym: "ATP-dependent RNA helicase eIF4A-2 (chicken)" EXACT [UniProtKB:Q8JFP1] synonym: "chick-EIF4A2" EXACT PRO-short-label [PRO:DNx] @@ -250075,7 +250929,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q8JG33 name: WAP four-disulfide core domain protein 1 (chicken) namespace: protein -def: "A WAP four-disulfide core domain protein 1 that is encoded in the genome of chicken." [OMA:Q8JG33, PANTHER:PTHR14308\:SF0, PRO:DNx] +def: "A WAP four-disulfide core domain protein 1 that is encoded in the genome of chicken." [OMA:Q8JG33, PRO:DNx] comment: Category=organism-gene. synonym: "chick-WFDC1" EXACT PRO-short-label [PRO:DNx] synonym: "protein ps20 (chicken)" EXACT [UniProtKB:Q8JG33] @@ -250093,7 +250947,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q8JGM4 name: sulfhydryl oxidase 1 (chicken) namespace: protein -def: "A sulfhydryl oxidase 1 that is encoded in the genome of chicken." [OMA:Q8JGM4, PANTHER:PTHR22897\:SF6, PRO:DNx] +def: "A sulfhydryl oxidase 1 that is encoded in the genome of chicken." [OMA:Q8JGM4, PRO:DNx] comment: Category=organism-gene. synonym: "chick-QSOX1" EXACT PRO-short-label [PRO:DNx] synonym: "QSCN6" RELATED Gene-based [UniProtKB:Q8JGM4] @@ -250147,7 +251001,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q8JHU0 name: homeodomain-only protein (chicken) namespace: protein -def: "A homeodomain-only protein that is encoded in the genome of chicken." [OMA:Q8JHU0, PANTHER:PTHR21408\:SF0, PRO:DNx] +def: "A homeodomain-only protein that is encoded in the genome of chicken." [OMA:Q8JHU0, PRO:DNx] comment: Category=organism-gene. synonym: "chick-HOPX" EXACT PRO-short-label [PRO:DNx] synonym: "HOD" RELATED Gene-based [UniProtKB:Q8JHU0] @@ -250402,7 +251256,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q8JZU2 name: tricarboxylate transport protein, mitochondrial (mouse) namespace: protein -def: "A tricarboxylate transport protein, mitochondrial that is encoded in the genome of mouse." [OMA:Q8JZU2, PANTHER:PTHR24089\:SF62, PRO:DNx] +def: "A tricarboxylate transport protein, mitochondrial that is encoded in the genome of mouse." [OMA:Q8JZU2, PRO:DNx] comment: Category=organism-gene. synonym: "citrate transport protein (mouse)" EXACT [UniProtKB:Q8JZU2] synonym: "CTP (mouse)" EXACT [UniProtKB:Q8JZU2] @@ -250756,6 +251610,8 @@ synonym: "DCUN1 domain-containing protein 3 (mouse)" EXACT [UniProtKB:Q8K0V2] synonym: "Dcun1d3" RELATED Gene-based [UniProtKB:Q8K0V2] synonym: "defective in cullin neddylation protein 1-like protein 3 (mouse)" EXACT [UniProtKB:Q8K0V2] synonym: "mDCUN1D3" EXACT PRO-short-label [PRO:DNx] +synonym: "SCCRO3" RELATED Gene-based [UniProtKB:Q8K0V2] +synonym: "squamous cell carcinoma-related oncogene 3 (mouse)" EXACT [UniProtKB:Q8K0V2] xref: UniProtKB:Q8K0V2 is_a: PR:000006332 ! DCN1-like protein 3 is_a: PR:000029032 ! Mus musculus protein @@ -250860,6 +251716,23 @@ intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1914759 ! Saysd1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: PR:Q8K1E0 +name: syntaxin-5 (mouse) +namespace: protein +def: "A syntaxin-5 that is encoded in the genome of mouse." [OMA:Q8K1E0, PRO:DNx] +comment: Category=organism-gene. +synonym: "mSTX5" EXACT PRO-short-label [PRO:DNx] +synonym: "Stx5" RELATED Gene-based [UniProtKB:Q8K1E0] +synonym: "Stx5a" RELATED Gene-based [UniProtKB:Q8K1E0] +xref: UniProtKB:Q8K1E0 +is_a: PR:000015797 ! syntaxin-5 +is_a: PR:000029032 ! Mus musculus protein +intersection_of: PR:000015797 ! syntaxin-5 +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1928483 ! Stx5a (mouse) +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: PR:Q8K1E3 name: protein delta homolog 2 (mouse) @@ -251299,18 +252172,19 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q8K2M0 -name: 39S ribosomal protein L38, mitochondrial (mouse) +name: large ribosomal subunit protein mL38 (mouse) namespace: protein -def: "A 39S ribosomal protein L38, mitochondrial that is encoded in the genome of mouse." [OMA:Q8K2M0, PRO:DNx] +def: "A large ribosomal subunit protein mL38 that is encoded in the genome of mouse." [OMA:Q8K2M0, PRO:DNx] comment: Category=organism-gene. +synonym: "39S ribosomal protein L38, mitochondrial (mouse)" EXACT [UniProtKB:Q8K2M0] synonym: "L38mt (mouse)" EXACT [UniProtKB:Q8K2M0] synonym: "mMRPL38" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-L38 (mouse)" EXACT [UniProtKB:Q8K2M0] synonym: "Mrpl38" RELATED Gene-based [UniProtKB:Q8K2M0] xref: UniProtKB:Q8K2M0 -is_a: PR:000010598 ! 39S ribosomal protein L38, mitochondrial +is_a: PR:000010598 ! large ribosomal subunit protein mL38 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000010598 ! 39S ribosomal protein L38, mitochondrial +intersection_of: PR:000010598 ! large ribosomal subunit protein mL38 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1926269 ! Mrpl38 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -251496,7 +252370,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q8K354 name: carbonyl reductase [NADPH] 3 (mouse) namespace: protein -def: "A carbonyl reductase [NADPH] 3 that is encoded in the genome of mouse." [OMA:Q8K354, PANTHER:PTHR24322\:SF19, PRO:DNx] +def: "A carbonyl reductase [NADPH] 3 that is encoded in the genome of mouse." [OMA:Q8K354, PRO:DNx] comment: Category=organism-gene. synonym: "Cbr3" RELATED Gene-based [UniProtKB:Q8K354] synonym: "mCBR3" EXACT PRO-short-label [PRO:DNx] @@ -251662,6 +252536,9 @@ name: DNA polymerase beta (mouse) namespace: protein def: "A DNA polymerase beta that is encoded in the genome of mouse." [OMA:Q8K409, PRO:DNx] comment: Category=organism-gene. +synonym: "5'-deoxyribose-phosphate lyase (mouse)" EXACT [UniProtKB:Q8K409] +synonym: "5'-dRP lyase (mouse)" EXACT [UniProtKB:Q8K409] +synonym: "AP lyase (mouse)" EXACT [UniProtKB:Q8K409] synonym: "mPOLB" EXACT PRO-short-label [PRO:DNx] synonym: "Polb" RELATED Gene-based [UniProtKB:Q8K409] xref: UniProtKB:Q8K409 @@ -252495,6 +253372,7 @@ synonym: "CCDC23" RELATED Gene-based [UniProtKB:Q8N300] synonym: "coiled coil domain-containing protein 23 (human)" EXACT [UniProtKB:Q8N300] synonym: "hSVBP" EXACT PRO-short-label [PRO:DNx] synonym: "SVBP" RELATED Gene-based [UniProtKB:Q8N300] +xref: Reactome:R-HSA-9701916 "PR:Q8N300 located_in GO:0005829" xref: UniProtKB:Q8N300 is_a: PR:000029067 ! Homo sapiens protein is_a: PR:000031911 ! small vasohibin-binding protein @@ -252553,6 +253431,7 @@ synonym: "jumonji C domain-containing protein 5 (human)" EXACT [UniProtKB:Q8N371 synonym: "KDM8" RELATED Gene-based [UniProtKB:Q8N371] synonym: "L-arginine (3R)-hydroxylase KDM8 (human)" EXACT [UniProtKB:Q8N371] xref: Reactome:R-HSA-8862783 "PR:Q8N371 located_in GO:0005654" +xref: Reactome:R-HSA-9629868 "PR:Q8N371 located_in GO:0005829" xref: UniProtKB:Q8N371 is_a: PR:000029067 ! Homo sapiens protein is_a: PR:000031588 ! bifunctional peptidase and arginyl-hydroxylase JMJD5 @@ -252649,6 +253528,7 @@ synonym: "MPP5" RELATED Gene-based [UniProtKB:Q8N3R9] synonym: "PALS1" RELATED Gene-based [UniProtKB:Q8N3R9] synonym: "protein associated with Lin-7 1 (human)" EXACT [UniProtKB:Q8N3R9] xref: Reactome:R-HSA-419969 "PR:Q8N3R9 located_in GO:0005886" +xref: Reactome:R-HSA-9689606 "PR:Q8N3R9 located_in GO:0033116" xref: UniProtKB:Q8N3R9 is_a: PR:000010546 ! protein PALS1 is_a: PR:000029067 ! Homo sapiens protein @@ -253087,6 +253967,7 @@ synonym: "MACO1" RELATED Gene-based [UniProtKB:Q8N5G2] synonym: "macoilin-1 (human)" EXACT [UniProtKB:Q8N5G2] synonym: "TMEM57" RELATED Gene-based [UniProtKB:Q8N5G2] synonym: "transmembrane protein 57 (human)" EXACT [UniProtKB:Q8N5G2] +xref: Reactome:R-HSA-9714351 "PR:Q8N5G2 located_in GO:0005789" xref: UniProtKB:Q8N5G2 is_a: PR:000016434 ! macoilin is_a: PR:000029067 ! Homo sapiens protein @@ -254123,20 +255004,22 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q8NB90 -name: ribosome biogenesis protein SPATA5 (human) +name: ATPase family gene 2 protein homolog A (human) namespace: protein -def: "A ribosome biogenesis protein SPATA5 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q8NB90] +def: "An ATPase family gene 2 protein homolog A that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q8NB90] comment: Category=organism-gene. -synonym: "AFG2" RELATED Gene-based [UniProtKB:Q8NB90] -synonym: "hSPATA5" EXACT PRO-short-label [PRO:DNx] +synonym: "AFG2 AAA ATPase homolog A (human)" EXACT [UniProtKB:Q8NB90] +synonym: "AFG2A" RELATED Gene-based [UniProtKB:Q8NB90] +synonym: "hAFG2A" EXACT PRO-short-label [PRO:DNx] +synonym: "ribosome biogenesis protein SPATA5 (human)" EXACT [UniProtKB:Q8NB90] synonym: "SPAF" RELATED Gene-based [UniProtKB:Q8NB90] synonym: "SPATA5" RELATED Gene-based [UniProtKB:Q8NB90] synonym: "spermatogenesis-associated factor protein (human)" EXACT [UniProtKB:Q8NB90] synonym: "spermatogenesis-associated protein 5 (human)" EXACT [PRO:DNx] xref: UniProtKB:Q8NB90 -is_a: PR:000015492 ! ribosome biogenesis protein SPATA5 +is_a: PR:000015492 ! ATPase family gene 2 protein homolog A is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000015492 ! ribosome biogenesis protein SPATA5 +intersection_of: PR:000015492 ! ATPase family gene 2 protein homolog A intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -255515,7 +256398,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q8QFP8 name: LIM domain kinase 1 (chicken) namespace: protein -def: "A LIM domain kinase 1 that is encoded in the genome of chicken." [OMA:Q8QFP8, PANTHER:PTHR23257\:SF94, PRO:DNx] +def: "A LIM domain kinase 1 that is encoded in the genome of chicken." [OMA:Q8QFP8, PRO:DNx] comment: Category=organism-gene. synonym: "chick-LIMK1" EXACT PRO-short-label [PRO:DNx] synonym: "chLIMK1 (chicken)" EXACT [UniProtKB:Q8QFP8] @@ -255533,7 +256416,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q8QGH2 name: small ubiquitin-related modifier 1 (chicken) namespace: protein -def: "A small ubiquitin-related modifier 1 that is encoded in the genome of chicken." [OMA:Q8QGH2, PANTHER:PTHR10562\:SF8, PRO:DNx] +def: "A small ubiquitin-related modifier 1 that is encoded in the genome of chicken." [OMA:Q8QGH2, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SUMO1" EXACT PRO-short-label [PRO:DNx] synonym: "RCJMB04_2j18" RELATED Gene-based [UniProtKB:Q8QGH2] @@ -255551,7 +256434,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q8QGH3 name: cadherin-20 (chicken) namespace: protein -def: "A cadherin-20 that is encoded in the genome of chicken." [OMA:Q8QGH3, PANTHER:PTHR24027\:SF108, PRO:DNx] +def: "A cadherin-20 that is encoded in the genome of chicken." [OMA:Q8QGH3, PRO:DNx] comment: Category=organism-gene. synonym: "CDH20" RELATED Gene-based [UniProtKB:Q8QGH3] synonym: "chick-CDH20" EXACT PRO-short-label [PRO:DNx] @@ -255849,7 +256732,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q8R035 -name: peptidyl-tRNA hydrolase ICT1, mitochondrial (mouse) +name: large ribosomal subunit protein mL62 (mouse) namespace: protein def: "An immature colon carcinoma transcript 1 protein that is encoded in the genome of mouse." [OMA:Q8R035, PRO:DNx] comment: Category=organism-gene. @@ -255859,6 +256742,7 @@ synonym: "immature colon carcinoma transcript 1 protein homolog (mouse)" EXACT [ synonym: "mMRPL58" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-L58 (mouse)" EXACT [UniProtKB:Q8R035] synonym: "Mrpl58" RELATED Gene-based [UniProtKB:Q8R035] +synonym: "peptidyl-tRNA hydrolase ICT1, mitochondrial (mouse)" EXACT [UniProtKB:Q8R035] xref: UniProtKB:Q8R035 is_a: PR:000008885 ! immature colon carcinoma transcript 1 protein is_a: PR:000029032 ! Mus musculus protein @@ -256394,19 +257278,20 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q8R1C3 -name: vesicular, overexpressed in cancer, prosurvival protein 1 (mouse) +name: WW domain binding protein VOPP1 (mouse) namespace: protein -def: "A vesicular, overexpressed in cancer, prosurvival protein 1 that is encoded in the genome of mouse." [OMA:Q8R1C3, PRO:DNx] +def: "A WW domain binding protein VOPP1 that is encoded in the genome of mouse." [OMA:Q8R1C3, PRO:DNx] comment: Category=organism-gene. synonym: "Ecop" RELATED Gene-based [UniProtKB:Q8R1C3] synonym: "ECop (mouse)" EXACT [UniProtKB:Q8R1C3] synonym: "EGFR-coamplified and overexpressed protein (mouse)" EXACT [UniProtKB:Q8R1C3] synonym: "mVOPP1" EXACT PRO-short-label [PRO:DNx] +synonym: "vesicular, overexpressed in cancer, prosurvival protein 1 (mouse)" EXACT [UniProtKB:Q8R1C3] synonym: "Vopp1" RELATED Gene-based [UniProtKB:Q8R1C3] xref: UniProtKB:Q8R1C3 -is_a: PR:000006882 ! vesicular, overexpressed in cancer, prosurvival protein 1 +is_a: PR:000006882 ! WW domain binding protein VOPP1 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000006882 ! vesicular, overexpressed in cancer, prosurvival protein 1 +intersection_of: PR:000006882 ! WW domain binding protein VOPP1 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2141658 ! Vopp1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -256614,7 +257499,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q8R1U2 name: cell growth regulator with EF hand domain protein 1 (mouse) namespace: protein -def: "A cell growth regulator with EF hand domain protein 1 that is encoded in the genome of mouse." [OMA:Q8R1U2, PRO:DNx] +def: "A cell growth regulator with EF hand domain protein 1 that is encoded in the genome of mouse." [PRO:DNx] comment: Category=organism-gene. synonym: "cell growth regulatory gene 11 protein (mouse)" EXACT [UniProtKB:Q8R1U2] synonym: "Cgr11" RELATED Gene-based [UniProtKB:Q8R1U2] @@ -256666,7 +257551,7 @@ is_a: PR:000015518 ! spartin is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000015518 ! spartin intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2139806 ! Spg20 (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2139806 ! Spart (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -258016,6 +258901,7 @@ synonym: "STB2" RELATED Gene-based [UniProtKB:Q8TAA9] synonym: "strabismus 2 (human)" EXACT [UniProtKB:Q8TAA9] synonym: "Van Gogh-like protein 1 (human)" EXACT [UniProtKB:Q8TAA9] synonym: "VANGL1" RELATED Gene-based [UniProtKB:Q8TAA9] +xref: Reactome:R-HSA-9714275 "PR:Q8TAA9 located_in GO:0005886" xref: UniProtKB:Q8TAA9 is_a: PR:000017255 ! Vang-like protein 1 is_a: PR:000029067 ! Homo sapiens protein @@ -258072,6 +258958,7 @@ synonym: "ZNT5" RELATED Gene-based [UniProtKB:Q8TAD4] synonym: "ZNTL1" RELATED Gene-based [UniProtKB:Q8TAD4] synonym: "ZTL1" RELATED Gene-based [UniProtKB:Q8TAD4] xref: Reactome:R-HSA-437105 "PR:Q8TAD4 located_in GO:0030667" +xref: Reactome:R-HSA-9817559 "PR:Q8TAD4 located_in GO:0000139" xref: UniProtKB:Q8TAD4 is_a: PR:000015078 ! proton-coupled zinc antiporter SLC30A5 is_a: PR:000029067 ! Homo sapiens protein @@ -258088,6 +258975,7 @@ comment: Category=organism-gene. synonym: "FHA domain-containing protein SNIP1 (human)" EXACT [UniProtKB:Q8TAD8] synonym: "hSNIP1" EXACT PRO-short-label [PRO:DNx] synonym: "SNIP1" RELATED Gene-based [UniProtKB:Q8TAD8] +xref: Reactome:R-HSA-3222315 "PR:Q8TAD8 located_in GO:0005654" xref: UniProtKB:Q8TAD8 is_a: PR:000015328 ! smad nuclear-interacting protein 1 is_a: PR:000029067 ! Homo sapiens protein @@ -258097,17 +258985,17 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q8TAE8 -name: growth arrest and DNA damage-inducible proteins-interacting protein 1 (human) +name: large ribosomal subunit protein mL64 (human) namespace: protein -def: "A growth arrest and DNA damage-inducible proteins-interacting protein 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q8TAE8] +def: "A large ribosomal subunit protein mL64 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q8TAE8] comment: Category=organism-gene. synonym: "39S ribosomal protein L59, mitochondrial (human)" EXACT [UniProtKB:Q8TAE8] synonym: "CKII beta-associating protein (human)" EXACT [UniProtKB:Q8TAE8] synonym: "CR6-interacting factor 1 (human)" EXACT [UniProtKB:Q8TAE8] synonym: "CRIF1 (human)" EXACT [UniProtKB:Q8TAE8] synonym: "GADD45GIP1" RELATED Gene-based [UniProtKB:Q8TAE8] +synonym: "growth arrest and DNA damage-inducible proteins-interacting protein 1 (human)" EXACT [UniProtKB:Q8TAE8] synonym: "hGADD45GIP1" EXACT PRO-short-label [PRO:DNx] -synonym: "mitochondrial large ribosomal subunit protein mL64 (human)" EXACT [UniProtKB:Q8TAE8] synonym: "MRP-L59 (human)" EXACT [UniProtKB:Q8TAE8] synonym: "MRPL59" RELATED Gene-based [UniProtKB:Q8TAE8] synonym: "p53-responsive gene 6 protein (human)" EXACT [UniProtKB:Q8TAE8] @@ -258118,9 +259006,9 @@ synonym: "PLINP1" RELATED Gene-based [UniProtKB:Q8TAE8] synonym: "PRG6" RELATED Gene-based [UniProtKB:Q8TAE8] xref: Reactome:R-HSA-5368253 "PR:Q8TAE8 located_in GO:0005759" xref: UniProtKB:Q8TAE8 -is_a: PR:000007790 ! growth arrest and DNA damage-inducible proteins-interacting protein 1 +is_a: PR:000007790 ! large ribosomal subunit protein mL64 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000007790 ! growth arrest and DNA damage-inducible proteins-interacting protein 1 +intersection_of: PR:000007790 ! large ribosomal subunit protein mL64 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -259547,7 +260435,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q8UVJ7 name: cadherin-related family member 1 (chicken) namespace: protein -def: "A cadherin-related family member 1 that is encoded in the genome of chicken." [PANTHER:PTHR24027\:SF69, PRO:DNx] +def: "A cadherin-related family member 1 that is encoded in the genome of chicken." [OMA:Q8UVJ7, PRO:DNx] comment: Category=organism-gene. synonym: "CDHR1" RELATED Gene-based [UniProtKB:Q8UVJ7] synonym: "chick-CDHR1" EXACT PRO-short-label [PRO:DNx] @@ -259571,6 +260459,7 @@ namespace: protein def: "A thioredoxin-related transmembrane protein 1 that is encoded in the genome of mouse." [OMA:Q8VBT0, PRO:DNx] comment: Category=organism-gene. synonym: "mTMX1" EXACT PRO-short-label [PRO:DNx] +synonym: "protein disulfide-isomerase TMX1 (mouse)" EXACT [UniProtKB:Q8VBT0] synonym: "thioredoxin domain-containing protein 1 (mouse)" EXACT [UniProtKB:Q8VBT0] synonym: "Tmx1" RELATED Gene-based [UniProtKB:Q8VBT0] synonym: "Txndc" RELATED Gene-based [UniProtKB:Q8VBT0] @@ -260549,6 +261438,23 @@ intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:99256 ! Hdlbp (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: PR:Q8VDK3 +name: ETS-related transcription factor Elf-5 (mouse) +namespace: protein +def: "An ETS-related transcription factor Elf-5 that is encoded in the genome of mouse." [OMA:Q8VDK3, PRO:DNx] +comment: Category=organism-gene. +synonym: "E74-like factor 5 (mouse)" EXACT [UniProtKB:Q8VDK3] +synonym: "Elf5" RELATED Gene-based [UniProtKB:Q8VDK3] +synonym: "mELF5" EXACT PRO-short-label [PRO:DNx] +xref: UniProtKB:Q8VDK3 +is_a: PR:000007024 ! ETS-related transcription factor Elf-5 +is_a: PR:000029032 ! Mus musculus protein +intersection_of: PR:000007024 ! ETS-related transcription factor Elf-5 +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1335079 ! Elf5 (mouse) +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: PR:Q8VDL4 name: ADP-dependent glucokinase (mouse) @@ -261748,18 +262654,21 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q8WUF8 -name: cotranscriptional regulator FAM172A (human) +name: cotranscriptional regulator ARB2A (human) namespace: protein -def: "A cotranscriptional regulator FAM172A that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q8WUF8] +def: "A cotranscriptional regulator ARB2A that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q8WUF8] comment: Category=organism-gene. +synonym: "ARB2 cotranscriptional regulator A (human)" EXACT [UniProtKB:Q8WUF8] +synonym: "ARB2A" RELATED Gene-based [UniProtKB:Q8WUF8] synonym: "C5orf21" RELATED Gene-based [UniProtKB:Q8WUF8] +synonym: "cotranscriptional regulator FAM172A (human)" EXACT [UniProtKB:Q8WUF8] synonym: "FAM172A" RELATED Gene-based [UniProtKB:Q8WUF8] -synonym: "hFAM172A" EXACT PRO-short-label [PRO:DNx] +synonym: "hARB2A" EXACT PRO-short-label [PRO:DNx] synonym: "protein FAM172A (human)" EXACT [UniProtKB:Q8WUF8] xref: UniProtKB:Q8WUF8 is_a: PR:000029067 ! Homo sapiens protein -is_a: PR:000030727 ! cotranscriptional regulator FAM172A -intersection_of: PR:000030727 ! cotranscriptional regulator FAM172A +is_a: PR:000030727 ! cotranscriptional regulator ARB2A +intersection_of: PR:000030727 ! cotranscriptional regulator ARB2A intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -263230,7 +264139,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90611 name: 72 kDa type IV collagenase (chicken) namespace: protein -def: "A 72 kDa type IV collagenase that is encoded in the genome of chicken." [OMA:Q90611, PANTHER:PTHR10201\:SF29, PRO:DNx] +def: "A 72 kDa type IV collagenase that is encoded in the genome of chicken." [OMA:Q90611, PRO:DNx] comment: Category=organism-gene. synonym: "72 kDa gelatinase (chicken)" EXACT [UniProtKB:Q90611] synonym: "chick-MMP2" EXACT PRO-short-label [PRO:DNx] @@ -263268,7 +264177,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90667 name: neuronal regeneration-related protein (chicken) namespace: protein -def: "A neuronal regeneration-related protein that is encoded in the genome of chicken." [PRO:DNx] +def: "A neuronal regeneration-related protein that is encoded in the genome of chicken." [OMA:Q90667, PRO:DNx] comment: Category=organism-gene. synonym: "chick-NREP" EXACT PRO-short-label [PRO:DNx] synonym: "neuronal protein 3.1 (chicken)" EXACT [UniProtKB:Q90667] @@ -263305,7 +264214,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90670 name: activin receptor type-2B (chicken) namespace: protein -def: "An activin receptor type-2B that is encoded in the genome of chicken." [PRO:CNA] +def: "An activin receptor type-2B that is encoded in the genome of chicken." [OMA:Q90670, PRO:DNx] comment: Category=organism-gene. synonym: "activin receptor type IIB (chicken)" EXACT [UniProtKB:Q90670] synonym: "ACTR-IIB (chicken)" EXACT [UniProtKB:Q90670] @@ -263323,7 +264232,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90674 name: lutropin-choriogonadotropic hormone receptor (chicken) namespace: protein -def: "A lutropin-choriogonadotropic hormone receptor that is encoded in the genome of chicken." [PRO:WCB] +def: "A lutropin-choriogonadotropic hormone receptor that is encoded in the genome of chicken." [OMA:Q90674, PRO:DNx] comment: Category=organism-gene. synonym: "chick-LHCGR" EXACT PRO-short-label [PRO:DNx] synonym: "cLH-R (chicken)" EXACT [UniProtKB:Q90674] @@ -263379,7 +264288,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90694 name: cell division control protein 42 homolog (chicken) namespace: protein -def: "A cell division control protein 42 that is encoded in the genome of chicken." [OMA:Q90694, PANTHER:PTHR24072\:SF286, PRO:DNx] +def: "A cell division control protein 42 that is encoded in the genome of chicken." [OMA:Q90694, PRO:DNx] comment: Category=organism-gene. synonym: "CDC42" RELATED Gene-based [UniProtKB:Q90694] synonym: "chick-CDC42" EXACT PRO-short-label [PRO:DNx] @@ -263417,7 +264326,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90722 name: fibroblast growth factor 8 (chicken) namespace: protein -def: "A fibroblast growth factor 8 that is encoded in the genome of chicken." [OMA:Q90722, PANTHER:PTHR11486\:SF2, PRO:DNx] +def: "A fibroblast growth factor 8 that is encoded in the genome of chicken." [OMA:Q90722, PRO:DNx] comment: Category=organism-gene. synonym: "chick-FGF8" EXACT PRO-short-label [PRO:DNx] synonym: "FGF-8 (chicken)" EXACT [UniProtKB:Q90722] @@ -263446,14 +264355,13 @@ is_a: PR:000003691 ! alpha-actinin-4 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000003691 ! alpha-actinin-4 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/396024 ! ACTN4 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] id: PR:Q90763 name: cadherin-7 (chicken) namespace: protein -def: "A cadherin-7 that is encoded in the genome of chicken." [OMA:Q90763, PANTHER:PTHR24027\:SF106, PRO:DNx] +def: "A cadherin-7 that is encoded in the genome of chicken." [OMA:Q90763, PRO:DNx] comment: Category=organism-gene. synonym: "CDH7" RELATED Gene-based [UniProtKB:Q90763] synonym: "chick-CDH7" EXACT PRO-short-label [PRO:DNx] @@ -263481,11 +264389,28 @@ intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=49326 ! NTM (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: PR:Q90827 +name: protein NEL (chicken) +namespace: protein +def: "A protein kinase C-binding protein NELL2 that is encoded in the genome of chicken." [OMA:Q90827, PRO:DNx] +comment: Category=organism-gene. +synonym: "93 kDa protein (chicken)" EXACT [UniProtKB:Q90827] +synonym: "chick-NELL2" EXACT PRO-short-label [PRO:DNx] +synonym: "NEL" RELATED Gene-based [UniProtKB:Q90827] +xref: UniProtKB:Q90827 +is_a: PR:000011138 ! protein kinase C-binding protein NELL2 +is_a: PR:000029063 ! Gallus gallus protein +intersection_of: PR:000011138 ! protein kinase C-binding protein NELL2 +intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus +relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/417799 ! NEL (chicken) +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: PR:Q90828 name: cytoplasmic dynein 1 light intermediate chain 1 (chicken) namespace: protein -def: "A cytoplasmic dynein 1 light intermediate chain 1 that is encoded in the genome of chicken." [OMA:Q90828, PANTHER:PTHR12688\:SF0, PRO:DNx] +def: "A cytoplasmic dynein 1 light intermediate chain 1 that is encoded in the genome of chicken." [OMA:Q90828, PRO:DNx] comment: Category=organism-gene. synonym: "chick-DYNC1LI1" EXACT PRO-short-label [PRO:DNx] synonym: "DLC-A (chicken)" EXACT [UniProtKB:Q90828] @@ -263525,7 +264450,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90871 name: interferon regulatory factor 8 (chicken) namespace: protein -def: "An interferon regulatory factor 8 that is encoded in the genome of chicken." [OMA:Q90871, PANTHER:PTHR11949\:SF7, PRO:DNx] +def: "An interferon regulatory factor 8 that is encoded in the genome of chicken." [OMA:Q90871, PRO:DNx] comment: Category=organism-gene. synonym: "chick-IRF8" EXACT PRO-short-label [PRO:DNx] synonym: "ICSBP" RELATED Gene-based [UniProtKB:Q90871] @@ -263566,7 +264491,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90879 name: ubiquitin-conjugating enzyme E2 variant 1 (chicken) namespace: protein -def: "A ubiquitin-conjugating enzyme E2 variant 1 that is encoded in the genome of chicken." [TLR:AMM] +def: "A ubiquitin-conjugating enzyme E2 variant 1 that is encoded in the genome of chicken." [OMA:Q90879, PRO:DNx] comment: Category=organism-gene. synonym: "chick-UBE2V1" EXACT PRO-short-label [PRO:DNx] synonym: "CROC-1B (chicken)" EXACT [UniProtKB:Q90879] @@ -263584,7 +264509,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90889 name: transcription factor MafG (chicken) namespace: protein -def: "A transcription factor MafG that is encoded in the genome of chicken." [OMA:Q90889, PANTHER:PTHR10129\:SF15, PRO:DNx] +def: "A transcription factor MafG that is encoded in the genome of chicken." [OMA:Q90889, PRO:DNx] comment: Category=organism-gene. synonym: "chick-MAFG" EXACT PRO-short-label [PRO:DNx] synonym: "MAFG" RELATED Gene-based [UniProtKB:Q90889] @@ -263601,7 +264526,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90890 name: lymphocyte antigen 86 (chicken) namespace: protein -def: "A lymphocyte antigen 86 that is encoded in the genome of chicken." [PANTHER:PTHR20838\:SF0, PRO:DNx] +def: "A lymphocyte antigen 86 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-LY86" EXACT PRO-short-label [PRO:DNx] synonym: "Ly-86 (chicken)" EXACT [UniProtKB:Q90890] @@ -263620,7 +264545,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90941 name: protein polybromo-1 (chicken) namespace: protein -def: "A protein polybromo-1 that is encoded in the genome of chicken." [PANTHER:PTHR16062\:SF5, PRO:DNx] +def: "A protein polybromo-1 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-PBRM1" EXACT PRO-short-label [PRO:DNx] synonym: "PB1" RELATED Gene-based [UniProtKB:Q90941] @@ -263656,7 +264581,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90953 name: versican core protein (chicken) namespace: protein -def: "A versican core protein that is encoded in the genome of chicken." [PANTHER:PTHR22804\:SF6, PRO:DNx] +def: "A versican core protein that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-VCAN" EXACT PRO-short-label [PRO:DNx] synonym: "chondroitin sulfate proteoglycan 2 (chicken)" EXACT [UniProtKB:Q90953] @@ -263713,7 +264638,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90987 name: stathmin-2 (chicken) namespace: protein -def: "A stathmin-2 that is encoded in the genome of chicken." [OMA:Q90987, PANTHER:PTHR10104\:SF7, PRO:DNx] +def: "A stathmin-2 that is encoded in the genome of chicken." [OMA:Q90987, PRO:DNx] comment: Category=organism-gene. synonym: "chick-STMN2" EXACT PRO-short-label [PRO:DNx] synonym: "protein SCG10 (chicken)" EXACT [UniProtKB:Q90987] @@ -263732,7 +264657,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90997 name: transferrin receptor protein 1 (chicken) namespace: protein -def: "A transferrin receptor protein 1 that is encoded in the genome of chicken." [PANTHER:PTHR10404\:SF26, PRO:DNx] +def: "A transferrin receptor protein 1 that is encoded in the genome of chicken." [PRO:WCB] comment: Category=organism-gene. synonym: "chick-TFRC" EXACT PRO-short-label [PRO:DNx] synonym: "TfR (chicken)" EXACT [UniProtKB:Q90997] @@ -263752,7 +264677,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90WU3 name: ATP-dependent RNA helicase DDX1 (chicken) namespace: protein -def: "An ATP-dependent RNA helicase DDX1 that is encoded in the genome of chicken." [OMA:Q90WU3, PANTHER:PTHR24031\:SF155, PRO:DNx] +def: "An ATP-dependent RNA helicase DDX1 that is encoded in the genome of chicken." [OMA:Q90WU3, PRO:DNx] comment: Category=organism-gene. synonym: "chick-DDX1" EXACT PRO-short-label [PRO:DNx] synonym: "DDX1" RELATED Gene-based [UniProtKB:Q90WU3] @@ -263769,7 +264694,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90X67 name: suppressor of cytokine signaling 3 (chicken) namespace: protein -def: "A suppressor of cytokine signaling 3 that is encoded in the genome of chicken." [OMA:Q90X67, PANTHER:PTHR10385\:SF4, PRO:DNx] +def: "A suppressor of cytokine signaling 3 that is encoded in the genome of chicken." [OMA:Q90X67, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SOCS3" EXACT PRO-short-label [PRO:DNx] synonym: "SOCS-3 (chicken)" EXACT [UniProtKB:Q90X67] @@ -263786,7 +264711,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90YH9 name: testin (chicken) namespace: protein -def: "A testin that is encoded in the genome of chicken." [OMA:Q90YH9, PANTHER:PTHR24211\:SF81, PRO:DNx] +def: "A testin that is encoded in the genome of chicken." [OMA:Q90YH9, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TES" EXACT PRO-short-label [PRO:DNx] synonym: "TES" RELATED Gene-based [UniProtKB:Q90YH9] @@ -263802,7 +264727,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q90YI0 name: interleukin-6 (chicken) namespace: protein -def: "An interleukin-6 that is encoded in the genome of chicken." [PANTHER:PTHR11457\:SF0, PRO:DNx] +def: "An interleukin-6 that is encoded in the genome of chicken." [OMA:Q90YI0, PRO:DNx] comment: Category=organism-gene. synonym: "chick-IL6" EXACT PRO-short-label [PRO:DNx] synonym: "ChIL-6 (chicken)" EXACT [UniProtKB:Q90YI0] @@ -263816,6 +264741,24 @@ intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/395337 ! IL6 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: PR:Q90YI1 +name: ovocalyxin-32 (chicken) +namespace: protein +def: "A retinoic acid receptor responder protein 1 that is encoded in the genome of chicken." [OMA:Q90YI1, PRO:DNx] +comment: Category=organism-gene. +synonym: "32 kDa eggshell matrix protein (chicken)" EXACT [UniProtKB:Q90YI1] +synonym: "chick-RARRES1" EXACT PRO-short-label [PRO:DNx] +synonym: "OCX-32 (chicken)" EXACT [UniProtKB:Q90YI1] +synonym: "RARRES1" RELATED Gene-based [UniProtKB:Q90YI1] +xref: UniProtKB:Q90YI1 +is_a: PR:000013739 ! retinoic acid receptor responder protein 1 +is_a: PR:000029063 ! Gallus gallus protein +intersection_of: PR:000013739 ! retinoic acid receptor responder protein 1 +intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus +relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=7304 ! RARRES1 (chicken) +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: PR:Q90ZN1 name: anti-apoptotic protein NR13 (chicken) @@ -263837,7 +264780,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q91035 name: sonic hedgehog protein (chicken) namespace: protein -def: "A sonic hedgehog protein that is encoded in the genome of chicken." [PANTHER:PTHR11889\:SF16, PRO:DNx] +def: "A sonic hedgehog protein that is encoded in the genome of chicken." [OMA:Q91035, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SHH" EXACT PRO-short-label [PRO:DNx] synonym: "SHH" RELATED Gene-based [UniProtKB:Q91035] @@ -263855,7 +264798,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q91044 name: NT-3 growth factor receptor (chicken) namespace: protein -def: "An NT-3 growth factor receptor that is encoded in the genome of chicken." [OMA:Q91044, PANTHER:PTHR24416\:SF284, PRO:DNx] +def: "An NT-3 growth factor receptor that is encoded in the genome of chicken." [OMA:Q91044, PRO:DNx] comment: Category=organism-gene. synonym: "chick-NTRK3" EXACT PRO-short-label [PRO:DNx] synonym: "neurotrophic tyrosine kinase receptor type 3 (chicken)" EXACT [UniProtKB:Q91044] @@ -263875,7 +264818,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q91048 name: inactive tyrosine-protein kinase 7 (chicken) namespace: protein -def: "An inactive tyrosine-protein kinase 7 that is encoded in the genome of chicken." [PANTHER:PTHR24418\:SF281, PRO:DNx] +def: "An inactive tyrosine-protein kinase 7 that is encoded in the genome of chicken." [OMA:Q91048, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PTK7" EXACT PRO-short-label [PRO:DNx] synonym: "kinase-like protein (chicken)" EXACT [UniProtKB:Q91048] @@ -263916,7 +264859,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q91987 name: BDNF/NT-3 growth factors receptor (chicken) namespace: protein -def: "A BDNF/NT-3 growth factors receptor that is encoded in the genome of chicken." [OMA:Q91987, PANTHER:PTHR24416\:SF336, PRO:DNx] +def: "A BDNF/NT-3 growth factors receptor that is encoded in the genome of chicken." [OMA:Q91987, PRO:DNx] comment: Category=organism-gene. synonym: "chick-NTRK2" EXACT PRO-short-label [PRO:DNx] synonym: "neurotrophic tyrosine kinase receptor type 2 (chicken)" EXACT [UniProtKB:Q91987] @@ -265035,6 +265978,7 @@ namespace: protein def: "A CDGSH iron-sulfur domain-containing protein 1 that is encoded in the genome of mouse." [OMA:Q91WS0, PRO:DNx] comment: Category=organism-gene. synonym: "Cisd1" RELATED Gene-based [UniProtKB:Q91WS0] +synonym: "cysteine transaminase CISD1 (mouse)" EXACT [UniProtKB:Q91WS0] synonym: "D10Ertd214e" RELATED Gene-based [UniProtKB:Q91WS0] synonym: "mCISD1" EXACT PRO-short-label [PRO:DNx] synonym: "MitoNEET (mouse)" EXACT [UniProtKB:Q91WS0] @@ -265140,20 +266084,23 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q91WV7 -name: neutral and basic amino acid transport protein rBAT (mouse) +name: amino acid transporter heavy chain SLC3A1 (mouse) namespace: protein -def: "A neutral and basic amino acid transport protein rBAT that is encoded in the genome of mouse." [OMA:Q91WV7, PANTHER:PTHR10357\:SF73, PRO:DNx] +def: "An amino acid transporter heavy chain SLC3A1 that is encoded in the genome of mouse." [OMA:Q91WV7, PRO:DNx] comment: Category=organism-gene. -synonym: "b(0,+)-type amino acid transport protein (mouse)" EXACT [UniProtKB:Q91WV7] +synonym: "b(0,+)-type amino acid transporter-related heavy chain (mouse)" EXACT [UniProtKB:Q91WV7] +synonym: "D2 (mouse)" EXACT [UniProtKB:Q91WV7] synonym: "mSLC3A1" EXACT PRO-short-label [PRO:DNx] synonym: "Nbat" RELATED Gene-based [UniProtKB:Q91WV7] synonym: "NBAT (mouse)" EXACT [UniProtKB:Q91WV7] +synonym: "neutral and basic amino acid transport protein (mouse)" EXACT [UniProtKB:Q91WV7] +synonym: "rBAT (mouse)" EXACT [UniProtKB:Q91WV7] synonym: "Slc3a1" RELATED Gene-based [UniProtKB:Q91WV7] synonym: "solute carrier family 3 member 1 (mouse)" EXACT [UniProtKB:Q91WV7] xref: UniProtKB:Q91WV7 -is_a: PR:000015137 ! neutral and basic amino acid transport protein rBAT +is_a: PR:000015137 ! amino acid transporter heavy chain SLC3A1 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000015137 ! neutral and basic amino acid transport protein rBAT +intersection_of: PR:000015137 ! amino acid transporter heavy chain SLC3A1 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1195264 ! Slc3a1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -265880,7 +266827,10 @@ namespace: protein def: "A UDP-N-acetylhexosamine pyrophosphorylase that is encoded in the genome of mouse." [OMA:Q91YN5, PRO:DNx] comment: Category=organism-gene. synonym: "mUAP1" EXACT PRO-short-label [PRO:DNx] +synonym: "protein-pyrophosphorylation enzyme (mouse)" EXACT [UniProtKB:Q91YN5] synonym: "Uap1" RELATED Gene-based [UniProtKB:Q91YN5] +synonym: "UDP-N-acetylgalactosamine pyrophosphorylase (mouse)" EXACT [UniProtKB:Q91YN5] +synonym: "UDP-N-acetylglucosamine pyrophosphorylase (mouse)" EXACT [UniProtKB:Q91YN5] xref: UniProtKB:Q91YN5 is_a: PR:000016948 ! UDP-N-acetylhexosamine pyrophosphorylase is_a: PR:000029032 ! Mus musculus protein @@ -266566,7 +267516,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q92172 name: transcription factor VBP (chicken) namespace: protein -def: "A thyrotroph embryonic factor that is encoded in the genome of chicken." [OMA:Q92172, PANTHER:PTHR11988\:SF6, PRO:DNx] +def: "A thyrotroph embryonic factor that is encoded in the genome of chicken." [OMA:Q92172, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TEF" EXACT PRO-short-label [PRO:DNx] synonym: "TEF" RELATED Gene-based [UniProtKB:Q92172] @@ -266585,7 +267535,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q92178 name: calpain-2 catalytic subunit (chicken) namespace: protein -def: "A calpain-2 catalytic subunit that is encoded in the genome of chicken." [PANTHER:PTHR10183\:SF52, PRO:DNx] +def: "A calpain-2 catalytic subunit that is encoded in the genome of chicken." [OMA:Q92178, PRO:DNx] comment: Category=organism-gene. synonym: "calcium-activated neutral proteinase 2 (chicken)" EXACT [UniProtKB:Q92178] synonym: "calpain M-type (chicken)" EXACT [UniProtKB:Q92178] @@ -266607,7 +267557,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q92179 name: carbohydrate sulfotransferase 3 (chicken) namespace: protein -def: "A carbohydrate sulfotransferase 3 that is encoded in the genome of chicken." [PANTHER:PTHR10704\:SF2, PRO:DNx] +def: "A carbohydrate sulfotransferase 3 that is encoded in the genome of chicken." [OMA:Q92179, PRO:DNx] comment: Category=organism-gene. synonym: "C6ST (chicken)" EXACT [UniProtKB:Q92179] synonym: "C6ST-1 (chicken)" EXACT [UniProtKB:Q92179] @@ -266627,7 +267577,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q92182 name: beta-galactoside alpha-2,6-sialyltransferase 1 (chicken) namespace: protein -def: "A beta-galactoside alpha-2,6-sialyltransferase 1 that is encoded in the genome of chicken." [PANTHER:PTHR13713\:SF9, PRO:DNx] +def: "A beta-galactoside alpha-2,6-sialyltransferase 1 that is encoded in the genome of chicken." [OMA:Q92182, PRO:DNx] comment: Category=organism-gene. synonym: "alpha 2,6-ST 1 (chicken)" EXACT [UniProtKB:Q92182] synonym: "chick-ST6GAL1" EXACT PRO-short-label [PRO:DNx] @@ -266671,7 +267621,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q92184 name: alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 (chicken) namespace: protein -def: "An alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 that is encoded in the genome of chicken." [PANTHER:PTHR13713\:SF2, PRO:DNx] +def: "An alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 that is encoded in the genome of chicken." [OMA:Q92184, PRO:DNx] comment: Category=organism-gene. synonym: "chick-ST6GALNAC2" EXACT PRO-short-label [PRO:DNx] synonym: "gal-beta-1,3-GalNAc alpha-2,6-sialyltransferase (chicken)" EXACT [UniProtKB:Q92184] @@ -267406,7 +268356,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q923L3 name: CUB and sushi domain-containing protein 1 (mouse) namespace: protein -def: "A CUB and sushi domain-containing protein 1 that is encoded in the genome of mouse." [OMA:Q923L3, PANTHER:PTHR19325\:SF44, PRO:DNx] +def: "A CUB and sushi domain-containing protein 1 that is encoded in the genome of mouse." [OMA:Q923L3, PRO:DNx] comment: Category=organism-gene. synonym: "Csmd1" RELATED Gene-based [UniProtKB:Q923L3] synonym: "CUB and sushi multiple domains protein 1 (mouse)" EXACT [UniProtKB:Q923L3] @@ -267423,7 +268373,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q923P0 name: collagen alpha-1(XX) chain (mouse) namespace: protein -def: "A collagen alpha-1(XX) chain that is encoded in the genome of mouse." [OMA:Q923P0, PANTHER:PTHR24023\:SF50, PRO:DNx] +def: "A collagen alpha-1(XX) chain that is encoded in the genome of mouse." [OMA:Q923P0, PRO:DNx] comment: Category=organism-gene. synonym: "Col20a1" RELATED Gene-based [UniProtKB:Q923P0] synonym: "mCOL20A1" EXACT PRO-short-label [PRO:DNx] @@ -268244,6 +269194,7 @@ synonym: "NPIPB3" RELATED Gene-based [UniProtKB:Q92617] synonym: "NPIPL3" RELATED Gene-based [UniProtKB:Q92617] synonym: "nuclear pore complex-interacting protein-like 3 (human)" EXACT [] synonym: "protein pps22-1 (human)" EXACT [UniProtKB:Q92617] +xref: Reactome:R-HSA-9731050 "PR:Q92617 located_in GO:0005635" xref: UniProtKB:Q92617 is_a: PR:000029067 ! Homo sapiens protein is_a: PR:000031080 ! nuclear pore complex-interacting protein family member B3 @@ -268550,6 +269501,7 @@ synonym: "hCREBBP" EXACT PRO-short-label [PRO:DNx] synonym: "histone lysine acetyltransferase CREBBP (human)" EXACT [UniProtKB:Q92793] synonym: "protein-lysine acetyltransferase CREBBP (human)" EXACT [UniProtKB:Q92793] xref: Reactome:R-HSA-193545 "PR:Q92793 located_in GO:0005654" +xref: Reactome:R-HSA-9756493 "PR:Q92793 located_in GO:0005829" xref: UniProtKB:Q92793 is_a: PR:000000090 ! CREB-binding protein is_a: PR:000027108 ! transcription adapter with TAZ, KIX and bromo-domains (human) @@ -268989,6 +269941,7 @@ synonym: "ubiquitin fusion degradation protein 1 (human)" EXACT [UniProtKB:Q9289 synonym: "UFD1" RELATED Gene-based [UniProtKB:Q92890] synonym: "UFD1L" RELATED Gene-based [UniProtKB:Q92890] xref: Reactome:R-HSA-5654993 "PR:Q92890 located_in GO:0005654" +xref: Reactome:R-HSA-9668519 "PR:Q92890 located_in GO:0005829" xref: UniProtKB:Q92890 is_a: PR:000017040 ! ubiquitin recognition factor in ER-associated degradation protein 1 is_a: PR:000029067 ! Homo sapiens protein @@ -269293,6 +270246,7 @@ synonym: "SCG10" RELATED Gene-based [UniProtKB:Q93045] synonym: "SCGN10" RELATED Gene-based [UniProtKB:Q93045] synonym: "STMN2" RELATED Gene-based [UniProtKB:Q93045] synonym: "superior cervical ganglion-10 protein (human)" EXACT [UniProtKB:Q93045] +xref: Reactome:R-HSA-9696513 "PR:Q93045 located_in GO:0005829" xref: UniProtKB:Q93045 is_a: PR:000015760 ! stathmin-2 is_a: PR:000029067 ! Homo sapiens protein @@ -270258,9 +271212,9 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q96AW1 -name: vesicular, overexpressed in cancer, prosurvival protein 1 (human) +name: WW domain binding protein VOPP1 (human) namespace: protein -def: "A vesicular, overexpressed in cancer, prosurvival protein 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q96AW1] +def: "A WW domain binding protein VOPP1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q96AW1] comment: Category=organism-gene. synonym: "ECOP" RELATED Gene-based [UniProtKB:Q96AW1] synonym: "EGFR-coamplified and overexpressed protein (human)" EXACT [UniProtKB:Q96AW1] @@ -270268,11 +271222,12 @@ synonym: "GASP" RELATED Gene-based [UniProtKB:Q96AW1] synonym: "glioblastoma-amplified secreted protein (human)" EXACT [UniProtKB:Q96AW1] synonym: "hVOPP1" EXACT PRO-short-label [PRO:DNx] synonym: "putative NF-kappa-B-activating protein 055N (human)" EXACT [UniProtKB:Q96AW1] +synonym: "vesicular, overexpressed in cancer, prosurvival protein 1 (human)" EXACT [UniProtKB:Q96AW1] synonym: "VOPP1" RELATED Gene-based [UniProtKB:Q96AW1] xref: UniProtKB:Q96AW1 -is_a: PR:000006882 ! vesicular, overexpressed in cancer, prosurvival protein 1 +is_a: PR:000006882 ! WW domain binding protein VOPP1 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000006882 ! vesicular, overexpressed in cancer, prosurvival protein 1 +intersection_of: PR:000006882 ! WW domain binding protein VOPP1 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -270483,7 +271438,7 @@ def: "An E3 ubiquitin-protein ligase RNF25 that is encoded in the genome of huma comment: Category=organism-gene. synonym: "hRNF25" EXACT PRO-short-label [PRO:DNx] synonym: "RING finger protein 25 (human)" EXACT [UniProtKB:Q96BH1] -synonym: "RING-type E3 ubiquitin transferase RNF25 (human)" EXACT [UniProtKB:Q96BH1] +synonym: "RING finger protein AO7 (human)" EXACT [UniProtKB:Q96BH1] synonym: "RNF25" RELATED Gene-based [UniProtKB:Q96BH1] xref: Reactome:R-HSA-975976 "PR:Q96BH1 located_in GO:0005829" xref: UniProtKB:Q96BH1 @@ -270909,7 +271864,6 @@ synonym: "ETEA" RELATED Gene-based [UniProtKB:Q96CS3] synonym: "FAF2" RELATED Gene-based [UniProtKB:Q96CS3] synonym: "hFAF2" EXACT PRO-short-label [PRO:DNx] synonym: "KIAA0887" RELATED Gene-based [UniProtKB:Q96CS3] -synonym: "protein ETEA (human)" EXACT [UniProtKB:Q96CS3] synonym: "UBX domain-containing protein 3B (human)" EXACT [UniProtKB:Q96CS3] synonym: "UBX domain-containing protein 8 (human)" RELATED [UniProtKB:Q96CS3] synonym: "UBXD8" RELATED Gene-based [UniProtKB:Q96CS3] @@ -271148,6 +272102,7 @@ comment: Category=organism-gene. synonym: "hMSI2" EXACT PRO-short-label [PRO:DNx] synonym: "MSI2" RELATED Gene-based [UniProtKB:Q96DH6] synonym: "musashi-2 (human)" EXACT [UniProtKB:Q96DH6] +xref: Reactome:R-HSA-9715155 "PR:Q96DH6 located_in GO:0005829" xref: UniProtKB:Q96DH6 is_a: PR:000010672 ! RNA-binding protein Musashi homolog 2 is_a: PR:000029067 ! Homo sapiens protein @@ -271299,20 +272254,20 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q96DV4 -name: 39S ribosomal protein L38, mitochondrial (human) +name: large ribosomal subunit protein mL38 (human) namespace: protein -def: "A 39S ribosomal protein L38, mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q96DV4] +def: "A large ribosomal subunit protein mL38 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q96DV4] comment: Category=organism-gene. +synonym: "39S ribosomal protein L38, mitochondrial (human)" EXACT [UniProtKB:Q96DV4] synonym: "hMRPL38" EXACT PRO-short-label [PRO:DNx] synonym: "HSPC262" RELATED Gene-based [UniProtKB:Q96DV4] synonym: "L38mt (human)" EXACT [UniProtKB:Q96DV4] -synonym: "mitochondrial large ribosomal subunit protein mL38 (human)" EXACT [UniProtKB:Q96DV4] synonym: "MRP-L38 (human)" EXACT [UniProtKB:Q96DV4] synonym: "MRPL38" RELATED Gene-based [UniProtKB:Q96DV4] xref: UniProtKB:Q96DV4 -is_a: PR:000010598 ! 39S ribosomal protein L38, mitochondrial +is_a: PR:000010598 ! large ribosomal subunit protein mL38 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000010598 ! 39S ribosomal protein L38, mitochondrial +intersection_of: PR:000010598 ! large ribosomal subunit protein mL38 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -271417,6 +272372,7 @@ def: "A ribosome-recycling factor, mitochondrial that is encoded in the genome o comment: Category=organism-gene. synonym: "hMRRF" EXACT PRO-short-label [PRO:DNx] synonym: "MRRF" RELATED Gene-based [UniProtKB:Q96E11] +synonym: "mtRRF (human)" EXACT [UniProtKB:Q96E11] synonym: "ribosome-releasing factor, mitochondrial (human)" EXACT [UniProtKB:Q96E11] synonym: "RRF (human)" EXACT [UniProtKB:Q96E11] xref: UniProtKB:Q96E11 @@ -272632,13 +273588,13 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q96I59 -name: probable asparagine--tRNA ligase, mitochondrial (human) +name: asparaginyl-tRNA synthetase (human) namespace: protein def: "An asparagine--tRNA ligase, mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q96I59] comment: Category=organism-gene. synonym: "AsnRS (human)" BROAD [PRO:DAN] synonym: "asparagine--tRNA ligase (human)" BROAD [PRO:DAN] -synonym: "asparaginyl-tRNA synthetase (human)" BROAD [PRO:DAN] +synonym: "asparagine--tRNA ligase, mitochondrial (human)" EXACT [UniProtKB:Q96I59] synonym: "asparaginyl-tRNA synthetase, mitochondrial (human)" EXACT [PRO:DAN] synonym: "hNARS2" EXACT PRO-short-label [PRO:DNx] synonym: "NARS2" RELATED Gene-based [UniProtKB:Q96I59] @@ -274161,6 +275117,7 @@ def: "A coiled-coil domain-containing protein 115 that is encoded in the genome comment: Category=organism-gene. synonym: "CCDC115" RELATED Gene-based [UniProtKB:Q96NT0] synonym: "hCCDC115" EXACT PRO-short-label [PRO:DNx] +xref: Reactome:R-HSA-9714329 "PR:Q96NT0 located_in GO:0005789" xref: UniProtKB:Q96NT0 is_a: PR:000029067 ! Homo sapiens protein is_a: PR:000032237 ! coiled-coil domain-containing protein 115 @@ -275137,7 +276094,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q98917 name: melanocyte protein PMEL (chicken) namespace: protein -def: "A melanocyte protein Pmel 17 that is encoded in the genome of chicken." [PANTHER:PTHR11861\:SF1, PRO:DNx] +def: "A melanocyte protein Pmel 17 that is encoded in the genome of chicken." [OMA:Q98917, PRO:DNx] comment: Category=organism-gene. synonym: "115 kDa melanosomal matrix protein (chicken)" EXACT [UniProtKB:Q98917] synonym: "chick-PMEL" EXACT PRO-short-label [PRO:DNx] @@ -275160,7 +276117,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q98919 name: limbic system-associated membrane protein (chicken) namespace: protein -def: "A limbic system-associated membrane protein that is encoded in the genome of chicken." [OMA:Q98919, PANTHER:PTHR19831\:SF10, PRO:DNx] +def: "A limbic system-associated membrane protein that is encoded in the genome of chicken." [OMA:Q98919, PRO:DNx] comment: Category=organism-gene. synonym: "chick-LSAMP" EXACT PRO-short-label [PRO:DNx] synonym: "CHLAMP G19-isoform (chicken)" EXACT [UniProtKB:Q98919] @@ -275178,7 +276135,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q98925 name: interferon regulatory factor 2 (chicken) namespace: protein -def: "An interferon regulatory factor 2 that is encoded in the genome of chicken." [OMA:Q98925, PANTHER:PTHR11949\:SF3, PRO:DNx] +def: "An interferon regulatory factor 2 that is encoded in the genome of chicken." [OMA:Q98925, PRO:DNx] comment: Category=organism-gene. synonym: "chick-IRF2" EXACT PRO-short-label [PRO:DNx] synonym: "IRF-2 (chicken)" EXACT [UniProtKB:Q98925] @@ -275212,7 +276169,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q98938 name: Indian hedgehog protein (chicken) namespace: protein -def: "An Indian hedgehog protein that is encoded in the genome of chicken." [OMA:Q98938, PANTHER:PTHR11889\:SF17, PRO:DNx] +def: "An Indian hedgehog protein that is encoded in the genome of chicken." [OMA:Q98938, PRO:DNx] comment: Category=organism-gene. synonym: "chick-IHH" EXACT PRO-short-label [PRO:DNx] synonym: "IHH" RELATED Gene-based [UniProtKB:Q98938] @@ -275243,7 +276200,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q98SH3 name: proteasomal ubiquitin receptor ADRM1 (chicken) namespace: protein -def: "A proteasomal ubiquitin receptor ADRM1 that is encoded in the genome of chicken." [OMA:Q98SH3, PANTHER:PTHR12225\:SF0, PRO:DNx] +def: "A proteasomal ubiquitin receptor ADRM1 that is encoded in the genome of chicken." [OMA:Q98SH3, PRO:DNx] comment: Category=organism-gene. synonym: "adhesion-regulating molecule 1 (chicken)" EXACT [UniProtKB:Q98SH3] synonym: "ADRM1" RELATED Gene-based [UniProtKB:Q98SH3] @@ -275261,7 +276218,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q98ST6 name: peptidase inhibitor 15 (chicken) namespace: protein -def: "A peptidase inhibitor 15 that is encoded in the genome of chicken." [OMA:Q98ST6, PANTHER:PTHR10334\:SF63, PRO:DNx] +def: "A peptidase inhibitor 15 that is encoded in the genome of chicken." [OMA:Q98ST6, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PI15" EXACT PRO-short-label [PRO:DNx] synonym: "PI15" RELATED Gene-based [UniProtKB:Q98ST6] @@ -275293,7 +276250,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q98T89 name: twisted gastrulation protein homolog 1 (chicken) namespace: protein -def: "A twisted gastrulation protein homolog 1 that is encoded in the genome of chicken." [OMA:Q98T89, PANTHER:PTHR12312\:SF1, PRO:DNx] +def: "A twisted gastrulation protein homolog 1 that is encoded in the genome of chicken." [OMA:Q98T89, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TWSG1" EXACT PRO-short-label [PRO:DNx] synonym: "TSG" RELATED Gene-based [UniProtKB:Q98T89] @@ -275310,7 +276267,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q98TX3 name: programmed cell death protein 4 (chicken) namespace: protein -def: "A programmed cell death protein 4 that is encoded in the genome of chicken." [OMA:Q98TX3, PANTHER:PTHR12626\:SF0, PRO:DNx] +def: "A programmed cell death protein 4 that is encoded in the genome of chicken." [OMA:Q98TX3, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PDCD4" EXACT PRO-short-label [PRO:DNx] synonym: "PDCD4" RELATED Gene-based [UniProtKB:Q98TX3] @@ -276331,6 +277288,7 @@ synonym: "mesenchyme fork head protein 1 (human)" EXACT [UniProtKB:Q99958] synonym: "MFH-1 protein (human)" EXACT [UniProtKB:Q99958] synonym: "MFH1" RELATED Gene-based [UniProtKB:Q99958] synonym: "transcription factor FKH-14 (human)" EXACT [UniProtKB:Q99958] +xref: Reactome:R-HSA-3927898 "PR:Q99958 located_in GO:0005654" xref: UniProtKB:Q99958 is_a: PR:000007608 ! forkhead box protein C2 is_a: PR:000029067 ! Homo sapiens protein @@ -276619,7 +277577,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q99J77 name: sialic acid synthase (mouse) namespace: protein -def: "A sialic acid synthase that is encoded in the genome of mouse." [OMA:Q99J77, PANTHER:PTHR23416\:SF1, PRO:DNx] +def: "A sialic acid synthase that is encoded in the genome of mouse." [OMA:Q99J77, PRO:DNx] comment: Category=organism-gene. synonym: "mNANS" EXACT PRO-short-label [PRO:DNx] synonym: "N-acetylneuraminate-9-phosphate synthase (mouse)" EXACT [UniProtKB:Q99J77] @@ -276656,7 +277614,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q99J85 name: neuronal pentraxin receptor (mouse) namespace: protein -def: "A neuronal pentraxin receptor that is encoded in the genome of mouse." [OMA:Q99J85, PRO:DNx] +def: "A neuronal pentraxin receptor that is encoded in the genome of mouse." [PRO:DNx] comment: Category=organism-gene. synonym: "mNPTXR" EXACT PRO-short-label [PRO:DNx] synonym: "Npr" RELATED Gene-based [UniProtKB:Q99J85] @@ -276824,10 +277782,10 @@ name: calsyntenin-3 (mouse) namespace: protein def: "A calsyntenin-3 that is encoded in the genome of mouse." [OMA:Q99JH7, PRO:DNx] comment: Category=organism-gene. -synonym: "Alc-beta (mouse)" EXACT [UniProtKB:Q99JH7] synonym: "alcadein-beta (mouse)" EXACT [UniProtKB:Q99JH7] synonym: "Clstn3" RELATED Gene-based [UniProtKB:Q99JH7] synonym: "Cs3" RELATED Gene-based [UniProtKB:Q99JH7] +synonym: "Cst-3 (mouse)" EXACT [UniProtKB:Q99JH7] synonym: "Cstn3" RELATED Gene-based [UniProtKB:Q99JH7] synonym: "mCLSTN3" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:Q99JH7 @@ -277556,7 +278514,7 @@ name: eukaryotic translation initiation factor 2 subunit 2 (mouse) namespace: protein def: "A eukaryotic translation initiation factor 2 subunit 2 that is encoded in the genome of mouse." [OMA:Q99L45, PRO:DNx] comment: Category=organism-gene. -synonym: "eIF-2-beta (mouse)" EXACT [UniProtKB:Q99L45] +synonym: "eIF2-beta (mouse)" EXACT [UniProtKB:Q99L45] synonym: "Eif2s2" RELATED Gene-based [UniProtKB:Q99L45] synonym: "eukaryotic translation initiation factor 2 subunit beta (mouse)" EXACT [UniProtKB:Q99L45] synonym: "mEIF2S2" EXACT PRO-short-label [PRO:DNx] @@ -277710,17 +278668,17 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q99LC8 -name: translation initiation factor eIF-2B subunit alpha (mouse) +name: translation initiation factor eIF2B subunit alpha (mouse) namespace: protein -def: "A translation initiation factor eIF-2B subunit alpha that is encoded in the genome of mouse." [OMA:Q99LC8, PRO:DNx] +def: "A translation initiation factor eIF2B subunit alpha that is encoded in the genome of mouse." [OMA:Q99LC8, PRO:DNx] comment: Category=organism-gene. -synonym: "eIF-2B GDP-GTP exchange factor subunit alpha (mouse)" EXACT [UniProtKB:Q99LC8] +synonym: "eIF2B GDP-GTP exchange factor subunit alpha (mouse)" EXACT [UniProtKB:Q99LC8] synonym: "Eif2b1" RELATED Gene-based [UniProtKB:Q99LC8] synonym: "mEIF2B1" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:Q99LC8 -is_a: PR:000006962 ! translation initiation factor eIF-2B subunit alpha +is_a: PR:000006962 ! translation initiation factor eIF2B subunit alpha is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000006962 ! translation initiation factor eIF-2B subunit alpha +intersection_of: PR:000006962 ! translation initiation factor eIF2B subunit alpha intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2384802 ! Eif2b1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -278236,7 +279194,7 @@ is_a: PR:000009241 ! eukaryotic-type lysine--tRNA ligase is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000009241 ! eukaryotic-type lysine--tRNA ligase intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1934754 ! Kars (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1934754 ! Kars1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -278526,36 +279484,38 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q99N91 -name: 39S ribosomal protein L34, mitochondrial (mouse) +name: large ribosomal subunit protein bL34m (mouse) namespace: protein -def: "A 39S ribosomal protein L34, mitochondrial that is encoded in the genome of mouse." [OMA:Q99N91, PRO:DAN] +def: "A large ribosomal subunit protein bL34m that is encoded in the genome of mouse." [OMA:Q99N91, PRO:DAN] comment: Category=organism-gene. +synonym: "39S ribosomal protein L34, mitochondrial (mouse)" EXACT [UniProtKB:Q99N91] synonym: "L34mt (mouse)" EXACT [UniProtKB:Q99N91] synonym: "mMRPL34" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-L34 (mouse)" EXACT [UniProtKB:Q99N91] synonym: "Mrpl34" RELATED Gene-based [UniProtKB:Q99N91] xref: UniProtKB:Q99N91 -is_a: PR:000010594 ! 39S ribosomal protein L34, mitochondrial +is_a: PR:000010594 ! large ribosomal subunit protein bL34m is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000010594 ! 39S ribosomal protein L34, mitochondrial +intersection_of: PR:000010594 ! large ribosomal subunit protein bL34m intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2137227 ! Mrpl34 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q99N96 -name: 39S ribosomal protein L1, mitochondrial (mouse) +name: large ribosomal subunit protein uL1m (mouse) namespace: protein -def: "A 39S ribosomal protein L1, mitochondrial that is encoded in the genome of mouse." [OMA:Q99N96, PRO:DNx] +def: "A large ribosomal subunit protein uL1m that is encoded in the genome of mouse." [OMA:Q99N96, PRO:DNx] comment: Category=organism-gene. +synonym: "39S ribosomal protein L1, mitochondrial (mouse)" EXACT [UniProtKB:Q99N96] synonym: "L1mt (mouse)" EXACT [UniProtKB:Q99N96] synonym: "mMRPL1" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-L1 (mouse)" EXACT [UniProtKB:Q99N96] synonym: "Mrpl1" RELATED Gene-based [UniProtKB:Q99N96] xref: UniProtKB:Q99N96 -is_a: PR:000010571 ! 39S ribosomal protein L1, mitochondrial +is_a: PR:000010571 ! large ribosomal subunit protein uL1m is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000010571 ! 39S ribosomal protein L1, mitochondrial +intersection_of: PR:000010571 ! large ribosomal subunit protein uL1m intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2137202 ! Mrpl1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -279162,20 +280122,20 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q9BQ48 -name: 39S ribosomal protein L34, mitochondrial (human) +name: large ribosomal subunit protein bL34m (human) namespace: protein -def: "A 39S ribosomal protein L34, mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9BQ48] +def: "A large ribosomal subunit protein bL34m that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9BQ48] comment: Category=organism-gene. +synonym: "39S ribosomal protein L34, mitochondrial (human)" EXACT [UniProtKB:Q9BQ48] synonym: "hMRPL34" EXACT PRO-short-label [PRO:DNx] synonym: "L34mt (human)" EXACT [UniProtKB:Q9BQ48] -synonym: "mitochondrial large ribosomal subunit protein bL34m (human)" EXACT [UniProtKB:Q9BQ48] synonym: "MRP-L34 (human)" EXACT [UniProtKB:Q9BQ48] synonym: "MRPL34" RELATED Gene-based [UniProtKB:Q9BQ48] xref: Reactome:R-HSA-5368205 "PR:Q9BQ48 located_in GO:0005743" xref: UniProtKB:Q9BQ48 -is_a: PR:000010594 ! 39S ribosomal protein L34, mitochondrial +is_a: PR:000010594 ! large ribosomal subunit protein bL34m is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000010594 ! 39S ribosomal protein L34, mitochondrial +intersection_of: PR:000010594 ! large ribosomal subunit protein bL34m intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -279698,7 +280658,9 @@ def: "A protein pelota that is encoded in the genome of human." [PRO:DNx, UniPro comment: Category=organism-gene. synonym: "CGI-17" RELATED Gene-based [UniProtKB:Q9BRX2] synonym: "hPELO" EXACT PRO-short-label [PRO:DNx] +synonym: "hPelota" EXACT [UniProtKB:Q9BRX2] synonym: "PELO" RELATED Gene-based [UniProtKB:Q9BRX2] +synonym: "protein Dom34 homolog (human)" EXACT [UniProtKB:Q9BRX2] xref: UniProtKB:Q9BRX2 is_a: PR:000012541 ! protein pelota is_a: PR:000029067 ! Homo sapiens protein @@ -279827,7 +280789,6 @@ name: ubiquitin-associated domain-containing protein 1 (human) namespace: protein def: "A ubiquitin-associated domain-containing protein 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9BSL1] comment: Category=organism-gene. -synonym: "E3 ubiquitin-protein ligase subunit KPC2 (human)" EXACT [UniProtKB:Q9BSL1] synonym: "GBDR1" RELATED Gene-based [UniProtKB:Q9BSL1] synonym: "glialblastoma cell differentiation-related protein 1 (human)" EXACT [UniProtKB:Q9BSL1] synonym: "hUBAC1" EXACT PRO-short-label [PRO:DNx] @@ -281090,6 +282051,7 @@ synonym: "CCDC94" RELATED Gene-based [UniProtKB:Q9BW85] synonym: "coiled-coil domain-containing protein 94 (human)" EXACT [UniProtKB:Q9BW85] synonym: "hYJU2" EXACT PRO-short-label [PRO:DNx] synonym: "YJU2" RELATED Gene-based [UniProtKB:Q9BW85] +xref: Reactome:R-HSA-9770430 "PR:Q9BW85 located_in GO:0005654" xref: UniProtKB:Q9BW85 is_a: PR:000029067 ! Homo sapiens protein is_a: PR:000029344 ! splicing factor YJU2 @@ -281458,6 +282420,7 @@ synonym: "ORP11" RELATED Gene-based [UniProtKB:Q9BXB4] synonym: "OSBP-related protein 11 (human)" EXACT [UniProtKB:Q9BXB4] synonym: "OSBP12" RELATED Gene-based [UniProtKB:Q9BXB4] synonym: "OSBPL11" RELATED Gene-based [UniProtKB:Q9BXB4] +xref: Reactome:R-HSA-9714667 "PR:Q9BXB4 located_in GO:0005886" xref: UniProtKB:Q9BXB4 is_a: PR:000012046 ! oxysterol-binding protein-related protein 11 is_a: PR:000029067 ! Homo sapiens protein @@ -282057,40 +283020,40 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q9BYC8 -name: 39S ribosomal protein L32, mitochondrial (human) +name: large ribosomal subunit protein bL32m (human) namespace: protein -def: "A 39S ribosomal protein L32, mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9BYC8] +def: "A large ribosomal subunit protein bL32m that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9BYC8] comment: Category=organism-gene. +synonym: "39S ribosomal protein L32, mitochondrial (human)" EXACT [UniProtKB:Q9BYC8] synonym: "hMRPL32" EXACT PRO-short-label [PRO:DNx] synonym: "HSPC283" RELATED Gene-based [UniProtKB:Q9BYC8] synonym: "L32mt (human)" BROAD [UniProtKB:Q9BYC8] -synonym: "mitochondrial large ribosomal subunit protein bL32m (human)" EXACT [UniProtKB:Q9BYC8] synonym: "MRP-L32 (human)" BROAD [UniProtKB:Q9BYC8] synonym: "MRPL32" RELATED Gene-based [UniProtKB:Q9BYC8] xref: Reactome:R-HSA-5368195 "PR:Q9BYC8 located_in GO:0005743" xref: UniProtKB:Q9BYC8 -is_a: PR:000010592 ! 39S ribosomal protein L32, mitochondrial +is_a: PR:000010592 ! large ribosomal subunit protein bL32m is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000010592 ! 39S ribosomal protein L32, mitochondrial +intersection_of: PR:000010592 ! large ribosomal subunit protein bL32m intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q9BYD6 -name: 39S ribosomal protein L1, mitochondrial (human) +name: large ribosomal subunit protein uL1m (human) namespace: protein -def: "A 39S ribosomal protein L1, mitochondrial that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9BYD6] +def: "A large ribosomal subunit protein uL1m that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9BYD6] comment: Category=organism-gene. +synonym: "39S ribosomal protein L1, mitochondrial (human)" EXACT [UniProtKB:Q9BYD6] synonym: "BM-022" RELATED Gene-based [UniProtKB:Q9BYD6] synonym: "hMRPL1" EXACT PRO-short-label [PRO:DNx] synonym: "L1mt (human)" EXACT [UniProtKB:Q9BYD6] -synonym: "mitochondrial large ribosomal subunit protein uL1m (human)" EXACT [UniProtKB:Q9BYD6] synonym: "MRP-L1 (human)" EXACT [UniProtKB:Q9BYD6] synonym: "MRPL1" RELATED Gene-based [UniProtKB:Q9BYD6] xref: UniProtKB:Q9BYD6 -is_a: PR:000010571 ! 39S ribosomal protein L1, mitochondrial +is_a: PR:000010571 ! large ribosomal subunit protein uL1m is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000010571 ! 39S ribosomal protein L1, mitochondrial +intersection_of: PR:000010571 ! large ribosomal subunit protein uL1m intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -282122,6 +283085,7 @@ synonym: "hSRXN1" EXACT PRO-short-label [PRO:DNx] synonym: "SRX" RELATED Gene-based [UniProtKB:Q9BYN0] synonym: "SRX1" RELATED Gene-based [UniProtKB:Q9BYN0] synonym: "SRXN1" RELATED Gene-based [UniProtKB:Q9BYN0] +xref: Reactome:R-HSA-9759366 "PR:Q9BYN0 located_in GO:0005789" xref: UniProtKB:Q9BYN0 is_a: PR:000015642 ! sulfiredoxin-1 is_a: PR:000029067 ! Homo sapiens protein @@ -283344,7 +284308,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q9CQ73 name: plakophilin-2 (mouse) namespace: protein -def: "A plakophilin-2 that is encoded in the genome of mouse." [OMA:Q9CQ73, PANTHER:PTHR10372\:SF2, PRO:DNx] +def: "A plakophilin-2 that is encoded in the genome of mouse." [OMA:Q9CQ73, PRO:DNx] comment: Category=organism-gene. synonym: "mPKP2" EXACT PRO-short-label [PRO:DNx] synonym: "Pkp2" RELATED Gene-based [UniProtKB:Q9CQ73] @@ -283527,7 +284491,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q9CQB7 name: LYR motif-containing protein 1 (mouse) namespace: protein -def: "A LYR motif-containing protein 1 that is encoded in the genome of mouse." [OMA:Q9CQB7, PANTHER:PTHR14273\:SF0, PRO:DNx] +def: "A LYR motif-containing protein 1 that is encoded in the genome of mouse." [OMA:Q9CQB7, PRO:DNx] comment: Category=organism-gene. synonym: "Lyrm1" RELATED Gene-based [UniProtKB:Q9CQB7] synonym: "mLYRM1" EXACT PRO-short-label [PRO:DNx] @@ -283889,18 +284853,19 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9CQP0 -name: 39S ribosomal protein L33, mitochondrial (mouse) +name: large ribosomal subunit protein bL33m (mouse) namespace: protein -def: "A 39S ribosomal protein L33, mitochondrial that is encoded in the genome of mouse." [OMA:Q9CQP0, PRO:DNx] +def: "A large ribosomal subunit protein bL33m that is encoded in the genome of mouse." [OMA:Q9CQP0, PRO:DNx] comment: Category=organism-gene. +synonym: "39S ribosomal protein L33, mitochondrial (mouse)" EXACT [UniProtKB:Q9CQP0] synonym: "L33mt (mouse)" EXACT [UniProtKB:Q9CQP0] synonym: "mMRPL33" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-L33 (mouse)" EXACT [UniProtKB:Q9CQP0] synonym: "Mrpl33" RELATED Gene-based [UniProtKB:Q9CQP0] xref: UniProtKB:Q9CQP0 -is_a: PR:000010593 ! 39S ribosomal protein L33, mitochondrial +is_a: PR:000010593 ! large ribosomal subunit protein bL33m is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000010593 ! 39S ribosomal protein L33, mitochondrial +intersection_of: PR:000010593 ! large ribosomal subunit protein bL33m intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2137225 ! Mrpl33 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -284452,19 +285417,20 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9CR59 -name: growth arrest and DNA damage-inducible proteins-interacting protein 1 (mouse) +name: large ribosomal subunit protein mL64 (mouse) namespace: protein -def: "A growth arrest and DNA damage-inducible proteins-interacting protein 1 that is encoded in the genome of mouse." [OMA:Q9CR59, PRO:DNx] +def: "A large ribosomal subunit protein mL64 that is encoded in the genome of mouse." [OMA:Q9CR59, PRO:DNx] comment: Category=organism-gene. synonym: "39S ribosomal protein L59, mitochondrial (mouse)" EXACT [UniProtKB:Q9CR59] synonym: "Gadd45gip1" RELATED Gene-based [UniProtKB:Q9CR59] +synonym: "growth arrest and DNA damage-inducible proteins-interacting protein 1 (mouse)" EXACT [UniProtKB:Q9CR59] synonym: "mGADD45GIP1" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-L59 (mouse)" EXACT [UniProtKB:Q9CR59] synonym: "Mrpl59" RELATED Gene-based [UniProtKB:Q9CR59] xref: UniProtKB:Q9CR59 -is_a: PR:000007790 ! growth arrest and DNA damage-inducible proteins-interacting protein 1 +is_a: PR:000007790 ! large ribosomal subunit protein mL64 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000007790 ! growth arrest and DNA damage-inducible proteins-interacting protein 1 +intersection_of: PR:000007790 ! large ribosomal subunit protein mL64 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1914947 ! Gadd45gip1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -284549,18 +285515,19 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9CR88 -name: 28S ribosomal protein S14, mitochondrial (mouse) +name: small ribosomal subunit protein uS14m (mouse) namespace: protein -def: "A 28S ribosomal protein S14, mitochondrial that is encoded in the genome of mouse." [OMA:Q9CR88, PRO:DNx] +def: "A small ribosomal subunit protein uS14m that is encoded in the genome of mouse." [OMA:Q9CR88, PRO:DNx] comment: Category=organism-gene. +synonym: "28S ribosomal protein S14, mitochondrial (mouse)" EXACT [UniProtKB:Q9CR88] synonym: "mMRPS14" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-S14 (mouse)" EXACT [UniProtKB:Q9CR88] synonym: "Mrps14" RELATED Gene-based [UniProtKB:Q9CR88] synonym: "S14mt (mouse)" EXACT [UniProtKB:Q9CR88] xref: UniProtKB:Q9CR88 -is_a: PR:000010621 ! 28S ribosomal protein S14, mitochondrial +is_a: PR:000010621 ! small ribosomal subunit protein uS14m is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000010621 ! 28S ribosomal protein S14, mitochondrial +intersection_of: PR:000010621 ! small ribosomal subunit protein uS14m intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1928141 ! Mrps14 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -285586,6 +286553,7 @@ synonym: "DCUN1 domain-containing protein 5 (mouse)" EXACT [UniProtKB:Q9CXV9] synonym: "Dcun1d5" RELATED Gene-based [UniProtKB:Q9CXV9] synonym: "defective in cullin neddylation protein 1-like protein 5 (mouse)" EXACT [UniProtKB:Q9CXV9] synonym: "mDCUN1D5" EXACT PRO-short-label [PRO:DNx] +synonym: "SCCRO5" RELATED Gene-based [UniProtKB:Q9CXV9] synonym: "squamous cell carcinoma-related oncogene 5 (mouse)" EXACT [UniProtKB:Q9CXV9] xref: UniProtKB:Q9CXV9 is_a: PR:000006334 ! DCN1-like protein 5 @@ -285616,16 +286584,17 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9CXW4 -name: 60S ribosomal protein L11 (mouse) +name: large ribosomal subunit protein uL5 (mouse) namespace: protein -def: "A 60S ribosomal protein L11 that is encoded in the genome of mouse." [OMA:Q9CXW4, PRO:DNx] +def: "A eukaryotic-type large ribosomal subunit protein uL5 that is encoded in the genome of mouse." [OMA:Q9CXW4, PRO:DNx] comment: Category=organism-gene. +synonym: "60S ribosomal protein L11 (mouse)" EXACT [UniProtKB:Q9CXW4] synonym: "mRPL11" EXACT PRO-short-label [PRO:DNx] synonym: "Rpl11" RELATED Gene-based [UniProtKB:Q9CXW4] xref: UniProtKB:Q9CXW4 -is_a: PR:000014190 ! 60S ribosomal protein L11 +is_a: PR:000014190 ! eukaryotic-type large ribosomal subunit protein uL5 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000014190 ! 60S ribosomal protein L11 +intersection_of: PR:000014190 ! eukaryotic-type large ribosomal subunit protein uL5 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1914275 ! Rpl11 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -285867,7 +286836,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q9CYQ7 name: nuclear prelamin A recognition factor (mouse) namespace: protein -def: "A nuclear prelamin A recognition factor that is encoded in the genome of mouse." [PRO:DNx] +def: "A nuclear prelamin A recognition factor that is encoded in the genome of mouse." [OMA:Q9CYQ7, PRO:DNx] comment: Category=organism-gene. synonym: "IOP2 (mouse)" EXACT [UniProtKB:Q9CYQ7] synonym: "iron-only hydrogenase-like protein 2 (mouse)" EXACT [UniProtKB:Q9CYQ7] @@ -286009,18 +286978,19 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9CZ83 -name: 39S ribosomal protein L55, mitochondrial (mouse) +name: large ribosomal subunit protein mL55 (mouse) namespace: protein -def: "A 39S ribosomal protein L55, mitochondrial that is encoded in the genome of mouse." [OMA:Q9CZ83, PRO:DNx] +def: "A large ribosomal subunit protein mL55 that is encoded in the genome of mouse." [OMA:Q9CZ83, PRO:DNx] comment: Category=organism-gene. +synonym: "39S ribosomal protein L55, mitochondrial (mouse)" EXACT [UniProtKB:Q9CZ83] synonym: "L55mt (mouse)" EXACT [UniProtKB:Q9CZ83] synonym: "mMRPL55" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-L55 (mouse)" EXACT [UniProtKB:Q9CZ83] synonym: "Mrpl55" RELATED Gene-based [UniProtKB:Q9CZ83] xref: UniProtKB:Q9CZ83 -is_a: PR:000010616 ! 39S ribosomal protein L55, mitochondrial +is_a: PR:000010616 ! large ribosomal subunit protein mL55 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000010616 ! 39S ribosomal protein L55, mitochondrial +intersection_of: PR:000010616 ! large ribosomal subunit protein mL55 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1914462 ! Mrpl55 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -286285,7 +287255,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q9CZN7 name: serine hydroxymethyltransferase, mitochondrial (mouse) namespace: protein -def: "A serine hydroxymethyltransferase, mitochondrial that is encoded in the genome of mouse." [OMA:Q9CZN7, PANTHER:PTHR11680\:SF0, PRO:DNx] +def: "A serine hydroxymethyltransferase, mitochondrial that is encoded in the genome of mouse." [OMA:Q9CZN7, PRO:DNx] comment: Category=organism-gene. synonym: "glycine hydroxymethyltransferase (mouse)" RELATED [UniProtKB:Q9CZN7] synonym: "mSHMT2" EXACT PRO-short-label [PRO:DNx] @@ -286433,16 +287403,17 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9CZX8 -name: 40S ribosomal protein S19 (mouse) +name: small ribosomal subunit protein eS19 (mouse) namespace: protein -def: "A 40S ribosomal protein S19 that is encoded in the genome of mouse." [OMA:Q9CZX8, PRO:DNx] +def: "A small ribosomal subunit protein eS19 that is encoded in the genome of mouse." [OMA:Q9CZX8, PRO:DNx] comment: Category=organism-gene. +synonym: "40S ribosomal protein S19 (mouse)" EXACT [UniProtKB:Q9CZX8] synonym: "mRPS19" EXACT PRO-short-label [PRO:DNx] synonym: "Rps19" RELATED Gene-based [UniProtKB:Q9CZX8] xref: UniProtKB:Q9CZX8 -is_a: PR:000014261 ! 40S ribosomal protein S19 +is_a: PR:000014261 ! small ribosomal subunit protein eS19 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000014261 ! 40S ribosomal protein S19 +intersection_of: PR:000014261 ! small ribosomal subunit protein eS19 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1333780 ! Rps19 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -286944,18 +287915,19 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9D0Y8 -name: 39S ribosomal protein L52, mitochondrial (mouse) +name: large ribosomal subunit protein mL52 (mouse) namespace: protein -def: "A 39S ribosomal protein L52, mitochondrial that is encoded in the genome of mouse." [OMA:Q9D0Y8, PRO:DNx] +def: "A large ribosomal subunit protein mL52 that is encoded in the genome of mouse." [OMA:Q9D0Y8, PRO:DNx] comment: Category=organism-gene. +synonym: "39S ribosomal protein L52, mitochondrial (mouse)" EXACT [UniProtKB:Q9D0Y8] synonym: "L52mt (mouse)" EXACT [UniProtKB:Q9D0Y8] synonym: "mMRPL52" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-L52 (mouse)" EXACT [UniProtKB:Q9D0Y8] synonym: "Mrpl52" RELATED Gene-based [UniProtKB:Q9D0Y8] xref: UniProtKB:Q9D0Y8 -is_a: PR:000010613 ! 39S ribosomal protein L52, mitochondrial +is_a: PR:000010613 ! large ribosomal subunit protein mL52 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000010613 ! 39S ribosomal protein L52, mitochondrial +intersection_of: PR:000010613 ! large ribosomal subunit protein mL52 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1916086 ! Mrpl52 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -287090,18 +288062,19 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9D1B9 -name: 39S ribosomal protein L28, mitochondrial (mouse) +name: large ribosomal subunit protein bL28m (mouse) namespace: protein -def: "A 39S ribosomal protein L28, mitochondrial that is encoded in the genome of mouse." [OMA:Q9D1B9, PRO:DNx] +def: "A large ribosomal subunit protein bL28m that is encoded in the genome of mouse." [OMA:Q9D1B9, PRO:DNx] comment: Category=organism-gene. +synonym: "39S ribosomal protein L28, mitochondrial (mouse)" EXACT [UniProtKB:Q9D1B9] synonym: "L28mt (mouse)" EXACT [UniProtKB:Q9D1B9] synonym: "mMRPL28" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-L28 (mouse)" EXACT [UniProtKB:Q9D1B9] synonym: "Mrpl28" RELATED Gene-based [UniProtKB:Q9D1B9] xref: UniProtKB:Q9D1B9 -is_a: PR:000010589 ! 39S ribosomal protein L28, mitochondrial +is_a: PR:000010589 ! large ribosomal subunit protein bL28m is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000010589 ! 39S ribosomal protein L28, mitochondrial +intersection_of: PR:000010589 ! large ribosomal subunit protein bL28m intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1915861 ! Mrpl28 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -287170,7 +288143,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q9D1E4 name: cysteine-rich tail protein 1 (mouse) namespace: protein -def: "A cysteine-rich tail protein 1 that is encoded in the genome of mouse." [OMA:Q9D1E4, PRO:DNx] +def: "A cysteine-rich tail protein 1 that is encoded in the genome of mouse." [PRO:DNx] comment: Category=organism-gene. synonym: "Cysrt1" RELATED Gene-based [UniProtKB:Q9D1E4] synonym: "mCYSRT1" EXACT PRO-short-label [PRO:DNx] @@ -287290,18 +288263,19 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9D1I6 -name: 39S ribosomal protein L14, mitochondrial (mouse) +name: large ribosomal subunit protein uL14m (mouse) namespace: protein -def: "A 39S ribosomal protein L14, mitochondrial that is encoded in the genome of mouse." [OMA:Q9D1I6, PRO:DNx] +def: "A large ribosomal subunit protein uL14m that is encoded in the genome of mouse." [OMA:Q9D1I6, PRO:DNx] comment: Category=organism-gene. +synonym: "39S ribosomal protein L14, mitochondrial (mouse)" EXACT [UniProtKB:Q9D1I6] synonym: "L14mt (mouse)" EXACT [UniProtKB:Q9D1I6] synonym: "mMRPL14" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-L14 (mouse)" EXACT [UniProtKB:Q9D1I6] synonym: "Mrpl14" RELATED Gene-based [UniProtKB:Q9D1I6] xref: UniProtKB:Q9D1I6 -is_a: PR:000010576 ! 39S ribosomal protein L14, mitochondrial +is_a: PR:000010576 ! large ribosomal subunit protein uL14m is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000010576 ! 39S ribosomal protein L14, mitochondrial +intersection_of: PR:000010576 ! large ribosomal subunit protein uL14m intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1333864 ! Mrpl14 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -287330,7 +288304,7 @@ name: protein SEC13 homolog (mouse) namespace: protein def: "A protein SEC13 that is encoded in the genome of mouse." [OMA:Q9D1M0, PRO:DNx] comment: Category=organism-gene. -synonym: "GATOR complex protein SEC13 (mouse)" EXACT [UniProtKB:Q9D1M0] +synonym: "GATOR2 complex protein SEC13 (mouse)" EXACT [UniProtKB:Q9D1M0] synonym: "mSEC13" EXACT PRO-short-label [PRO:DNx] synonym: "Sec13" RELATED Gene-based [UniProtKB:Q9D1M0] synonym: "SEC13-like protein 1 (mouse)" EXACT [UniProtKB:Q9D1M0] @@ -287364,19 +288338,20 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9D1N9 -name: 39S ribosomal protein L21, mitochondrial (mouse) +name: large ribosomal subunit protein bL21m (mouse) namespace: protein -def: "A 39S ribosomal protein L21, mitochondrial that is encoded in the genome of mouse." [OMA:Q9D1N9, PRO:DNx] +def: "A large ribosomal subunit protein bL21m that is encoded in the genome of mouse." [OMA:Q9D1N9, PRO:DNx] comment: Category=organism-gene. +synonym: "39S ribosomal protein L21, mitochondrial (mouse)" EXACT [UniProtKB:Q9D1N9] synonym: "D9Wsu149" RELATED Gene-based [UniProtKB:Q9D1N9] synonym: "L21mt (mouse)" EXACT [UniProtKB:Q9D1N9] synonym: "mMRPL21" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-L21 (mouse)" EXACT [UniProtKB:Q9D1N9] synonym: "Mrpl21" RELATED Gene-based [UniProtKB:Q9D1N9] xref: UniProtKB:Q9D1N9 -is_a: PR:000010584 ! 39S ribosomal protein L21, mitochondrial +is_a: PR:000010584 ! large ribosomal subunit protein bL21m is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000010584 ! 39S ribosomal protein L21, mitochondrial +intersection_of: PR:000010584 ! large ribosomal subunit protein bL21m intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2660674 ! Mrpl21 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -287747,7 +288722,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q9D2Z1 name: carcinoembryonic antigen-related cell adhesion molecule 20 (mouse) namespace: protein -def: "A carcinoembryonic antigen-related cell adhesion molecule 20 that is encoded in the genome of mouse." [OMA:Q9D2Z1, PANTHER:PTHR19955\:SF50, PRO:DNx] +def: "A carcinoembryonic antigen-related cell adhesion molecule 20 that is encoded in the genome of mouse." [OMA:Q9D2Z1, PRO:DNx] comment: Category=organism-gene. synonym: "Ceacam20" RELATED Gene-based [UniProtKB:Q9D2Z1] synonym: "mCEACAM20" EXACT PRO-short-label [PRO:DNx] @@ -287968,7 +288943,7 @@ is_a: PR:000029032 ! Mus musculus protein is_a: PR:000030218 ! calaxin intersection_of: PR:000030218 ! calaxin intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1914043 ! Efcab1 (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1914043 ! Clxn (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -288128,7 +289103,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q9D4G2 name: heat shock factor 2-binding protein (mouse) namespace: protein -def: "A heat shock factor 2-binding protein that is encoded in the genome of mouse." [OMA:Q9D4G2, PANTHER:PTHR15434\:SF0, PRO:DNx] +def: "A heat shock factor 2-binding protein that is encoded in the genome of mouse." [OMA:Q9D4G2, PRO:DNx] comment: Category=organism-gene. synonym: "Hsf2bp" RELATED Gene-based [UniProtKB:Q9D4G2] synonym: "Meilb2" RELATED Gene-based [UniProtKB:Q9D4G2] @@ -288770,7 +289745,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q9D708 name: protein S100-A16 (mouse) namespace: protein -def: "A protein S100-A16 that is encoded in the genome of mouse." [OMA:Q9D708, PANTHER:PTHR11639\:SF2, PRO:DNx] +def: "A protein S100-A16 that is encoded in the genome of mouse." [OMA:Q9D708, PRO:DNx] comment: Category=organism-gene. synonym: "mS100A16" EXACT PRO-short-label [PRO:DNx] synonym: "protein S100F (mouse)" EXACT [UniProtKB:Q9D708] @@ -288840,18 +289815,19 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9D773 -name: 39S ribosomal protein L2, mitochondrial (mouse) +name: large ribosomal subunit protein uL2m (mouse) namespace: protein -def: "A 39S ribosomal protein L2, mitochondrial that is encoded in the genome of mouse." [PRO:DNx] +def: "A large ribosomal subunit protein uL2m that is encoded in the genome of mouse." [PRO:DNx] comment: Category=organism-gene. +synonym: "39S ribosomal protein L2, mitochondrial (mouse)" EXACT [UniProtKB:Q9D773] synonym: "L2mt (mouse)" EXACT [UniProtKB:Q9D773] synonym: "mMRPL2" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-L2 (mouse)" EXACT [UniProtKB:Q9D773] synonym: "Mrpl2" RELATED Gene-based [UniProtKB:Q9D773] xref: UniProtKB:Q9D773 -is_a: PR:000010582 ! 39S ribosomal protein L2, mitochondrial +is_a: PR:000010582 ! large ribosomal subunit protein uL2m is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000010582 ! 39S ribosomal protein L2, mitochondrial +intersection_of: PR:000010582 ! large ribosomal subunit protein uL2m intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1351622 ! Mrpl2 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -290449,19 +291425,20 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9DB15 -name: 39S ribosomal protein L12, mitochondrial (mouse) +name: large ribosomal subunit protein bL12m (mouse) namespace: protein -def: "A 39S ribosomal protein L12, mitochondrial that is encoded in the genome of mouse." [OMA:Q9DB15, PRO:DAN] +def: "A large ribosomal subunit protein bL12m that is encoded in the genome of mouse." [OMA:Q9DB15, PRO:DAN] comment: Category=organism-gene. +synonym: "39S ribosomal protein L12, mitochondrial (mouse)" EXACT [UniProtKB:Q9DB15] synonym: "L12mt (mouse)" EXACT [UniProtKB:Q9DB15] synonym: "mMRPL12" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-L12 (mouse)" EXACT [UniProtKB:Q9DB15] synonym: "Mrpl12" RELATED Gene-based [UniProtKB:Q9DB15] synonym: "Rpml12" RELATED Gene-based [UniProtKB:Q9DB15] xref: UniProtKB:Q9DB15 -is_a: PR:000010574 ! 39S ribosomal protein L12, mitochondrial +is_a: PR:000010574 ! large ribosomal subunit protein bL12m is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000010574 ! 39S ribosomal protein L12, mitochondrial +intersection_of: PR:000010574 ! large ribosomal subunit protein bL12m intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1926273 ! Mrpl12 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -290502,7 +291479,7 @@ is_a: PR:000004465 ! ATP synthase subunit O, mitochondrial is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000004465 ! ATP synthase subunit O, mitochondrial intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:106341 ! Atp5o (mouse) +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:106341 ! Atp5po (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] @@ -290944,6 +291921,25 @@ intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1921406 ! Acot12 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: PR:Q9DBK7 +name: ubiquitin-like modifier-activating enzyme 7 (mouse) +namespace: protein +def: "A ubiquitin-like modifier-activating enzyme 7 that is encoded in the genome of mouse." [OMA:Q9DBK7, PRO:DNx] +comment: Category=organism-gene. +synonym: "mUBA7" EXACT PRO-short-label [PRO:DNx] +synonym: "Uba7" RELATED Gene-based [UniProtKB:Q9DBK7] +synonym: "Ube1l" RELATED Gene-based [UniProtKB:Q9DBK7] +synonym: "ubiquitin-activating enzyme 7 (mouse)" EXACT [UniProtKB:Q9DBK7] +synonym: "ubiquitin-activating enzyme E1 homolog (mouse)" EXACT [UniProtKB:Q9DBK7] +xref: UniProtKB:Q9DBK7 +is_a: PR:000016956 ! ubiquitin-like modifier-activating enzyme 7 +is_a: PR:000029032 ! Mus musculus protein +intersection_of: PR:000016956 ! ubiquitin-like modifier-activating enzyme 7 +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1349462 ! Uba7 (mouse) +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: PR:Q9DBL1 name: short/branched chain specific acyl-CoA dehydrogenase, mitochondrial (mouse) @@ -291408,10 +292404,11 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9DCI9 -name: 39S ribosomal protein L32, mitochondrial (mouse) +name: large ribosomal subunit protein bL32m (mouse) namespace: protein -def: "A 39S ribosomal protein L32, mitochondrial that is encoded in the genome of mouse." [OMA:Q9DCI9, PRO:DNx] +def: "A large ribosomal subunit protein bL32m that is encoded in the genome of mouse." [OMA:Q9DCI9, PRO:DNx] comment: Category=organism-gene. +synonym: "39S ribosomal protein L32, mitochondrial (mouse)" EXACT [UniProtKB:Q9DCI9] synonym: "heart-expressed gene 1 protein (mouse)" EXACT [UniProtKB:Q9DCI9] synonym: "Heg1" RELATED Gene-based [UniProtKB:Q9DCI9] synonym: "L32mt (mouse)" EXACT [UniProtKB:Q9DCI9] @@ -291419,9 +292416,9 @@ synonym: "mMRPL32" EXACT PRO-short-label [PRO:DNx] synonym: "MRP-L32 (mouse)" EXACT [UniProtKB:Q9DCI9] synonym: "Mrpl32" RELATED Gene-based [UniProtKB:Q9DCI9] xref: UniProtKB:Q9DCI9 -is_a: PR:000010592 ! 39S ribosomal protein L32, mitochondrial +is_a: PR:000010592 ! large ribosomal subunit protein bL32m is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000010592 ! 39S ribosomal protein L32, mitochondrial +intersection_of: PR:000010592 ! large ribosomal subunit protein bL32m intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:2137226 ! Mrpl32 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -291752,7 +292749,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9DDT2 name: phosphoinositide 3-kinase adapter protein 1 (chicken) namespace: protein -def: "A phosphoinositide 3-kinase adapter protein 1 that is encoded in the genome of chicken." [OMA:Q9DDT2, PANTHER:PTHR16267\:SF3, PRO:DNx] +def: "A phosphoinositide 3-kinase adapter protein 1 that is encoded in the genome of chicken." [OMA:Q9DDT2, PRO:DNx] comment: Category=organism-gene. synonym: "B-cell adapter for phosphoinositide 3-kinase (chicken)" EXACT [UniProtKB:Q9DDT2] synonym: "B-cell phosphoinositide 3-kinase adapter protein 1 (chicken)" EXACT [UniProtKB:Q9DDT2] @@ -291771,7 +292768,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9DEA3 name: proliferating cell nuclear antigen (chicken) namespace: protein -def: "A proliferating cell nuclear antigen that is encoded in the genome of chicken." [OMA:Q9DEA3, PANTHER:PTHR11352\:SF0, PRO:DNx] +def: "A proliferating cell nuclear antigen that is encoded in the genome of chicken." [OMA:Q9DEA3, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PCNA" EXACT PRO-short-label [PRO:DNx] synonym: "PCNA" RELATED Gene-based [UniProtKB:Q9DEA3] @@ -291805,7 +292802,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9DER5 name: teneurin-2 (chicken) namespace: protein -def: "A teneurin-2 that is encoded in the genome of chicken." [PANTHER:PTHR11219\:SF8, PRO:DNx] +def: "A teneurin-2 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-TENM2" EXACT PRO-short-label [PRO:DNx] synonym: "neurestin (chicken)" EXACT [UniProtKB:Q9DER5] @@ -291829,7 +292826,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9DG09 name: steroidogenic acute regulatory protein, mitochondrial (chicken) namespace: protein -def: "A steroidogenic acute regulatory protein, mitochondrial that is encoded in the genome of chicken." [OMA:Q9DG09, PANTHER:PTHR12136\:SF9, PRO:DNx] +def: "A steroidogenic acute regulatory protein, mitochondrial that is encoded in the genome of chicken." [OMA:Q9DG09, PRO:DNx] comment: Category=organism-gene. synonym: "chick-STAR" EXACT PRO-short-label [PRO:DNx] synonym: "STAR" RELATED Gene-based [UniProtKB:Q9DG09] @@ -291848,7 +292845,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9DG45 name: pterin-4-alpha-carbinolamine dehydratase 2 (chicken) namespace: protein -def: "A pterin-4-alpha-carbinolamine dehydratase 2 that is encoded in the genome of chicken." [PANTHER:PTHR12599\:SF0, PRO:DNx] +def: "A pterin-4-alpha-carbinolamine dehydratase 2 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "4-alpha-hydroxy-tetrahydropterin dehydratase 2 (chicken)" EXACT [UniProtKB:Q9DG45] synonym: "chick-PCBD2" EXACT PRO-short-label [PRO:DNx] @@ -292356,9 +293353,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9EQ20 -name: methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (mouse) +name: methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial (mouse) namespace: protein -def: "A methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial that is encoded in the genome of mouse." [OMA:Q9EQ20, PRO:DNx] +def: "A methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial that is encoded in the genome of mouse." [OMA:Q9EQ20, PRO:DNx] comment: Category=organism-gene. synonym: "aldehyde dehydrogenase family 6 member A1 (mouse)" EXACT [UniProtKB:Q9EQ20] synonym: "Aldh6a1" RELATED Gene-based [UniProtKB:Q9EQ20] @@ -292366,9 +293363,9 @@ synonym: "mALDH6A1" EXACT PRO-short-label [PRO:DNx] synonym: "malonate-semialdehyde dehydrogenase [acylating] (mouse)" EXACT [UniProtKB:Q9EQ20] synonym: "MMSDH (mouse)" EXACT [UniProtKB:Q9EQ20] xref: UniProtKB:Q9EQ20 -is_a: PR:000003930 ! methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial +is_a: PR:000003930 ! methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000003930 ! methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial +intersection_of: PR:000003930 ! methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1915077 ! Aldh6a1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -292589,7 +293586,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q9EQR3 name: small conductance calcium-activated potassium channel protein 1 (mouse) namespace: protein -def: "A small conductance calcium-activated potassium channel protein 1 that is encoded in the genome of mouse." [OMA:Q9EQR3, PRO:DNx] +def: "A small conductance calcium-activated potassium channel protein 1 that is encoded in the genome of mouse." [PRO:CNA] comment: Category=organism-gene. synonym: "KCa2.1 (mouse)" EXACT [UniProtKB:Q9EQR3] synonym: "Kcnn1" RELATED Gene-based [UniProtKB:Q9EQR3] @@ -292782,8 +293779,6 @@ name: calsyntenin-2 (mouse) namespace: protein def: "A calsyntenin-2 that is encoded in the genome of mouse." [OMA:Q9ER65, PRO:DNx] comment: Category=organism-gene. -synonym: "Alc-gamma (mouse)" EXACT [UniProtKB:Q9ER65] -synonym: "alcadein-gamma (mouse)" EXACT [UniProtKB:Q9ER65] synonym: "Clstn2" RELATED Gene-based [UniProtKB:Q9ER65] synonym: "Cs2" RELATED Gene-based [UniProtKB:Q9ER65] synonym: "Cstn2" RELATED Gene-based [UniProtKB:Q9ER65] @@ -295709,6 +296704,7 @@ namespace: protein def: "A thioredoxin-related transmembrane protein 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9H3N1] comment: Category=organism-gene. synonym: "hTMX1" EXACT PRO-short-label [PRO:DNx] +synonym: "protein disulfide-isomerase TMX1 (human)" EXACT [UniProtKB:Q9H3N1] synonym: "PSEC0085" RELATED Gene-based [UniProtKB:Q9H3N1] synonym: "thioredoxin domain-containing protein 1 (human)" EXACT [UniProtKB:Q9H3N1] synonym: "TMX" RELATED Gene-based [UniProtKB:Q9H3N1] @@ -295755,6 +296751,7 @@ synonym: "BORG4" RELATED Gene-based [UniProtKB:Q9H3Q1] synonym: "CDC42EP4" RELATED Gene-based [UniProtKB:Q9H3Q1] synonym: "CEP4" RELATED Gene-based [UniProtKB:Q9H3Q1] synonym: "hCDC42EP4" EXACT PRO-short-label [PRO:DNx] +xref: Reactome:R-HSA-9691381 "PR:Q9H3Q1 located_in GO:0005829" xref: UniProtKB:Q9H3Q1 is_a: PR:000005211 ! Cdc42 effector protein 4 is_a: PR:000029067 ! Homo sapiens protein @@ -296551,6 +297548,7 @@ synonym: "EPS8L2" RELATED Gene-based [UniProtKB:Q9H6S3] synonym: "EPS8R2" RELATED Gene-based [UniProtKB:Q9H6S3] synonym: "hEPS8L2" EXACT PRO-short-label [PRO:DNx] synonym: "PP13181" RELATED Gene-based [UniProtKB:Q9H6S3] +xref: Reactome:R-HSA-9663247 "PR:Q9H6S3 located_in GO:0005829" xref: UniProtKB:Q9H6S3 is_a: PR:000007149 ! epidermal growth factor receptor kinase substrate 8-like protein 2 is_a: PR:000029067 ! Homo sapiens protein @@ -298485,7 +299483,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q9I8D1 name: unconventional myosin-VI (chicken) namespace: protein -def: "A myosin-VI that is encoded in the genome of chicken." [PANTHER:PTHR13140\:SF26, PRO:DNx] +def: "A myosin-VI that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-MYO6" EXACT PRO-short-label [PRO:DNx] synonym: "CMY6" RELATED Gene-based [UniProtKB:Q9I8D1] @@ -298503,7 +299501,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9I8D8 name: CD40 ligand (chicken) namespace: protein -def: "A tumor necrosis factor ligand superfamily member 5 that is encoded in the genome of chicken." [OMA:Q9I8D8, PANTHER:PTHR11471\:SF5, PRO:DNx] +def: "A tumor necrosis factor ligand superfamily member 5 that is encoded in the genome of chicken." [PRO:WCB] comment: Category=organism-gene. synonym: "CD40-L (chicken)" EXACT [UniProtKB:Q9I8D8] synonym: "CD40L" RELATED Gene-based [UniProtKB:Q9I8D8] @@ -298540,7 +299538,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9I8P6 name: otoraplin (chicken) namespace: protein -def: "An otoraplin that is encoded in the genome of chicken." [OMA:Q9I8P6, PANTHER:PTHR23158\:SF17, PRO:DNx] +def: "An otoraplin that is encoded in the genome of chicken." [OMA:Q9I8P6, PRO:DNx] comment: Category=organism-gene. synonym: "chick-OTOR" EXACT PRO-short-label [PRO:DNx] synonym: "OTOR" RELATED Gene-based [UniProtKB:Q9I8P6] @@ -298556,7 +299554,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9I8W6 name: protein EURL (chicken) namespace: protein -def: "A protein EURL that is encoded in the genome of chicken." [PANTHER:PTHR15961\:SF0, PRO:DNx] +def: "A protein EURL that is encoded in the genome of chicken." [OMA:Q9I8W6, PRO:DNx] comment: Category=organism-gene. synonym: "chick-EURL" EXACT PRO-short-label [PRO:DNx] synonym: "early undifferentiated retina and lens protein (chicken)" EXACT [UniProtKB:Q9I8W6] @@ -298573,7 +299571,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9I923 name: regucalcin (chicken) namespace: protein -def: "A regucalcin that is encoded in the genome of chicken." [PANTHER:PTHR10907\:SF11, PRO:DNx] +def: "A regucalcin that is encoded in the genome of chicken." [OMA:Q9I923, PRO:DNx] comment: Category=organism-gene. synonym: "chick-RGN" EXACT PRO-short-label [PRO:DNx] synonym: "gluconolactonase (chicken)" EXACT [UniProtKB:Q9I923] @@ -298592,7 +299590,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9I946 name: platelet-derived growth factor C (chicken) namespace: protein -def: "A platelet-derived growth factor C that is encoded in the genome of chicken." [OMA:Q9I946, PANTHER:PTHR10127\:SF316, PRO:DNx] +def: "A platelet-derived growth factor C that is encoded in the genome of chicken." [OMA:Q9I946, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PDGFC" EXACT PRO-short-label [PRO:DNx] synonym: "PDGF-C (chicken)" EXACT [UniProtKB:Q9I946] @@ -298611,7 +299609,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9I9K9 name: glycine amidinotransferase, mitochondrial (chicken) namespace: protein -def: "A glycine amidinotransferase, mitochondrial that is encoded in the genome of chicken." [PANTHER:PTHR10488\:SF0, PRO:DNx] +def: "A glycine amidinotransferase, mitochondrial that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "AT" RELATED Gene-based [UniProtKB:Q9I9K9] synonym: "chick-GATM" EXACT PRO-short-label [PRO:DNx] @@ -298623,14 +299621,13 @@ is_a: PR:000007865 ! glycine amidinotransferase, mitochondrial is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000007865 ! glycine amidinotransferase, mitochondrial intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/395504 ! GATM (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] id: PR:Q9I9R0 name: intracellular hyaluronan-binding protein 4 (chicken) namespace: protein -def: "An intracellular hyaluronan-binding protein 4 that is encoded in the genome of chicken." [PANTHER:PTHR12299\:SF7, PRO:DNx] +def: "An intracellular hyaluronan-binding protein 4 that is encoded in the genome of chicken." [OMA:Q9I9R0, PRO:DNx] comment: Category=organism-gene. synonym: "chick-HABP4" EXACT PRO-short-label [PRO:DNx] synonym: "HABP4" RELATED Gene-based [UniProtKB:Q9I9R0] @@ -298647,7 +299644,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9IA05 name: frizzled-4 (chicken) namespace: protein -def: "A frizzled-4 that is encoded in the genome of chicken." [OMA:Q9IA05, PANTHER:PTHR11309\:SF23, PRO:DNx] +def: "A frizzled-4 that is encoded in the genome of chicken." [OMA:Q9IA05, PRO:DNx] comment: Category=organism-gene. synonym: "cFz-4 (chicken)" EXACT [UniProtKB:Q9IA05] synonym: "chick-FZD4" EXACT PRO-short-label [PRO:DNx] @@ -298666,7 +299663,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9IA96 name: secreted frizzled-related protein 2 (chicken) namespace: protein -def: "A secreted frizzled-related protein 2 that is encoded in the genome of chicken." [PRO:DNx] +def: "A secreted frizzled-related protein 2 that is encoded in the genome of chicken." [OMA:Q9IA96, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SFRP2" EXACT PRO-short-label [PRO:DNx] synonym: "sFRP-2 (chicken)" EXACT [UniProtKB:Q9IA96] @@ -298683,7 +299680,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9IAK4 name: noelin (chicken) namespace: protein -def: "A noelin that is encoded in the genome of chicken." [OMA:Q9IAK4, PANTHER:PTHR23192\:SF9, PRO:DNx] +def: "A noelin that is encoded in the genome of chicken." [OMA:Q9IAK4, PRO:DNx] comment: Category=organism-gene. synonym: "chick-OLFM1" EXACT PRO-short-label [PRO:DNx] synonym: "neuronal olfactomedin-related ER localized protein (chicken)" EXACT [UniProtKB:Q9IAK4] @@ -298723,7 +299720,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9IAM7 name: double-strand break repair protein MRE11 (chicken) namespace: protein -def: "A double-strand break repair protein MRE11 that is encoded in the genome of chicken." [PANTHER:PTHR10139\:SF0, PRO:DNx] +def: "A double-strand break repair protein MRE11 that is encoded in the genome of chicken." [OMA:Q9IAM7, PRO:DNx] comment: Category=organism-gene. synonym: "chick-MRE11" EXACT PRO-short-label [PRO:DNx] synonym: "MRE11" RELATED Gene-based [UniProtKB:Q9IAM7] @@ -298840,17 +299837,17 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9JHE7 -name: protein TSSC4 (mouse) +name: U5 small nuclear ribonucleoprotein TSSC4 (mouse) namespace: protein -def: "A protein TSSC4 that is encoded in the genome of mouse." [OMA:Q9JHE7, PRO:DNx] +def: "A U5 small nuclear ribonucleoprotein TSSC4 that is encoded in the genome of mouse." [OMA:Q9JHE7, PRO:DNx] comment: Category=organism-gene. synonym: "MNCb-3063" RELATED Gene-based [UniProtKB:Q9JHE7] synonym: "mTSSC4" EXACT PRO-short-label [PRO:DNx] synonym: "Tssc4" RELATED Gene-based [UniProtKB:Q9JHE7] xref: UniProtKB:Q9JHE7 -is_a: PR:000016769 ! protein TSSC4 +is_a: PR:000016769 ! U5 small nuclear ribonucleoprotein TSSC4 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000016769 ! protein TSSC4 +intersection_of: PR:000016769 ! U5 small nuclear ribonucleoprotein TSSC4 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1861712 ! Tssc4 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -299199,22 +300196,22 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9JHW9 -name: aldehyde dehydrogenase family 1 member A3 (mouse) +name: retinaldehyde dehydrogenase 3 (mouse) namespace: protein -def: "An aldehyde dehydrogenase family 1 member A3 that is encoded in the genome of mouse." [OMA:Q9JHW9, PRO:DNx] +def: "A retinaldehyde dehydrogenase 3 that is encoded in the genome of mouse." [OMA:Q9JHW9, PRO:DNx] comment: Category=organism-gene. synonym: "aldehyde dehydrogenase 6 (mouse)" EXACT [UniProtKB:Q9JHW9] +synonym: "aldehyde dehydrogenase family 1 member A3 (mouse)" EXACT [UniProtKB:Q9JHW9] synonym: "Aldh1a3" RELATED Gene-based [UniProtKB:Q9JHW9] synonym: "Aldh6" RELATED Gene-based [UniProtKB:Q9JHW9] synonym: "mALDH1A3" EXACT PRO-short-label [PRO:DNx] synonym: "RALDH-3 (mouse)" EXACT [UniProtKB:Q9JHW9] synonym: "Raldh3" RELATED Gene-based [UniProtKB:Q9JHW9] synonym: "RalDH3 (mouse)" EXACT [UniProtKB:Q9JHW9] -synonym: "retinaldehyde dehydrogenase 3 (mouse)" EXACT [UniProtKB:Q9JHW9] xref: UniProtKB:Q9JHW9 -is_a: PR:000003922 ! aldehyde dehydrogenase family 1 member A3 +is_a: PR:000003922 ! retinaldehyde dehydrogenase 3 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000003922 ! aldehyde dehydrogenase family 1 member A3 +intersection_of: PR:000003922 ! retinaldehyde dehydrogenase 3 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1861722 ! Aldh1a3 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -299279,10 +300276,14 @@ name: diphosphoinositol polyphosphate phosphohydrolase 1 (mouse) namespace: protein def: "A diphosphoinositol polyphosphate phosphohydrolase 1 that is encoded in the genome of mouse." [OMA:Q9JI46, PRO:DNx] comment: Category=organism-gene. -synonym: "diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 1 (mouse)" EXACT [UniProtKB:Q9JI46] +synonym: "Ap6A hydrolase (mouse)" EXACT [UniProtKB:Q9JI46] +synonym: "diadenosine hexaphosphate hydrolase (mouse)" EXACT [UniProtKB:Q9JI46] synonym: "Dipp" RELATED Gene-based [UniProtKB:Q9JI46] synonym: "DIPP-1 (mouse)" EXACT [UniProtKB:Q9JI46] synonym: "Dipp1" RELATED Gene-based [UniProtKB:Q9JI46] +synonym: "endopolyphosphatase (mouse)" EXACT [UniProtKB:Q9JI46] +synonym: "m7GpppN-mRNA hydrolase (mouse)" RELATED [UniProtKB:Q9JI46] +synonym: "m7GpppX diphosphatase (mouse)" RELATED [UniProtKB:Q9JI46] synonym: "mNUDT3" EXACT PRO-short-label [PRO:DNx] synonym: "muDIPP1 (mouse)" EXACT [UniProtKB:Q9JI46] synonym: "nucleoside diphosphate-linked moiety X motif 3 (mouse)" EXACT [UniProtKB:Q9JI46] @@ -299824,16 +300825,17 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9JJI8 -name: 60S ribosomal protein L38 (mouse) +name: large ribosomal subunit protein eL38 (mouse) namespace: protein -def: "A 60S ribosomal protein L38 that is encoded in the genome of mouse." [OMA:Q9JJI8, PRO:DNx] +def: "A large ribosomal subunit protein eL38 that is encoded in the genome of mouse." [OMA:Q9JJI8, PRO:DNx] comment: Category=organism-gene. +synonym: "60S ribosomal protein L38 (mouse)" EXACT [UniProtKB:Q9JJI8] synonym: "mRPL38" EXACT PRO-short-label [PRO:DNx] synonym: "Rpl38" RELATED Gene-based [UniProtKB:Q9JJI8] xref: UniProtKB:Q9JJI8 -is_a: PR:000014224 ! 60S ribosomal protein L38 +is_a: PR:000014224 ! large ribosomal subunit protein eL38 is_a: PR:000029032 ! Mus musculus protein -intersection_of: PR:000014224 ! 60S ribosomal protein L38 +intersection_of: PR:000014224 ! large ribosomal subunit protein eL38 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1914921 ! Rpl38 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -302351,6 +303353,7 @@ synonym: "FANCF" RELATED Gene-based [UniProtKB:Q9NPI8] synonym: "hFANCF" EXACT PRO-short-label [PRO:DNx] synonym: "protein FACF (human)" EXACT [UniProtKB:Q9NPI8] xref: Reactome:R-HSA-419537 "PR:Q9NPI8 located_in GO:0005654" +xref: Reactome:R-HSA-420794 "PR:Q9NPI8 located_in GO:0005829" xref: UniProtKB:Q9NPI8 is_a: PR:000007335 ! Fanconi anemia group F protein is_a: PR:000029067 ! Homo sapiens protein @@ -304584,6 +305587,7 @@ synonym: "hFANCL" EXACT PRO-short-label [PRO:DNx] synonym: "PHF9" RELATED Gene-based [UniProtKB:Q9NW38] synonym: "RING-type E3 ubiquitin transferase FANCL (human)" EXACT [UniProtKB:Q9NW38] xref: Reactome:R-HSA-419520 "PR:Q9NW38 located_in GO:0005654" +xref: Reactome:R-HSA-420789 "PR:Q9NW38 located_in GO:0005829" xref: UniProtKB:Q9NW38 is_a: PR:000007338 ! E3 ubiquitin-protein ligase FANCL is_a: PR:000029067 ! Homo sapiens protein @@ -305251,6 +306255,7 @@ synonym: "BTG4" RELATED Gene-based [UniProtKB:Q9NY30] synonym: "hBTG4" EXACT PRO-short-label [PRO:DNx] synonym: "PC3B" RELATED Gene-based [UniProtKB:Q9NY30] synonym: "protein PC3b (human)" EXACT [UniProtKB:Q9NY30] +xref: Reactome:R-HSA-9817641 "PR:Q9NY30 located_in GO:0005829" xref: UniProtKB:Q9NY30 is_a: PR:000004847 ! protein BTG4 is_a: PR:000029067 ! Homo sapiens protein @@ -305572,6 +306577,7 @@ def: "A CDGSH iron-sulfur domain-containing protein 1 that is encoded in the gen comment: Category=organism-gene. synonym: "C10orf70" RELATED Gene-based [UniProtKB:Q9NZ45] synonym: "CISD1" RELATED Gene-based [UniProtKB:Q9NZ45] +synonym: "cysteine transaminase CISD1 (human)" EXACT [UniProtKB:Q9NZ45] synonym: "hCISD1" EXACT PRO-short-label [PRO:DNx] synonym: "MDS029" RELATED Gene-based [UniProtKB:Q9NZ45] synonym: "MitoNEET (human)" EXACT [UniProtKB:Q9NZ45] @@ -305664,6 +306670,7 @@ comment: Category=organism-gene. synonym: "CLIC5" RELATED Gene-based [UniProtKB:Q9NZA1] synonym: "hCLIC5" EXACT PRO-short-label [PRO:DNx] xref: DTO:01100083 +xref: Reactome:R-HSA-2684965 "PR:Q9NZA1 located_in GO:0005886" xref: UniProtKB:Q9NZA1 is_a: PR:000005578 ! chloride intracellular channel protein 5 is_a: PR:000029067 ! Homo sapiens protein @@ -306460,6 +307467,7 @@ synonym: "hSENP1" EXACT PRO-short-label [PRO:DNx] synonym: "SENP1" RELATED Gene-based [UniProtKB:Q9P0U3] synonym: "sentrin/SUMO-specific protease SENP1 (human)" EXACT [UniProtKB:Q9P0U3] xref: Reactome:R-HSA-2984299 "PR:Q9P0U3 located_in GO:0005654" +xref: Reactome:R-HSA-9715128 "PR:Q9P0U3 located_in GO:0005829" xref: UniProtKB:Q9P0U3 is_a: PR:000014635 ! sentrin-specific protease 1 is_a: PR:000029067 ! Homo sapiens protein @@ -306758,6 +307766,7 @@ synonym: "PAK-7 (human)" EXACT [UniProtKB:Q9P286] synonym: "PAK5" RELATED Gene-based [UniProtKB:Q9P286] synonym: "PAK7" RELATED Gene-based [UniProtKB:Q9P286] xref: DTO:03100389 +xref: Reactome:R-HSA-211555 "PR:Q9P286 located_in GO:0005886" xref: Reactome:R-HSA-428459 "PR:Q9P286 located_in GO:0005829" xref: UniProtKB:Q9P286 is_a: PR:000012245 ! serine/threonine-protein kinase PAK 5 @@ -307062,7 +308071,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9PTD5 name: mitochondrial fission regulator 1 (chicken) namespace: protein -def: "A mitochondrial fission regulator 1 that is encoded in the genome of chicken." [OMA:Q9PTD5, PANTHER:PTHR14215\:SF0, PRO:DNx] +def: "A mitochondrial fission regulator 1 that is encoded in the genome of chicken." [OMA:Q9PTD5, PRO:DNx] comment: Category=organism-gene. synonym: "chick-MTFR1" EXACT PRO-short-label [PRO:DNx] synonym: "chondrocyte protein with a poly-proline region (chicken)" EXACT [UniProtKB:Q9PTD5] @@ -307080,7 +308089,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9PTJ6 name: CTD small phosphatase-like protein (chicken) namespace: protein -def: "A CTD small phosphatase-like protein that is encoded in the genome of chicken." [PANTHER:PTHR12210\:SF12, PRO:DNx] +def: "A CTD small phosphatase-like protein that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-CTDSPL" EXACT PRO-short-label [PRO:DNx] synonym: "CTDSP-like (chicken)" EXACT [UniProtKB:Q9PTJ6] @@ -307101,7 +308110,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9PU41 name: cholecystokinin (chicken) namespace: protein -def: "A cholecystokinin that is encoded in the genome of chicken." [PRO:DNx] +def: "A cholecystokinin that is encoded in the genome of chicken." [OMA:Q9PU41, PRO:DNx] comment: Category=organism-gene. synonym: "CCK" RELATED Gene-based [UniProtKB:Q9PU41] synonym: "chick-CCK" EXACT PRO-short-label [PRO:DNx] @@ -307151,7 +308160,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9PW71 name: dual specificity protein phosphatase 4 (chicken) namespace: protein -def: "A dual specificity protein phosphatase 4 that is encoded in the genome of chicken." [OMA:Q9PW71, PANTHER:PTHR10159\:SF111, PRO:DNx] +def: "A dual specificity protein phosphatase 4 that is encoded in the genome of chicken." [OMA:Q9PW71, PRO:DNx] comment: Category=organism-gene. synonym: "chick-DUSP4" EXACT PRO-short-label [PRO:DNx] synonym: "DUSP4" RELATED Gene-based [UniProtKB:Q9PW71] @@ -307171,7 +308180,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9PW72 name: PDZ and LIM domain protein 4 (chicken) namespace: protein -def: "A PDZ and LIM domain protein 4 that is encoded in the genome of chicken." [PRO:DNx] +def: "A PDZ and LIM domain protein 4 that is encoded in the genome of chicken." [OMA:Q9PW72, PRO:DNx] comment: Category=organism-gene. synonym: "chick-PDLIM4" EXACT PRO-short-label [PRO:DNx] synonym: "LIM protein RIL (chicken)" EXACT [UniProtKB:Q9PW72] @@ -307190,7 +308199,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9PWB0 name: cerberus (chicken) namespace: protein -def: "A cerberus that is encoded in the genome of chicken." [OMA:Q9PWB0, PRO:DNx] +def: "A cerberus that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "CER1" RELATED Gene-based [UniProtKB:Q9PWB0] synonym: "chick-CER1" EXACT PRO-short-label [PRO:DNx] @@ -307199,16 +308208,15 @@ is_a: PR:000005361 ! cerberus is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000005361 ! cerberus intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00000060895 ! CER1 copy 1 (chicken) -relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00010016448 ! CER1 copy 2 (chicken) -relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00015030133 ! CER1 copy 3 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00010016448.1 ! CER1 copy 1 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00015030133 ! CER1 copy 2 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] id: PR:Q9PWE8 name: T-box transcription factor TBX5 (chicken) namespace: protein -def: "A T-box transcription factor TBX5 that is encoded in the genome of chicken." [OMA:Q9PWE8, PANTHER:PTHR11267\:SF28, PRO:DNx] +def: "A T-box transcription factor TBX5 that is encoded in the genome of chicken." [OMA:Q9PWE8, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TBX5" EXACT PRO-short-label [PRO:DNx] synonym: "T-box protein 5 (chicken)" EXACT [UniProtKB:Q9PWE8] @@ -307590,7 +308598,6 @@ name: cell cycle checkpoint protein RAD1 (mouse) namespace: protein def: "A cell cycle checkpoint protein RAD1 that is encoded in the genome of mouse." [OMA:Q9QWZ1, PRO:DNx] comment: Category=organism-gene. -synonym: "DNA repair exonuclease rad1 homolog (mouse)" EXACT [UniProtKB:Q9QWZ1] synonym: "mRAD1" EXACT PRO-short-label [PRO:DNx] synonym: "Rad1" RELATED Gene-based [UniProtKB:Q9QWZ1] synonym: "Rad1-like DNA damage checkpoint protein (mouse)" EXACT [UniProtKB:Q9QWZ1] @@ -308521,6 +309528,7 @@ comment: Category=organism-gene. synonym: "Adh2" RELATED Gene-based [UniProtKB:Q9QYY9] synonym: "ADH2 (mouse)" EXACT [UniProtKB:Q9QYY9] synonym: "Adh4" RELATED Gene-based [UniProtKB:Q9QYY9] +synonym: "alcohol dehydrogenase 2 (mouse)" RELATED [UniProtKB:Q9QYY9] synonym: "alcohol dehydrogenase 4 (mouse)" EXACT [UniProtKB:Q9QYY9] synonym: "alcohol dehydrogenase class II (mouse)" EXACT [UniProtKB:Q9QYY9] synonym: "alcohol dehydrogenase II (mouse)" EXACT [UniProtKB:Q9QYY9] @@ -308720,6 +309728,8 @@ synonym: "Dcun1l1" RELATED Gene-based [UniProtKB:Q9QZ73] synonym: "defective in cullin neddylation protein 1-like protein 1 (mouse)" EXACT [UniProtKB:Q9QZ73] synonym: "mDCUN1D1" EXACT PRO-short-label [PRO:DNx] synonym: "Rp42" RELATED Gene-based [UniProtKB:Q9QZ73] +synonym: "SCCRO" RELATED Gene-based [UniProtKB:Q9QZ73] +synonym: "squamous cell carcinoma-related oncogene (mouse)" EXACT [UniProtKB:Q9QZ73] synonym: "Tes3" RELATED Gene-based [UniProtKB:Q9QZ73] synonym: "testis-specific protein 3 (mouse)" EXACT [UniProtKB:Q9QZ73] xref: UniProtKB:Q9QZ73 @@ -308974,7 +309984,6 @@ comment: Category=organism-gene. synonym: "mRNF25" EXACT PRO-short-label [PRO:DNx] synonym: "RING finger protein 25 (mouse)" EXACT [UniProtKB:Q9QZR0] synonym: "RING finger protein AO7 (mouse)" EXACT [UniProtKB:Q9QZR0] -synonym: "RING-type E3 ubiquitin transferase RNF25 (mouse)" EXACT [UniProtKB:Q9QZR0] synonym: "Rnf25" RELATED Gene-based [UniProtKB:Q9QZR0] xref: UniProtKB:Q9QZR0 is_a: PR:000014127 ! E3 ubiquitin-protein ligase RNF25 @@ -309152,7 +310161,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q9R069 name: basal cell adhesion molecule (mouse) namespace: protein -def: "A basal cell adhesion molecule that is encoded in the genome of mouse." [OMA:Q9R069, PANTHER:PTHR11973\:SF3, PRO:DNx] +def: "A basal cell adhesion molecule that is encoded in the genome of mouse." [OMA:Q9R069, PRO:DNx] comment: Category=organism-gene. synonym: "B-CAM cell surface glycoprotein (mouse)" EXACT [UniProtKB:Q9R069] synonym: "Bcam" RELATED Gene-based [UniProtKB:Q9R069] @@ -311494,6 +312503,7 @@ synonym: "hSWAP70" EXACT PRO-short-label [PRO:DNx] synonym: "KIAA0640" RELATED Gene-based [UniProtKB:Q9UH65] synonym: "SWAP-70 (human)" EXACT [UniProtKB:Q9UH65] synonym: "SWAP70" RELATED Gene-based [UniProtKB:Q9UH65] +xref: Reactome:R-HSA-9690929 "PR:Q9UH65 located_in GO:0005829" xref: UniProtKB:Q9UH65 is_a: PR:000015856 ! switch-associated protein 70 is_a: PR:000029067 ! Homo sapiens protein @@ -311746,9 +312756,9 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q9UHN6 -name: cell surface hyaluronidase (human) +name: inactive cell surface hyaluronidase CEMIP2 (human) namespace: protein -def: "A cell surface hyaluronidase that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9UHN6] +def: "A cell surface hyaluronidase CEMIP2 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9UHN6] comment: Category=organism-gene. synonym: "cell migration-inducing hyaluronidase 2 (human)" EXACT [UniProtKB:Q9UHN6] synonym: "CEMIP2" RELATED Gene-based [UniProtKB:Q9UHN6] @@ -311758,8 +312768,8 @@ synonym: "TMEM2" RELATED Gene-based [UniProtKB:Q9UHN6] synonym: "transmembrane protein 2 (human)" EXACT [] xref: UniProtKB:Q9UHN6 is_a: PR:000029067 ! Homo sapiens protein -is_a: PR:000030473 ! cell surface hyaluronidase -intersection_of: PR:000030473 ! cell surface hyaluronidase +is_a: PR:000030473 ! cell surface hyaluronidase CEMIP2 +intersection_of: PR:000030473 ! cell surface hyaluronidase CEMIP2 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -312842,6 +313852,7 @@ synonym: "MCIP3 (human)" EXACT [UniProtKB:Q9UKA8] synonym: "myocyte-enriched calcineurin-interacting protein 3 (human)" EXACT [UniProtKB:Q9UKA8] synonym: "RCAN3" RELATED Gene-based [UniProtKB:Q9UKA8] synonym: "regulator of calcineurin 3 (human)" EXACT [UniProtKB:Q9UKA8] +xref: Reactome:R-HSA-9728800 "PR:Q9UKA8 located_in GO:0005829" xref: UniProtKB:Q9UKA8 is_a: PR:000013831 ! calcipressin-3 is_a: PR:000029067 ! Homo sapiens protein @@ -314367,6 +315378,7 @@ def: "A Rho GTPase-activating protein 26 that is encoded in the genome of human. comment: Category=organism-gene. synonym: "ARHGAP26" RELATED Gene-based [UniProtKB:Q9UNA1] synonym: "GRAF" RELATED Gene-based [UniProtKB:Q9UNA1] +synonym: "GRAF1 (human)" EXACT [UniProtKB:Q9UNA1] synonym: "GTPase regulator associated with focal adhesion kinase (human)" EXACT [UniProtKB:Q9UNA1] synonym: "hARHGAP26" EXACT PRO-short-label [PRO:DNx] synonym: "KIAA0621" RELATED Gene-based [UniProtKB:Q9UNA1] @@ -314648,8 +315660,6 @@ comment: Category=organism-gene. synonym: "2,3-bisphosphoglycerate 3-phosphatase (human)" EXACT [UniProtKB:Q9UNW1] synonym: "2,3-BPG phosphatase (human)" EXACT [UniProtKB:Q9UNW1] synonym: "hMINPP1" EXACT PRO-short-label [PRO:DNx] -synonym: "inositol (1,3,4,5)-tetrakisphosphate 3-phosphatase (human)" EXACT [UniProtKB:Q9UNW1] -synonym: "Ins(1,3,4,5)P(4) 3-phosphatase (human)" EXACT [UniProtKB:Q9UNW1] synonym: "MINPP1" RELATED Gene-based [UniProtKB:Q9UNW1] synonym: "MIPP" RELATED Gene-based [UniProtKB:Q9UNW1] synonym: "UNQ900/PRO1917" RELATED Gene-based [UniProtKB:Q9UNW1] @@ -314662,19 +315672,20 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q9UNX3 -name: 60S ribosomal protein L26-like 1 (human) +name: ribosomal protein uL24-like (human) namespace: protein -def: "A 60S ribosomal protein L26-like 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9UNX3] +def: "A ribosomal protein uL24-like that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9UNX3] comment: Category=organism-gene. +synonym: "60S ribosomal protein L26-like 1 (human)" EXACT [UniProtKB:Q9UNX3] synonym: "hRPL26L1" EXACT PRO-short-label [PRO:DNx] synonym: "large ribosomal subunit protein uL24-like 1 (human)" EXACT [UniProtKB:Q9UNX3] synonym: "RPL26L1" RELATED Gene-based [UniProtKB:Q9UNX3] synonym: "RPL26P1" RELATED Gene-based [UniProtKB:Q9UNX3] xref: Reactome:R-HSA-72438 "PR:Q9UNX3 located_in GO:0005829" xref: UniProtKB:Q9UNX3 -is_a: PR:000014207 ! 60S ribosomal protein L26-like 1 +is_a: PR:000014207 ! ribosomal protein uL24-like is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000014207 ! 60S ribosomal protein L26-like 1 +intersection_of: PR:000014207 ! ribosomal protein uL24-like intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -315161,7 +316172,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9W676 name: LIM domain-binding protein 2 (chicken) namespace: protein -def: "A LIM domain-binding protein 2 that is encoded in the genome of chicken." [PANTHER:PTHR10378\:SF8, PRO:DNx] +def: "A LIM domain-binding protein 2 that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "carboxyl-terminal LIM domain-binding protein 1 (chicken)" EXACT [UniProtKB:Q9W676] synonym: "chick-LDB2" EXACT PRO-short-label [PRO:DNx] @@ -315183,7 +316194,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9W689 name: ataxin-3 (chicken) namespace: protein -def: "An ataxin-3 that is encoded in the genome of chicken." [OMA:Q9W689, PANTHER:PTHR14159\:SF0, PRO:DNx] +def: "An ataxin-3 that is encoded in the genome of chicken." [OMA:Q9W689, PRO:DNx] comment: Category=organism-gene. synonym: "ATXN3" RELATED Gene-based [UniProtKB:Q9W689] synonym: "chick-ATXN3" EXACT PRO-short-label [PRO:DNx] @@ -315202,7 +316213,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9W6H0 name: mimecan (chicken) namespace: protein -def: "A mimecan that is encoded in the genome of chicken." [OMA:Q9W6H0, PANTHER:PTHR24371\:SF35, PRO:DNx] +def: "A mimecan that is encoded in the genome of chicken." [OMA:Q9W6H0, PRO:DNx] comment: Category=organism-gene. synonym: "chick-OGN" EXACT PRO-short-label [PRO:DNx] synonym: "OGN" RELATED Gene-based [UniProtKB:Q9W6H0] @@ -315237,7 +316248,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9W6V5 name: receptor-type tyrosine-protein phosphatase eta (chicken) namespace: protein -def: "A receptor-type tyrosine-protein phosphatase eta that is encoded in the genome of chicken." [PANTHER:PTHR19134\:SF73, PRO:DNx] +def: "A receptor-type tyrosine-protein phosphatase eta that is encoded in the genome of chicken." [PRO:WCB] comment: Category=organism-gene. synonym: "chick-PTPRJ" EXACT PRO-short-label [PRO:DNx] synonym: "HPTP eta (chicken)" EXACT [UniProtKB:Q9W6V5] @@ -315259,7 +316270,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9W719 name: hypoxanthine-guanine phosphoribosyltransferase (chicken) namespace: protein -def: "A hypoxanthine-guanine phosphoribosyltransferase that is encoded in the genome of chicken." [PANTHER:PTHR22573\:SF8, PRO:DNx] +def: "A hypoxanthine-guanine phosphoribosyltransferase that is encoded in the genome of chicken." [OMA:Q9W719, PRO:DNx] comment: Category=organism-gene. synonym: "chick-HPRT1" EXACT PRO-short-label [PRO:DNx] synonym: "HGPRT (chicken)" EXACT [UniProtKB:Q9W719] @@ -315278,7 +316289,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9W757 name: transcription factor SOX-10 (chicken) namespace: protein -def: "A transcription factor SOX-10 that is encoded in the genome of chicken." [OMA:Q9W757, PANTHER:PTHR10270\:SF106, PRO:DNx] +def: "A transcription factor SOX-10 that is encoded in the genome of chicken." [OMA:Q9W757, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SOX10" EXACT PRO-short-label [PRO:DNx] synonym: "cSOX10 (chicken)" EXACT [UniProtKB:Q9W757] @@ -315295,7 +316306,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9W770 name: spondin-1 (chicken) namespace: protein -def: "A spondin-1 that is encoded in the genome of chicken." [PANTHER:PTHR11311\:SF2, PRO:DNx] +def: "A spondin-1 that is encoded in the genome of chicken." [OMA:Q9W770, PRO:DNx] comment: Category=organism-gene. synonym: "chick-SPON1" EXACT PRO-short-label [PRO:DNx] synonym: "F-spondin (chicken)" EXACT [UniProtKB:Q9W770] @@ -315312,7 +316323,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9W7C5 name: proheparin-binding EGF-like growth factor (chicken) namespace: protein -def: "A proheparin-binding EGF-like growth factor that is encoded in the genome of chicken." [OMA:Q9W7C5, PANTHER:PTHR10740\:SF4, PRO:DNx] +def: "A proheparin-binding EGF-like growth factor that is encoded in the genome of chicken." [OMA:Q9W7C5, PRO:DNx] comment: Category=organism-gene. synonym: "chick-HBEGF" EXACT PRO-short-label [PRO:DNx] synonym: "HBEGF" RELATED Gene-based [UniProtKB:Q9W7C5] @@ -316000,7 +317011,7 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus id: PR:Q9WUQ5 name: C-X-C motif chemokine 14 (mouse) namespace: protein -def: "A C-X-C motif chemokine 14 that is encoded in the genome of mouse." [OMA:Q9WUQ5, PANTHER:PTHR15188\:SF0, PRO:DNx] +def: "A C-X-C motif chemokine 14 that is encoded in the genome of mouse." [OMA:Q9WUQ5, PRO:DNx] comment: Category=organism-gene. synonym: "B-cell and monocyte-activating chemokine (mouse)" EXACT [UniProtKB:Q9WUQ5] synonym: "Bmac" RELATED Gene-based [UniProtKB:Q9WUQ5] @@ -316137,6 +317148,27 @@ intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1338023 ! Irag1 (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: PR:Q9WUZ6 +name: C-C motif chemokine 17 (mouse) +namespace: protein +def: "A C-C motif chemokine 17 that is encoded in the genome of mouse." [OMA:Q9WUZ6, PRO:DNx] +comment: Category=organism-gene. +synonym: "ABCD-2 (mouse)" EXACT [UniProtKB:Q9WUZ6] +synonym: "CC chemokine TARC (mouse)" EXACT [UniProtKB:Q9WUZ6] +synonym: "Ccl17" RELATED Gene-based [UniProtKB:Q9WUZ6] +synonym: "mCCL17" EXACT PRO-short-label [PRO:DNx] +synonym: "small-inducible cytokine A17 (mouse)" EXACT [UniProtKB:Q9WUZ6] +synonym: "Tarc" RELATED Gene-based [UniProtKB:Q9WUZ6] +synonym: "thymus and activation-regulated chemokine (mouse)" EXACT [UniProtKB:Q9WUZ6] +xref: UniProtKB:Q9WUZ6 +is_a: PR:000001989 ! C-C motif chemokine 17 +is_a: PR:000029032 ! Mus musculus protein +intersection_of: PR:000001989 ! C-C motif chemokine 17 +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: has_gene_template http://www.informatics.jax.org/marker/MGI:1329039 ! Ccl17 (mouse) +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: PR:Q9WV03 name: protein FAM50A (mouse) @@ -316944,17 +317976,20 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q9XRX5 -name: HERV-H LTR-associating protein 3 (human) +name: putative uncharacterized protein ANKRD13C-DT (human) namespace: protein -def: "A HERV-H LTR-associating protein 3 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9XRX5] +def: "A putative uncharacterized protein ANKRD13C-DT that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9XRX5] comment: Category=organism-gene. +synonym: "ANKRD13C divergent transcript (human)" EXACT [UniProtKB:Q9XRX5] +synonym: "ANKRD13C-DT" RELATED Gene-based [UniProtKB:Q9XRX5] +synonym: "HERV-H LTR-associating protein 3 (human)" EXACT [UniProtKB:Q9XRX5] synonym: "hHHLA3" EXACT PRO-short-label [PRO:DNx] synonym: "HHLA3" RELATED Gene-based [UniProtKB:Q9XRX5] synonym: "human endogenous retrovirus-H long terminal repeat-associating protein 3 (human)" EXACT [UniProtKB:Q9XRX5] xref: UniProtKB:Q9XRX5 -is_a: PR:000008545 ! HERV-H LTR-associating protein 3 +is_a: PR:000008545 ! putative uncharacterized protein ANKRD13C-DT is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000008545 ! HERV-H LTR-associating protein 3 +intersection_of: PR:000008545 ! putative uncharacterized protein ANKRD13C-DT intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -317026,6 +318061,7 @@ comment: Category=organism-gene. synonym: "GLCNE" RELATED Gene-based [UniProtKB:Q9Y223] synonym: "GNE" RELATED Gene-based [UniProtKB:Q9Y223] synonym: "hGNE" EXACT PRO-short-label [PRO:DNx] +synonym: "IBM2" RELATED Gene-based [UniProtKB:Q9Y223] synonym: "UDP-GlcNAc-2-epimerase/ManAc kinase (human)" EXACT [UniProtKB:Q9Y223] xref: Reactome:R-HSA-3781927 "PR:Q9Y223 located_in GO:0005829" xref: UniProtKB:Q9Y223 @@ -317537,6 +318573,9 @@ namespace: protein def: "A DnaJ homolog subfamily C member 16 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9Y2G8] comment: Category=organism-gene. synonym: "DNAJC16" RELATED Gene-based [UniProtKB:Q9Y2G8] +synonym: "endoplasmic reticulum DNA J domain-containing protein 8 (human)" EXACT [UniProtKB:Q9Y2G8] +synonym: "ER-resident protein ERdj8 (human)" EXACT [UniProtKB:Q9Y2G8] +synonym: "ERDJ8" RELATED Gene-based [UniProtKB:Q9Y2G8] synonym: "hDNAJC16" EXACT PRO-short-label [PRO:DNx] synonym: "KIAA0962" RELATED Gene-based [UniProtKB:Q9Y2G8] xref: UniProtKB:Q9Y2G8 @@ -317849,6 +318888,7 @@ synonym: "KCNIP3" RELATED Gene-based [UniProtKB:Q9Y2W7] synonym: "Kv channel-interacting protein 3 (human)" EXACT [UniProtKB:Q9Y2W7] xref: DTO:01100092 xref: Reactome:R-HSA-5577044 "PR:Q9Y2W7 located_in GO:0005886" +xref: Reactome:R-HSA-9640052 "PR:Q9Y2W7 located_in GO:0005654" xref: UniProtKB:Q9Y2W7 is_a: PR:000009262 ! calsenilin is_a: PR:000029067 ! Homo sapiens protein @@ -319023,6 +320063,7 @@ comment: Category=organism-gene. synonym: "hKCTD3" EXACT PRO-short-label [PRO:DNx] synonym: "KCTD3" RELATED Gene-based [UniProtKB:Q9Y597] synonym: "renal carcinoma antigen NY-REN-45 (human)" EXACT [UniProtKB:Q9Y597] +xref: Reactome:R-HSA-9714852 "PR:Q9Y597 located_in GO:0005886" xref: UniProtKB:Q9Y597 is_a: PR:000029067 ! Homo sapiens protein is_a: PR:000029573 ! BTB/POZ domain-containing protein KCTD3 @@ -319338,6 +320379,7 @@ synonym: "hORC6" EXACT PRO-short-label [PRO:DNx] synonym: "ORC6" RELATED Gene-based [UniProtKB:Q9Y5N6] synonym: "ORC6L" RELATED Gene-based [UniProtKB:Q9Y5N6] xref: Reactome:R-HSA-68539 "PR:Q9Y5N6 located_in GO:0005654" +xref: Reactome:R-HSA-9734663 "PR:Q9Y5N6 located_in GO:0005829" xref: UniProtKB:Q9Y5N6 is_a: PR:000012035 ! origin recognition complex subunit 6 is_a: PR:000029067 ! Homo sapiens protein @@ -319407,18 +320449,18 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q9Y5U2 -name: protein TSSC4 (human) +name: U5 small nuclear ribonucleoprotein TSSC4 (human) namespace: protein -def: "A protein TSSC4 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9Y5U2] +def: "A U5 small nuclear ribonucleoprotein TSSC4 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9Y5U2] comment: Category=organism-gene. synonym: "hTSSC4" EXACT PRO-short-label [PRO:DNx] synonym: "TSSC4" RELATED Gene-based [UniProtKB:Q9Y5U2] synonym: "tumor-suppressing STF cDNA 4 protein (human)" EXACT [UniProtKB:Q9Y5U2] synonym: "tumor-suppressing subchromosomal transferable fragment candidate gene 4 protein (human)" EXACT [UniProtKB:Q9Y5U2] xref: UniProtKB:Q9Y5U2 -is_a: PR:000016769 ! protein TSSC4 +is_a: PR:000016769 ! U5 small nuclear ribonucleoprotein TSSC4 is_a: PR:000029067 ! Homo sapiens protein -intersection_of: PR:000016769 ! protein TSSC4 +intersection_of: PR:000016769 ! U5 small nuclear ribonucleoprotein TSSC4 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -320165,6 +321207,7 @@ namespace: protein def: "A cytoplasmic dynein 1 light intermediate chain 1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9Y6G9] comment: Category=organism-gene. synonym: "DLC-A (human)" EXACT [UniProtKB:Q9Y6G9] +synonym: "DLIC-1 (human)" EXACT [UniProtKB:Q9Y6G9] synonym: "DNCLI1" RELATED Gene-based [UniProtKB:Q9Y6G9] synonym: "DYNC1LI1" RELATED Gene-based [UniProtKB:Q9Y6G9] synonym: "dynein light chain A (human)" EXACT [UniProtKB:Q9Y6G9] @@ -320355,6 +321398,7 @@ synonym: "protein PDZ-73 (human)" EXACT [UniProtKB:Q9Y6N9] synonym: "renal carcinoma antigen NY-REN-3 (human)" EXACT [UniProtKB:Q9Y6N9] synonym: "USH1C" RELATED Gene-based [UniProtKB:Q9Y6N9] synonym: "Usher syndrome type-1C protein (human)" EXACT [UniProtKB:Q9Y6N9] +xref: Reactome:R-HSA-9658864 "PR:Q9Y6N9 located_in GO:0005829" xref: UniProtKB:Q9Y6N9 is_a: PR:000017139 ! harmonin is_a: PR:000029067 ! Homo sapiens protein @@ -320579,7 +321623,7 @@ relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens id: PR:Q9YGC1 name: B-cell linker protein (chicken) namespace: protein -def: "A B-cell linker protein that is encoded in the genome of chicken." [PANTHER:PTHR14098\:SF3, PRO:DNx] +def: "A B-cell linker protein that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "B-cell adapter SH2 domain-containing protein (chicken)" EXACT [UniProtKB:Q9YGC1] synonym: "BASH" RELATED Gene-based [UniProtKB:Q9YGC1] @@ -320600,7 +321644,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9YGI5 name: deoxyribonuclease-1 (chicken) namespace: protein -def: "A deoxyribonuclease-1 that is encoded in the genome of chicken." [PANTHER:PTHR11371\:SF7, PRO:DNx] +def: "A deoxyribonuclease-1 that is encoded in the genome of chicken." [OMA:Q9YGI5, PRO:DNx] comment: Category=organism-gene. synonym: "chick-DNASE1" EXACT PRO-short-label [PRO:DNx] synonym: "deoxyribonuclease I (chicken)" EXACT [UniProtKB:Q9YGI5] @@ -320611,14 +321655,14 @@ is_a: PR:000006592 ! deoxyribonuclease-1 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000006592 ! deoxyribonuclease-1 intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/395725 ! DNASE1 (chicken) +relationship: has_gene_template http://www.ensembl.org/id/ENSGALG00010016709.1 ! DNASE1 (chicken) relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] id: PR:Q9YGL9 name: sarcoplasmic/endoplasmic reticulum calcium ATPase 3 (chicken) namespace: protein -def: "A sarcoplasmic/endoplasmic reticulum calcium ATPase 3 that is encoded in the genome of chicken." [PRO:DNx] +def: "A sarcoplasmic/endoplasmic reticulum calcium ATPase 3 that is encoded in the genome of chicken." [OMA:Q9YGL9, PRO:DNx] comment: Category=organism-gene. synonym: "ATP2A3" RELATED Gene-based [UniProtKB:Q9YGL9] synonym: "calcium pump 3 (chicken)" EXACT [UniProtKB:Q9YGL9] @@ -320638,7 +321682,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9YGV8 name: TATA box-binding protein-like 1 (chicken) namespace: protein -def: "A TATA box-binding protein-like 1 that is encoded in the genome of chicken." [OMA:Q9YGV8, PANTHER:PTHR10126\:SF13, PRO:DNx] +def: "A TATA box-binding protein-like 1 that is encoded in the genome of chicken." [OMA:Q9YGV8, PRO:DNx] comment: Category=organism-gene. synonym: "chick-TBPL1" EXACT PRO-short-label [PRO:DNx] synonym: "TBP" RELATED Gene-based [UniProtKB:Q9YGV8] @@ -320657,7 +321701,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9YH18 name: KH domain-containing RNA-binding protein QKI (chicken) namespace: protein -def: "A KH domain-containing RNA-binding protein QKI that is encoded in the genome of chicken." [PANTHER:PTHR11208\:SF8, PRO:DNx] +def: "A KH domain-containing RNA-binding protein QKI that is encoded in the genome of chicken." [PRO:DNx] comment: Category=organism-gene. synonym: "chick-QKI" EXACT PRO-short-label [PRO:DNx] synonym: "protein quaking (chicken)" EXACT [UniProtKB:Q9YH18] @@ -320674,7 +321718,7 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus id: PR:Q9YHY9 name: ornithine transcarbamylase, mitochondrial (chicken) namespace: protein -def: "An ornithine transcarbamylase, mitochondrial that is encoded in the genome of chicken." [PRO:DNx] +def: "An ornithine transcarbamylase, mitochondrial that is encoded in the genome of chicken." [OMA:Q9YHY9, PRO:DNx] comment: Category=organism-gene. synonym: "chick-OTC" EXACT PRO-short-label [PRO:DNx] synonym: "ornithine carbamoyltransferase, mitochondrial (chicken)" EXACT [UniProtKB:Q9YHY9] @@ -321112,6 +322156,8 @@ comment: Category=organism-gene. synonym: "CD271 (mouse)" EXACT [UniProtKB:Q9Z0W1] synonym: "low affinity neurotrophin receptor p75NTR (mouse)" EXACT [UniProtKB:Q9Z0W1] synonym: "low-affinity nerve growth factor receptor (mouse)" EXACT [UniProtKB:Q9Z0W1] +synonym: "low-affinity nerve growth factor receptor p75NGFR (mouse)" EXACT [UniProtKB:Q9Z0W1] +synonym: "low-affinity nerve growth factor receptor p75NGR (mouse)" EXACT [UniProtKB:Q9Z0W1] synonym: "mNGFR" EXACT PRO-short-label [PRO:DNx] synonym: "NGF receptor (mouse)" EXACT [UniProtKB:Q9Z0W1] synonym: "Ngfr" RELATED Gene-based [UniProtKB:Q9Z0W1] @@ -322519,8 +323565,6 @@ def: "A multiple inositol polyphosphate phosphatase 1 that is encoded in the gen comment: Category=organism-gene. synonym: "2,3-bisphosphoglycerate 3-phosphatase (mouse)" EXACT [UniProtKB:Q9Z2L6] synonym: "2,3-BPG phosphatase (mouse)" EXACT [UniProtKB:Q9Z2L6] -synonym: "inositol (1,3,4,5)-tetrakisphosphate 3-phosphatase (mouse)" EXACT [UniProtKB:Q9Z2L6] -synonym: "Ins(1,3,4,5)P(4) 3-phosphatase (mouse)" EXACT [UniProtKB:Q9Z2L6] synonym: "Minpp1" RELATED Gene-based [UniProtKB:Q9Z2L6] synonym: "Mipp" RELATED Gene-based [UniProtKB:Q9Z2L6] synonym: "mMINPP1" EXACT PRO-short-label [PRO:DNx] @@ -323662,6 +324706,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: http://birdgenenames.org/cgnc/GeneReport?id=49822 +name: MYL4 (chicken) +namespace: gene +def: "A protein coding gene MYL4 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: http://birdgenenames.org/cgnc/GeneReport?id=49842 name: S100A10 (chicken) @@ -324067,6 +325120,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: http://birdgenenames.org/cgnc/GeneReport?id=64420 +name: MAX (chicken) +namespace: gene +def: "A protein coding gene MAX in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: http://birdgenenames.org/cgnc/GeneReport?id=64760 name: HIST1H4I (chicken) @@ -324229,6 +325291,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: http://birdgenenames.org/cgnc/GeneReport?id=7304 +name: RARRES1 (chicken) +namespace: gene +def: "A protein coding gene RARRES1 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: http://birdgenenames.org/cgnc/GeneReport?id=7305 name: TWF1 (chicken) @@ -324392,7 +325463,106 @@ is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] -id: http://www.ensembl.org/id/ENSGALG00000060895 +id: http://www.ensembl.org/id/ENSGALG00000002816 +name: STK10 (chicken) +namespace: gene +def: "A protein coding gene STK10 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00000003430 +name: PMS2 copy 1 (chicken) +namespace: gene +def: "A protein coding gene PMS2 copy 1 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00000005800 +name: DCAF12 copy 1 (chicken) +namespace: gene +def: "A protein coding gene DCAF12 copy 1 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00000007314 +name: DSCAML1 (chicken) +namespace: gene +def: "A protein coding gene DSCAML1 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00000008145 +name: TYW5 (chicken) +namespace: gene +def: "A protein coding gene TYW5 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00000009978 +name: DTD2 copy 1 (chicken) +namespace: gene +def: "A protein coding gene DTD2 copy 1 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00000015155 +name: CARNMT1 copy 1 (chicken) +namespace: gene +def: "A protein coding gene CARNMT1 copy 1 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00000043641 +name: JUND copy 1 (chicken) +namespace: gene +def: "A protein coding gene JUND copy 1 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00010005617.1 +name: DTD2 copy 2 (chicken) +namespace: gene +def: "A protein coding gene DTD2 copy 2 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00010011712.1 +name: DCAF12 copy 2 (chicken) +namespace: gene +def: "A protein coding gene DCAF12 copy 2 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00010015413.1 +name: CARNMT1 copy 2 (chicken) +namespace: gene +def: "A protein coding gene CARNMT1 copy 2 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00010016448.1 name: CER1 copy 1 (chicken) namespace: gene def: "A protein coding gene CER1 copy 1 in chicken." [PRO:DNx] @@ -324401,19 +325571,109 @@ is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] -id: http://www.ensembl.org/id/ENSGALG00010016448 -name: CER1 copy 2 (chicken) +id: http://www.ensembl.org/id/ENSGALG00010016709.1 +name: DNASE1 (chicken) namespace: gene -def: "A protein coding gene CER1 copy 2 in chicken." [PRO:DNx] +def: "A protein coding gene DNASE1 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00010019860.1 +name: SIX6 copy 1 (chicken) +namespace: gene +def: "A protein coding gene SIX6 copy 1 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00010021776.1 +name: PMS2 copy 2 (chicken) +namespace: gene +def: "A protein coding gene PMS2 copy 2 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00010027307.1 +name: JUND copy 2 (chicken) +namespace: gene +def: "A protein coding gene JUND copy 2 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00015006398 +name: DTD2 copy 3 (chicken) +namespace: gene +def: "A protein coding gene DTD2 copy 3 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00015012382 +name: ULK3 (chicken) +namespace: gene +def: "A protein coding gene ULK3 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00015017903 +name: SIX6 copy 2 (chicken) +namespace: gene +def: "A protein coding gene SIX6 copy 2 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00015022024 +name: JUND copy 3 (chicken) +namespace: gene +def: "A protein coding gene JUND copy 3 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00015024139 +name: PMS2 copy 3 (chicken) +namespace: gene +def: "A protein coding gene PMS2 copy 3 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00015029355 +name: DCAF12 copy 3 (chicken) +namespace: gene +def: "A protein coding gene DCAF12 copy 3 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + +[Term] +id: http://www.ensembl.org/id/ENSGALG00015030055 +name: CARNMT1 copy 3 (chicken) +namespace: gene +def: "A protein coding gene CARNMT1 copy 3 in chicken." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] id: http://www.ensembl.org/id/ENSGALG00015030133 -name: CER1 copy 3 (chicken) +name: CER1 copy 2 (chicken) namespace: gene -def: "A protein coding gene CER1 copy 3 in chicken." [PRO:DNx] +def: "A protein coding gene CER1 copy 2 in chicken." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus @@ -327174,9 +328434,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:106341 -name: Atp5o (mouse) +name: Atp5po (mouse) namespace: gene -def: "A protein coding gene Atp5o in mouse." [PRO:DNx] +def: "A protein coding gene Atp5po in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -328182,9 +329442,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:107777 -name: Atp5j (mouse) +name: Atp5pf (mouse) namespace: gene -def: "A protein coding gene Atp5j in mouse." [PRO:DNx] +def: "A protein coding gene Atp5pf in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -329431,15 +330691,6 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus -[Term] -id: http://www.informatics.jax.org/marker/MGI:109406 -name: Reg3g (mouse) -namespace: gene -def: "A protein coding gene Reg3g in mouse." [PRO:DNx] -comment: Category=external. -is_a: SO:0001217 ! protein_coding_gene -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus - [Term] id: http://www.informatics.jax.org/marker/MGI:109433 name: Oaz1 (mouse) @@ -330025,6 +331276,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: http://www.informatics.jax.org/marker/MGI:1097165 +name: Nrg3 (mouse) +namespace: gene +def: "A protein coding gene Nrg3 in mouse." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: http://www.informatics.jax.org/marker/MGI:1097166 name: Tcl1 (mouse) @@ -330972,9 +332232,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:1196457 -name: Atpif1 (mouse) +name: Atp5if1 (mouse) namespace: gene -def: "A protein coding gene Atpif1 in mouse." [PRO:DNx] +def: "A protein coding gene Atp5if1 in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -332806,6 +334066,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: http://www.informatics.jax.org/marker/MGI:1329039 +name: Ccl17 (mouse) +namespace: gene +def: "A protein coding gene Ccl17 in mouse." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: http://www.informatics.jax.org/marker/MGI:1329041 name: Rngtt (mouse) @@ -333238,6 +334507,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: http://www.informatics.jax.org/marker/MGI:1335079 +name: Elf5 (mouse) +namespace: gene +def: "A protein coding gene Elf5 in mouse." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: http://www.informatics.jax.org/marker/MGI:1335091 name: Zbtb7a (mouse) @@ -333897,9 +335175,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:1340899 -name: Chil1 (mouse) +name: Chi3l1 (mouse) namespace: gene -def: "A protein coding gene Chil1 in mouse." [PRO:DNx] +def: "A protein coding gene Chi3l1 in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -335506,6 +336784,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: http://www.informatics.jax.org/marker/MGI:1349462 +name: Uba7 (mouse) +namespace: gene +def: "A protein coding gene Uba7 in mouse." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: http://www.informatics.jax.org/marker/MGI:1349471 name: St6galnac5 (mouse) @@ -336237,9 +337524,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:1353494 -name: Akr1b3 (mouse) +name: Akr1b1 (mouse) namespace: gene -def: "A protein coding gene Akr1b3 in mouse." [PRO:DNx] +def: "A protein coding gene Akr1b1 in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -336939,9 +338226,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:1858304 -name: Ctps (mouse) +name: Ctps1 (mouse) namespace: gene -def: "A protein coding gene Ctps in mouse." [PRO:DNx] +def: "A protein coding gene Ctps1 in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -339927,9 +341214,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:1914043 -name: Efcab1 (mouse) +name: Clxn (mouse) namespace: gene -def: "A protein coding gene Efcab1 in mouse." [PRO:DNx] +def: "A protein coding gene Clxn in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -343032,9 +344319,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:1916303 -name: 1810013L24Rik (mouse) +name: Hapstr1 (mouse) namespace: gene -def: "A protein coding gene 1810013L24Rik in mouse." [PRO:DNx] +def: "A protein coding gene Hapstr1 in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -343410,9 +344697,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:1916742 -name: 1700029I15Rik (mouse) +name: Frey1 (mouse) namespace: gene -def: "A protein coding gene 1700029I15Rik in mouse." [PRO:DNx] +def: "A protein coding gene Frey1 in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -346153,6 +347440,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: http://www.informatics.jax.org/marker/MGI:1921192 +name: Fam151b (mouse) +namespace: gene +def: "A protein coding gene Fam151b in mouse." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: http://www.informatics.jax.org/marker/MGI:1921249 name: Klhl14 (mouse) @@ -347658,9 +348954,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:1924023 -name: Wdyhv1 (mouse) +name: Ntaq1 (mouse) namespace: gene -def: "A protein coding gene Wdyhv1 in mouse." [PRO:DNx] +def: "A protein coding gene Ntaq1 in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -348846,9 +350142,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:1927170 -name: Spata5 (mouse) +name: Afg2a (mouse) namespace: gene -def: "A protein coding gene Spata5 in mouse." [PRO:DNx] +def: "A protein coding gene Afg2a in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -349035,9 +350331,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:1927558 -name: Atp5j2 (mouse) +name: Atp5mf (mouse) namespace: gene -def: "A protein coding gene Atp5j2 in mouse." [PRO:DNx] +def: "A protein coding gene Atp5mf in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -349258,6 +350554,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: http://www.informatics.jax.org/marker/MGI:1928483 +name: Stx5a (mouse) +namespace: gene +def: "A protein coding gene Stx5a in mouse." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: http://www.informatics.jax.org/marker/MGI:1928484 name: Nudt3 (mouse) @@ -350601,9 +351906,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:1934754 -name: Kars (mouse) +name: Kars1 (mouse) namespace: gene -def: "A protein coding gene Kars in mouse." [PRO:DNx] +def: "A protein coding gene Kars1 in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -351249,9 +352554,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:2139806 -name: Spg20 (mouse) +name: Spart (mouse) namespace: gene -def: "A protein coding gene Spg20 in mouse." [PRO:DNx] +def: "A protein coding gene Spart in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -352176,9 +353481,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:2148204 -name: Prrxl1 (mouse) +name: Drgx (mouse) namespace: gene -def: "A protein coding gene Prrxl1 in mouse." [PRO:DNx] +def: "A protein coding gene Drgx in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -355677,9 +356982,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:2444835 -name: Zadh2 (mouse) +name: Ptgr3 (mouse) namespace: gene -def: "A protein coding gene Zadh2 in mouse." [PRO:DNx] +def: "A protein coding gene Ptgr3 in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -357702,9 +359007,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:3036259 -name: Fam102b (mouse) +name: Eeig2 (mouse) namespace: gene -def: "A protein coding gene Fam102b in mouse." [PRO:DNx] +def: "A protein coding gene Eeig2 in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -357844,6 +359149,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: http://www.informatics.jax.org/marker/MGI:3041247 +name: Actmap (mouse) +namespace: gene +def: "A protein coding gene Actmap in mouse." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: http://www.informatics.jax.org/marker/MGI:3042250 name: Serpinb13 (mouse) @@ -358456,6 +359770,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: http://www.informatics.jax.org/marker/MGI:3647173 +name: Spag11b (mouse) +namespace: gene +def: "A protein coding gene Spag11b in mouse." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: http://www.informatics.jax.org/marker/MGI:3647547 name: Gimd1 (mouse) @@ -358582,6 +359905,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: http://www.informatics.jax.org/marker/MGI:3833469 +name: Tgfbr3l (mouse) +namespace: gene +def: "A protein coding gene Tgfbr3l in mouse." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: http://www.informatics.jax.org/marker/MGI:3837947 name: Yy2 (mouse) @@ -358800,9 +360132,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:87947 -name: Adssl1 (mouse) +name: Adss1 (mouse) namespace: gene -def: "A protein coding gene Adssl1 in mouse." [PRO:DNx] +def: "A protein coding gene Adss1 in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -359806,6 +361138,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: http://www.informatics.jax.org/marker/MGI:88439 +name: Cntf (mouse) +namespace: gene +def: "A protein coding gene Cntf in mouse." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: http://www.informatics.jax.org/marker/MGI:88445 name: Col10a1 (mouse) @@ -362049,9 +363390,9 @@ relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: http://www.informatics.jax.org/marker/MGI:96217 -name: Hprt (mouse) +name: Hprt1 (mouse) namespace: gene -def: "A protein coding gene Hprt in mouse." [PRO:DNx] +def: "A protein coding gene Hprt1 in mouse." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus @@ -365431,6 +366772,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +[Term] +id: http://www.informatics.jax.org/marker/MGI:98970 +name: Xbp1 (mouse) +namespace: gene +def: "A protein coding gene Xbp1 in mouse." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: http://www.informatics.jax.org/marker/MGI:98973 name: Xdh (mouse) @@ -366160,33 +367510,6 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus -[Term] -id: http://www.ncbi.nlm.nih.gov/gene/100858676 -name: MAX (chicken) -namespace: gene -def: "A protein coding gene MAX in chicken." [PRO:DNx] -comment: Category=external. -is_a: SO:0001217 ! protein_coding_gene -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus - -[Term] -id: http://www.ncbi.nlm.nih.gov/gene/101752182 -name: PMS2 (chicken) -namespace: gene -def: "A protein coding gene PMS2 in chicken." [PRO:DNx] -comment: Category=external. -is_a: SO:0001217 ! protein_coding_gene -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus - -[Term] -id: http://www.ncbi.nlm.nih.gov/gene/107055370 -name: JUND (chicken) -namespace: gene -def: "A protein coding gene JUND in chicken." [PRO:DNx] -comment: Category=external. -is_a: SO:0001217 ! protein_coding_gene -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus - [Term] id: http://www.ncbi.nlm.nih.gov/gene/140606 name: SELM (human) @@ -367096,15 +368419,6 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus -[Term] -id: http://www.ncbi.nlm.nih.gov/gene/395504 -name: GATM (chicken) -namespace: gene -def: "A protein coding gene GATM in chicken." [PRO:DNx] -comment: Category=external. -is_a: SO:0001217 ! protein_coding_gene -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus - [Term] id: http://www.ncbi.nlm.nih.gov/gene/395511 name: RDX (chicken) @@ -367294,15 +368608,6 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus -[Term] -id: http://www.ncbi.nlm.nih.gov/gene/395725 -name: DNASE1 (chicken) -namespace: gene -def: "A protein coding gene DNASE1 in chicken." [PRO:DNx] -comment: Category=external. -is_a: SO:0001217 ! protein_coding_gene -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus - [Term] id: http://www.ncbi.nlm.nih.gov/gene/395729 name: PCBD1 (chicken) @@ -367411,15 +368716,6 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus -[Term] -id: http://www.ncbi.nlm.nih.gov/gene/395843 -name: SIX6 (chicken) -namespace: gene -def: "A protein coding gene SIX6 in chicken." [PRO:DNx] -comment: Category=external. -is_a: SO:0001217 ! protein_coding_gene -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus - [Term] id: http://www.ncbi.nlm.nih.gov/gene/395844 name: ALDH1A2 (chicken) @@ -367627,15 +368923,6 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus -[Term] -id: http://www.ncbi.nlm.nih.gov/gene/396024 -name: ACTN4 (chicken) -namespace: gene -def: "A protein coding gene ACTN4 in chicken." [PRO:DNx] -comment: Category=external. -is_a: SO:0001217 ! protein_coding_gene -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus - [Term] id: http://www.ncbi.nlm.nih.gov/gene/396025 name: XDH (chicken) @@ -368518,6 +369805,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: http://www.ncbi.nlm.nih.gov/gene/396488 +name: CNTF (chicken) +namespace: gene +def: "A protein coding gene CNTF in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: http://www.ncbi.nlm.nih.gov/gene/396489 name: GLUL (chicken) @@ -368761,6 +370057,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: http://www.ncbi.nlm.nih.gov/gene/415344 +name: LINGO1 (chicken) +namespace: gene +def: "A protein coding gene LINGO1 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: http://www.ncbi.nlm.nih.gov/gene/415346 name: HMG20A (chicken) @@ -369220,6 +370525,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: http://www.ncbi.nlm.nih.gov/gene/417799 +name: NEL (chicken) +namespace: gene +def: "A protein coding gene NEL in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: http://www.ncbi.nlm.nih.gov/gene/417891 name: LUM (chicken) @@ -369688,6 +371002,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: http://www.ncbi.nlm.nih.gov/gene/420037 +name: EIF1 (chicken) +namespace: gene +def: "A protein coding gene EIF1 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: http://www.ncbi.nlm.nih.gov/gene/420049 name: MVP (chicken) @@ -369904,15 +371227,6 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus -[Term] -id: http://www.ncbi.nlm.nih.gov/gene/421105 -name: MAPRE2 (chicken) -namespace: gene -def: "A protein coding gene MAPRE2 in chicken." [PRO:DNx] -comment: Category=external. -is_a: SO:0001217 ! protein_coding_gene -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus - [Term] id: http://www.ncbi.nlm.nih.gov/gene/421109 name: UBE2V2 (chicken) @@ -370003,15 +371317,6 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus -[Term] -id: http://www.ncbi.nlm.nih.gov/gene/421431 -name: MDGA1 (chicken) -namespace: gene -def: "A protein coding gene MDGA1 in chicken." [PRO:DNx] -comment: Category=external. -is_a: SO:0001217 ! protein_coding_gene -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus - [Term] id: http://www.ncbi.nlm.nih.gov/gene/421462 name: TTC27 (chicken) @@ -370104,9 +371409,9 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] id: http://www.ncbi.nlm.nih.gov/gene/422108 -name: SLC9A3R1 (chicken) +name: NHERF1 (chicken) namespace: gene -def: "A protein coding gene SLC9A3R1 in chicken." [PRO:DNx] +def: "A protein coding gene NHERF1 in chicken." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus @@ -370579,6 +371884,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: http://www.ncbi.nlm.nih.gov/gene/425457 +name: MYBPC2 (chicken) +namespace: gene +def: "A protein coding gene MYBPC2 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: http://www.ncbi.nlm.nih.gov/gene/425619 name: YWHAZ (chicken) @@ -370716,9 +372030,9 @@ relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus [Term] id: http://www.ncbi.nlm.nih.gov/gene/427109 -name: FAM172A (chicken) +name: ARB2A (chicken) namespace: gene -def: "A protein coding gene FAM172A in chicken." [PRO:DNx] +def: "A protein coding gene ARB2A in chicken." [PRO:DNx] comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus @@ -370741,15 +372055,6 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus -[Term] -id: http://www.ncbi.nlm.nih.gov/gene/427256 -name: CARNMT1 (chicken) -namespace: gene -def: "A protein coding gene CARNMT1 in chicken." [PRO:DNx] -comment: Category=external. -is_a: SO:0001217 ! protein_coding_gene -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus - [Term] id: http://www.ncbi.nlm.nih.gov/gene/427308 name: ALDOB (chicken) @@ -370759,15 +372064,6 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus -[Term] -id: http://www.ncbi.nlm.nih.gov/gene/427331 -name: INIP (chicken) -namespace: gene -def: "A protein coding gene INIP in chicken." [PRO:DNx] -comment: Category=external. -is_a: SO:0001217 ! protein_coding_gene -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus - [Term] id: http://www.ncbi.nlm.nih.gov/gene/427379 name: NCBP1 (chicken) @@ -370786,15 +372082,6 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus -[Term] -id: http://www.ncbi.nlm.nih.gov/gene/427396 -name: DCAF12 (chicken) -namespace: gene -def: "A protein coding gene DCAF12 in chicken." [PRO:DNx] -comment: Category=external. -is_a: SO:0001217 ! protein_coding_gene -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus - [Term] id: http://www.ncbi.nlm.nih.gov/gene/427496 name: CCPG1 (chicken) @@ -370849,15 +372136,6 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus -[Term] -id: http://www.ncbi.nlm.nih.gov/gene/428251 -name: HYOU1 (chicken) -namespace: gene -def: "A protein coding gene HYOU1 in chicken." [PRO:DNx] -comment: Category=external. -is_a: SO:0001217 ! protein_coding_gene -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus - [Term] id: http://www.ncbi.nlm.nih.gov/gene/428264 name: IL10 (chicken) @@ -371065,15 +372343,6 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus -[Term] -id: http://www.ncbi.nlm.nih.gov/gene/770817 -name: DTD2 (chicken) -namespace: gene -def: "A protein coding gene DTD2 in chicken." [PRO:DNx] -comment: Category=external. -is_a: SO:0001217 ! protein_coding_gene -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus - [Term] id: http://www.ncbi.nlm.nih.gov/gene/771124 name: PHB2 (chicken) @@ -371119,6 +372388,15 @@ comment: Category=external. is_a: SO:0001217 ! protein_coding_gene relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: http://www.ncbi.nlm.nih.gov/gene/776775 +name: MYL11 (chicken) +namespace: gene +def: "A protein coding gene MYL11 in chicken." [PRO:DNx] +comment: Category=external. +is_a: SO:0001217 ! protein_coding_gene +relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus + [Term] id: http://www.ncbi.nlm.nih.gov/gene/84717 name: HDGFRP2 (human) diff --git a/pr_slim.owl b/pr_slim.owl index 1164480..a12b063 100644 --- a/pr_slim.owl +++ b/pr_slim.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2023-10-12") + +Annotation(owl:versionInfo "2024-05-05") Declaration(Class()) Declaration(Class()) @@ -85,6 +85,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -130,6 +131,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -148,6 +150,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -172,9 +175,12 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -201,7 +207,10 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -708,6 +717,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1481,6 +1493,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4346,6 +4359,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5928,7 +5942,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6307,7 +6320,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6525,6 +6537,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6965,6 +6978,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6996,12 +7011,18 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7019,6 +7040,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7907,7 +7931,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8152,6 +8175,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8255,7 +8279,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8360,6 +8383,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8521,11 +8545,13 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8625,6 +8651,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8729,7 +8756,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8888,6 +8914,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8916,6 +8943,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9694,6 +9722,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9999,6 +10028,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -10383,6 +10413,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -10771,6 +10802,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -11539,6 +11571,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -11579,6 +11612,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -12336,6 +12370,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -12598,6 +12633,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -13125,6 +13161,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -13200,6 +13237,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -13501,6 +13539,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -14180,7 +14219,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -15222,6 +15260,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -15731,6 +15770,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -15887,6 +15927,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -15905,6 +15946,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -17324,6 +17366,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -18614,6 +18657,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -18960,8 +19004,29 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -19520,7 +19585,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -19586,6 +19650,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -19895,6 +19960,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -19943,6 +20009,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -20195,6 +20262,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -21378,6 +21446,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -21723,6 +21792,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -22677,6 +22747,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -22745,6 +22816,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -22759,6 +22831,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -22895,6 +22968,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -23520,6 +23594,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -23601,9 +23676,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -23705,7 +23777,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -23727,7 +23798,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -23740,7 +23810,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -23764,7 +23833,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -23863,6 +23931,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -23890,6 +23959,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -23941,6 +24011,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -23993,6 +24064,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -24017,7 +24089,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -24028,7 +24099,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -24092,6 +24162,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -24110,19 +24181,15 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -24146,12 +24213,12 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) @@ -25092,6 +25159,16 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (MYL4 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene MYL4 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "CGNC:49822") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "MYL4 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (S100A10 (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene S100A10 in chicken.") @@ -25542,6 +25619,16 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (MAX (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene MAX in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "CGNC:64420") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "MAX (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (HIST1H4I (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene HIST1H4I in chicken.") @@ -25722,6 +25809,16 @@ AnnotationAssertion(rdfs:label SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (RARRES1 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene RARRES1 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "CGNC:7304") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "RARRES1 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (TWF1 (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene TWF1 in chicken.") @@ -25944,6 +26041,14 @@ AnnotationAssertion( "chemical entity") SubClassOf( ) +# Class: (heme) + +AnnotationAssertion( "A heme is any tetrapyrrolic chelate of iron.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:30413") +AnnotationAssertion(rdfs:label "heme") +SubClassOf( ) + # Class: (organic group) AnnotationAssertion( "Any substituent group or skeleton containing carbon.") @@ -25952,6 +26057,13 @@ AnnotationAssertion( "organic group") SubClassOf( ) +# Class: (proteinogenic amino-acid residue) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:33700") +AnnotationAssertion(rdfs:label "proteinogenic amino-acid residue") +SubClassOf( ) + # Class: (amino-acid residue) AnnotationAssertion(Annotation( "Dummy:dummy") "When two or more amino acids combine to form a peptide, the elements of water are removed, and what remains of each amino acid is called an amino-acid residue.") @@ -25970,6 +26082,13 @@ AnnotationAssertion( "organic amino compound") SubClassOf( ) +# Class: (L-asparagine residue) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:50347") +AnnotationAssertion(rdfs:label "L-asparagine residue") +SubClassOf( ) + # Class: (creatine kinase complex) AnnotationAssertion(Annotation( "GOC:hjd") "A protein complex having creatine kinase activity.") @@ -25988,11 +26107,11 @@ SubClassOf( (molecular_function) -AnnotationAssertion(Annotation( "GOC:pdt") "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.") +AnnotationAssertion(Annotation( "GOC:pdt") "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.") AnnotationAssertion( "molecular function") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0003674") -AnnotationAssertion(rdfs:comment "Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex.") +AnnotationAssertion(rdfs:comment "Note that, in addition to forming the root of the molecular function ontology, this term is recommended for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex.") AnnotationAssertion(rdfs:label "molecular_function") # Class: (glutathione transferase activity) @@ -26022,29 +26141,31 @@ AnnotationAssertion( "G protein-coupled receptor activity") SubClassOf( ) -# Class: (ion channel activity) +# Class: (monoatomic ion channel activity) -AnnotationAssertion(Annotation( "GOC:cy") Annotation( "GOC:mtg_transport") Annotation( "GOC:pr") Annotation( "ISBN:0815340729") "Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).") +AnnotationAssertion(Annotation( "GOC:cy") Annotation( "GOC:mtg_transport") Annotation( "GOC:pr") Annotation( "ISBN:0815340729") "Enables the facilitated diffusion of a monoatomic ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).") +AnnotationAssertion( "ion channel activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0005216") -AnnotationAssertion(rdfs:label "ion channel activity") +AnnotationAssertion(rdfs:label "monoatomic ion channel activity") SubClassOf( ) -# Class: (intracellular sodium activated potassium channel activity) +# Class: (intracellular sodium-activated potassium channel activity) AnnotationAssertion(Annotation( "GOC:mtg_transport") Annotation( "PMID:12628167") "Enables the transmembrane transfer of potassium by a channel that opens in response to stimulus by a sodium ion or ions. Transport by a channel involves facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism. Sodium activated potassium channels have distinctive properties, including a large single channel conductance, subconductance states, and a block of single channel currents at positive potentials, similar to inward rectification.") +AnnotationAssertion( "intracellular sodium activated potassium channel activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0005228") -AnnotationAssertion(rdfs:label "intracellular sodium activated potassium channel activity") +AnnotationAssertion(rdfs:label "intracellular sodium-activated potassium channel activity") SubClassOf( ) -# Class: (voltage-gated ion channel activity) +# Class: (voltage-gated monoatomic ion channel activity) AnnotationAssertion(Annotation( "GOC:mtg_transport") Annotation( "ISBN:0198506732") Annotation( "ISBN:0815340729") "Enables the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.") AnnotationAssertion( "voltage gated ion channel activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0005244") -AnnotationAssertion(rdfs:label "voltage-gated ion channel activity") +AnnotationAssertion(rdfs:label "voltage-gated monoatomic ion channel activity") SubClassOf( ) # Class: (voltage-gated potassium channel activity) @@ -26101,11 +26222,11 @@ SubClassOf( (biological_process) -AnnotationAssertion(Annotation( "GOC:pdt") "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.") +AnnotationAssertion(Annotation( "GOC:pdt") "A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.") AnnotationAssertion( "biological process") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0008150") -AnnotationAssertion(rdfs:comment "Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.") +AnnotationAssertion(rdfs:comment "Note that, in addition to forming the root of the biological process ontology, this term is recommended for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.") AnnotationAssertion(rdfs:label "biological_process") # Class: (water channel activity) @@ -26134,13 +26255,13 @@ AnnotationAssertion( "calcium-activated potassium channel activity") SubClassOf( ) -# Class: (ligand-gated ion channel activity) +# Class: (ligand-gated monoatomic ion channel activity) AnnotationAssertion(Annotation( "GOC:mtg_transport") Annotation( "ISBN:0815340729") "Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts.") AnnotationAssertion(Annotation( "GOC:bf") Annotation( "GOC:sart") "ionotropic receptor activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0015276") -AnnotationAssertion(rdfs:label "ligand-gated ion channel activity") +AnnotationAssertion(rdfs:label "ligand-gated monoatomic ion channel activity") SubClassOf( ) # Class: (protein processing) @@ -26191,7 +26312,7 @@ SubClassOf( (platelet-derived growth factor complex) -AnnotationAssertion(Annotation( "GOC:bhm") Annotation( "PMID:11331882") "A protein complex consisting of two chains of platelet-derived growth factor (PDGF) subunits. PDGF dimers bind to PDGF receptors in the plasma membrane and induce receptor dimerisation and activation. PDGFs are involved in a wide variety of signalling processes. PDGFs are found in all vertebrates where at least 2 different chains (A and B) exist. In human (and other mammals), four types of PDGF chains (A, B, C, and D) are known which form five different dimers (AA, AB, BB, CC and DD).") +AnnotationAssertion(Annotation( "GOC:bhm") Annotation( "PMID:11331882") "A protein complex consisting of two chains of platelet-derived growth factor (PDGF) subunits. PDGF dimers bind to PDGF receptors in the plasma membrane and induce receptor dimerization and activation. PDGFs are involved in a wide variety of signaling processes. PDGFs are found in all vertebrates where at least 2 different chains (A and B) exist. In human (and other mammals), four types of PDGF chains (A, B, C, and D) are known which form five different dimers (AA, AB, BB, CC and DD).") AnnotationAssertion( "cellular_component") AnnotationAssertion( "PDGF complex") AnnotationAssertion( "GO:1990265") @@ -26199,6 +26320,15 @@ AnnotationAssertion(rdfs:comment "An AnnotationAssertion(rdfs:label "platelet-derived growth factor complex") SubClassOf( ) +# Class: (N-asparaginyl-glycosylphosphatidylinositolethanolamine) + +AnnotationAssertion(Annotation( ) "GPIAsn") +AnnotationAssertion( "PSI-MOD") +AnnotationAssertion( "MOD:00167") +AnnotationAssertion(rdfs:label "N-asparaginyl-glycosylphosphatidylinositolethanolamine") +SubClassOf( ) +SubClassOf( ) + # Class: (glycoconjugated residue) AnnotationAssertion( "PSI-MOD") @@ -26206,6 +26336,21 @@ AnnotationAssertion( "glycoconjugated residue") SubClassOf( ) +# Class: (glycosylphosphatidylinositolated residue) + +AnnotationAssertion(Annotation( ) "GPIRes") +AnnotationAssertion( "PSI-MOD") +AnnotationAssertion( "MOD:00818") +AnnotationAssertion(rdfs:label "glycosylphosphatidylinositolated residue") +SubClassOf( ) + +# Class: (modified L-asparagine residue) + +AnnotationAssertion( "PSI-MOD") +AnnotationAssertion( "MOD:00903") +AnnotationAssertion(rdfs:label "modified L-asparagine residue") +SubClassOf( ) + # Class: (ubiquitinylated lysine) AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "UbiqLys") @@ -26291,7 +26436,7 @@ AnnotationAssertion(rdfs:comment " AnnotationAssertion(rdfs:label "protein") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -27946,17 +28091,17 @@ SubClassOf( (Na(+)/H(+) exchange regulatory cofactor NHE-RF1) -AnnotationAssertion(Annotation( "PRO:CNA") "A Na(+)/H(+) exchange regulatory cofactor with ERM-binding domain that is a translation product of the human SLC9A3R1 gene or a 1:1 ortholog thereof. It contains two copies of the PDZ domain at the N terminus and an EBP50 domain at the C-terminus. The latter allows interaction with FERM domains, resulting in the activation of ERM proteins (PR:000001030), with subsequent cytoskeletal modulation and cellular growth control.") +AnnotationAssertion(Annotation( "PRO:CNA") "A Na(+)/H(+) exchange regulatory cofactor with ERM-binding domain that is a translation product of the human NHERF1 gene or a 1:1 ortholog thereof. It contains two copies of the PDZ domain at the N terminus and an EBP50 domain at the C-terminus. The latter allows interaction with FERM domains, resulting in the activation of ERM proteins (PR:000001030), with subsequent cytoskeletal modulation and cellular growth control.") AnnotationAssertion( "EBP50") AnnotationAssertion( "NHERF-1") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "SLC9A3R1") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "NHERF1") AnnotationAssertion( "ezrin-radixin-moesin-binding phosphoprotein 50") AnnotationAssertion( "regulatory cofactor of Na(+)/H(+) exchanger") AnnotationAssertion( "sodium-hydrogen exchanger regulatory factor 1") AnnotationAssertion( "solute carrier family 9 isoform A3 regulatory factor 1") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "NHERF") -AnnotationAssertion(Annotation( ) "NHERF1") +AnnotationAssertion(Annotation( ) "SLC9A3R1") AnnotationAssertion( "PR:000001041") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "Na(+)/H(+) exchange regulatory cofactor NHE-RF1") @@ -28113,7 +28258,6 @@ SubClassOf( (interleukin-17) AnnotationAssertion(Annotation( "PMID:17982105") Annotation( "PMID:18280574") "A protein that is a T cell-derived cytokine that may play an important role in the initiation or maintenance of the proinflammatory response. Except for IL-17B, all other IL-17 family members are homodimers containing five highly conserved cysteine residues forming characteristic cystein-knot structure, similar to that found in the TGF-beta-like cystine-knot (PR:000000008). This class consists of six cytokines. Among them, interleukin 17A (IL-17) and IL-17F are expressed by a novel subset of CD4+ helper T (Th) cells and play a critical role in inflammation and autoimmunity. On the other hand, IL-17E, also called IL-25, has been associated with allergic responses.") -AnnotationAssertion( "PANTHER:PTHR21295") AnnotationAssertion( "PIRSF:PIRSF003430") AnnotationAssertion( "IL17") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "fam:IL-17") @@ -30252,6 +30396,8 @@ AnnotationAssertion(Annotation( "gp80-LNGFR") AnnotationAssertion( "low affinity neurotrophin receptor p75NTR") AnnotationAssertion( "low-affinity nerve growth factor receptor") +AnnotationAssertion( "low-affinity nerve growth factor receptor p75NGFR") +AnnotationAssertion( "low-affinity nerve growth factor receptor p75NGR") AnnotationAssertion( "p75 ICD") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "TNFRSF16") @@ -30734,14 +30880,14 @@ SubClassOf( (interleukin-10) -AnnotationAssertion(Annotation( "PANTHER:PTHR11585:SF1") Annotation( "PRO:JAN") "A class 2 cytokine, IL-10 type that is a translation product of the human IL10 gene or a 1:1 ortholog thereof. Active interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells. Structurally, IL-10 is a protein of about 160 amino acids that contains four conserved cysteines involved in disulfide bonds.") +AnnotationAssertion(Annotation( "PRO:JAN") "A class 2 cytokine, IL-10 type that is a translation product of the human IL10 gene or a 1:1 ortholog thereof.") AnnotationAssertion( "CSIF") AnnotationAssertion( "IL-10") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "IL10") AnnotationAssertion( "cytokine synthesis inhibitory factor") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000001471") -AnnotationAssertion(rdfs:comment "Category=gene.") +AnnotationAssertion(rdfs:comment "Category=gene. Note: Active interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells. Structurally, IL-10 is a protein of about 160 amino acids that contains four conserved cysteines involved in disulfide bonds.") AnnotationAssertion(rdfs:label "interleukin-10") AnnotationAssertion( ) SubClassOf( ) @@ -31391,7 +31537,6 @@ SubClassOf( (prominin) AnnotationAssertion(Annotation( "InterPro:IPR008795") Annotation( "PMID:11467842") "A protein with core architecture consisting of one Prominin (Pfam:PF05478) domain. The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and human prominin and prominin-like 1 are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain.") -AnnotationAssertion( "PANTHER:PTHR22730") AnnotationAssertion( "PIRSF:PIRSF017831") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000001785") @@ -34313,6 +34458,62 @@ AnnotationAssertion(rdfs:label "ly AnnotationAssertion( ) SubClassOf( ) +# Class: (CD14 molecule cleaved 1 soluble form) + +AnnotationAssertion(Annotation( "PMID:7519994") "A CD14 molecule, signal peptide removed form that lacks the GPI-anchor and has been processed by proteolytic cleavage to yield the N-terminal domain with extra C-terminal residues as compared to cleaved 2 form.") +AnnotationAssertion(Annotation( "PMID:7519994") "uCD14") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "CD14/Clv:1/soluble") +AnnotationAssertion( "monocyte differentiation antigen CD14 isoform 1 cleaved 1") +AnnotationAssertion( "sCD14 56kd form") +AnnotationAssertion(Annotation( "PMID:7522157") "sCD14 beta") +AnnotationAssertion( "sCD14 high M(r) form") +AnnotationAssertion( "protein") +AnnotationAssertion( "Monocyte differentiation antigen CD14, urinary form") +AnnotationAssertion( "PR:000002146") +AnnotationAssertion(rdfs:comment "Category=modification.") +AnnotationAssertion(rdfs:label "CD14 molecule cleaved 1 soluble form") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (CD14 molecule cleaved 2 soluble form) + +AnnotationAssertion(Annotation( "PMID:2779588") "A CD14 molecule cleaved 2 that lacks the GPI-anchor.") +AnnotationAssertion(Annotation( "PRO:CNA") "CD14 molecule cleaved 2") +AnnotationAssertion(Annotation( "PRO:DNx") "uCD14") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "CD14/Clv:2/soluble") +AnnotationAssertion(Annotation( "Reactome:R-HSA-166025") "Secreted form of CD14") +AnnotationAssertion( "monocyte differentiation antigen CD14 isoform 1 cleaved 2") +AnnotationAssertion( "sCD14 48kd form") +AnnotationAssertion(Annotation( "PMID:1880416") "sCD14 C form") +AnnotationAssertion(Annotation( "PMID:7522157") "sCD14 alpha") +AnnotationAssertion( "sCD14 low M(r) form") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000002147") +AnnotationAssertion(rdfs:comment "Category=modification. Note: This form appears to derive from release of the GPI-anchored form, mCD14.") +AnnotationAssertion(rdfs:label "CD14 molecule cleaved 2 soluble form") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (CD14 molecule cleaved 2 GPI-anchored form) + +AnnotationAssertion(Annotation( "PMID:3385210") Annotation( "PRO:CNA") "A CD14 molecule cleaved 2 that is the mature membrane-bound form of this protein. UniProtKB:P08571, 20-345, Asn-345, MOD:00167.") +AnnotationAssertion(Annotation( "PRO:CNA") "CD14 molecule cleaved and GPI-anchored 1") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "CD14/Clv:2/anchored") +AnnotationAssertion(Annotation( "Reactome:R-HSA-166033") "GPI-anchored form of CD14") +AnnotationAssertion( "Monocyte differentiation antigen CD14, membrane-bound form") +AnnotationAssertion( "monocyte differentiation antigen CD14 isoform 1 cleaved and GPI-anchored 1") +AnnotationAssertion( "protein") +AnnotationAssertion( "mCD14") +AnnotationAssertion( "PR:000002149") +AnnotationAssertion(rdfs:comment "Category=modification.") +AnnotationAssertion(rdfs:label "CD14 molecule cleaved 2 GPI-anchored form") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (NAD(P)(+)--arginine ADP-ribosyltransferase) AnnotationAssertion(Annotation( "InterPro:IPR000768") Annotation( "PMID:8703012") "A protein with core architecture consisting of an NAD:arginine ADP-ribosyltransferase (Pfam:PF01129) domain. Mono-ADP-ribosylation is a post-translational modification of proteins in which the ADP-ribose moiety of NAD is transferred to proteins. A family of mono(ADP-ribosyl) transferases exists in vertebrates that transfer ADP-ribose to arginine.") @@ -34949,8 +35150,7 @@ SubClassOf( (NFAT protein) -AnnotationAssertion(Annotation( "PANTHER:PTHR12533") "A protein that contains a Rel homology domain (RHD) (Pfam:PF00554) followed by an IPT/TIG domain (Pfam:PF01833).") -AnnotationAssertion( "PANTHER:PTHR12533") +AnnotationAssertion(Annotation( "PRO:WCB") "A protein that contains a Rel homology domain (RHD) (Pfam:PF00554) followed by an IPT/TIG domain (Pfam:PF01833).") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000003112") AnnotationAssertion(rdfs:comment "Category=family.") @@ -35735,7 +35935,6 @@ SubClassOf( (Hsp70 family chaperone) AnnotationAssertion(Annotation( "PRO:CNA") Annotation( "Pfam:PF00012") "A protein that is a stand alone version of the Hsp70 protein (Pfam:PF00012) domain, which comprises two major regions: an N-terminal ATP-binding domain and a C-terminal substrate-binding domain.") -AnnotationAssertion( "PANTHER:PTHR19375") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000003425") AnnotationAssertion(rdfs:comment "Category=family.") @@ -37068,13 +37267,13 @@ SubClassOf( (all-trans-retinol dehydrogenase [NAD(+)] ADH4) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human ADH4 gene or a 1:1 ortholog thereof.") -AnnotationAssertion( "ADH2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "ADH4") AnnotationAssertion( "alcohol dehydrogenase 4") AnnotationAssertion( "alcohol dehydrogenase II") AnnotationAssertion( "alcohol dehydrogenase class II") AnnotationAssertion( "alcohol dehydrogenase class II pi chain") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( ) "ADH2") AnnotationAssertion( "PR:000003770") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "all-trans-retinol dehydrogenase [NAD(+)] ADH4") @@ -37906,19 +38105,19 @@ AnnotationAssertion(rdfs:label "re AnnotationAssertion( ) SubClassOf( ) -# Class: (aldehyde dehydrogenase family 1 member A3) +# Class: (retinaldehyde dehydrogenase 3) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human ALDH1A3 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "ALDH1A3") AnnotationAssertion( "RALDH-3") AnnotationAssertion( "RalDH3") AnnotationAssertion( "aldehyde dehydrogenase 6") -AnnotationAssertion( "retinaldehyde dehydrogenase 3") +AnnotationAssertion( "aldehyde dehydrogenase family 1 member A3") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "ALDH6") AnnotationAssertion( "PR:000003922") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "aldehyde dehydrogenase family 1 member A3") +AnnotationAssertion(rdfs:label "retinaldehyde dehydrogenase 3") AnnotationAssertion( ) SubClassOf( ) @@ -37991,17 +38190,18 @@ AnnotationAssertion(rdfs:label "su AnnotationAssertion( ) SubClassOf( ) -# Class: (methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial) +# Class: (methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human ALDH6A1 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "ALDH6A1") AnnotationAssertion( "aldehyde dehydrogenase family 6 member A1") AnnotationAssertion( "malonate-semialdehyde dehydrogenase [acylating]") +AnnotationAssertion( "methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "MMSDH") AnnotationAssertion( "PR:000003930") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial") +AnnotationAssertion(rdfs:label "methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial") AnnotationAssertion( ) SubClassOf( ) @@ -45759,6 +45959,7 @@ SubClassOf( "PRO:DNx") "A protein that is a translation product of the human CISD1 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "CISD1") AnnotationAssertion( "MitoNEET") +AnnotationAssertion( "cysteine transaminase CISD1") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "C10orf70") AnnotationAssertion(Annotation( ) "D10Ertd214e") @@ -46519,6 +46720,17 @@ AnnotationAssertion(rdfs:label "CB AnnotationAssertion( ) SubClassOf( ) +# Class: (ciliary neurotrophic factor) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human CNTF gene or a 1:1 ortholog thereof.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "CNTF") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000005663") +AnnotationAssertion(rdfs:comment "Category=gene.") +AnnotationAssertion(rdfs:label "ciliary neurotrophic factor") +AnnotationAssertion( ) +SubClassOf( ) + # Class: (contactin-3) AnnotationAssertion(Annotation( "PRO:DNx") "A contactin that is a translation product of the human CNTN3 gene or a 1:1 ortholog thereof.") @@ -47991,7 +48203,9 @@ AnnotationAssertion( "PRO:DNx") Annotation( ) "CSF1") AnnotationAssertion( "M-CSF") AnnotationAssertion( "MCSF") +AnnotationAssertion( "PG-M-CSF") AnnotationAssertion( "lanimostim") +AnnotationAssertion( "proteoglycan macrophage colony-stimulating factor") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "Csfm") AnnotationAssertion( "PR:000005930") @@ -49264,6 +49478,7 @@ AnnotationAssertion( "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "BCATE2") +AnnotationAssertion(Annotation( ) "BCKDHE2") AnnotationAssertion( "PR:000006300") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial") @@ -49465,6 +49680,7 @@ AnnotationAssertion( "DCUN1 domain-containing protein 3") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "DCUN1D3") AnnotationAssertion( "defective in cullin neddylation protein 1-like protein 3") +AnnotationAssertion( "squamous cell carcinoma-related oncogene 3") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "SCCRO3") AnnotationAssertion( "PR:000006332") @@ -50969,6 +51185,8 @@ SubClassOf( "PRO:DNx") "A protein that is a translation product of the human DNM1 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "DNM1") +AnnotationAssertion( "dynamin") +AnnotationAssertion( "dynamin I") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "DNM") AnnotationAssertion(Annotation( ) "Kiaa4093") @@ -52177,7 +52395,7 @@ AnnotationAssertion(rdfs:label "ex AnnotationAssertion( ) SubClassOf( ) -# Class: (vesicular, overexpressed in cancer, prosurvival protein 1) +# Class: (WW domain binding protein VOPP1) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human VOPP1 gene or a 1:1 ortholog thereof.") AnnotationAssertion( "ECop") @@ -52185,12 +52403,13 @@ AnnotationAssertion( "PRO:DNx") Annotation( ) "VOPP1") AnnotationAssertion( "glioblastoma-amplified secreted protein") AnnotationAssertion( "putative NF-kappa-B-activating protein 055N") +AnnotationAssertion( "vesicular, overexpressed in cancer, prosurvival protein 1") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "ECOP") AnnotationAssertion(Annotation( ) "GASP") AnnotationAssertion( "PR:000006882") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "vesicular, overexpressed in cancer, prosurvival protein 1") +AnnotationAssertion(rdfs:label "WW domain binding protein VOPP1") AnnotationAssertion( ) SubClassOf( ) @@ -52747,16 +52966,18 @@ AnnotationAssertion(rdfs:label "eu AnnotationAssertion( ) SubClassOf( ) -# Class: (translation initiation factor eIF-2B subunit alpha) +# Class: (translation initiation factor eIF2B subunit alpha) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human EIF2B1 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "EIF2B1") AnnotationAssertion( "eIF-2B GDP-GTP exchange factor subunit alpha") +AnnotationAssertion( "eIF2B GDP-GTP exchange factor subunit alpha") +AnnotationAssertion( "translation initiation factor eIF-2B subunit alpha") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "EIF2BA") AnnotationAssertion( "PR:000006962") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "translation initiation factor eIF-2B subunit alpha") +AnnotationAssertion(rdfs:label "translation initiation factor eIF2B subunit alpha") AnnotationAssertion( ) SubClassOf( ) @@ -52828,6 +53049,7 @@ AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "EIF2S1") AnnotationAssertion( "eIF-2-alpha") AnnotationAssertion( "eIF-2alpha") +AnnotationAssertion( "eIF2-alpha") AnnotationAssertion( "eukaryotic translation initiation factor 2 subunit alpha") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "EIF2A") @@ -52843,6 +53065,7 @@ SubClassOf( "PRO:DNx") "A protein that is a translation product of the human EIF2S2 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "EIF2S2") AnnotationAssertion( "eIF-2-beta") +AnnotationAssertion( "eIF2-beta") AnnotationAssertion( "eukaryotic translation initiation factor 2 subunit beta") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "EIF2B") @@ -54906,18 +55129,20 @@ AnnotationAssertion(rdfs:label "Fa AnnotationAssertion( ) SubClassOf( ) -# Class: (Fas apoptotic inhibitory molecule 3) +# Class: (immunoglobulin mu Fc receptor) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human FCMR gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "FCMR") +AnnotationAssertion( "Fas apoptotic inhibitory molecule 3") AnnotationAssertion( "IgM Fc fragment receptor") +AnnotationAssertion( "IgM FcR") AnnotationAssertion( "regulator of Fas-induced apoptosis Toso") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "FAIM3") AnnotationAssertion(Annotation( ) "TOSO") AnnotationAssertion( "PR:000007329") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "Fas apoptotic inhibitory molecule 3") +AnnotationAssertion(rdfs:label "immunoglobulin mu Fc receptor") AnnotationAssertion( ) SubClassOf( ) @@ -57025,7 +57250,7 @@ AnnotationAssertion(rdfs:label "gl AnnotationAssertion( ) SubClassOf( ) -# Class: (growth arrest and DNA damage-inducible proteins-interacting protein 1) +# Class: (large ribosomal subunit protein mL64) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human GADD45GIP1 gene or a 1:1 ortholog thereof.") AnnotationAssertion( "39S ribosomal protein L59, mitochondrial") @@ -57035,6 +57260,7 @@ AnnotationAssertion( "PRO:DNx") Annotation( ) "GADD45GIP1") AnnotationAssertion( "MRP-L59") AnnotationAssertion( "PLINP-1") +AnnotationAssertion( "growth arrest and DNA damage-inducible proteins-interacting protein 1") AnnotationAssertion( "p53-responsive gene 6 protein") AnnotationAssertion( "papillomavirus L2-interacting nuclear protein 1") AnnotationAssertion( "protein") @@ -57043,7 +57269,7 @@ AnnotationAssertion(Annotation( ) "PRG6") AnnotationAssertion( "PR:000007790") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "growth arrest and DNA damage-inducible proteins-interacting protein 1") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein mL64") AnnotationAssertion( ) SubClassOf( ) @@ -58700,7 +58926,7 @@ AnnotationAssertion(rdfs:label "gu AnnotationAssertion( ) SubClassOf( ) -# Class: (receptor of activated protein C kinase 1) +# Class: (small ribosomal subunit protein RACK1) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RACK1 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") "p205") @@ -58711,6 +58937,7 @@ AnnotationAssertion( "guanine nucleotide-binding protein subunit beta-like protein 12.3") AnnotationAssertion( "lung cancer oncogene 7 protein") AnnotationAssertion( "receptor for activated C kinase") +AnnotationAssertion( "receptor of activated protein C kinase 1") AnnotationAssertion( "receptor of activated protein kinase C 1") AnnotationAssertion(Annotation( "PRO:DAN") "HLC-7") AnnotationAssertion( "protein") @@ -58720,7 +58947,7 @@ AnnotationAssertion(Annotation( ) "PIG21") AnnotationAssertion( "PR:000008098") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "receptor of activated protein C kinase 1") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein RACK1") AnnotationAssertion( ) SubClassOf( ) @@ -58731,6 +58958,7 @@ AnnotationAssertion(Annotation( "UDP-GlcNAc-2-epimerase/ManAc kinase") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "GLCNE") +AnnotationAssertion(Annotation( ) "IBM2") AnnotationAssertion(Annotation( ) "Uae1") AnnotationAssertion( "PR:000008102") AnnotationAssertion(rdfs:comment "Category=gene.") @@ -60564,15 +60792,17 @@ AnnotationAssertion(rdfs:label "E3 AnnotationAssertion( ) SubClassOf( ) -# Class: (hepatocyte cell adhesion molecule) +# Class: (hepatic and glial cell adhesion molecule) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human HEPACAM gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "HEPACAM") +AnnotationAssertion( "glialCAM") +AnnotationAssertion( "hepatocyte cell adhesion molecule") AnnotationAssertion( "protein hepaCAM") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000008510") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "hepatocyte cell adhesion molecule") +AnnotationAssertion(rdfs:label "hepatic and glial cell adhesion molecule") AnnotationAssertion( ) SubClassOf( ) @@ -60834,6 +61064,7 @@ AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "HHEX") AnnotationAssertion( "homeobox protein HEX") AnnotationAssertion( "homeobox protein PRH") +AnnotationAssertion( "proline-rich homeodomain protein") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "HEX") AnnotationAssertion(Annotation( ) "PRH") @@ -60857,15 +61088,17 @@ AnnotationAssertion(rdfs:label "he AnnotationAssertion( ) SubClassOf( ) -# Class: (HERV-H LTR-associating protein 3) +# Class: (putative uncharacterized protein ANKRD13C-DT) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human HHLA3 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "HERV-H LTR-associating protein 3") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "HHLA3") AnnotationAssertion( "human endogenous retrovirus-H long terminal repeat-associating protein 3") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( ) "ANKRD13C-DT") AnnotationAssertion( "PR:000008545") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "HERV-H LTR-associating protein 3") +AnnotationAssertion(rdfs:label "putative uncharacterized protein ANKRD13C-DT") AnnotationAssertion( ) SubClassOf( ) @@ -62498,6 +62731,7 @@ AnnotationAssertion( "MRP-L58") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "MRPL58") AnnotationAssertion( "digestion substraction 1") +AnnotationAssertion( "peptidyl-tRNA hydrolase ICT1, mitochondrial") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "DS1") AnnotationAssertion(Annotation( ) "ICT1") @@ -66139,6 +66373,7 @@ SubClassOf( "PRO:DNx") "A protein that is a translation product of the human LAT gene or a 1:1 ortholog thereof.") AnnotationAssertion( "36 kDa phospho-tyrosine adapter protein") +AnnotationAssertion( "36 kDa phosphotyrosine adapter protein") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "LAT") AnnotationAssertion( "p36-38") AnnotationAssertion( "pp36") @@ -70608,9 +70843,10 @@ AnnotationAssertion(rdfs:label "rR AnnotationAssertion( ) SubClassOf( ) -# Class: (39S ribosomal protein L1, mitochondrial) +# Class: (large ribosomal subunit protein uL1m) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human MRPL1 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "39S ribosomal protein L1, mitochondrial") AnnotationAssertion( "L1mt") AnnotationAssertion( "MRP-L1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "MRPL1") @@ -70618,13 +70854,14 @@ AnnotationAssertion( ) "BM-022") AnnotationAssertion( "PR:000010571") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L1, mitochondrial") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL1m") AnnotationAssertion( ) SubClassOf( ) -# Class: (39S ribosomal protein L10, mitochondrial) +# Class: (large ribosomal subunit protein uL10m) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human MRPL10 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "39S ribosomal protein L10, mitochondrial") AnnotationAssertion( "39S ribosomal protein L8, mitochondrial") AnnotationAssertion( "L10mt") AnnotationAssertion( "L8mt") @@ -70636,13 +70873,14 @@ AnnotationAssertion(Annotation( ) "RPML8") AnnotationAssertion( "PR:000010572") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L10, mitochondrial") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL10m") AnnotationAssertion( ) SubClassOf( ) -# Class: (39S ribosomal protein L12, mitochondrial) +# Class: (large ribosomal subunit protein bL12m) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human MRPL12 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "39S ribosomal protein L12, mitochondrial") AnnotationAssertion( "5c5-2") AnnotationAssertion( "L12mt") AnnotationAssertion( "MRP-L12") @@ -70652,13 +70890,14 @@ AnnotationAssertion(Annotation( ) "RPML12") AnnotationAssertion( "PR:000010574") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L12, mitochondrial") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL12m") AnnotationAssertion( ) SubClassOf( ) -# Class: (39S ribosomal protein L14, mitochondrial) +# Class: (large ribosomal subunit protein uL14m) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human MRPL14 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "39S ribosomal protein L14, mitochondrial") AnnotationAssertion( "L14mt") AnnotationAssertion( "MRP-L14") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "MRPL14") @@ -70670,13 +70909,14 @@ AnnotationAssertion(Annotation( ) "RPML32") AnnotationAssertion( "PR:000010576") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L14, mitochondrial") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL14m") AnnotationAssertion( ) SubClassOf( ) -# Class: (39S ribosomal protein L2, mitochondrial) +# Class: (large ribosomal subunit protein uL2m) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human MRPL2 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "39S ribosomal protein L2, mitochondrial") AnnotationAssertion( "L2mt") AnnotationAssertion( "MRP-L2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "MRPL2") @@ -70684,13 +70924,14 @@ AnnotationAssertion( ) "CGI-22") AnnotationAssertion( "PR:000010582") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L2, mitochondrial") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL2m") AnnotationAssertion( ) SubClassOf( ) -# Class: (39S ribosomal protein L21, mitochondrial) +# Class: (large ribosomal subunit protein bL21m) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human MRPL21 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "39S ribosomal protein L21, mitochondrial") AnnotationAssertion( "L21mt") AnnotationAssertion( "MRP-L21") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "MRPL21") @@ -70698,13 +70939,14 @@ AnnotationAssertion( ) "D9Wsu149") AnnotationAssertion( "PR:000010584") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L21, mitochondrial") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL21m") AnnotationAssertion( ) SubClassOf( ) -# Class: (39S ribosomal protein L28, mitochondrial) +# Class: (large ribosomal subunit protein bL28m) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human MRPL28 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "39S ribosomal protein L28, mitochondrial") AnnotationAssertion( "L28mt") AnnotationAssertion( "MRP-L28") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "MRPL28") @@ -70714,13 +70956,14 @@ AnnotationAssertion( ) "MAAT1") AnnotationAssertion( "PR:000010589") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L28, mitochondrial") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL28m") AnnotationAssertion( ) SubClassOf( ) -# Class: (39S ribosomal protein L32, mitochondrial) +# Class: (large ribosomal subunit protein bL32m) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human MRPL32 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "39S ribosomal protein L32, mitochondrial") AnnotationAssertion( "L32mt") AnnotationAssertion( "MRP-L32") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "MRPL32") @@ -70730,13 +70973,14 @@ AnnotationAssertion(Annotation( ) "Heg1") AnnotationAssertion( "PR:000010592") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L32, mitochondrial") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL32m") AnnotationAssertion( ) SubClassOf( ) -# Class: (39S ribosomal protein L33, mitochondrial) +# Class: (large ribosomal subunit protein bL33m) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human MRPL33 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "39S ribosomal protein L33, mitochondrial") AnnotationAssertion( "L33mt") AnnotationAssertion( "MRP-L33") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "MRPL33") @@ -70744,26 +70988,28 @@ AnnotationAssertion( ) "C2orf1") AnnotationAssertion( "PR:000010593") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L33, mitochondrial") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL33m") AnnotationAssertion( ) SubClassOf( ) -# Class: (39S ribosomal protein L34, mitochondrial) +# Class: (large ribosomal subunit protein bL34m) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human MRPL34 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "39S ribosomal protein L34, mitochondrial") AnnotationAssertion( "L34mt") AnnotationAssertion( "MRP-L34") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "MRPL34") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000010594") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L34, mitochondrial") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL34m") AnnotationAssertion( ) SubClassOf( ) -# Class: (39S ribosomal protein L38, mitochondrial) +# Class: (large ribosomal subunit protein mL38) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human MRPL38 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "39S ribosomal protein L38, mitochondrial") AnnotationAssertion( "L38mt") AnnotationAssertion( "MRP-L38") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "MRPL38") @@ -70771,26 +71017,28 @@ AnnotationAssertion( ) "HSPC262") AnnotationAssertion( "PR:000010598") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L38, mitochondrial") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein mL38") AnnotationAssertion( ) SubClassOf( ) -# Class: (39S ribosomal protein L52, mitochondrial) +# Class: (large ribosomal subunit protein mL52) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human MRPL52 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "39S ribosomal protein L52, mitochondrial") AnnotationAssertion( "L52mt") AnnotationAssertion( "MRP-L52") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "MRPL52") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000010613") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L52, mitochondrial") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein mL52") AnnotationAssertion( ) SubClassOf( ) -# Class: (39S ribosomal protein L55, mitochondrial) +# Class: (large ribosomal subunit protein mL55) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human MRPL55 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "39S ribosomal protein L55, mitochondrial") AnnotationAssertion( "L55mt") AnnotationAssertion( "MRP-L55") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "MRPL55") @@ -70798,20 +71046,21 @@ AnnotationAssertion( ) "UNQ5835/PRO19675") AnnotationAssertion( "PR:000010616") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L55, mitochondrial") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein mL55") AnnotationAssertion( ) SubClassOf( ) -# Class: (28S ribosomal protein S14, mitochondrial) +# Class: (small ribosomal subunit protein uS14m) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human MRPS14 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "28S ribosomal protein S14, mitochondrial") AnnotationAssertion( "MRP-S14") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "MRPS14") AnnotationAssertion( "S14mt") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000010621") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "28S ribosomal protein S14, mitochondrial") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein uS14m") AnnotationAssertion( ) SubClassOf( ) @@ -73529,28 +73778,30 @@ AnnotationAssertion(rdfs:label "ni AnnotationAssertion( ) SubClassOf( ) -# Class: (nodal modulator 1) +# Class: (BOS complex subunit NOMO1) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human NOMO1 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "NOMO1") +AnnotationAssertion( "nodal modulator 1") AnnotationAssertion( "pM5 protein") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "PM5") AnnotationAssertion( "PR:000011317") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "nodal modulator 1") +AnnotationAssertion(rdfs:label "BOS complex subunit NOMO1") AnnotationAssertion( ) SubClassOf( ) -# Class: (nodal modulator 2) +# Class: (BOS complex subunit NOMO2) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human NOMO2 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "NOMO2") +AnnotationAssertion( "nodal modulator 2") AnnotationAssertion( "pM5 protein 2") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000011318") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "nodal modulator 2") +AnnotationAssertion(rdfs:label "BOS complex subunit NOMO2") AnnotationAssertion( ) SubClassOf( ) @@ -73588,7 +73839,7 @@ AnnotationAssertion(rdfs:label "nu AnnotationAssertion( ) SubClassOf( ) -# Class: (nitric oxide synthase, endothelial) +# Class: (nitric oxide synthase 3) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human NOS3 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") "constitutive NOS") @@ -73600,11 +73851,12 @@ AnnotationAssertion( "cNOS") AnnotationAssertion( "eNOS") AnnotationAssertion( "endothelial NOS") +AnnotationAssertion( "nitric oxide synthase, endothelial") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "Ecnos") AnnotationAssertion( "PR:000011328") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "nitric oxide synthase, endothelial") +AnnotationAssertion(rdfs:label "nitric oxide synthase 3") AnnotationAssertion( ) SubClassOf( ) @@ -74004,7 +74256,7 @@ AnnotationAssertion(rdfs:label "nu AnnotationAssertion( ) SubClassOf( ) -# Class: (nuclear receptor subfamily 4 group A member 1) +# Class: (nuclear receptor subfamily 4 immunity group A member 1) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human NR4A1 gene or a 1:1 ortholog thereof.") AnnotationAssertion( "IUPHARobj:629") @@ -74025,7 +74277,7 @@ AnnotationAssertion(Annotation( ) "Nur77") AnnotationAssertion( "PR:000011408") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "nuclear receptor subfamily 4 group A member 1") +AnnotationAssertion(rdfs:label "nuclear receptor subfamily 4 immunity group A member 1") AnnotationAssertion( ) SubClassOf( ) @@ -74735,9 +74987,12 @@ SubClassOf( (diphosphoinositol polyphosphate phosphohydrolase 1) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human NUDT3 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "Ap6A hydrolase") AnnotationAssertion( "DIPP-1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "NUDT3") AnnotationAssertion( "diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 1") +AnnotationAssertion( "diadenosine hexaphosphate hydrolase") +AnnotationAssertion( "endopolyphosphatase") AnnotationAssertion( "muDIPP1") AnnotationAssertion( "nucleoside diphosphate-linked moiety X motif 3") AnnotationAssertion( "nudix motif 3") @@ -77114,31 +77369,35 @@ AnnotationAssertion(rdfs:label "du AnnotationAssertion( ) SubClassOf( ) -# Class: (cAMP-specific 3',5'-cyclic phosphodiesterase 4A) +# Class: (3',5'-cyclic-AMP phosphodiesterase 4A) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human PDE4A gene or a 1:1 ortholog thereof.") AnnotationAssertion( "IUPHARobj:1300") AnnotationAssertion( "PDE46") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PDE4A") +AnnotationAssertion( "cAMP-specific 3',5'-cyclic phosphodiesterase 4A") +AnnotationAssertion( "cAMP-specific phosphodiesterase 4A") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "DPDE2") AnnotationAssertion( "PR:000012472") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "cAMP-specific 3',5'-cyclic phosphodiesterase 4A") +AnnotationAssertion(rdfs:label "3',5'-cyclic-AMP phosphodiesterase 4A") AnnotationAssertion( ) SubClassOf( ) -# Class: (cAMP-specific 3',5'-cyclic phosphodiesterase 4C) +# Class: (3',5'-cyclic-AMP phosphodiesterase 4C) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human PDE4C gene or a 1:1 ortholog thereof.") AnnotationAssertion( "IUPHARobj:1302") AnnotationAssertion( "PDE21") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PDE4C") +AnnotationAssertion( "cAMP-specific 3',5'-cyclic phosphodiesterase 4C") +AnnotationAssertion( "cAMP-specific phosphodiesterase 4C") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "DPDE1") AnnotationAssertion( "PR:000012474") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "cAMP-specific 3',5'-cyclic phosphodiesterase 4C") +AnnotationAssertion(rdfs:label "3',5'-cyclic-AMP phosphodiesterase 4C") AnnotationAssertion( ) SubClassOf( ) @@ -79368,6 +79627,9 @@ SubClassOf( (DNA polymerase beta) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human POLB gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "5'-dRP lyase") +AnnotationAssertion( "5'-deoxyribose-phosphate lyase") +AnnotationAssertion( "AP lyase") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "POLB") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000012962") @@ -80299,18 +80561,19 @@ AnnotationAssertion(rdfs:label "pa AnnotationAssertion( ) SubClassOf( ) -# Class: (pancreatic prohormone) +# Class: (pancreatic polypeptide prohormone) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human PPY gene or a 1:1 ortholog thereof.") AnnotationAssertion( "PP") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PPY") AnnotationAssertion( "obinepitide") AnnotationAssertion( "pancreatic polypeptide") +AnnotationAssertion( "pancreatic prohormone") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "PNP") AnnotationAssertion( "PR:000013164") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "pancreatic prohormone") +AnnotationAssertion(rdfs:label "pancreatic polypeptide prohormone") AnnotationAssertion( ) SubClassOf( ) @@ -83607,9 +83870,10 @@ AnnotationAssertion(rdfs:label "ca AnnotationAssertion( ) SubClassOf( ) -# Class: (2'-deoxynucleoside 5'-phosphate N-hydrolase 1) +# Class: (5-hydroxymethyl-dUMP N-hydrolase) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human DNPH1 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "2'-deoxynucleoside 5'-phosphate N-hydrolase 1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "DNPH1") AnnotationAssertion( "c-Myc-responsive protein Rcl") AnnotationAssertion( "protein") @@ -83617,7 +83881,7 @@ AnnotationAssertion(Annotation( ) "RCL") AnnotationAssertion( "PR:000013836") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "2'-deoxynucleoside 5'-phosphate N-hydrolase 1") +AnnotationAssertion(rdfs:label "5-hydroxymethyl-dUMP N-hydrolase") AnnotationAssertion( ) SubClassOf( ) @@ -83830,27 +84094,14 @@ AnnotationAssertion(rdfs:label "re AnnotationAssertion( ) SubClassOf( ) -# Class: (regenerating islet-derived protein 3-gamma) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human REG3G gene or a 1:1 ortholog thereof.") -AnnotationAssertion( "PAP IB") -AnnotationAssertion( "PAP-1B") -AnnotationAssertion( "REG-3-gamma") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "REG3G") -AnnotationAssertion( "Reg III-gamma") -AnnotationAssertion( "pancreatitis-associated protein 1B") -AnnotationAssertion( "pancreatitis-associated protein 3") -AnnotationAssertion( "pancreatitis-associated protein IB") -AnnotationAssertion( "regenerating islet-derived protein III-gamma") +# Class: (obsolete regenerating islet-derived protein 3-gamma) + +AnnotationAssertion(Annotation( "PRO:DNx") "OBSOLETE. A protein that is a translation product of the human REG3G gene or a 1:1 ortholog thereof.") AnnotationAssertion( "protein") -AnnotationAssertion(Annotation( ) "PAP1B") -AnnotationAssertion(Annotation( ) "Pap3") -AnnotationAssertion(Annotation( ) "UNQ429/PRO162") AnnotationAssertion( "PR:000013872") -AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "regenerating islet-derived protein 3-gamma") -AnnotationAssertion( ) -SubClassOf( ) +AnnotationAssertion(rdfs:comment "Category (was) gene. Made obsolete because this is one of a set of paralogs (that is, no 1:1 orthology is possible). Had archetype PR:Q6UW15.") +AnnotationAssertion(rdfs:label "obsolete regenerating islet-derived protein 3-gamma") +AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) # Class: (transcription factor RelB) @@ -85137,78 +85388,82 @@ AnnotationAssertion(rdfs:label "ri AnnotationAssertion( ) SubClassOf( ) -# Class: (60S ribosomal protein L11) +# Class: (eukaryotic-type large ribosomal subunit protein uL5) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RPL11 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "60S ribosomal protein L11") AnnotationAssertion( "CLL-associated antigen KW-12") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPL11") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000014190") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L11") -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "eukaryotic-type large ribosomal subunit protein uL5") SubClassOf( ) -# Class: (60S ribosomal protein L12) +# Class: (eukaryotic-type large ribosomal subunit protein uL11) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RPL12 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "60S ribosomal protein L12") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPL12") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000014191") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L12") -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "eukaryotic-type large ribosomal subunit protein uL11") SubClassOf( ) -# Class: (60S ribosomal protein L26-like 1) +# Class: (ribosomal protein uL24-like) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RPL26L1 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "60S ribosomal protein L26-like 1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPL26L1") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "RPL26P1") AnnotationAssertion( "PR:000014207") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L26-like 1") +AnnotationAssertion(rdfs:label "ribosomal protein uL24-like") AnnotationAssertion( ) SubClassOf( ) -# Class: (60S ribosomal protein L30) +# Class: (large ribosomal subunit protein eL30) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RPL30 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "60S ribosomal protein L30") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPL30") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000014213") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L30") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein eL30") AnnotationAssertion( ) SubClassOf( ) -# Class: (60S ribosomal protein L38) +# Class: (large ribosomal subunit protein eL38) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RPL38 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "60S ribosomal protein L38") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPL38") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000014224") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L38") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein eL38") AnnotationAssertion( ) SubClassOf( ) -# Class: (60S ribosomal protein L5) +# Class: (eukaryotic-type large ribosomal subunit protein uL18) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RPL5 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "60S ribosomal protein L5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPL5") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "MSTP030") AnnotationAssertion( "PR:000014230") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L5") -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "eukaryotic-type large ribosomal subunit protein uL18") SubClassOf( ) -# Class: (60S acidic ribosomal protein P2) +# Class: (large ribosomal subunit protein P2) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RPLP2 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "60S acidic ribosomal protein P2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPLP2") AnnotationAssertion( "renal carcinoma antigen NY-REN-44") AnnotationAssertion( "protein") @@ -85216,7 +85471,7 @@ AnnotationAssertion(Annotation( ) "RPP2") AnnotationAssertion( "PR:000014239") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "60S acidic ribosomal protein P2") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein P2") AnnotationAssertion( ) SubClassOf( ) @@ -85291,79 +85546,84 @@ AnnotationAssertion(rdfs:label "re AnnotationAssertion( ) SubClassOf( ) -# Class: (40S ribosomal protein S12) +# Class: (small ribosomal subunit protein eS12) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RPS12 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "40S ribosomal protein S12") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS12") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000014253") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S12") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS12") AnnotationAssertion( ) SubClassOf( ) -# Class: (40S ribosomal protein S14) +# Class: (eukaryotic-type small ribosomal subunit protein uS11) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RPS14 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "40S ribosomal protein S14") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS14") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "PRO2640") AnnotationAssertion( "PR:000014255") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S14") -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "eukaryotic-type small ribosomal subunit protein uS11") SubClassOf( ) -# Class: (40S ribosomal protein S19) +# Class: (small ribosomal subunit protein eS19) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RPS19 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "40S ribosomal protein S19") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS19") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000014261") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S19") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS19") AnnotationAssertion( ) SubClassOf( ) -# Class: (40S ribosomal protein S20) +# Class: (eukaryotic-type small ribosomal subunit protein uS10) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RPS20 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "40S ribosomal protein S20") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS20") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000014264") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S20") -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "eukaryotic-type small ribosomal subunit protein uS10") SubClassOf( ) -# Class: (40S ribosomal protein S25) +# Class: (small ribosomal subunit protein eS25) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RPS25 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "40S ribosomal protein S25") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS25") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000014268") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S25") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS25") AnnotationAssertion( ) SubClassOf( ) -# Class: (ubiquitin-40S ribosomal protein S27a) +# Class: (ubiquitin-ribosomal protein eS31 fusion protein) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RPS27A gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS27A") AnnotationAssertion( "ubiquitin carboxyl extension protein 80") +AnnotationAssertion(Annotation( "PRO:DAN") "ubiquitin-40S ribosomal protein S27a") AnnotationAssertion( "protein") AnnotationAssertion( "40S ribosomal protein S27a") AnnotationAssertion(Annotation( ) "UBA80") AnnotationAssertion(Annotation( ) "UBCEP1") AnnotationAssertion( "PR:000014271") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "ubiquitin-40S ribosomal protein S27a") +AnnotationAssertion(rdfs:label "ubiquitin-ribosomal protein eS31 fusion protein") SubClassOf( ) -# Class: (40S ribosomal protein S3a) +# Class: (small ribosomal subunit protein eS1) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RPS3A gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "40S ribosomal protein S3a") AnnotationAssertion( "Fte-1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS3A") AnnotationAssertion( "protein TU-11") @@ -85373,13 +85633,14 @@ AnnotationAssertion(Annotation( ) "MFTL") AnnotationAssertion( "PR:000014276") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S3a") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS1") AnnotationAssertion( ) SubClassOf( ) -# Class: (40S ribosomal protein S4, X isoform) +# Class: (small ribosomal subunit protein eS4, X isoform) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human RPS4X gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "40S ribosomal protein S4, X isoform") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS4X") AnnotationAssertion( "SCR10") AnnotationAssertion( "single copy abundant mRNA protein") @@ -85389,19 +85650,19 @@ AnnotationAssertion(Annotation( ) "SCAR") AnnotationAssertion( "PR:000014277") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S4, X isoform") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS4, X isoform") AnnotationAssertion( ) SubClassOf( ) -# Class: (40S ribosomal protein S5) +# Class: (eukaryotic-type small ribosomal subunit protein uS7) AnnotationAssertion(Annotation( "PRO:DAN") "A protein that is a translation product of the human RPS5 gene, a 1:1 ortholog thereof, or pro-orthologs thereof.") +AnnotationAssertion(Annotation( "PRO:DAN") "40S ribosomal protein S5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS5") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000014280") AnnotationAssertion(rdfs:comment "Category=gene. Pro-orthology refers to, in this case, after-speciation gene duplication in the non-human species (aka 1:many orthology).") -AnnotationAssertion(rdfs:label "40S ribosomal protein S5") -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "eukaryotic-type small ribosomal subunit protein uS7") SubClassOf( ) # Class: (ribosomal protein S6 kinase alpha-1) @@ -86717,6 +86978,7 @@ SubClassOf( "PRO:DNx") "A protein that is a translation product of the human SEC13 gene or a 1:1 ortholog thereof.") AnnotationAssertion( "GATOR complex protein SEC13") +AnnotationAssertion( "GATOR2 complex protein SEC13") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "SEC13") AnnotationAssertion( "SEC13-like protein 1") AnnotationAssertion( "SEC13-related protein") @@ -88819,20 +89081,23 @@ AnnotationAssertion(rdfs:label "pr AnnotationAssertion( ) SubClassOf( ) -# Class: (neutral and basic amino acid transport protein rBAT) +# Class: (amino acid transporter heavy chain SLC3A1) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human SLC3A1 gene or a 1:1 ortholog thereof.") AnnotationAssertion( "IUPHARobj:889") AnnotationAssertion( "B(0,+)-type amino acid transport protein") AnnotationAssertion( "D2h") -AnnotationAssertion( "NBAT") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "SLC3A1") +AnnotationAssertion( "b(0,+)-type amino acid transporter-related heavy chain") +AnnotationAssertion( "neutral and basic amino acid transport protein") +AnnotationAssertion( "neutral and basic amino acid transport protein rBAT") AnnotationAssertion( "solute carrier family 3 member 1") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( ) "NBAT") AnnotationAssertion(Annotation( ) "RBAT") AnnotationAssertion( "PR:000015137") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "neutral and basic amino acid transport protein rBAT") +AnnotationAssertion(rdfs:label "amino acid transporter heavy chain SLC3A1") AnnotationAssertion( ) SubClassOf( ) @@ -90116,19 +90381,22 @@ AnnotationAssertion(rdfs:label "sp AnnotationAssertion( ) SubClassOf( ) -# Class: (ribosome biogenesis protein SPATA5) +# Class: (ATPase family gene 2 protein homolog A) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human SPATA5 gene or a 1:1 ortholog thereof.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human AFG2A gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "AFG2 AAA ATPase homolog A") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "AFG2A") AnnotationAssertion( "ATPase family protein 2 homolog") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "SPATA5") +AnnotationAssertion( "ribosome biogenesis protein SPATA5") AnnotationAssertion( "spermatogenesis-associated factor protein") AnnotationAssertion( "spermatogenesis-associated protein 5") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "AFG2") AnnotationAssertion(Annotation( ) "SPAF") +AnnotationAssertion(Annotation( ) "SPATA5") AnnotationAssertion( "PR:000015492") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "ribosome biogenesis protein SPATA5") +AnnotationAssertion(rdfs:label "ATPase family gene 2 protein homolog A") AnnotationAssertion( ) SubClassOf( ) @@ -91677,6 +91945,18 @@ AnnotationAssertion(rdfs:label "sy AnnotationAssertion( ) SubClassOf( ) +# Class: (syntaxin-5) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human STX5 gene or a 1:1 ortholog thereof.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "STX5") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( ) "STX5A") +AnnotationAssertion( "PR:000015797") +AnnotationAssertion(rdfs:comment "Category=gene.") +AnnotationAssertion(rdfs:label "syntaxin-5") +AnnotationAssertion( ) +SubClassOf( ) + # Class: (syntaxin-6) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human STX6 gene or a 1:1 ortholog thereof.") @@ -95747,16 +96027,17 @@ AnnotationAssertion(rdfs:comment " AnnotationAssertion(rdfs:label "protein TSPEAR") SubClassOf( ) -# Class: (protein TSSC4) +# Class: (U5 small nuclear ribonucleoprotein TSSC4) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human TSSC4 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "TSSC4") +AnnotationAssertion( "protein TSSC4") AnnotationAssertion( "tumor-suppressing STF cDNA 4 protein") AnnotationAssertion( "tumor-suppressing subchromosomal transferable fragment candidate gene 4 protein") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000016769") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "protein TSSC4") +AnnotationAssertion(rdfs:label "U5 small nuclear ribonucleoprotein TSSC4") AnnotationAssertion( ) SubClassOf( ) @@ -95996,6 +96277,7 @@ SubClassOf( "PRO:DNx") "A protein that is a translation product of the human TMX1 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "TMX1") +AnnotationAssertion( "protein disulfide-isomerase TMX1") AnnotationAssertion( "thioredoxin domain-containing protein 1") AnnotationAssertion( "transmembrane Trx-related protein") AnnotationAssertion( "protein") @@ -96217,7 +96499,10 @@ SubClassOf( "PRO:DNx") "A protein that is a translation product of the human UAP1 gene or a 1:1 ortholog thereof.") AnnotationAssertion( "AGX") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UAP1") +AnnotationAssertion( "UDP-N-acetylgalactosamine pyrophosphorylase") +AnnotationAssertion( "UDP-N-acetylglucosamine pyrophosphorylase") AnnotationAssertion( "antigen X") +AnnotationAssertion( "protein-pyrophosphorylation enzyme") AnnotationAssertion( "sperm-associated antigen 2") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "SPAG2") @@ -96279,7 +96564,7 @@ AnnotationAssertion(rdfs:label "ub AnnotationAssertion( ) SubClassOf( ) -# Class: (ubiquitin-60S ribosomal protein L40) +# Class: (ubiquitin-ribosomal protein eL40 fusion protein) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human UBA52 gene or a 1:1 ortholog thereof.") AnnotationAssertion( "CEP52") @@ -96290,7 +96575,7 @@ AnnotationAssertion( ) "UBCEP2") AnnotationAssertion( "PR:000016954") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "ubiquitin-60S ribosomal protein L40") +AnnotationAssertion(rdfs:label "ubiquitin-ribosomal protein eL40 fusion protein") SubClassOf( ) # Class: (ubiquitin-like modifier-activating enzyme 6) @@ -96438,6 +96723,7 @@ AnnotationAssertion( "ubiquitin-protein ligase B") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "RAD6B") +AnnotationAssertion(Annotation( ) "UBCH1") AnnotationAssertion( "PR:000016966") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "ubiquitin-conjugating enzyme E2 B") @@ -98025,6 +98311,8 @@ AnnotationAssertion( "PRO:DNx") Annotation( ) "VCP") AnnotationAssertion( "valosin-containing protein") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( ) "HEL-220") +AnnotationAssertion(Annotation( ) "HEL-S-70") AnnotationAssertion( "PR:000017273") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "transitional endoplasmic reticulum ATPase") @@ -98099,18 +98387,20 @@ AnnotationAssertion(rdfs:label "vi AnnotationAssertion( ) SubClassOf( ) -# Class: (vascular endothelial growth factor A) +# Class: (vascular endothelial growth factor A, long form) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human VEGFA gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "L-VEGF") AnnotationAssertion( "VEGF-A") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "VEGFA") AnnotationAssertion( "VPF") +AnnotationAssertion( "vascular endothelial growth factor A") AnnotationAssertion( "vascular permeability factor") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "VEGF") AnnotationAssertion( "PR:000017284") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "vascular endothelial growth factor A") +AnnotationAssertion(rdfs:label "vascular endothelial growth factor A, long form") AnnotationAssertion( ) SubClassOf( ) @@ -98934,6 +99224,7 @@ SubClassOf( (X-box-binding protein 1) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human XBP1 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "TREB-5") AnnotationAssertion( "Tax-responsive element-binding protein 5") AnnotationAssertion( "Tax-responsive element-binding protein 5 homolog") AnnotationAssertion( "XBP-1") @@ -100520,7 +100811,7 @@ SubClassOf( ObjectSomeValuesFrom( (Na(+)/H(+) exchange regulatory cofactor NHE-RF1, initiator methionine removed form) AnnotationAssertion(Annotation( "PRO:DNx") "A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 that has had the initiator methionine removed.") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "SLC9A3R1/InitMet-") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "NHERF1/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000018331") AnnotationAssertion(rdfs:comment "Category=modification.") @@ -101596,6 +101887,7 @@ SubClassOf( ObjectSomeValuesFrom( (CD14 molecule, signal peptide removed form) AnnotationAssertion(Annotation( "PRO:DNx") "A CD14 molecule that has had the signal peptide removed.") +AnnotationAssertion( "PR:000025460") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "CD14/SigPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000018574") @@ -103169,14 +103461,14 @@ EquivalentClasses( ObjectIntersecti SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (aldehyde dehydrogenase family 1 member A3, initiator methionine removed form) +# Class: (retinaldehyde dehydrogenase 3, initiator methionine removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "An aldehyde dehydrogenase family 1 member A3 that has had the initiator methionine removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A retinaldehyde dehydrogenase 3 that has had the initiator methionine removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "ALDH1A3/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000018952") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "aldehyde dehydrogenase family 1 member A3, initiator methionine removed form") +AnnotationAssertion(rdfs:label "retinaldehyde dehydrogenase 3, initiator methionine removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -107611,14 +107903,14 @@ EquivalentClasses( ObjectIntersecti SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (receptor of activated protein C kinase 1, initiator methionine removed form) +# Class: (small ribosomal subunit protein RACK1, initiator methionine removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "A receptor of activated protein C kinase 1 that has had the initiator methionine removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A small ribosomal subunit protein RACK1 that has had the initiator methionine removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RACK1/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000020022") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "receptor of activated protein C kinase 1, initiator methionine removed form") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein RACK1, initiator methionine removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -108006,7 +108298,7 @@ SubClassOf( ObjectSomeValuesFrom( (hemoglobin subunit alpha, initiator methionine removed form) AnnotationAssertion(Annotation( "PRO:DNx") "A hemoglobin subunit alpha that has had the initiator methionine removed.") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "HBA2/InitMet-") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "HBA/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000020113") AnnotationAssertion(rdfs:comment "Category=modification.") @@ -110633,14 +110925,14 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (nitric oxide synthase, endothelial, initiator methionine removed form) +# Class: (nitric oxide synthase 3, initiator methionine removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "A nitric oxide synthase, endothelial that has had the initiator methionine removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A nitric oxide synthase 3 that has had the initiator methionine removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "NOS3/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000020762") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "nitric oxide synthase, endothelial, initiator methionine removed form") +AnnotationAssertion(rdfs:label "nitric oxide synthase 3, initiator methionine removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -111980,26 +112272,26 @@ EquivalentClasses( ObjectIntersecti SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (pancreatic prohormone, signal peptide removed form) +# Class: (pancreatic polypeptide prohormone, signal peptide removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "A pancreatic prohormone that has had the signal peptide removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A pancreatic polypeptide prohormone that has had the signal peptide removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PPY/SigPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000021065") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "pancreatic prohormone, signal peptide removed form") +AnnotationAssertion(rdfs:label "pancreatic polypeptide prohormone, signal peptide removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (pancreatic prohormone proteolytic cleavage product) +# Class: (pancreatic polypeptide prohormone proteolytic cleavage product) -AnnotationAssertion(Annotation( "PRO:DNx") "A pancreatic prohormone that has been processed by proteolytic cleavage.") +AnnotationAssertion(Annotation( "PRO:DNx") "A pancreatic polypeptide prohormone that has been processed by proteolytic cleavage.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PPY/ClvPrd") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000021066") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "pancreatic prohormone proteolytic cleavage product") +AnnotationAssertion(rdfs:label "pancreatic polypeptide prohormone proteolytic cleavage product") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -112798,18 +113090,6 @@ EquivalentClasses( ObjectIntersecti SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (regenerating islet-derived protein 3-gamma, signal peptide removed form) - -AnnotationAssertion(Annotation( "PRO:DNx") "A regenerating islet-derived protein 3-gamma that has had the signal peptide removed.") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "REG3G/SigPep-") -AnnotationAssertion( "protein") -AnnotationAssertion( "PR:000021253") -AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "regenerating islet-derived protein 3-gamma, signal peptide removed form") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (tumor necrosis factor receptor superfamily member 19L, signal peptide removed form) AnnotationAssertion(Annotation( "PRO:DNx") "A tumor necrosis factor receptor superfamily member 19L that has had the signal peptide removed.") @@ -112895,26 +113175,26 @@ EquivalentClasses( ObjectIntersecti SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L11, initiator methionine removed form) +# Class: (eukaryotic-type large ribosomal subunit protein uL5, initiator methionine removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "A 60S ribosomal protein L11 that has had the initiator methionine removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A eukaryotic-type large ribosomal subunit protein uL5 that has had the initiator methionine removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPL11/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000021287") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L11, initiator methionine removed form") +AnnotationAssertion(rdfs:label "eukaryotic-type large ribosomal subunit protein uL5, initiator methionine removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L5, initiator methionine removed form) +# Class: (eukaryotic-type large ribosomal subunit protein uL18, initiator methionine removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "A 60S ribosomal protein L5 that has had the initiator methionine removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A eukaryotic-type large ribosomal subunit protein uL18 that has had the initiator methionine removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPL5/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000021305") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L5, initiator methionine removed form") +AnnotationAssertion(rdfs:label "eukaryotic-type large ribosomal subunit protein uL18, initiator methionine removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -112943,98 +113223,98 @@ EquivalentClasses( ObjectIntersecti SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S12, initiator methionine removed form) +# Class: (small ribosomal subunit protein eS12, initiator methionine removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "A 40S ribosomal protein S12 that has had the initiator methionine removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A small ribosomal subunit protein eS12 that has had the initiator methionine removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS12/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000021316") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S12, initiator methionine removed form") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS12, initiator methionine removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S14, initiator methionine removed form) +# Class: (eukaryotic-type small ribosomal subunit protein uS11, initiator methionine removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "A 40S ribosomal protein S14 that has had the initiator methionine removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A eukaryotic-type small ribosomal subunit protein uS11 that has had the initiator methionine removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS14/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000021317") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S14, initiator methionine removed form") +AnnotationAssertion(rdfs:label "eukaryotic-type small ribosomal subunit protein uS11, initiator methionine removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S19, initiator methionine removed form) +# Class: (small ribosomal subunit protein eS19, initiator methionine removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "A 40S ribosomal protein S19 that has had the initiator methionine removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A small ribosomal subunit protein eS19 that has had the initiator methionine removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS19/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000021323") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S19, initiator methionine removed form") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS19, initiator methionine removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S20, initiator methionine removed form) +# Class: (eukaryotic-type small ribosomal subunit protein uS10, initiator methionine removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "A 40S ribosomal protein S20 that has had the initiator methionine removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A eukaryotic-type small ribosomal subunit protein uS10 that has had the initiator methionine removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS20/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000021325") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S20, initiator methionine removed form") +AnnotationAssertion(rdfs:label "eukaryotic-type small ribosomal subunit protein uS10, initiator methionine removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S3a, initiator methionine removed form) +# Class: (small ribosomal subunit protein eS1, initiator methionine removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "A 40S ribosomal protein S3a that has had the initiator methionine removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A small ribosomal subunit protein eS1 that has had the initiator methionine removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS3A/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000021331") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S3a, initiator methionine removed form") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS1, initiator methionine removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S4, X isoform, initiator methionine removed form) +# Class: (small ribosomal subunit protein eS4, X isoform, initiator methionine removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "A 40S ribosomal protein S4, X isoform that has had the initiator methionine removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A small ribosomal subunit protein eS4, X isoform that has had the initiator methionine removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS4X/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000021332") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S4, X isoform, initiator methionine removed form") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS4, X isoform, initiator methionine removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S5, initiator methionine removed form) +# Class: (eukaryotic-type small ribosomal subunit protein uS7, initiator methionine removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "A 40S ribosomal protein S5 that has had the initiator methionine removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A eukaryotic-type small ribosomal subunit protein uS7 that has had the initiator methionine removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS5/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000021333") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S5, initiator methionine removed form") +AnnotationAssertion(rdfs:label "eukaryotic-type small ribosomal subunit protein uS7, initiator methionine removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S5 proteolytic cleavage product) +# Class: (eukaryotic-type small ribosomal subunit protein uS7 proteolytic cleavage product) -AnnotationAssertion(Annotation( "PRO:DNx") "A 40S ribosomal protein S5 that has been processed by proteolytic cleavage.") +AnnotationAssertion(Annotation( "PRO:DNx") "A eukaryotic-type small ribosomal subunit protein uS7 that has been processed by proteolytic cleavage.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPS5/ClvPrd") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000021334") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S5 proteolytic cleavage product") +AnnotationAssertion(rdfs:label "eukaryotic-type small ribosomal subunit protein uS7 proteolytic cleavage product") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -114950,14 +115230,14 @@ EquivalentClasses( ObjectIntersecti SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (vascular endothelial growth factor A, signal peptide removed form) +# Class: (vascular endothelial growth factor A, long form, signal peptide removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "A vascular endothelial growth factor A that has had the signal peptide removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A vascular endothelial growth factor A, long form that has had the signal peptide removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "VEGFA/SigPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000021820") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "vascular endothelial growth factor A, signal peptide removed form") +AnnotationAssertion(rdfs:label "vascular endothelial growth factor A, long form, signal peptide removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -116222,7 +116502,6 @@ SubClassOf( (solute carrier organic anion transporter family member) AnnotationAssertion(Annotation( "PRO:DAN") "A protein that contains an OATP domain (Pfam:PF03137) and a Kazal-type serine protease inhibitor domain (Pfam:PF07648).") -AnnotationAssertion( "PANTHER:PTHR11388") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000025823") AnnotationAssertion(rdfs:comment "Category=family.") @@ -116358,7 +116637,6 @@ SubClassOf( ObjectSomeValuesFrom( (serpin) AnnotationAssertion(Annotation( "InterPro:IPR000215") Annotation( "PRO:CNA") "A protein that is primarily known as an irreversible serine protease inhibitor active against S1, S8 and C14 peptidases. There are both extra- and intra-cellular serpins, which are found in all groups of organisms with the notable exception of fungi. Serpin contains a copy of the Serpin (Pfam:PF00079) domain.") -AnnotationAssertion( "PANTHER:PTHR11461") AnnotationAssertion( "PIRSF:PIRSF001630") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000025875") @@ -116590,6 +116868,7 @@ AnnotationAssertion(Annotation( "Reactome:R-HSA-174188") AnnotationAssertion(Annotation(rdfs:label "PR:000026372 located_in GO:0005829") "Reactome:R-HSA-174244") AnnotationAssertion(Annotation(rdfs:label "PR:000026372 located_in GO:0005654") "Reactome:R-HSA-8852110") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O00762, 2-179") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hUBE2C/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000082560") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O00762-1, 2-179") @@ -116609,6 +116888,7 @@ AnnotationAssertion(Annotation(rdfs:label "PR:000026403 located_in GO:0005829") AnnotationAssertion(Annotation(rdfs:label "PR:000026403 located_in GO:0000139") "Reactome:R-HSA-6808739") AnnotationAssertion(Annotation(rdfs:label "PR:000026403 located_in GO:0030133") "Reactome:R-HSA-6808741") AnnotationAssertion(Annotation(rdfs:label "PR:000026403 located_in GO:0005789") "Reactome:R-HSA-6810957") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P35606, 2-906") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCOPB2/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000050912") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P35606-1, 2-906") @@ -116628,6 +116908,7 @@ AnnotationAssertion(Annotation(rdfs:label "PR:000026406 located_in GO:0005829") AnnotationAssertion(Annotation(rdfs:label "PR:000026406 located_in GO:0000139") "Reactome:R-HSA-6808743") AnnotationAssertion(Annotation(rdfs:label "PR:000026406 located_in GO:0030133") "Reactome:R-HSA-6808745") AnnotationAssertion(Annotation(rdfs:label "PR:000026406 located_in GO:0005789") "Reactome:R-HSA-6810959") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O14579, 2-308") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCOPE/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000193851") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O14579-1, 2-308") @@ -116864,14 +117145,14 @@ EquivalentClasses( ObjectIntersecti SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L26-like 1, initiator methionine removed form) +# Class: (ribosomal protein uL24-like, initiator methionine removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "A 60S ribosomal protein L26-like 1 that has had the initiator methionine removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A ribosomal protein uL24-like that has had the initiator methionine removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "RPL26L1/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000026689") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L26-like 1, initiator methionine removed form") +AnnotationAssertion(rdfs:label "ribosomal protein uL24-like, initiator methionine removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -116971,6 +117252,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "A DNA-directed RNA polymerases I and III subunit RPAC1, initiator methionine removed form in human. Example: UniProtKB:O15160-1, 2-346.") AnnotationAssertion(Annotation(rdfs:label "PR:000026766 located_in GO:0005829") "Reactome:R-HSA-1964454") AnnotationAssertion(Annotation(rdfs:label "PR:000026766 located_in GO:0005654") "Reactome:R-HSA-63498") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O15160, 2-346") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPOLR1C/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000132739") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O15160-1, 2-346") @@ -116999,6 +117281,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:CNA") Annotation( "Reactome:R-HSA-443809") "An ephrin type-B receptor 2, signal peptide removed form in human. Example: UniProtKB:P29323-1, 19-1055.") AnnotationAssertion(Annotation(rdfs:label "PR:000026868 located_in GO:0005886") "Reactome:R-HSA-443809") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P29323, 19-1055") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hEPHB2/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000016827") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P29323-1, 19-1055") @@ -117032,6 +117315,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:CNA") Annotation( "Reactome:R-HSA-167628") Annotation( "Reactome:R-HSA-167632") "A T-cell-specific surface glycoprotein CD28, signal peptide removed form in human. Example: UniProtKB:P10747-1, 19-220.") AnnotationAssertion(Annotation(rdfs:label "PR:000026870 located_in GO:0005829") "Reactome:R-HSA-167628") AnnotationAssertion(Annotation(rdfs:label "PR:000026870 located_in GO:0005886") "Reactome:R-HSA-167632") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P10747, 19-220") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCD28/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000014652") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P10747-1, 19-220") @@ -117093,6 +117377,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:CNx") Annotation( "PRO:DAN") Annotation( "Reactome:R-HSA-197568") "A signal-regulatory protein beta-1, signal peptide removed form in human. Example: UniProtKB:O00241-1, 30-398.") AnnotationAssertion(Annotation(rdfs:label "PR:000026881 located_in GO:0005886") "Reactome:R-HSA-197568") AnnotationAssertion(Annotation(rdfs:label "PR:000026881 located_in GO:0030667") "Reactome:R-HSA-6804801") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O00241, 30-398") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSIRPB1/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000014956") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O00241-1, 30-398") @@ -117125,6 +117410,7 @@ AnnotationAssertion(Annotation(rdfs:label "PR:000026884 located_in GO:0005796") AnnotationAssertion(Annotation(rdfs:label "PR:000026884 located_in GO:0043202") "Reactome:R-HSA-2090057") AnnotationAssertion(Annotation(rdfs:label "PR:000026884 located_in GO:0005886") "Reactome:R-HSA-2090084") AnnotationAssertion(Annotation(rdfs:label "PR:000026884 located_in GO:0005576") "Reactome:R-HSA-375056") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O00468, 30-2068") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hAGRN/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O00468-1, 30-2068") AnnotationAssertion( "protein") @@ -117152,6 +117438,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:CNx") Annotation( "Reactome:R-HSA-443615") "A neural cell adhesion molecule L1-like protein, signal peptide removed form in human. Example: UniProtKB:O00533-1, 25-1208.") AnnotationAssertion(Annotation(rdfs:label "PR:000026887 located_in GO:0005886") "Reactome:R-HSA-443615") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O00533, 25-1208") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCHL1/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000247896") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O00533-1, 25-1208") @@ -117341,6 +117628,7 @@ SubClassOf( ObjectExactCardinality( AnnotationAssertion(Annotation( "PRO:DNx") "A laminin subunit alpha-3, signal peptide removed form in human. Example: UniProtKB:Q16787-2, 36-3333.") AnnotationAssertion(Annotation(rdfs:label "PR:000027297 located_in GO:0005576") "Reactome:R-HSA-445991") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q16787, 36-3333") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hLAMA3/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000017058") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q16787-2, 36-3333") @@ -117358,6 +117646,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "A eukaryotic-type lysine--tRNA ligase, initiator methionine removed form in human. Example: UniProtKB:Q15046-1, 2-597.") AnnotationAssertion(Annotation(rdfs:label "PR:000027320 located_in GO:0005829") "Reactome:R-HSA-379568") AnnotationAssertion(Annotation(rdfs:label "PR:000027320 located_in GO:0005759") "Reactome:R-HSA-379617") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q15046, 2-597") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hKARS/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000152765") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q15046-1, 2-597") @@ -117375,6 +117664,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "A eukaryotic translation elongation factor 1 epsilon-1, initiator methionine removed form in human. Example: UniProtKB:O43324-1, 2-174.") AnnotationAssertion(Annotation(rdfs:label "PR:000027324 located_in GO:0005829") "Reactome:R-HSA-379693") AnnotationAssertion( "TDR:2612") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O43324, 2-174") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hEEF1E1/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000221132") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O43324-1, 2-174") @@ -117390,6 +117680,7 @@ SubClassOf( ObjectSomeValuesFrom( (26S proteasome non-ATPase regulatory subunit 4, initiator methionine removed form (human)) AnnotationAssertion(Annotation( "PRO:DNx") "A 26S proteasome non-ATPase regulatory subunit 4, initiator methionine removed form in human. Example: UniProtKB:P55036-1, 2-377.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P55036, 2-377") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPSMD4/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P55036-1, 2-377") AnnotationAssertion( "protein") @@ -117406,6 +117697,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "A 26S proteasome non-ATPase regulatory subunit 5, initiator methionine removed form in human. Example: UniProtKB:Q16401-1, 2-504.") AnnotationAssertion(Annotation(rdfs:label "PR:000027337 located_in GO:0005654") "Reactome:R-HSA-174346") AnnotationAssertion(Annotation(rdfs:label "PR:000027337 located_in GO:0005829") "Reactome:R-HSA-68802") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q16401, 2-504") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPSMD5/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000173835") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q16401-1, 2-504") @@ -117422,6 +117714,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "A 26S proteasome non-ATPase regulatory subunit 6, initiator methionine removed form in human. Example: UniProtKB:Q15008-1, 2-389.") AnnotationAssertion( "TDR:7546") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q15008, 2-389") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPSMD6/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000173838") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q15008-1, 2-389") @@ -117456,6 +117749,7 @@ AnnotationAssertion(Annotation(rdfs:label "PR:000027343 located_in GO:1904813") AnnotationAssertion(Annotation(rdfs:label "PR:000027343 located_in GO:0034774") "Reactome:R-HSA-6800943") AnnotationAssertion(Annotation(rdfs:label "PR:000027343 located_in GO:0005576") "Reactome:R-HSA-6806441") AnnotationAssertion(Annotation(rdfs:label "PR:000027343 located_in GO:0005829") "Reactome:R-HSA-68790") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O00231, 2-422") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPSMD11/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000173857") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O00231-1, 2-422") @@ -117528,6 +117822,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "A proteasome subunit alpha type-3, initiator methionine removed form in human. Example: UniProtKB:P25788-1, 2-255.") AnnotationAssertion(Annotation(rdfs:label "PR:000027353 located_in GO:0005654") "Reactome:R-HSA-174323") AnnotationAssertion(Annotation(rdfs:label "PR:000027353 located_in GO:0005829") "Reactome:R-HSA-68728") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P25788, 2-255") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPSMA3/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000124091") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P25788-1, 2-255") @@ -117540,19 +117835,6 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (proteasome subunit alpha type-7, initiator methionine removed form (human)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A proteasome subunit alpha type-7, initiator methionine removed form in human.") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPSMA7/InitMet-") -AnnotationAssertion( "protein") -AnnotationAssertion( "PR:000027357") -AnnotationAssertion(rdfs:comment "Category=organism-modification.") -AnnotationAssertion(rdfs:label "proteasome subunit alpha type-7, initiator methionine removed form (human)") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (proteasome subunit beta type-3, initiator methionine removed form (human)) AnnotationAssertion(Annotation( "PRO:DNx") "A proteasome subunit beta type-3, initiator methionine removed form in human. UniProtKB:P49720, 2-205.") @@ -117627,6 +117909,7 @@ AnnotationAssertion(Annotation( "Reactome:R-HSA-202757") AnnotationAssertion(Annotation(rdfs:label "PR:000027393 located_in GO:0035579") "Reactome:R-HSA-6799647") AnnotationAssertion(Annotation(rdfs:label "PR:000027393 located_in GO:0070821") "Reactome:R-HSA-6800979") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P11215, 17-1152") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hITGAM/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000016289") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P11215-1, 17-1152") @@ -117711,6 +117994,7 @@ SubClassOf( ObjectExactCardinality( # Class: (von Willebrand factor, signal peptide removed form (human)) AnnotationAssertion(Annotation( "PRO:DNx") "A von Willebrand factor, signal peptide removed form in human. Example: UniProtKB:P04275-1, 23-763.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P04275, 23-763") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hVWF/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000022682") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P04275-1, 23-763") @@ -117725,11 +118009,13 @@ SubClassOf( ObjectSomeValuesFrom( (tumor necrosis factor receptor superfamily member 1A, signal peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") "A tumor necrosis factor receptor superfamily member 1A, signal peptide removed form in human. Example: UniProtKB:P19438-1, 22-455.") +AnnotationAssertion(Annotation( "PRO:DNx") "A tumor necrosis factor receptor superfamily member 1A, signal peptide removed form in human. Example: UniProtKB:P19438-1, 30-455.") +AnnotationAssertion(Annotation(rdfs:label "PR:000028386 located_in GO:0005886") "Reactome:R-HSA-5675738") AnnotationAssertion(Annotation(rdfs:label "PR:000028386 located_in GO:0005886") "Reactome:R-HSA-66344") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P19438, 30-455") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hTNFRSF1A/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000034543") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P19438-1, 22-455") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P19438-1, 30-455") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000028386") AnnotationAssertion(rdfs:comment "Category=organism-modification.") @@ -117743,6 +118029,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "A telomeric repeat-binding factor 1, initiator methionine removed form in human. Example: UniProtKB:P54274-1, 2-439.") AnnotationAssertion(Annotation(rdfs:label "PR:000028388 located_in GO:0005654") "Reactome:R-HSA-164618") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P54274, 2-439") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hTERF1/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000197129") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P54274-1, 2-439") @@ -117759,6 +118046,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "An integrin alpha-IIb, signal peptide removed form in human. Example: UniProtKB:P08514-1, 32-1039.") AnnotationAssertion(Annotation(rdfs:label "PR:000028409 located_in GO:0005886") "Reactome:R-HSA-57578") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P08514, 32-1039") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hITGA2B/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000016275") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P08514-1, 32-1039") @@ -117776,6 +118064,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "A junctional adhesion molecule A, signal peptide removed form in human. Example: UniProtKB:Q9Y624-1, 28-299.") AnnotationAssertion(Annotation(rdfs:label "PR:000028413 located_in GO:0005886") "Reactome:R-HSA-197845") AnnotationAssertion(Annotation(rdfs:label "PR:000028413 located_in GO:0030054") "Reactome:R-HSA-2134498") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q9Y624, 28-299") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hF11R/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000015066") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q9Y624-1, 28-299") @@ -117793,6 +118082,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "An integrin alpha-L, signal peptide removed form in human. Example: UniProtKB:P20701-1, 26-1170.") AnnotationAssertion(Annotation(rdfs:label "PR:000028414 located_in GO:0005886") "Reactome:R-HSA-198013") AnnotationAssertion(Annotation(rdfs:label "PR:000028414 located_in GO:0035579") "Reactome:R-HSA-6799536") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P20701, 26-1170") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hITGAL/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000016292") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P20701-1, 26-1170") @@ -117810,6 +118100,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "An integrin beta-1, signal peptide removed form in human. Example: UniProtKB:P05556-1, 21-798.") AnnotationAssertion(Annotation(rdfs:label "PR:000028415 located_in GO:0005886") "Reactome:R-HSA-57596") AnnotationAssertion(Annotation(rdfs:label "PR:000028415 located_in GO:0010008") "Reactome:R-HSA-9611157") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P05556, 21-798") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hITGB1/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000016334") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P05556-1, 21-798") @@ -117845,6 +118136,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "A neural cell adhesion molecule L1, signal peptide removed form in human. Example: UniProtKB:P32004-1, 20-1257.") AnnotationAssertion(Annotation(rdfs:label "PR:000028421 located_in GO:0005886") "Reactome:R-HSA-191465") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P32004, 20-1257") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hL1CAM/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000015022") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P32004-1, 20-1257") @@ -117862,6 +118154,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "An epidermal growth factor receptor, signal peptide removed form in human. Example: UniProtKB:P00533-1, 25-1210.") AnnotationAssertion(Annotation(rdfs:label "PR:000028422 located_in GO:0005886") "Reactome:R-HSA-179837") AnnotationAssertion(Annotation(rdfs:label "PR:000028422 located_in GO:0010008") "Reactome:R-HSA-9611160") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P00533, 25-1210") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hEGFR/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000016665") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P00533-1, 25-1210") @@ -117895,6 +118188,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "A eukaryotic translation initiation factor 4E, initiator methionine removed form in human. Example: UniProtKB:P06730-1, 2-217.") AnnotationAssertion(Annotation(rdfs:label "PR:000028426 located_in GO:0005829") "Reactome:R-HSA-72578") AnnotationAssertion( "TDR:1950") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P06730, 2-217") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hEIF4E/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000193634") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P06730-1, 2-217") @@ -118947,14 +119241,16 @@ AnnotationAssertion(rdfs:label "ER AnnotationAssertion( ) SubClassOf( ) -# Class: (protein FAM102B) +# Class: (EEIG family member 2) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human FAM102B gene or a 1:1 ortholog thereof.") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "FAM102B") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human EEIG2 gene or a 1:1 ortholog thereof.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "EEIG2") +AnnotationAssertion( "protein FAM102B") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( ) "FAM102B") AnnotationAssertion( "PR:000029452") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "protein FAM102B") +AnnotationAssertion(rdfs:label "EEIG family member 2") AnnotationAssertion( ) SubClassOf( ) @@ -119699,7 +119995,7 @@ SubClassOf( (pro-neuregulin-1, membrane-bound isoform) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human NRG1 gene or a 1:1 ortholog thereof.") -AnnotationAssertion(Annotation( "PMID:12648463") "ARIA") +AnnotationAssertion(Annotation( "PMID:12648463") "ARIA") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "NRG1") AnnotationAssertion(Annotation( "PMID:12648463") "acetylcholine receptor inducing activity") AnnotationAssertion(Annotation( "PMID:12648463") "glial growth factor") @@ -120614,6 +120910,19 @@ AnnotationAssertion(rdfs:comment " AnnotationAssertion(rdfs:label "protein-glutamine gamma-glutamyltransferase") SubClassOf( ) +# Class: (CD14 molecule cleaved 2 soluble form (mouse)) + +AnnotationAssertion(Annotation( "PRO:DAN") "A CD14 molecule cleaved 2 soluble form in mouse.") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "mCD14/Clv:2/soluble") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000029986") +AnnotationAssertion(rdfs:comment "Category=organism-modification.") +AnnotationAssertion(rdfs:label "CD14 molecule cleaved 2 soluble form (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (A-kinase anchor protein 7 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:O43687") "An A-kinase anchor protein 7 that is encoded in the genome of human.") @@ -121387,19 +121696,19 @@ AnnotationAssertion(rdfs:label "C4 AnnotationAssertion( ) SubClassOf( ) -# Class: (cell surface hyaluronidase) +# Class: (cell surface hyaluronidase CEMIP2) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human CEMIP2 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "CEMIP2") AnnotationAssertion( "cell migration-inducing hyaluronidase 2") +AnnotationAssertion( "cell surface hyaluronidase") AnnotationAssertion( "transmembrane protein 2") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "KIAA1412") AnnotationAssertion(Annotation( ) "TMEM2") AnnotationAssertion( "PR:000030473") -AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "cell surface hyaluronidase") -AnnotationAssertion( ) +AnnotationAssertion(rdfs:comment "Category=gene. Note: The human CEMIP2 is not active as a hyaluronidase, however the mouse ortholog is.") +AnnotationAssertion(rdfs:label "cell surface hyaluronidase CEMIP2") SubClassOf( ) # Class: (ER membrane protein complex subunit 1) @@ -121476,18 +121785,20 @@ AnnotationAssertion(rdfs:label "tr AnnotationAssertion( ) SubClassOf( ) -# Class: (teratocarcinoma-derived growth factor 1) +# Class: (protein Cripto) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human TDGF1 gene or a 1:1 ortholog thereof.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human CRIPTO gene or a 1:1 ortholog thereof.") AnnotationAssertion( "CRGF") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "TDGF1") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "CRIPTO") AnnotationAssertion( "cripto-1 growth factor") AnnotationAssertion( "epidermal growth factor-like cripto protein CR1") +AnnotationAssertion( "teratocarcinoma-derived growth factor 1") AnnotationAssertion( "protein") -AnnotationAssertion(Annotation( ) "CRIPTO") +AnnotationAssertion(Annotation( ) "CRIPTO-1") +AnnotationAssertion(Annotation( ) "TDGF1") AnnotationAssertion( "PR:000030513") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "teratocarcinoma-derived growth factor 1") +AnnotationAssertion(rdfs:label "protein Cripto") AnnotationAssertion( ) SubClassOf( ) @@ -121532,18 +121843,19 @@ AnnotationAssertion(rdfs:label "CO AnnotationAssertion( ) SubClassOf( ) -# Class: (putative chondrosarcoma-associated gene 1 protein) +# Class: (chondrosarcoma-associated gene 1 protein) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human CSAG1 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "CSAG1") AnnotationAssertion( "CT24.1") AnnotationAssertion( "cancer/testis antigen 24.1") AnnotationAssertion( "cancer/testis antigen CSAGE") +AnnotationAssertion( "putative chondrosarcoma-associated gene 1 protein") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "CSAGE") AnnotationAssertion( "PR:000030546") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "putative chondrosarcoma-associated gene 1 protein") +AnnotationAssertion(rdfs:label "chondrosarcoma-associated gene 1 protein") AnnotationAssertion( ) SubClassOf( ) @@ -121839,15 +122151,16 @@ AnnotationAssertion(rdfs:label "tr AnnotationAssertion( ) SubClassOf( ) -# Class: (WSC domain-containing protein 2) +# Class: (sialate:O-sulfotransferase 2) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human WSCD2 gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "WSC domain-containing protein 2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "WSCD2") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "KIAA0789") AnnotationAssertion( "PR:000030696") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "WSC domain-containing protein 2") +AnnotationAssertion(rdfs:label "sialate:O-sulfotransferase 2") AnnotationAssertion( ) SubClassOf( ) @@ -121897,15 +122210,18 @@ AnnotationAssertion(rdfs:label "pa AnnotationAssertion( ) SubClassOf( ) -# Class: (cotranscriptional regulator FAM172A) +# Class: (cotranscriptional regulator ARB2A) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human FAM172A gene or a 1:1 ortholog thereof.") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "FAM172A") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human ARB2A gene or a 1:1 ortholog thereof.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "ARB2A") +AnnotationAssertion( "cotranscriptional regulator FAM172A") +AnnotationAssertion( "protein FAM172A") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "C5orf21") +AnnotationAssertion(Annotation( ) "FAM172A") AnnotationAssertion( "PR:000030727") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "cotranscriptional regulator FAM172A") +AnnotationAssertion(rdfs:label "cotranscriptional regulator ARB2A") AnnotationAssertion( ) SubClassOf( ) @@ -122646,19 +122962,21 @@ AnnotationAssertion(rdfs:label "pr AnnotationAssertion( ) SubClassOf( ) -# Class: (adhesion G-protein coupled receptor F2) +# Class: (putative adhesion G protein-coupled receptor F2P) AnnotationAssertion(Annotation( "PRO:DAN") "An adhesion G-protein coupled receptor that is a translation product of the human ADGRF2 gene or a 1:1 ortholog thereof.") AnnotationAssertion( "IUPHARobj:191") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "ADGRF2") AnnotationAssertion( "G-protein coupled receptor 111") AnnotationAssertion( "G-protein coupled receptor PGR20") +AnnotationAssertion( "adhesion G-protein coupled receptor F2") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( ) "ADGRF2P") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "GPR111") AnnotationAssertion(Annotation( ) "PGR20") AnnotationAssertion( "PR:000031052") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "adhesion G-protein coupled receptor F2") +AnnotationAssertion(rdfs:label "putative adhesion G protein-coupled receptor F2P") AnnotationAssertion( ) SubClassOf( ) @@ -124556,7 +124874,10 @@ SubClassOf( "PRO:DNx") "A protein that is a translation product of the human DNAJC16 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "DNAJC16") +AnnotationAssertion( "ER-resident protein ERdj8") +AnnotationAssertion( "endoplasmic reticulum DNA J domain-containing protein 8") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( ) "ERDJ8") AnnotationAssertion(Annotation( ) "KIAA0962") AnnotationAssertion( "PR:000031842") AnnotationAssertion(rdfs:comment "Category=gene.") @@ -126340,17 +126661,19 @@ AnnotationAssertion(rdfs:label "WA AnnotationAssertion( ) SubClassOf( ) -# Class: (acidic leucine-rich nuclear phosphoprotein 32 family member C) +# Class: (putative uncharacterized protein ANP32CP) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human ANP32C gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "ANP32C") +AnnotationAssertion( "acidic leucine-rich nuclear phosphoprotein 32 family member C") AnnotationAssertion( "phosphoprotein 32-related protein 1") AnnotationAssertion( "tumorigenic protein pp32r1") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( ) "ANP32CP") AnnotationAssertion(Annotation( ) "PP32R1") AnnotationAssertion( "PR:000032654") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "acidic leucine-rich nuclear phosphoprotein 32 family member C") +AnnotationAssertion(rdfs:label "putative uncharacterized protein ANP32CP") AnnotationAssertion( ) SubClassOf( ) @@ -126809,9 +127132,44 @@ AnnotationAssertion(rdfs:comment " AnnotationAssertion(rdfs:label "BUB1/BUB1B protein") SubClassOf( ) +# Class: (CD14 molecule cleaved 2 GPI-anchored form (human)) + +AnnotationAssertion(Annotation( "Reactome:R-HSA-166033") Annotation( "Reactome:R-HSA-2201284") "A CD14 molecule cleaved 2 GPI-anchored form in human. UniProtKB:P08571, 20-345, Asn-345, MOD:00167.") +AnnotationAssertion(Annotation(rdfs:label "PR:000035702 located_in GO:0005886") "Reactome:R-HSA-166033") +AnnotationAssertion(Annotation(rdfs:label "PR:000035702 located_in GO:0010008") "Reactome:R-HSA-2201284") +AnnotationAssertion(Annotation( "Reactome:R-HSA-166033") Annotation( "Reactome:R-HSA-2201284") "GPI-N345-CD14 (human)") +AnnotationAssertion(Annotation( "Reactome:R-HSA-166033") Annotation( "Reactome:R-HSA-2201284") "GPI-anchored form of CD14 (human)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000020885, Asn-345, MOD:00167") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P08571, 20-345, Asn-345, MOD:00167") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "hCD14/Clv:2/anchored") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000035702") +AnnotationAssertion(rdfs:comment "Category=organism-modification.") +AnnotationAssertion(rdfs:label "CD14 molecule cleaved 2 GPI-anchored form (human)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (CD14 molecule cleaved 2 soluble form (human)) + +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P08571") "A CD14 molecule cleaved 2 soluble form in human.") +AnnotationAssertion(Annotation(rdfs:label "PR:000035703 located_in GO:0005576") "Reactome:R-HSA-166025") +AnnotationAssertion(Annotation( "Reactome:R-HSA-166025") "Secreted form of CD14 (human)") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "hCD14/Clv:2/soluble") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000035703") +AnnotationAssertion(rdfs:comment "Category=organism-modification.") +AnnotationAssertion(rdfs:label "CD14 molecule cleaved 2 soluble form (human)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (ubiquitin (RPS27A)) -AnnotationAssertion(Annotation( "PMID:124018") Annotation( "PRO:CNA") "A ubiquitin-40S ribosomal protein S27a that has been processed by proteolytic cleavage. This form is the N-terminal region consisting of the Ubiquitin (Pfam:PF00240) domain. Example: UniProtKB:P62979, 1-76.") +AnnotationAssertion(Annotation( "PMID:124018") Annotation( "PRO:CNA") "A ubiquitin-ribosomal protein eS31 fusion protein that has been processed by proteolytic cleavage. This form is the N-terminal region consisting of the Ubiquitin (Pfam:PF00240) domain. Example: UniProtKB:P62979, 1-76.") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "RPS27A/Clv:ubiq") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000035716") @@ -126880,7 +127238,7 @@ SubClassOf( ObjectSomeValuesFrom( (ubiquitin (UBA52)) -AnnotationAssertion(Annotation( "PRO:CNA") "A ubiquitin-60S ribosomal protein L40 that has been processed by proteolytic cleavage. This form is the N-terminal region consisting of the Ubiquitin (Pfam:PF00240) domain. Example: UniProtKB:P62987, 1-76.") +AnnotationAssertion(Annotation( "PRO:CNA") "A ubiquitin-ribosomal protein eL40 fusion protein that has been processed by proteolytic cleavage. This form is the N-terminal region consisting of the Ubiquitin (Pfam:PF00240) domain. Example: UniProtKB:P62987, 1-76.") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "UBA52/Clv:ubiq") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000035722") @@ -127272,6 +127630,61 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (CD14 molecule cleaved 1 soluble form (human)) + +AnnotationAssertion(Annotation( "PMID:7519994") Annotation( "PRO:CNA") "A CD14 molecule cleaved 1 soluble form in human. UniProtKB:P08571, 20-367.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000020884") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P08571, 20-367") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCD14/Clv:1/soluble") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000036615") +AnnotationAssertion(rdfs:comment "Category=organism-modification.") +AnnotationAssertion(rdfs:label "CD14 molecule cleaved 1 soluble form (human)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (CD14 molecule cleaved 2) + +AnnotationAssertion(Annotation( "PRO:DAN") "A CD14 molecule, signal peptide removed form that lacks the propeptide. Example: UniProtKB:P08571, 20-345.") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "CD14/Clv:2") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000036848") +AnnotationAssertion(rdfs:comment "Category=modification.") +AnnotationAssertion(rdfs:label "CD14 molecule cleaved 2") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (CD14 molecule cleaved and soluble form) + +AnnotationAssertion(Annotation( "PRO:DAN") "A CD14 molecule, signal peptide removed form that has been processed by proteolytic cleavage to yield the N-terminal domain lacking a GPI-anchor.") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "CD14/ClvPrd/soluble") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000036849") +AnnotationAssertion(rdfs:comment "Category=modification.") +AnnotationAssertion(rdfs:label "CD14 molecule cleaved and soluble form") +EquivalentClasses( ObjectUnionOf( )) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (CD14 molecule cleaved and soluble form (mouse)) + +AnnotationAssertion(Annotation( "PRO:DAN") "A CD14 molecule cleaved and soluble form in mouse.") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "mCD14/ClvPrd/soluble") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000036850") +AnnotationAssertion(rdfs:comment "Category=organism-modification.") +AnnotationAssertion(rdfs:label "CD14 molecule cleaved and soluble form (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectUnionOf( )) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (neurexin-2-beta) AnnotationAssertion(Annotation( "PRO:DAN") Annotation( "Wikipedia:NRXN2") "A neurexin-2 that is translated from the downstream promoter, yielding proteins lacking EGF-like domains.") @@ -127348,6 +127761,37 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (CD14 molecule cleaved and soluble form (human)) + +AnnotationAssertion(Annotation( "PRO:DAN") "A CD14 molecule cleaved and soluble form in human.") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "hCD14/ClvPrd/soluble") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000036945") +AnnotationAssertion(rdfs:comment "Category=organism-modification.") +AnnotationAssertion(rdfs:label "CD14 molecule cleaved and soluble form (human)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectUnionOf( )) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (CD14 molecule cleaved 2 (mouse)) + +AnnotationAssertion(Annotation( "PRO:DAN") "A CD14 molecule cleaved 2 in mouse. This represents both the GPI-anchored and soluble forms. UniProtKB:P10810, 16-336.") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( "UniProtKB:P10810") Annotation( ) "PRO_0000020887") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( "UniProtKB:P10810") Annotation( ) "UniProtKB:P10810, 16-336") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "mCD14/Clv:2") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "PRO:DAN") "CD14 molecule (mouse)") +AnnotationAssertion( "PR:000036946") +AnnotationAssertion(rdfs:comment "Category=organism-modification.") +AnnotationAssertion(rdfs:label "CD14 molecule cleaved 2 (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectUnionOf( )) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (T-cell surface glycoprotein CD1 (human)) AnnotationAssertion(Annotation( "PRO:DAN") "A T-cell surface glycoprotein CD1 that is encoded in the genome of human.") @@ -127530,8 +127974,8 @@ SubClassOf( ObjectSomeValuesFrom( (cochlin, signal peptide removed form (mouse)) -AnnotationAssertion(Annotation( "PMID:23684986") Annotation( "PRO:KRC") "A cochlin (mouse) that the signal peptide has been removed. UniProtKB:Q62507, 26-552.") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q62507, 26-552") +AnnotationAssertion(Annotation( "PMID:23684986") Annotation( "PRO:KRC") "A cochlin (mouse) that the signal peptide has been removed. UniProtKB:Q62507, 27-552.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q62507, 27-552") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "mCOCH/SigPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000037260") @@ -127590,6 +128034,7 @@ AnnotationAssertion(Annotation(rdfs:label "PR:000037305 located_in GO:0000139") AnnotationAssertion(Annotation(rdfs:label "PR:000037305 located_in GO:0005789") "Reactome:R-HSA-1679057") AnnotationAssertion(Annotation(rdfs:label "PR:000037305 located_in GO:0036020") "Reactome:R-HSA-167941") AnnotationAssertion(Annotation(rdfs:label "PR:000037305 located_in GO:0010008") "Reactome:R-HSA-2000341") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O15455, 24-904") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hTLR3/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O15455-1, 24-904") AnnotationAssertion( "protein") @@ -127601,6 +128046,55 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (CD14 molecule cleaved 1 soluble form (mouse)) + +AnnotationAssertion(Annotation( "PMID:10601848") Annotation( "PMID:18606699") Annotation( "PRO:CNA") "A CD14 molecule cleaved 1 soluble form in mouse. UniProtKB:P10810, 16-358.") +AnnotationAssertion( "Secreted CD14 (mouse)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P10810, 16-358") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "mCD14/Clv:1/soluble") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000037469") +AnnotationAssertion(rdfs:comment "Category=organism-modification. Note: The coordinates of the soluble form shown in the example were added based on similarity to the human soluble form corresponding to PR:000002146 [PRO:DAN].") +AnnotationAssertion(rdfs:label "CD14 molecule cleaved 1 soluble form (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (CD14 molecule cleaved 2 GPI-anchored form (mouse)) + +AnnotationAssertion(Annotation( "PMID:10601848") Annotation( "PMID:18606699") Annotation( "PRO:CNA") "A CD14 molecule cleaved 2 GPI-anchored form in mouse. UniProtKB:P10810, 16-336, Asn-336, MOD:00167.") +AnnotationAssertion(Annotation( "PRO:DNx") "GPI-anchored CD14 (mouse)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000020887, Asn-336, MOD:00167") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P10810, 16-336, Asn-336, MOD:00167") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "mCD14/Clv:2/anchored") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000037470") +AnnotationAssertion(rdfs:comment "Category=organism-modification. Note: The coordinates of the GPI-anchored form shown are based on similarity to the human anchored form PR:000035702 [PRO:DAN].") +AnnotationAssertion(rdfs:label "CD14 molecule cleaved 2 GPI-anchored form (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (CD14 molecule cleaved 2 (human)) + +AnnotationAssertion(Annotation( "PRO:CNA") Annotation( "PRO:DAN") "A CD14 molecule cleaved 2 in human. This represents both the GPI-anchored and soluble forms. UniProtKB:P08571, 20-345.") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( "UniProtKB:P08571") Annotation( ) "PRO_0000020885") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( "UniProtKB:P08571") Annotation( ) "UniProtKB:P08571, 20-345") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "hCD14/Clv:2") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "PRO:CNA") "CD14 molecule (human)") +AnnotationAssertion( "PR:000037480") +AnnotationAssertion(rdfs:comment "Category=organism-modification.") +AnnotationAssertion(rdfs:label "CD14 molecule cleaved 2 (human)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectUnionOf( )) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (Toll-like receptor 3, signal peptide removed form (mouse)) AnnotationAssertion(Annotation( "ECO:0000250") Annotation( "PRO:CNA") "A Toll-like receptor 3, signal peptide removed form in mouse. UniProtKB:Q99MB1, 26-905.") @@ -127619,6 +128113,8 @@ SubClassOf( ObjectSomeValuesFrom( (Toll-like receptor 3, signal peptide removed form (chicken)) AnnotationAssertion(Annotation( "ECO:0000250") Annotation( "PRO:CNA") "A Toll-like receptor 3, signal peptide removed form in chicken. Example: UniProtKB:Q0PQ88-1, 27-896.") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "PRO_5010134129") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "UniProtKB:Q0PQ88, 27-896") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "chick-TLR3/SigPep-") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "UniProtKB:Q0PQ88-1, 27-896") AnnotationAssertion( "protein") @@ -127870,6 +128366,7 @@ AnnotationAssertion(Annotation( "Reactome:R-HSA-174063") AnnotationAssertion(Annotation(rdfs:label "PR:000040911 located_in GO:0005829") "Reactome:R-HSA-174100") AnnotationAssertion(Annotation(rdfs:label "PR:000040911 located_in GO:0005654") "Reactome:R-HSA-8852073") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P51965, 2-193") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "hUBE2E1/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000082470") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P51965-1, 2-193") @@ -127906,6 +128403,7 @@ SubClassOf( "PRO:DAN") "An ATP-dependent 6-phosphofructokinase, muscle type (human) that has had the initiator methionine removed. Example: UniProtKB:P08237-1, 2-780.") AnnotationAssertion(Annotation(rdfs:label "PR:000041555 located_in GO:0005829") "Reactome:R-HSA-70460") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P08237, 2-780") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "hPFKM/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000112016") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P08237-1, 2-780") @@ -127922,6 +128420,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DAN") "An integrin beta-3 (human) that has the signal peptide removed. Example: UniProtKB:P05106-1, 27-788.") AnnotationAssertion(Annotation(rdfs:label "PR:000041631 located_in GO:0005886") "Reactome:R-HSA-57600") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P05106, 27-788") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "hITGB3/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000016344") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P05106-1, 27-788") @@ -127954,6 +128453,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DAN") "A 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 (human) that has had the initiator methionine removed. Example: UniProtKB:P16118-1, 2-471.") AnnotationAssertion(Annotation(rdfs:label "PR:000042034 located_in GO:0005829") "Reactome:R-HSA-71785") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P16118, 2-471") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "hPFKFB1/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000179960") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P16118-1, 2-471") @@ -127971,6 +128471,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DAN") "A mitotic spindle assembly checkpoint protein MAD2A (human) that has had the initiator methionine removed. Example: UniProtKB:Q13257-1, 2-205.") AnnotationAssertion(Annotation(rdfs:label "PR:000042259 located_in GO:0005829") "Reactome:R-HSA-141400") AnnotationAssertion(Annotation(rdfs:label "PR:000042259 located_in GO:0005829") "Reactome:R-HSA-141447") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q13257, 2-205") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "hMAD2L1/InitMet-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000126117") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q13257-1, 2-205") @@ -128020,6 +128521,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DAN") "A neuronal acetylcholine receptor subunit alpha-7, signal peptide removed form in human. Example: UniProtKB:P36544-1, 23-502.") AnnotationAssertion(Annotation(rdfs:label "PR:000044063 located_in GO:0005886") "Reactome:R-HSA-507830") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P36544, 23-502") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "hCHRNA7/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000000366") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P36544-1, 23-502") @@ -128487,6 +128989,7 @@ AnnotationAssertion(Annotation( "Reactome:R-HSA-184199") AnnotationAssertion(Annotation(rdfs:label "PR:000044752 located_in GO:0031093") "Reactome:R-HSA-184205") AnnotationAssertion(Annotation(rdfs:label "PR:000044752 located_in GO:0005576") "Reactome:R-HSA-2426265") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P04085, 87-211") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "hPDGFA/mature") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000023357") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P04085-1, 87-211") @@ -128503,6 +129006,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DAN") "A platelet-derived growth factor subunit B mature form in human. Example: UniProtKB:P01127-1, 82-190.") AnnotationAssertion(Annotation(rdfs:label "PR:000044753 located_in GO:0005576") "Reactome:R-HSA-184201") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P01127, 82-190") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "hPDGFB/mature") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000023372") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P01127-1, 82-190") @@ -128622,7 +129126,6 @@ SubClassOf( (glycoprotein hormone beta chain) AnnotationAssertion(Annotation( "PRO:CNA") Annotation( "Pfam:PF00007") "A protein that has a core domain composition consisting of a signal peptide followed by a single copy of the Cys_knot (Pfam:PF00007) domain. The Cysteine knot is a protein structural motif containing three disulfide bridges.") -AnnotationAssertion( "PANTHER:PTHR11515") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000044813") AnnotationAssertion(rdfs:comment "Category=family.") @@ -128632,6 +129135,7 @@ SubClassOf( (ATPase inhibitor, mitochondrial, transit peptide removed form (human)) AnnotationAssertion(Annotation( "PRO:CNA") "An ATPase inhibitor, mitochondrial, transit peptide removed form in human. Example: UniProtKB:Q9UII2-1, 26-106.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q9UII2, 26-106") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hATP5IF1/TransPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000002547") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q9UII2-1, 26-106") @@ -129269,7 +129773,7 @@ SubClassOf( ObjectSomeValuesFrom( (aldehyde dehydrogenase family 1 member A3, initiator methionine removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-2980896") "An aldehyde dehydrogenase family 1 member A3 (human) that has had the initiator methionine removed. UniProtKB:P47895, 2-512.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-2980896") "A retinaldehyde dehydrogenase 3 (human) that has had the initiator methionine removed. UniProtKB:P47895, 2-512.") AnnotationAssertion(Annotation(rdfs:label "PR:000046309 located_in GO:0005829") "Reactome:R-HSA-2980896") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000056478") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P47895, 2-512") @@ -129349,9 +129853,9 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial, transit peptide removed form (human)) +# Class: (methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-70890") "A methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q02252, 34-535.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-70890") "A methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q02252, 34-535.") AnnotationAssertion(Annotation(rdfs:label "PR:000046315 located_in GO:0005759") "Reactome:R-HSA-70890") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000007189") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q02252, 34-535") @@ -129359,7 +129863,7 @@ AnnotationAssertion(Annotation( "protein") AnnotationAssertion( "PR:000046315") AnnotationAssertion(rdfs:comment "Category=organism-modification.") -AnnotationAssertion(rdfs:label "methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial, transit peptide removed form (human)") +AnnotationAssertion(rdfs:label "methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial, transit peptide removed form (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -129455,11 +129959,15 @@ SubClassOf( ObjectSomeValuesFrom( (alpha-amylase 1, signal peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-189050") "An alpha-amylase 1 (human) that has had the signal peptide removed. UniProtKB:P04745, 16-511.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-189050") "An alpha-amylase 1 (human) that has had the signal peptide removed. Example: UniProtKB:P0DUB6, 16-511.") AnnotationAssertion(Annotation(rdfs:label "PR:000046331 located_in GO:0005576") "Reactome:R-HSA-189050") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000001401") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P04745, 16-511") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hAMY1/SigPep-") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000001401") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000450820") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000450821") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P0DTE7, 16-511") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P0DTE8, 16-511") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P0DUB6, 16-511") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000046331") AnnotationAssertion(rdfs:comment "Category=organism-modification.") @@ -130736,10 +131244,10 @@ SubClassOf( ObjectSomeValuesFrom( (F-actin-capping protein subunit beta, initiator methionine removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-879409") "An F-actin-capping protein subunit beta (human) that has had the initiator methionine removed. UniProtKB:P47756, 2-277.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-879409") "An F-actin-capping protein subunit beta (human) that has had the initiator methionine removed. UniProtKB:P47756, 2-272.") AnnotationAssertion(Annotation(rdfs:label "PR:000046565 located_in GO:0005829") "Reactome:R-HSA-879409") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000204634") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P47756, 2-277") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P47756, 2-272") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCAPZB/InitMet-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000046565") @@ -131092,11 +131600,13 @@ SubClassOf( ObjectSomeValuesFrom( (cell surface glycoprotein CD200 receptor 1, signal peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-197761") "A cell surface glycoprotein CD200 receptor 1 (human) that has had the signal peptide removed. UniProtKB:Q8TD46, 29-325.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-197761") "A cell surface glycoprotein CD200 receptor 1 (human) that has had the signal peptide removed. Example: UniProtKB:Q8TD46-1, 29-325.") AnnotationAssertion(Annotation(rdfs:label "PR:000046620 located_in GO:0005886") "Reactome:R-HSA-197761") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000015128") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q8TD46, 29-325") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "UniProtKB:Q8TD46, 27-325") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCD200R1/SigPep-") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "UniProtKB:Q8TD46-1, 29-325") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "UniProtKB:Q8TD46-4, 27-325") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000046620") AnnotationAssertion(rdfs:comment "Category=organism-modification.") @@ -131640,6 +132150,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-2429659") "A liver carboxylesterase 1 (human) that has had the signal peptide removed. UniProtKB:P23141, 18-567.") AnnotationAssertion(Annotation(rdfs:label "PR:000046690 located_in GO:0005788") "Reactome:R-HSA-2429659") +AnnotationAssertion(Annotation(rdfs:label "PR:000046690 located_in GO:0005811") "Reactome:R-HSA-9727618") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000391359") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P23141, 18-567") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCES1/SigPep-") @@ -132398,6 +132909,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-432671") Annotation( "Reactome:R-HSA-432675") "A carboxypeptidase D (human) that has had the signal peptide removed. UniProtKB:O75976, 32-1380.") AnnotationAssertion(Annotation(rdfs:label "PR:000047057 located_in GO:0030659") "Reactome:R-HSA-432671") AnnotationAssertion(Annotation(rdfs:label "PR:000047057 located_in GO:0000139") "Reactome:R-HSA-432675") +AnnotationAssertion(Annotation(rdfs:label "PR:000047057 located_in GO:0005886") "Reactome:R-HSA-9715182") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000004401") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O75976, 32-1380") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCPD/SigPep-") @@ -132568,10 +133080,10 @@ SubClassOf( ObjectSomeValuesFrom( (granulocyte colony-stimulating factor, signal peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5432997") "A granulocyte colony-stimulating factor (human) that has had the signal peptide removed. UniProtKB:P09919, 30-207.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5432997") "A granulocyte colony-stimulating factor (human) that has had the signal peptide removed. UniProtKB:P09919, 31-207.") AnnotationAssertion(Annotation(rdfs:label "PR:000047086 located_in GO:0005576") "Reactome:R-HSA-5432997") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000015570") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P09919, 30-207") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P09919, 31-207") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCSF3/SigPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000047086") @@ -132842,6 +133354,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-6792584") "A lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial (human) that has had the transit peptide removed. UniProtKB:P11182, 62-482.") AnnotationAssertion(Annotation(rdfs:label "PR:000047137 located_in GO:0005759") "Reactome:R-HSA-6792584") +AnnotationAssertion(Annotation(rdfs:label "PR:000047137 located_in GO:0005829") "Reactome:R-HSA-9714663") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000020489") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P11182, 62-482") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hDBT/TransPep-") @@ -132942,6 +133455,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-8849139") "A spliceosome RNA helicase DDX39B (human) that has had the initiator methionine removed. UniProtKB:Q13838, 2-428.") AnnotationAssertion(Annotation(rdfs:label "PR:000047157 located_in GO:0005654") "Reactome:R-HSA-8849139") +AnnotationAssertion(Annotation(rdfs:label "PR:000047157 located_in GO:0005829") "Reactome:R-HSA-9715154") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000055071") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q13838, 2-428") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hDDX39B/InitMet-") @@ -133614,6 +134128,7 @@ SubClassOf( ObjectSomeValuesFrom( (ephrin type-A receptor 2, signal peptide removed form (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-2682326") "An ephrin type-A receptor 2 (human) that has had the signal peptide removed. UniProtKB:P29317, 24-976.") +AnnotationAssertion(Annotation(rdfs:label "PR:000047291 located_in GO:0005886") "Reactome:R-HSA-211422") AnnotationAssertion(Annotation(rdfs:label "PR:000047291 located_in GO:0005886") "Reactome:R-HSA-2682326") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000016800") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P29317, 24-976") @@ -133951,6 +134466,7 @@ AnnotationAssertion(Annotation(rdfs:label "PR:000047356 located_in GO:0005576") AnnotationAssertion(Annotation(rdfs:label "PR:000047356 located_in GO:0005788") "Reactome:R-HSA-5689449") AnnotationAssertion(Annotation(rdfs:label "PR:000047356 located_in GO:0030134") "Reactome:R-HSA-5689796") AnnotationAssertion(Annotation(rdfs:label "PR:000047356 located_in GO:0033116") "Reactome:R-HSA-5689798") +AnnotationAssertion(Annotation(rdfs:label "PR:000047356 located_in GO:0005796") "Reactome:R-HSA-9668037") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000002967") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P00451, 20-2351") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hF8/SigPep-") @@ -134168,10 +134684,10 @@ SubClassOf( ObjectSomeValuesFrom( (ferredoxin-2, mitochondrial, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-2395506") "A ferredoxin-2, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q6P4F2, 53-183.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-2395506") "A ferredoxin-2, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q6P4F2, 56-186.") AnnotationAssertion(Annotation(rdfs:label "PR:000047394 located_in GO:0005759") "Reactome:R-HSA-2395506") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000325952") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q6P4F2, 53-183") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q6P4F2, 56-186") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hFDX2/TransPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000047394") @@ -134919,10 +135435,10 @@ SubClassOf( ObjectSomeValuesFrom( (glycine amidinotransferase, mitochondrial, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-71267") "A glycine amidinotransferase, mitochondrial (human) that has had the transit peptide removed. UniProtKB:P50440, 38-423.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-71267") "A glycine amidinotransferase, mitochondrial (human) that has had the transit peptide removed. UniProtKB:P50440, 44-423.") AnnotationAssertion(Annotation(rdfs:label "PR:000047512 located_in GO:0005758") "Reactome:R-HSA-71267") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000001206") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P50440, 38-423") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P50440, 44-423") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hGATM/TransPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000047512") @@ -136119,6 +136635,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-71933") "A heterogeneous nuclear ribonucleoproteins C1/C2 (human) that has had the initiator methionine removed. UniProtKB:P07910, 2-306.") AnnotationAssertion(Annotation(rdfs:label "PR:000047885 located_in GO:0005654") "Reactome:R-HSA-71933") +AnnotationAssertion(Annotation(rdfs:label "PR:000047885 located_in GO:0005829") "Reactome:R-HSA-9715136") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000081844") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P07910, 2-306") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hHNRNPC/InitMet-") @@ -136449,7 +136966,7 @@ SubClassOf( ObjectSomeValuesFrom( (peptidyl-tRNA hydrolase ICT1, mitochondrial, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368175") Annotation( "Reactome:R-HSA-5624366") "A peptidyl-tRNA hydrolase ICT1, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q14197, 30-206.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368175") Annotation( "Reactome:R-HSA-5624366") "A large ribosomal subunit protein mL62 (human) that has had the transit peptide removed. UniProtKB:Q14197, 30-206.") AnnotationAssertion(Annotation(rdfs:label "PR:000047940 located_in GO:0005759") "Reactome:R-HSA-5368175") AnnotationAssertion(Annotation(rdfs:label "PR:000047940 located_in GO:0005743") "Reactome:R-HSA-5624366") AnnotationAssertion( "TDR:15051") @@ -138249,12 +138766,12 @@ SubClassOf( ObjectSomeValuesFrom( (leukocyte immunoglobulin-like receptor subfamily B member 2, signal peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-197725") "A leukocyte immunoglobulin-like receptor subfamily B member 2 (human) that has had the signal peptide removed. UniProtKB:Q8N423, 22-598.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-197725") "A leukocyte immunoglobulin-like receptor subfamily B member 2 (human) that has had the signal peptide removed. UniProtKB:Q8N423, 22-597.") AnnotationAssertion(Annotation(rdfs:label "PR:000048206 located_in GO:0005886") "Reactome:R-HSA-197725") AnnotationAssertion(Annotation(rdfs:label "PR:000048206 located_in GO:0101003") "Reactome:R-HSA-6801373") AnnotationAssertion(Annotation(rdfs:label "PR:000048206 located_in GO:0070821") "Reactome:R-HSA-6801392") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000014821") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q8N423, 22-598") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q8N423, 22-597") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hLILRB2/SigPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000048206") @@ -138384,6 +138901,7 @@ AnnotationAssertion(Annotation( "Reactome:R-HSA-1017222") AnnotationAssertion(Annotation(rdfs:label "PR:000048226 located_in GO:0005789") "Reactome:R-HSA-5689463") AnnotationAssertion(Annotation(rdfs:label "PR:000048226 located_in GO:0033116") "Reactome:R-HSA-5689821") +AnnotationAssertion(Annotation(rdfs:label "PR:000048226 located_in GO:0000139") "Reactome:R-HSA-9715113") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000017660") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P49257, 31-510") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hLMAN1/SigPep-") @@ -138786,6 +139304,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-2201307") "A lymphocyte antigen 96 (human) that has had the signal peptide removed. UniProtKB:Q9Y6Y9, 19-160.") AnnotationAssertion(Annotation(rdfs:label "PR:000048277 located_in GO:0010008") "Reactome:R-HSA-2201307") +AnnotationAssertion(Annotation(rdfs:label "PR:000048277 located_in GO:0005576") "Reactome:R-HSA-9707658") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000018619") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q9Y6Y9, 19-160") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hLY96/SigPep-") @@ -139415,9 +139934,9 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L1, mitochondrial, transit peptide removed form (human)) +# Class: (large ribosomal subunit protein uL1m, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368196") "A 39S ribosomal protein L1, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q9BYD6, 51-325.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368196") "A large ribosomal subunit protein uL1m (human) that has had the transit peptide removed. UniProtKB:Q9BYD6, 51-325.") AnnotationAssertion(Annotation(rdfs:label "PR:000048417 located_in GO:0005743") "Reactome:R-HSA-5368196") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000252440") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q9BYD6, 51-325") @@ -139425,15 +139944,15 @@ AnnotationAssertion(Annotation( "protein") AnnotationAssertion( "PR:000048417") AnnotationAssertion(rdfs:comment "Category=organism-modification.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L1, mitochondrial, transit peptide removed form (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL1m, transit peptide removed form (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L10, mitochondrial, transit peptide removed form (human)) +# Class: (large ribosomal subunit protein uL10m, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368182") "A 39S ribosomal protein L10, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q7Z7H8, 29-261.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368182") "A large ribosomal subunit protein uL10m (human) that has had the transit peptide removed. UniProtKB:Q7Z7H8, 29-261.") AnnotationAssertion(Annotation(rdfs:label "PR:000048418 located_in GO:0005743") "Reactome:R-HSA-5368182") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000273075") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q7Z7H8, 29-261") @@ -139441,7 +139960,7 @@ AnnotationAssertion(Annotation( "protein") AnnotationAssertion( "PR:000048418") AnnotationAssertion(rdfs:comment "Category=organism-modification.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L10, mitochondrial, transit peptide removed form (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL10m, transit peptide removed form (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -139449,7 +139968,7 @@ SubClassOf( ObjectSomeValuesFrom( (39S ribosomal protein L12, mitochondrial, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368256") "A 39S ribosomal protein L12, mitochondrial (human) that has had the transit peptide removed. UniProtKB:P52815, 46-198.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368256") "A large ribosomal subunit protein bL12m (human) that has had the transit peptide removed. UniProtKB:P52815, 46-198.") AnnotationAssertion(Annotation(rdfs:label "PR:000048419 located_in GO:0005743") "Reactome:R-HSA-5368256") AnnotationAssertion( "TDR:12404") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000030458") @@ -139464,9 +139983,9 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L14, mitochondrial, transit peptide removed form (human)) +# Class: (large ribosomal subunit protein uL14m, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368219") "A 39S ribosomal protein L14, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q6P1L8, 31-145.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368219") "A large ribosomal subunit protein uL14m (human) that has had the transit peptide removed. UniProtKB:Q6P1L8, 31-145.") AnnotationAssertion(Annotation(rdfs:label "PR:000048420 located_in GO:0005743") "Reactome:R-HSA-5368219") AnnotationAssertion( "TDR:3811") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000261134") @@ -139475,15 +139994,15 @@ AnnotationAssertion(Annotation( "protein") AnnotationAssertion( "PR:000048420") AnnotationAssertion(rdfs:comment "Category=organism-modification.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L14, mitochondrial, transit peptide removed form (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL14m, transit peptide removed form (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L2, mitochondrial, transit peptide removed form (human)) +# Class: (large ribosomal subunit protein uL2m, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368170") "A 39S ribosomal protein L2, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q5T653, 61-305.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368170") "A large ribosomal subunit protein uL2m (human) that has had the transit peptide removed. UniProtKB:Q5T653, 61-305.") AnnotationAssertion(Annotation(rdfs:label "PR:000048424 located_in GO:0005743") "Reactome:R-HSA-5368170") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000261640") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q5T653, 61-305") @@ -139491,7 +140010,7 @@ AnnotationAssertion(Annotation( "protein") AnnotationAssertion( "PR:000048424") AnnotationAssertion(rdfs:comment "Category=organism-modification.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L2, mitochondrial, transit peptide removed form (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL2m, transit peptide removed form (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -139499,7 +140018,7 @@ SubClassOf( ObjectSomeValuesFrom( (39S ribosomal protein L21, mitochondrial, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368231") "A 39S ribosomal protein L21, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q7Z2W9, 40-205.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368231") "A large ribosomal subunit protein bL21m (human) that has had the transit peptide removed. UniProtKB:Q7Z2W9, 40-205.") AnnotationAssertion(Annotation(rdfs:label "PR:000048426 located_in GO:0005743") "Reactome:R-HSA-5368231") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000252442") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q7Z2W9, 40-205") @@ -139515,7 +140034,7 @@ SubClassOf( ObjectSomeValuesFrom( (39S ribosomal protein L28, mitochondrial, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368246") "A 39S ribosomal protein L28, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q13084, 56-256.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368246") "A large ribosomal subunit protein bL28m (human) that has had the transit peptide removed. UniProtKB:Q13084, 56-256.") AnnotationAssertion(Annotation(rdfs:label "PR:000048429 located_in GO:0005743") "Reactome:R-HSA-5368246") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000030506") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q13084, 56-256") @@ -139531,7 +140050,7 @@ SubClassOf( ObjectSomeValuesFrom( (39S ribosomal protein L38, mitochondrial, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368202") "A 39S ribosomal protein L38, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q96DV4, 27-380.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368202") "A large ribosomal subunit protein mL38 (human) that has had the transit peptide removed. UniProtKB:Q96DV4, 27-380.") AnnotationAssertion(Annotation(rdfs:label "PR:000048432 located_in GO:0005743") "Reactome:R-HSA-5368202") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000261652") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q96DV4, 27-380") @@ -139547,7 +140066,7 @@ SubClassOf( ObjectSomeValuesFrom( (39S ribosomal protein L52, mitochondrial, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368187") "A 39S ribosomal protein L52, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q86TS9, 24-123.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368187") "A large ribosomal subunit protein mL52 (human) that has had the transit peptide removed. UniProtKB:Q86TS9, 24-123.") AnnotationAssertion(Annotation(rdfs:label "PR:000048439 located_in GO:0005743") "Reactome:R-HSA-5368187") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000273093") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q86TS9, 24-123") @@ -139563,7 +140082,7 @@ SubClassOf( ObjectSomeValuesFrom( (39S ribosomal protein L55, mitochondrial, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368252") "A 39S ribosomal protein L55, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q7Z7F7, 34-128.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5368252") "A large ribosomal subunit protein mL55 (human) that has had the transit peptide removed. UniProtKB:Q7Z7F7, 34-128.") AnnotationAssertion(Annotation(rdfs:label "PR:000048441 located_in GO:0005743") "Reactome:R-HSA-5368252") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000273099") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q7Z7F7, 34-128") @@ -139875,9 +140394,9 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (probable asparagine--tRNA ligase, mitochondrial, transit peptide removed form (human)) +# Class: (asparaginyl-tRNA synthetase, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-379585") "A probable asparagine--tRNA ligase, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q96I59, 15-477.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-379585") "An asparaginyl-tRNA synthetase (human) that has had the transit peptide removed. UniProtKB:Q96I59, 15-477.") AnnotationAssertion(Annotation(rdfs:label "PR:000048515 located_in GO:0005759") "Reactome:R-HSA-379585") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000250722") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q96I59, 15-477") @@ -139885,7 +140404,7 @@ AnnotationAssertion(Annotation( "protein") AnnotationAssertion( "PR:000048515") AnnotationAssertion(rdfs:comment "Category=organism-modification.") -AnnotationAssertion(rdfs:label "probable asparagine--tRNA ligase, mitochondrial, transit peptide removed form (human)") +AnnotationAssertion(rdfs:label "asparaginyl-tRNA synthetase, transit peptide removed form (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -139993,6 +140512,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-60599") "An NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 (human) that has had the initiator methionine removed. UniProtKB:Q16718, 2-116.") AnnotationAssertion(Annotation(rdfs:label "PR:000048542 located_in GO:0005743") "Reactome:R-HSA-60599") +AnnotationAssertion(Annotation(rdfs:label "PR:000048542 located_in GO:0005789") "Reactome:R-HSA-9714749") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000118632") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q16718, 2-116") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNDUFA5/InitMet-") @@ -140257,10 +140777,10 @@ SubClassOf( ObjectSomeValuesFrom( (neuroligin-1, signal peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-6788640") "A neuroligin-1 (human) that has had the signal peptide removed. UniProtKB:Q8N2Q7, 46-840.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-6788640") "A neuroligin-1 (human) that has had the signal peptide removed. UniProtKB:Q8N2Q7, 46-863.") AnnotationAssertion(Annotation(rdfs:label "PR:000048607 located_in GO:0005886") "Reactome:R-HSA-6788640") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000008640") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q8N2Q7, 46-840") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q8N2Q7, 46-863") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNLGN1/SigPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000048607") @@ -140305,10 +140825,10 @@ SubClassOf( ObjectSomeValuesFrom( (neuromedin-B, signal peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-8857550") "A neuromedin-B (human) that has had the signal peptide removed. UniProtKB:Q14956, 22-572.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-8857550") "A neuromedin-B (human) that has had the signal peptide removed. UniProtKB:Q14956, 23-572.") AnnotationAssertion(Annotation(rdfs:label "PR:000048614 located_in GO:0005886") "Reactome:R-HSA-8857550") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000024709") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q14956, 22-572") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q14956, 23-572") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNMB/SigPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000048614") @@ -140322,10 +140842,10 @@ SubClassOf( ObjectSomeValuesFrom( (nucleoside diphosphate kinase, mitochondrial, transit peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-60026") "A nucleoside diphosphate kinase, mitochondrial (human) that has had the transit peptide removed. UniProtKB:O00746, 34-187.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-60026") "A nucleoside diphosphate kinase, mitochondrial (human) that has had the transit peptide removed. UniProtKB:O00746, 29-187.") AnnotationAssertion(Annotation(rdfs:label "PR:000048617 located_in GO:0005743") "Reactome:R-HSA-60026") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000019432") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O00746, 34-187") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O00746, 29-187") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNME4/TransPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000048617") @@ -140351,9 +140871,9 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (nitric oxide synthase, endothelial, initiator methionine removed form (human)) +# Class: (nitric oxide synthase 3, initiator methionine removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-202114") "A nitric oxide synthase, endothelial (human) that has had the initiator methionine removed. UniProtKB:P29474, 2-1203.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-202114") "A nitric oxide synthase 3 (human) that has had the initiator methionine removed. UniProtKB:P29474, 2-1203.") AnnotationAssertion(Annotation(rdfs:label "PR:000048622 located_in GO:0005829") "Reactome:R-HSA-202114") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000170943") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P29474, 2-1203") @@ -140361,7 +140881,7 @@ AnnotationAssertion(Annotation( "protein") AnnotationAssertion( "PR:000048622") AnnotationAssertion(rdfs:comment "Category=organism-modification.") -AnnotationAssertion(rdfs:label "nitric oxide synthase, endothelial, initiator methionine removed form (human)") +AnnotationAssertion(rdfs:label "nitric oxide synthase 3, initiator methionine removed form (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -140372,6 +140892,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-5654987") "A nuclear protein localization protein 4 homolog (human) that has had the initiator methionine removed. UniProtKB:Q8TAT6, 2-608.") AnnotationAssertion(Annotation(rdfs:label "PR:000048627 located_in GO:0005654") "Reactome:R-HSA-5654987") +AnnotationAssertion(Annotation(rdfs:label "PR:000048627 located_in GO:0005829") "Reactome:R-HSA-9755492") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000057941") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q8TAT6, 2-608") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNPLOC4/InitMet-") @@ -140623,6 +141144,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-3321845") "A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (human) that has had the initiator methionine removed. UniProtKB:O15294, 2-1046.") AnnotationAssertion(Annotation(rdfs:label "PR:000048665 located_in GO:0005654") "Reactome:R-HSA-3321845") +AnnotationAssertion(Annotation(rdfs:label "PR:000048665 located_in GO:0005829") "Reactome:R-HSA-9687814") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000191772") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O15294, 2-1046") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hOGT/InitMet-") @@ -140744,6 +141266,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-72008") "A polyadenylate-binding protein 2 (human) that has had the initiator methionine removed. UniProtKB:Q86U42, 2-306.") AnnotationAssertion(Annotation(rdfs:label "PR:000048680 located_in GO:0005654") "Reactome:R-HSA-72008") +AnnotationAssertion(Annotation(rdfs:label "PR:000048680 located_in GO:0005829") "Reactome:R-HSA-9822424") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000081711") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q86U42, 2-306") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPABPN1/InitMet-") @@ -140926,10 +141449,10 @@ SubClassOf( ObjectSomeValuesFrom( (programmed cell death protein 1, signal peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-197604") "A programmed cell death protein 1 (human) that has had the signal peptide removed. UniProtKB:Q15116, 21-288.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-197604") "A programmed cell death protein 1 (human) that has had the signal peptide removed. UniProtKB:Q15116, 24-288.") AnnotationAssertion(Annotation(rdfs:label "PR:000048711 located_in GO:0005886") "Reactome:R-HSA-197604") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000014892") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q15116, 21-288") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q15116, 24-288") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPDCD1/SigPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000048711") @@ -141817,6 +142340,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-6806776") "A peptidyl-prolyl cis-trans isomerase H (human) that has had the initiator methionine removed. UniProtKB:O43447, 2-177.") AnnotationAssertion(Annotation(rdfs:label "PR:000048860 located_in GO:0005654") "Reactome:R-HSA-6806776") +AnnotationAssertion(Annotation(rdfs:label "PR:000048860 located_in GO:0005829") "Reactome:R-HSA-9728791") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000064162") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O43447, 2-177") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPPIH/InitMet-") @@ -142138,11 +142662,11 @@ SubClassOf( ObjectSomeValuesFrom( (receptor-type tyrosine-protein phosphatase C, signal peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-197931") "A receptor-type tyrosine-protein phosphatase C (human) that has had the signal peptide removed. UniProtKB:P08575, 24-1304.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-197931") "A receptor-type tyrosine-protein phosphatase C (human) that has had the signal peptide removed. UniProtKB:P08575, 26-1304.") AnnotationAssertion(Annotation(rdfs:label "PR:000048962 located_in GO:0005886") "Reactome:R-HSA-197931") AnnotationAssertion(Annotation(rdfs:label "PR:000048962 located_in GO:0030667") "Reactome:R-HSA-6806150") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000025470") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P08575, 24-1304") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P08575, 26-1304") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPTPRC/SigPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000048962") @@ -142219,22 +142743,6 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (peptidyl-tRNA hydrolase 2, mitochondrial, transit peptide removed form (human)) - -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5696909") "A peptidyl-tRNA hydrolase 2, mitochondrial (human) that has had the transit peptide removed. UniProtKB:Q9Y3E5, 63-179.") -AnnotationAssertion(Annotation(rdfs:label "PR:000048969 located_in GO:0005741") "Reactome:R-HSA-5696909") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000029862") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q9Y3E5, 63-179") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPTRH2/TransPep-") -AnnotationAssertion( "protein") -AnnotationAssertion( "PR:000048969") -AnnotationAssertion(rdfs:comment "Category=organism-modification.") -AnnotationAssertion(rdfs:label "peptidyl-tRNA hydrolase 2, mitochondrial, transit peptide removed form (human)") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (peptidyl-tRNA hydrolase 2, mitochondrial, transit peptide removed ubiquitinated form (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-6783190") "A peptidyl-tRNA hydrolase 2, mitochondrial (human) that has had the transit peptide removed and that includes at least one ubiquitinated lysine. UniProtKB:Q9Y3E5, 63-179, MOD:01148.") @@ -142248,7 +142756,7 @@ AnnotationAssertion(rdfs:comment " AnnotationAssertion(rdfs:label "peptidyl-tRNA hydrolase 2, mitochondrial, transit peptide removed ubiquitinated form (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -142689,7 +143197,7 @@ SubClassOf( ObjectSomeValuesFrom( (60S ribosomal protein L11, initiator methionine removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-72406") "A 60S ribosomal protein L11 (human) that has had the initiator methionine removed. UniProtKB:P62913, 2-178.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-72406") "A large ribosomal subunit protein uL5 (human) that has had the initiator methionine removed. UniProtKB:P62913, 2-178.") AnnotationAssertion(Annotation(rdfs:label "PR:000049069 located_in GO:0005829") "Reactome:R-HSA-72406") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000125082") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P62913, 2-178") @@ -142706,7 +143214,7 @@ SubClassOf( ObjectSomeValuesFrom( (60S ribosomal protein L38, initiator methionine removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-72470") "A 60S ribosomal protein L38 (human) that has had the initiator methionine removed. UniProtKB:P63173, 2-70.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-72470") "A large ribosomal subunit protein eL38 (human) that has had the initiator methionine removed. UniProtKB:P63173, 2-70.") AnnotationAssertion(Annotation(rdfs:label "PR:000049089 located_in GO:0005829") "Reactome:R-HSA-72470") AnnotationAssertion( "TDR:1046") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000215434") @@ -142721,9 +143229,9 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L5, initiator methionine removed form (human)) +# Class: (large ribosomal subunit protein uL18, initiator methionine removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-72482") "A 60S ribosomal protein L5 (human) that has had the initiator methionine removed. UniProtKB:P46777, 2-297.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-72482") "A large ribosomal subunit protein uL18 (human) that has had the initiator methionine removed. UniProtKB:P46777, 2-297.") AnnotationAssertion(Annotation(rdfs:label "PR:000049092 located_in GO:0005829") "Reactome:R-HSA-72482") AnnotationAssertion( "TDR:6985") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000131431") @@ -142732,7 +143240,7 @@ AnnotationAssertion(Annotation( "protein") AnnotationAssertion( "PR:000049092") AnnotationAssertion(rdfs:comment "Category=organism-modification.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L5, initiator methionine removed form (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL18, initiator methionine removed form (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -142808,7 +143316,7 @@ SubClassOf( ObjectSomeValuesFrom( (40S ribosomal protein S12, initiator methionine removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-6798715") Annotation( "Reactome:R-HSA-72329") "A 40S ribosomal protein S12 (human) that has had the initiator methionine removed. UniProtKB:P25398, 2-132.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-6798715") Annotation( "Reactome:R-HSA-72329") "A small ribosomal subunit protein eS12 (human) that has had the initiator methionine removed. UniProtKB:P25398, 2-132.") AnnotationAssertion(Annotation(rdfs:label "PR:000049106 located_in GO:0005654") "Reactome:R-HSA-6798715") AnnotationAssertion(Annotation(rdfs:label "PR:000049106 located_in GO:0005829") "Reactome:R-HSA-72329") AnnotationAssertion( "TDR:2194") @@ -142827,7 +143335,7 @@ SubClassOf( ObjectSomeValuesFrom( (40S ribosomal protein S14, initiator methionine removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-6790669") Annotation( "Reactome:R-HSA-72333") "A 40S ribosomal protein S14 (human) that has had the initiator methionine removed. UniProtKB:P62263, 2-151.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-6790669") Annotation( "Reactome:R-HSA-72333") "A small ribosomal subunit protein uS11 (human) that has had the initiator methionine removed. UniProtKB:P62263, 2-151.") AnnotationAssertion(Annotation(rdfs:label "PR:000049108 located_in GO:0005654") "Reactome:R-HSA-6790669") AnnotationAssertion(Annotation(rdfs:label "PR:000049108 located_in GO:0005829") "Reactome:R-HSA-72333") AnnotationAssertion( "TDR:1391") @@ -142846,7 +143354,7 @@ SubClassOf( ObjectSomeValuesFrom( (40S ribosomal protein S19, initiator methionine removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-6798710") Annotation( "Reactome:R-HSA-72343") "A 40S ribosomal protein S19 (human) that has had the initiator methionine removed. UniProtKB:P39019, 2-145.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-6798710") Annotation( "Reactome:R-HSA-72343") "A small ribosomal subunit protein eS19 (human) that has had the initiator methionine removed. UniProtKB:P39019, 2-145.") AnnotationAssertion(Annotation(rdfs:label "PR:000049113 located_in GO:0005654") "Reactome:R-HSA-6798710") AnnotationAssertion(Annotation(rdfs:label "PR:000049113 located_in GO:0005829") "Reactome:R-HSA-72343") AnnotationAssertion( "TDR:2119") @@ -142865,7 +143373,7 @@ SubClassOf( ObjectSomeValuesFrom( (40S ribosomal protein S20, initiator methionine removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-6798727") Annotation( "Reactome:R-HSA-72349") "A 40S ribosomal protein S20 (human) that has had the initiator methionine removed. UniProtKB:P60866, 2-119.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-6798727") Annotation( "Reactome:R-HSA-72349") "A small ribosomal subunit protein uS10 (human) that has had the initiator methionine removed. UniProtKB:P60866, 2-119.") AnnotationAssertion(Annotation(rdfs:label "PR:000049114 located_in GO:0005654") "Reactome:R-HSA-6798727") AnnotationAssertion(Annotation(rdfs:label "PR:000049114 located_in GO:0005829") "Reactome:R-HSA-72349") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000146683") @@ -142883,7 +143391,7 @@ SubClassOf( ObjectSomeValuesFrom( (40S ribosomal protein S4, X isoform, initiator methionine removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-6798713") Annotation( "Reactome:R-HSA-72375") "A 40S ribosomal protein S4, X isoform (human) that has had the initiator methionine removed. UniProtKB:P62701, 2-263.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-6798713") Annotation( "Reactome:R-HSA-72375") "A small ribosomal subunit protein eS4, X isoform (human) that has had the initiator methionine removed. UniProtKB:P62701, 2-263.") AnnotationAssertion(Annotation(rdfs:label "PR:000049120 located_in GO:0005654") "Reactome:R-HSA-6798713") AnnotationAssertion(Annotation(rdfs:label "PR:000049120 located_in GO:0005829") "Reactome:R-HSA-72375") AnnotationAssertion( "TDR:1461") @@ -142918,10 +143426,10 @@ SubClassOf( ObjectSomeValuesFrom( (tyrosine-protein kinase RYK, signal peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-3006746") "A tyrosine-protein kinase RYK (human) that has had the signal peptide removed. UniProtKB:P34925, 26-604.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-3006746") "A tyrosine-protein kinase RYK (human) that has had the signal peptide removed. UniProtKB:P34925, 26-607.") AnnotationAssertion(Annotation(rdfs:label "PR:000049147 located_in GO:0005886") "Reactome:R-HSA-3006746") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000024464") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P34925, 26-604") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P34925, 26-607") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRYK/SigPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000049147") @@ -143477,6 +143985,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-5694086") "A serine hydroxymethyltransferase, mitochondrial (human) that has had the transit peptide removed. UniProtKB:P34897, 30-504.") AnnotationAssertion(Annotation(rdfs:label "PR:000049237 located_in GO:0005743") "Reactome:R-HSA-5694086") +AnnotationAssertion(Annotation(rdfs:label "PR:000049237 located_in GO:0005829") "Reactome:R-HSA-9714752") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000032562") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P34897, 30-504") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSHMT2/TransPep-") @@ -143862,10 +144371,10 @@ SubClassOf( ObjectSomeValuesFrom( (sphingomyelin phosphodiesterase, signal peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-1605710") "A sphingomyelin phosphodiesterase (human) that has had the signal peptide removed. UniProtKB:P17405, 47-629.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-1605710") "A sphingomyelin phosphodiesterase (human) that has had the signal peptide removed. UniProtKB:P17405, 47-631.") AnnotationAssertion(Annotation(rdfs:label "PR:000049300 located_in GO:0043202") "Reactome:R-HSA-1605710") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000002323") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P17405, 47-629") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P17405, 47-631") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSMPD1/SigPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000049300") @@ -144279,10 +144788,10 @@ SubClassOf( ObjectSomeValuesFrom( (SCO-spondin, signal peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5173055") "A SCO-spondin (human) that has had the signal peptide removed. UniProtKB:A2VEC9, 18-5147.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-5173055") "A SCO-spondin (human) that has had the signal peptide removed. UniProtKB:A2VEC9, 18-5150.") AnnotationAssertion(Annotation(rdfs:label "PR:000049353 located_in GO:0005788") "Reactome:R-HSA-5173055") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_5000223757") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:A2VEC9, 18-5147") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:A2VEC9, 18-5150") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSSPO/SigPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000049353") @@ -144552,6 +145061,7 @@ AnnotationAssertion(Annotation(rdfs:label "PR:000049410 located_in GO:0005576") AnnotationAssertion(Annotation(rdfs:label "PR:000049410 located_in GO:0005768") "Reactome:R-HSA-3000100") AnnotationAssertion(Annotation(rdfs:label "PR:000049410 located_in GO:0043202") "Reactome:R-HSA-3000262") AnnotationAssertion(Annotation(rdfs:label "PR:000049410 located_in GO:0005576") "Reactome:R-HSA-3315449") +AnnotationAssertion(Annotation(rdfs:label "PR:000049410 located_in GO:0005886") "Reactome:R-HSA-9758895") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000005564") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P20062, 19-427") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hTCN2/SigPep-") @@ -145350,6 +145860,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-8850859") "A transformer-2 protein homolog beta (human) that has had the initiator methionine removed. UniProtKB:P62995, 2-288.") AnnotationAssertion(Annotation(rdfs:label "PR:000049533 located_in GO:0005654") "Reactome:R-HSA-8850859") +AnnotationAssertion(Annotation(rdfs:label "PR:000049533 located_in GO:0005829") "Reactome:R-HSA-9715137") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000081983") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P62995, 2-288") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hTRA2B/InitMet-") @@ -145755,6 +146266,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-174930") "A UDP-glucuronosyltransferase 2A1 (human) that has had the signal peptide removed. UniProtKB:P0DTE4, 21-527.") AnnotationAssertion(Annotation(rdfs:label "PR:000049604 located_in GO:0005789") "Reactome:R-HSA-174930") +AnnotationAssertion(Annotation(rdfs:label "PR:000049604 located_in GO:0005789") "Reactome:R-HSA-9698803") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000036023") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P0DTE4, 21-527") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hUGT2A1/SigPep-") @@ -145973,6 +146485,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-429718") "A vesicle-associated membrane protein-associated protein B/C (human) that has had the initiator methionine removed. UniProtKB:O95292, 2-243.") AnnotationAssertion(Annotation(rdfs:label "PR:000049639 located_in GO:0005789") "Reactome:R-HSA-429718") +AnnotationAssertion(Annotation(rdfs:label "PR:000049639 located_in GO:0000139") "Reactome:R-HSA-9715115") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000213473") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:O95292, 2-243") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hVAPB/InitMet-") @@ -146085,7 +146598,7 @@ SubClassOf( ObjectSomeValuesFrom( (vascular endothelial growth factor A, signal peptide removed form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-2975974") Annotation( "Reactome:R-HSA-3132764") "A vascular endothelial growth factor A (human) that has had the signal peptide removed. UniProtKB:P15692, 27-232.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "Reactome:R-HSA-2975974") Annotation( "Reactome:R-HSA-3132764") "A vascular endothelial growth factor A, long form (human) that has had the signal peptide removed. UniProtKB:P15692, 27-232.") AnnotationAssertion(Annotation(rdfs:label "PR:000049655 located_in GO:0005576") "Reactome:R-HSA-2975974") AnnotationAssertion(Annotation(rdfs:label "PR:000049655 located_in GO:0031093") "Reactome:R-HSA-3132764") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000023386") @@ -146393,6 +146906,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "Reactome:R-HSA-72041") "A Y-box-binding protein 1 (human) that has had the initiator methionine removed. UniProtKB:P67809, 2-324.") AnnotationAssertion(Annotation(rdfs:label "PR:000049718 located_in GO:0005654") "Reactome:R-HSA-72041") AnnotationAssertion(Annotation(rdfs:label "PR:000049718 located_in GO:0005576") "Reactome:R-HSA-9017791") +AnnotationAssertion(Annotation(rdfs:label "PR:000049718 located_in GO:0005829") "Reactome:R-HSA-9736840") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000100219") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P67809, 2-324") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hYBX1/InitMet-") @@ -146438,6 +146952,16 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (amino-acid residue related to L-asparagine) + +AnnotationAssertion(Annotation( "PRO:DAN") "An amino-acid residue that is either a modified or unmodified L-asparagine residue.") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000049912") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "amino-acid residue related to L-asparagine") +EquivalentClasses( ObjectUnionOf( )) +SubClassOf( ) + # Class: (ion channel protein) AnnotationAssertion(Annotation( "IUPHARfam:689") Annotation( "PRO:XQ") "A channel protein that has ion channel activity. An ion channel enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.") @@ -146777,6 +147301,7 @@ SubClassOf( (tryptase alpha/beta-1, mature form (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q15661") "A tryptase alpha/beta-1 (human) that has had the signal peptide and propeptide removed. Example: UniProtKB:Q15661-1, 31-275.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q15661, 31-275") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hTPSAB1/mature") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000027480") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:Q15661-1, 31-275") @@ -146794,6 +147319,7 @@ SubClassOf( ObjectSomeValuesFrom( (small ubiquitin-related modifier 1, mature form (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P63165") "A small ubiquitin-related modifier 1 (human) that has had the initiator methionine and propeptide removed. Example: UniProtKB:P63165-1, 2-97.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P63165, 2-97") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSUMO1/mature") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000035939") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P63165-1, 2-97") @@ -146811,6 +147337,7 @@ SubClassOf( ObjectSomeValuesFrom( (small ubiquitin-related modifier 2, mature form (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P61956") "A small ubiquitin-related modifier 2 (human) that has had the propeptide removed. Example: UniProtKB:P61956-1, 1-93.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P61956, 1-93") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSUMO2/mature") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000035949") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P61956-1, 1-93") @@ -146827,6 +147354,7 @@ SubClassOf( ObjectSomeValuesFrom( (small ubiquitin-related modifier 3, mature form (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P55854") "A small ubiquitin-related modifier 3 (human) that has had the propeptide removed. Example: UniProtKB:P55854-1, 1-92.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P55854, 1-92") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSUMO3/mature") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000035957") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P55854-1, 1-92") @@ -146860,6 +147388,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DAN") "A prostatic acid phosphatase, signal peptide removed form in human. Example: UniProtKB:P15309-1, 33-386.") AnnotationAssertion(Annotation(rdfs:label "PR:000050082 located_in GO:0005886") "Reactome:R-HSA-3229238") AnnotationAssertion(Annotation(rdfs:label "PR:000050082 located_in GO:0035577") "Reactome:R-HSA-6799214") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P15309, 33-386") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hACPP/SigPep-") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PRO_0000023963") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P15309-1, 33-386") @@ -146935,7 +147464,7 @@ SubClassOf( (IgA1 immunoglobulin complex, circulating (human)) -AnnotationAssertion(Annotation( "GOC:add") Annotation( "ISBN:0781765196") Annotation( "PMID:16362985") Annotation( "PRO:ADD") "An IgA immunoglobulin complex, circulating that in monomeric form is composed of two identical immunoglobulin heavy chains of the secretory isoform of the IgA1 isotype and two identical immunoglobulin light chains (kappa or lambda), held together by disulfide bonds, sometimes complexed with J chain or J chain and secretory component, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph.") +AnnotationAssertion(Annotation( "GOC:add") Annotation( "ISBN:0781765196") Annotation( "PMID:16362985") Annotation( "PRO:ADD") "An IgA immunoglobulin complex, circulating in human that is composed of (in monomeric form) two identical immunoglobulin heavy chains of the secretory isoform of the IgA1 isotype and two identical immunoglobulin light chains (kappa or lambda), held together by disulfide bonds, sometimes complexed with J chain or J chain and secretory component, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph.") AnnotationAssertion(Annotation( "GOC:add") Annotation( "PRO:ADD") "IgA antibody (human)") AnnotationAssertion(Annotation( "GOC:add") Annotation( "PRO:ADD") "IgA1 antibody (human)") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "hIgA1/circulating") @@ -147734,7 +148263,7 @@ SubClassOf( (hemoglobin A1c) -AnnotationAssertion(Annotation( "PMID:9732983") Annotation( "PRO:DAN") Annotation( "Wikipedia:Glycated_hemoglobin") "A hemoglobin complex that is composed of at least one beta-N-1-deoxy fructosyl hemoglobin subunit, in which the glycan is attached to the N-terminal valine (after initiator methionine removal) of one or both beta subunits.") +AnnotationAssertion(Annotation( "PMID:16112961") Annotation( "PMID:9732983") Annotation( "PRO:DAN") Annotation( "Wikipedia:Glycated_hemoglobin") "A hemoglobin complex that is composed of at least one beta-N-1-deoxy fructosyl hemoglobin subunit, in which the glycan is attached to the N-terminal valine (after initiator methionine removal) of one or both beta subunits.") AnnotationAssertion(Annotation( "PMID:9732983") "glycated hemoglobin") AnnotationAssertion(Annotation( "PMID:9732983") "glycohemoglobin") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "HbA1c") @@ -147745,8 +148274,9 @@ AnnotationAssertion(rdfs:comment " AnnotationAssertion(rdfs:label "hemoglobin A1c") SubClassOf( ) SubClassOf( ObjectMinCardinality(1 )) -SubClassOf( ObjectExactCardinality(2 )) -SubClassOf( ObjectMaxCardinality(1 )) +SubClassOf( ObjectExactCardinality(2 )) +SubClassOf( ObjectExactCardinality(2 )) +SubClassOf( ObjectExactCardinality(4 )) SubClassOf( ObjectMaxCardinality(2 )) # Class: (medium-wave-sensitive opsin (human)) @@ -147766,21 +148296,6 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (protein-containing material entity) - -AnnotationAssertion(Annotation( "PRO:DAN") "A material entity that minimally consists of a protein.") -AnnotationAssertion(Annotation( "PRO:DAN") "protein") -AnnotationAssertion(Annotation( "PRO:DAN") "protein aggregate") -AnnotationAssertion(Annotation( "PRO:DAN") "protein complex") -AnnotationAssertion(Annotation( "PRO:DAN") "protein-containing complex") -AnnotationAssertion( "protein") -AnnotationAssertion( "PR:000050567") -AnnotationAssertion(rdfs:comment "Note: This includes single proteins and derivatives thereof (PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050566).") -AnnotationAssertion(rdfs:label "protein-containing material entity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (spermatogenesis-associated protein 33) AnnotationAssertion(Annotation( "PRO:DAN") Annotation( "PRO:KRC") "A protein that is a translation product of the human SPATA33 gene or a 1:1 ortholog thereof.") @@ -147838,7 +148353,6 @@ SubClassOf( ObjectMinCardinality(2 AnnotationAssertion(Annotation( "PRO:DAN") "A small ubiquitin-related modifier that has had the initiator methionine and propeptide removed. Example: UniProtKB:P63165-1, 2-97.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "SUMO/mature") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P63165-1, 2-97") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000059633") AnnotationAssertion(rdfs:comment "Category=modification.") @@ -147970,16 +148484,18 @@ AnnotationAssertion(rdfs:label "po EquivalentClasses( ObjectUnionOf( )) SubClassOf( ) -# Class: (protein Frey) +# Class: (protein Frey 1) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human C11orf94 gene or a 1:1 ortholog thereof.") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "C11orf94") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human FREY1 gene or a 1:1 ortholog thereof.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "FREY1") +AnnotationAssertion( "Frey regulator of sperm-oocyte fusion 1") AnnotationAssertion( "protein C11orf94") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( ) "C11orf94") AnnotationAssertion(Annotation( ) "FREY") AnnotationAssertion( "PR:000059732") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "protein Frey") +AnnotationAssertion(rdfs:label "protein Frey 1") AnnotationAssertion( ) SubClassOf( ) @@ -148069,17 +148585,18 @@ AnnotationAssertion(rdfs:label "si AnnotationAssertion( ) SubClassOf( ) -# Class: (HUWE1-associated protein modifying stress responses) +# Class: (HUWE1-associated protein modifying stress responses 1) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human C16orf72 gene or a 1:1 ortholog thereof.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "HAPSTR1") +AnnotationAssertion( "HUWE1-associated protein modifying stress responses") AnnotationAssertion( "telomere attrition and p53 response 1 protein") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "C16orf72") AnnotationAssertion(Annotation( ) "TAPR1") AnnotationAssertion( "PR:000059782") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "HUWE1-associated protein modifying stress responses") +AnnotationAssertion(rdfs:label "HUWE1-associated protein modifying stress responses 1") AnnotationAssertion( ) SubClassOf( ) @@ -148094,14 +148611,17 @@ AnnotationAssertion(rdfs:label "UP AnnotationAssertion( ) SubClassOf( ) -# Class: (UPF0692 protein C19orf54) +# Class: (actin maturation protease) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human C19orf54 gene or a 1:1 ortholog thereof.") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "C19orf54") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human ACTMAP gene or a 1:1 ortholog thereof.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "ACTMAP") +AnnotationAssertion( "UPF0692 protein C19orf54") +AnnotationAssertion( "actin aminopeptidase ACTMAP") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( ) "C19orf54") AnnotationAssertion( "PR:000059810") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "UPF0692 protein C19orf54") +AnnotationAssertion(rdfs:label "actin maturation protease") AnnotationAssertion( ) SubClassOf( ) @@ -148894,7 +149414,6 @@ SubClassOf( "PRO:DAN") "A small ubiquitin-related modifier 1 that has had the initiator methionine and propeptide removed. Example: UniProtKB:P63165-1, 2-97.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "SUMO1/mature") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P63165-1, 2-97") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000060213") AnnotationAssertion(rdfs:comment "Category=modification. Requested by=Reactome.") @@ -148908,7 +149427,6 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DAN") "A small ubiquitin-related modifier 2 that has had the propeptide removed. Example: UniProtKB:P61956-1, 1-93.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "SUMO2/mature") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P61956-1, 1-93") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000060214") AnnotationAssertion(rdfs:comment "Category=modification. Requested by=Reactome.") @@ -148921,7 +149439,6 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DAN") "A small ubiquitin-related modifier 3 that has had the propeptide removed. Example: UniProtKB:P55854-1, 1-92.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "SUMO3/mature") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "UniProtKB:P55854-1, 1-92") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000060215") AnnotationAssertion(rdfs:comment "Category=modification. Requested by=Reactome.") @@ -149131,9 +149648,24 @@ AnnotationAssertion( "PR:000060229") AnnotationAssertion(rdfs:comment "Category=organism-polymer. Requested by=Reactome.") AnnotationAssertion(rdfs:label "monoubiquitin (human)") -EquivalentClasses( ObjectIntersectionOf( ObjectExactCardinality(1 ))) +EquivalentClasses( ObjectIntersectionOf( ObjectExactCardinality(1 ))) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectExactCardinality(1 )) +SubClassOf( ObjectExactCardinality(1 )) + +# Class: (protein-containing molecular entity) + +AnnotationAssertion(Annotation( "PRO:DAN") "A molecular entity that minimally consists of a protein.") +AnnotationAssertion(Annotation( "PRO:DAN") "protein") +AnnotationAssertion(Annotation( "PRO:DAN") "protein aggregate") +AnnotationAssertion(Annotation( "PRO:DAN") "protein complex") +AnnotationAssertion(Annotation( "PRO:DAN") "protein-containing complex") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000064867") +AnnotationAssertion(rdfs:comment "Note: This includes single proteins and derivatives thereof (PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050565).") +AnnotationAssertion(rdfs:label "protein-containing molecular entity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lymphocyte antigen 96 (chicken)) @@ -149213,7 +149745,9 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:A0FKN5") Annotation( "PRO:DAN") "A prestin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:A0FKN5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SLC26A5") +AnnotationAssertion(Annotation( "UniProtKB:A0FKN5") "solute carrier family 26 member 5 (chicken)") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:A0FKN5") Annotation( ) "SLC26A5") AnnotationAssertion( "PR:A0FKN5") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "prestin (chicken)") @@ -149318,7 +149852,7 @@ SubClassOf( ObjectSomeValuesFrom( (junctional adhesion protein A (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR12231:SF4") Annotation( "PRO:DNx") "A junctional adhesion molecule A that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:A1E345") Annotation( "PRO:DNx") "A junctional adhesion molecule A that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:A1E345") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-F11R") AnnotationAssertion( "protein") @@ -149361,11 +149895,13 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Fas apoptotic inhibitory molecule 3 (mouse)) +# Class: (immunoglobulin mu Fc receptor (mouse)) -AnnotationAssertion(Annotation( "OMA:A1KXC4") Annotation( "PRO:DNx") "A Fas apoptotic inhibitory molecule 3 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:A1KXC4") Annotation( "PRO:DNx") "An immunoglobulin mu Fc receptor that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:A1KXC4") -AnnotationAssertion(Annotation( "UniProtKB:A1KXC4") "IgM Fc fragment receptor (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:A1KXC4") "FAIM3 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:A1KXC4") "Fas apoptotic inhibitory molecule 3 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:A1KXC4") "IgM FcR (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mFCMR") AnnotationAssertion(Annotation( "UniProtKB:A1KXC4") "regulator of Fas-induced apoptosis Toso (mouse)") AnnotationAssertion( "protein") @@ -149374,7 +149910,7 @@ AnnotationAssertion(Annotation( "UniProtKB:A1KXC4") Annotation( ) "Toso") AnnotationAssertion( "PR:A1KXC4") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "Fas apoptotic inhibitory molecule 3 (mouse)") +AnnotationAssertion(rdfs:label "immunoglobulin mu Fc receptor (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -149822,7 +150358,7 @@ SubClassOf( ObjectSomeValuesFrom( (endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase (mouse)) -AnnotationAssertion(Annotation( "OMA:A2AJ15") Annotation( "PANTHER:PTHR11742:SF7") Annotation( "PRO:DNx") "An endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:A2AJ15") Annotation( "PRO:DNx") "An endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:A2AJ15") AnnotationAssertion(Annotation( "UniProtKB:A2AJ15") "ER alpha-1,2-mannosidase (mouse)") AnnotationAssertion(Annotation( "UniProtKB:A2AJ15") "ER mannosidase 1 (mouse)") @@ -150089,7 +150625,7 @@ SubClassOf( ObjectSomeValuesFrom( (isthmin-1 (mouse)) -AnnotationAssertion(Annotation( "OMA:A2ATD1") Annotation( "PANTHER:PTHR11036:SF47") Annotation( "PRO:DNx") "An isthmin-1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:A2ATD1") Annotation( "PRO:DNx") "An isthmin-1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:A2ATD1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mISM1") AnnotationAssertion( "protein") @@ -150106,7 +150642,7 @@ SubClassOf( ObjectSomeValuesFrom( (kelch-like protein 41 (mouse)) -AnnotationAssertion(Annotation( "OMA:A2AUC9") Annotation( "PANTHER:PTHR24413:SF107") Annotation( "PRO:DNx") "A kelch-like protein 41 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:A2AUC9") Annotation( "PRO:DNx") "A kelch-like protein 41 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:A2AUC9") AnnotationAssertion(Annotation( "UniProtKB:A2AUC9") "kelch repeat and BTB domain-containing protein 10 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mKLHL41") @@ -150194,7 +150730,7 @@ SubClassOf( ObjectSomeValuesFrom( (AT-rich interactive domain-containing protein 1A (mouse)) -AnnotationAssertion(Annotation( "OMA:A2BH40") Annotation( "PANTHER:PTHR12656:SF4") Annotation( "PRO:DNx") "An AT-rich interactive domain-containing protein 1A that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:A2BH40") Annotation( "PRO:DNx") "An AT-rich interactive domain-containing protein 1A that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:A2BH40") AnnotationAssertion(Annotation( "UniProtKB:A2BH40") "ARID domain-containing protein 1A (mouse)") AnnotationAssertion(Annotation( "UniProtKB:A2BH40") "BAF250 (mouse)") @@ -150651,7 +151187,7 @@ SubClassOf( ObjectSomeValuesFrom( (piwi-like protein 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:A6N7Y9") Annotation( "PANTHER:PTHR22892:SF12") Annotation( "PRO:DNx") "A piwi-like protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:A6N7Y9") Annotation( "PRO:DNx") "A piwi-like protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:A6N7Y9") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PIWIL1") AnnotationAssertion( "protein") @@ -151280,6 +151816,7 @@ SubClassOf( ObjectSomeValuesFrom( (espin (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:B1AK53") "An espin that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:B1AK53 located_in GO:0005829") "Reactome:R-HSA-9662418") AnnotationAssertion( "UniProtKB:B1AK53") AnnotationAssertion(Annotation( "UniProtKB:B1AK53") "autosomal recessive deafness type 36 protein (human)") AnnotationAssertion(Annotation( "UniProtKB:B1AK53") "ectoplasmic specialization protein (human)") @@ -151378,7 +151915,7 @@ SubClassOf( ObjectSomeValuesFrom( (kinesin-like protein KIF16B (mouse)) -AnnotationAssertion(Annotation( "OMA:B1AVY7") Annotation( "PANTHER:PTHR24115:SF178") Annotation( "PRO:DNx") "A kinesin-like protein KIF16B that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:B1AVY7") Annotation( "PRO:DNx") "A kinesin-like protein KIF16B that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:B1AVY7") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mKIF16B") AnnotationAssertion( "protein") @@ -151395,7 +151932,7 @@ SubClassOf( ObjectSomeValuesFrom( (uracil phosphoribosyltransferase homolog (mouse)) -AnnotationAssertion(Annotation( "OMA:B1AVZ0") Annotation( "PANTHER:PTHR10285:SF1") Annotation( "PRO:DNx") "A uracil phosphoribosyltransferase that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:B1AVZ0") Annotation( "PRO:DNx") "A uracil phosphoribosyltransferase that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:B1AVZ0") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mUPRT") AnnotationAssertion( "protein") @@ -151411,7 +151948,7 @@ SubClassOf( ObjectSomeValuesFrom( (prostate-associated microseminoprotein (mouse)) -AnnotationAssertion(Annotation( "OMA:B1AWI6") Annotation( "PANTHER:PTHR10500:SF0") Annotation( "PRO:DNx") "A prostate-associated microseminoprotein that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:B1AWI6") Annotation( "PRO:DNx") "A prostate-associated microseminoprotein that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:B1AWI6") AnnotationAssertion(Annotation( "UniProtKB:B1AWI6") "PC3-secreted microprotein homolog (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMSMP") @@ -151533,7 +152070,7 @@ SubClassOf( ObjectSomeValuesFrom( (potassium voltage-gated channel subfamily A member 10 (mouse)) -AnnotationAssertion(Annotation( "OMA:B2RQA1") Annotation( "PANTHER:PTHR11537:SF44") Annotation( "PRO:DNx") "A voltage-gated potassium channel subunit KCNA10 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:B2RQA1") Annotation( "PRO:DNx") "A voltage-gated potassium channel subunit KCNA10 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:B2RQA1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mKCNA10") AnnotationAssertion(Annotation( "UniProtKB:B2RQA1") "voltage-gated potassium channel subunit Kv1.8 (mouse)") @@ -151567,7 +152104,7 @@ SubClassOf( ObjectSomeValuesFrom( (guanine nucleotide-binding protein G(i) subunit alpha-1 (mouse)) -AnnotationAssertion(Annotation( "OMA:B2RSH2") Annotation( "PANTHER:PTHR10218:SF128") Annotation( "PRO:DNx") "A guanine nucleotide-binding protein G(i) subunit alpha-1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:B2RSH2") Annotation( "PRO:DNx") "A guanine nucleotide-binding protein G(i) subunit alpha-1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:B2RSH2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mGNAI1") AnnotationAssertion( "protein") @@ -151602,7 +152139,7 @@ SubClassOf( ObjectSomeValuesFrom( (OTU domain-containing protein 7B (mouse)) -AnnotationAssertion(Annotation( "OMA:B2RUR8") Annotation( "PANTHER:PTHR13367:SF6") Annotation( "PRO:DNx") "An OTU domain-containing protein 7B that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:B2RUR8") Annotation( "PRO:DNx") "An OTU domain-containing protein 7B that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:B2RUR8") AnnotationAssertion(Annotation( "UniProtKB:B2RUR8") "cellular zinc finger anti-NF-kappa-B protein (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mOTUD7B") @@ -151882,7 +152419,7 @@ SubClassOf( ObjectSomeValuesFrom( (ribonuclease T2-A (mouse)) -AnnotationAssertion(Annotation( "OMA:C0HKG5") Annotation( "PRO:DNx") "A ribonuclease T2 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A ribonuclease T2 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:C0HKG5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRNASET2") AnnotationAssertion(Annotation( "UniProtKB:C0HKG5") "ribonuclease 6-A (mouse)") @@ -151913,17 +152450,19 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (protein Frey (human)) +# Class: (protein Frey 1 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:C9JXX5") "A protein Frey that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:C9JXX5") "A protein Frey 1 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:C9JXX5") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hC11orf94") +AnnotationAssertion(Annotation( "UniProtKB:C9JXX5") "Frey regulator of sperm-oocyte fusion 1 (human)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hFREY1") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:C9JXX5") Annotation( ) "C11orf94") AnnotationAssertion(Annotation( "UniProtKB:C9JXX5") Annotation( ) "FREY") +AnnotationAssertion(Annotation( "UniProtKB:C9JXX5") Annotation( ) "FREY1") AnnotationAssertion( "PR:C9JXX5") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "protein Frey (human)") +AnnotationAssertion(rdfs:label "protein Frey 1 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -151991,6 +152530,22 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (protein FAM151B (mouse)) + +AnnotationAssertion(Annotation( "OMA:D3YUE4") Annotation( "PRO:DNx") "A protein FAM151B that is encoded in the genome of mouse.") +AnnotationAssertion( "UniProtKB:D3YUE4") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mFAM151B") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:D3YUE4") Annotation( ) "Fam151b") +AnnotationAssertion( "PR:D3YUE4") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "protein FAM151B (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (solute carrier family 35 member G2 (mouse)) AnnotationAssertion(Annotation( "OMA:D3YVE8") Annotation( "PRO:DNx") "A solute carrier family 35 member G2 that is encoded in the genome of mouse.") @@ -152075,6 +152630,26 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (transforming growth factor-beta receptor type 3-like protein (mouse)) + +AnnotationAssertion(Annotation( "OMA:D3YZZ2") Annotation( "PRO:DNx") "A transforming growth factor-beta receptor type 3-like protein that is encoded in the genome of mouse.") +AnnotationAssertion( "UniProtKB:D3YZZ2") +AnnotationAssertion(Annotation( "UniProtKB:D3YZZ2") "TGF-beta receptor type-3-like protein (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:D3YZZ2") "TGFR-3L (mouse)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mTGFBR3L") +AnnotationAssertion(Annotation( "UniProtKB:D3YZZ2") "transforming growth factor, beta receptor III-like (mouse)") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:D3YZZ2") Annotation( ) "Gm14378") +AnnotationAssertion(Annotation( "UniProtKB:D3YZZ2") Annotation( ) "Tgfbr3l") +AnnotationAssertion( "PR:D3YZZ2") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "transforming growth factor-beta receptor type 3-like protein (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (melanocortin-2 receptor accessory protein 2 (mouse)) AnnotationAssertion(Annotation( "OMA:D3Z1Q2") Annotation( "PRO:DNx") "A melanocortin-2 receptor accessory protein 2 that is encoded in the genome of mouse.") @@ -152093,7 +152668,7 @@ SubClassOf( ObjectSomeValuesFrom( (E3 ubiquitin-protein ligase CCNB1IP1 (mouse)) -AnnotationAssertion(Annotation( "OMA:D3Z3K2") Annotation( "PANTHER:PTHR14305:SF0") Annotation( "PRO:DNx") "An E3 ubiquitin-protein ligase CCNB1IP1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:D3Z3K2") Annotation( "PRO:DNx") "An E3 ubiquitin-protein ligase CCNB1IP1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:D3Z3K2") AnnotationAssertion(Annotation( "UniProtKB:D3Z3K2") "RING-type E3 ubiquitin transferase CCNB1IP1 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:D3Z3K2") "cyclin-B1-interacting protein 1 (mouse)") @@ -152114,7 +152689,7 @@ SubClassOf( ObjectSomeValuesFrom( (RNA-binding protein 24 (mouse)) -AnnotationAssertion(Annotation( "OMA:D3Z4I3") Annotation( "PANTHER:PTHR24011:SF25") Annotation( "PRO:DNx") "An RNA-binding protein 24 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:D3Z4I3") Annotation( "PRO:DNx") "An RNA-binding protein 24 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:D3Z4I3") AnnotationAssertion(Annotation( "UniProtKB:D3Z4I3") "RNA-binding motif protein 24 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRBM24") @@ -152163,7 +152738,7 @@ SubClassOf( ObjectSomeValuesFrom( (cartilage intermediate layer protein 2 (mouse)) -AnnotationAssertion(Annotation( "OMA:D3Z7H8") Annotation( "PANTHER:PTHR15031:SF0") Annotation( "PRO:DNx") "A cartilage intermediate layer protein 2 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:D3Z7H8") Annotation( "PRO:DNx") "A cartilage intermediate layer protein 2 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:D3Z7H8") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCILP2") AnnotationAssertion( "protein") @@ -152196,17 +152771,18 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (WSC domain-containing protein 2 (mouse)) +# Class: (sialate:O-sulfotransferase 2 (mouse)) -AnnotationAssertion(Annotation( "OMA:D4PHA7") Annotation( "PRO:DNx") "A WSC domain-containing protein 2 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:D4PHA7") Annotation( "PRO:DNx") "A sialate:O-sulfotransferase 2 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:D4PHA7") +AnnotationAssertion(Annotation( "UniProtKB:D4PHA7") "WSC domain-containing protein 2 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mWSCD2") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:D4PHA7") Annotation( ) "Kiaa0789") AnnotationAssertion(Annotation( "UniProtKB:D4PHA7") Annotation( ) "Wscd2") AnnotationAssertion( "PR:D4PHA7") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "WSC domain-containing protein 2 (mouse)") +AnnotationAssertion(rdfs:label "sialate:O-sulfotransferase 2 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -152578,7 +153154,7 @@ SubClassOf( ObjectSomeValuesFrom( (retinaldehyde-binding protein 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:E1C1U1") Annotation( "PANTHER:PTHR10174:SF20") Annotation( "PRO:DNx") "A retinaldehyde-binding protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A retinaldehyde-binding protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:E1C1U1") AnnotationAssertion(Annotation( "UniProtKB:E1C1U1") "cellular retinaldehyde-binding protein (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RLBP1") @@ -152763,7 +153339,9 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (uncharacterized protein, OXT translation product (chicken)) @@ -152823,6 +153401,7 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (uncharacterized protein, MSRB1 translation product (chicken)) @@ -152855,7 +153434,7 @@ SubClassOf( ObjectSomeValuesFrom( (cell adhesion molecule DSCAML1 (chicken)) -AnnotationAssertion(Annotation( "OMA:E1C8P7") Annotation( "PRO:DNx") "A cell adhesion molecule DSCAML1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A cell adhesion molecule DSCAML1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:E1C8P7") AnnotationAssertion(Annotation( "UniProtKB:E1C8P7") "Down syndrome cell adhesion molecule-like protein 1 homolog (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-DSCAML1") @@ -152868,6 +153447,7 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (polyadenylate-binding protein 4 (chicken)) @@ -153002,7 +153582,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein turtle homolog B (mouse)) -AnnotationAssertion(Annotation( "OMA:E9PZ19") Annotation( "PANTHER:PTHR10489:SF2") Annotation( "PRO:DNx") "A protein turtle homolog B that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:E9PZ19") Annotation( "PRO:DNx") "A protein turtle homolog B that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:E9PZ19") AnnotationAssertion(Annotation( "UniProtKB:E9PZ19") "immunoglobulin superfamily member 9B (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mIGSF9B") @@ -153039,7 +153619,7 @@ SubClassOf( ObjectSomeValuesFrom( (adhesion G-protein coupled receptor F2 (mouse)) -AnnotationAssertion(Annotation( "OMA:E9Q4J9") Annotation( "PRO:DNx") "An adhesion G-protein coupled receptor F2 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:E9Q4J9") Annotation( "PRO:DNx") "A putative adhesion G protein-coupled receptor F2P that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:E9Q4J9") AnnotationAssertion(Annotation( "UniProtKB:E9Q4J9") "G-protein coupled receptor 111 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:E9Q4J9") "G-protein coupled receptor PGR20 (mouse)") @@ -153097,7 +153677,7 @@ SubClassOf( ObjectSomeValuesFrom( (Fanconi anemia group F protein (mouse)) -AnnotationAssertion(Annotation( "OMA:E9Q5Z5") Annotation( "PANTHER:PTHR14449:SF0") Annotation( "PRO:DNx") "A Fanconi anemia group F protein that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:E9Q5Z5") Annotation( "PRO:DNx") "A Fanconi anemia group F protein that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:E9Q5Z5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mFANCF") AnnotationAssertion(Annotation( "UniProtKB:E9Q5Z5") "protein FACF (mouse)") @@ -153198,7 +153778,7 @@ SubClassOf( ObjectSomeValuesFrom( (carcinoembryonic antigen-related cell adhesion molecule 16 (mouse)) -AnnotationAssertion(Annotation( "OMA:E9QA28") Annotation( "PANTHER:PTHR19955:SF46") Annotation( "PRO:DNx") "A carcinoembryonic antigen-related cell adhesion molecule 16 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:E9QA28") Annotation( "PRO:DNx") "A carcinoembryonic antigen-related cell adhesion molecule 16 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:E9QA28") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCEACAM16") AnnotationAssertion( "protein") @@ -153226,7 +153806,9 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (serine/threonine-protein kinase 10 (chicken)) @@ -153242,6 +153824,7 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (uncharacterized protein, HERC4 translation product (chicken)) @@ -153289,7 +153872,7 @@ SubClassOf( ObjectSomeValuesFrom( (inosine triphosphate pyrophosphatase (chicken)) -AnnotationAssertion(Annotation( "OMA:F1NLH9") Annotation( "PANTHER:PTHR11067:SF7") Annotation( "PRO:DNx") "An inosine triphosphate pyrophosphatase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:F1NLH9") Annotation( "PRO:DNx") "An inosine triphosphate pyrophosphatase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:F1NLH9") AnnotationAssertion(Annotation( "UniProtKB:F1NLH9") "ITPase (chicken)") AnnotationAssertion(Annotation( "UniProtKB:F1NLH9") "NTPase (chicken)") @@ -153327,7 +153910,7 @@ SubClassOf( ObjectSomeValuesFrom( (multiple inositol polyphosphate phosphatase 1 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A multiple inositol polyphosphate phosphatase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:F1NPQ2") Annotation( "PRO:DNx") "A multiple inositol polyphosphate phosphatase 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:F1NPQ2") AnnotationAssertion(Annotation( "UniProtKB:F1NPQ2") "2,3-BPG phosphatase (chicken)") AnnotationAssertion(Annotation( "UniProtKB:F1NPQ2") "2,3-bisphosphoglycerate 3-phosphatase (chicken)") @@ -153348,7 +153931,7 @@ SubClassOf( ObjectSomeValuesFrom( (mismatch repair endonuclease PMS2 (chicken)) -AnnotationAssertion(Annotation( "OMA:F1NQJ3") Annotation( "PRO:DNx") "A mismatch repair endonuclease PMS2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A mismatch repair endonuclease PMS2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:F1NQJ3") AnnotationAssertion(Annotation( "UniProtKB:F1NQJ3") "DNA mismatch repair protein PMS2 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:F1NQJ3") "PMS1 protein homolog 2 (chicken)") @@ -153362,7 +153945,9 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ovocleidin-116 (chicken)) @@ -153383,7 +153968,7 @@ SubClassOf( ObjectSomeValuesFrom( (caspase-7 (chicken)) -AnnotationAssertion(Annotation( "OMA:F1NV61") Annotation( "PRO:DNx") "A caspase-7 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:CNA") "A caspase-7 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:F1NV61") AnnotationAssertion(Annotation( "UniProtKB:F1NV61") "CASP-7 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CASP7") @@ -153484,7 +154069,7 @@ SubClassOf( ObjectSomeValuesFrom( (YjeF N-terminal domain-containing protein 3 (mouse)) -AnnotationAssertion(Annotation( "OMA:F6W8I0") Annotation( "PANTHER:PTHR13232:SF4") Annotation( "PRO:DNx") "A YjeF N-terminal domain-containing protein 3 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:F6W8I0") Annotation( "PRO:DNx") "A YjeF N-terminal domain-containing protein 3 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:F6W8I0") AnnotationAssertion(Annotation( "UniProtKB:F6W8I0") "ApoA-I-binding protein 2 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:F6W8I0") "YjeF_N3 (mouse)") @@ -153595,7 +154180,7 @@ SubClassOf( ObjectSomeValuesFrom( (arfaptin-1 (mouse)) -AnnotationAssertion(Annotation( "OMA:G5E8V9") Annotation( "PANTHER:PTHR12141:SF1") Annotation( "PRO:DNx") "An arfaptin-1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:G5E8V9") Annotation( "PRO:DNx") "An arfaptin-1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:G5E8V9") AnnotationAssertion(Annotation( "UniProtKB:G5E8V9") "ADP-ribosylation factor-interacting protein 1 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mARFIP1") @@ -153617,6 +154202,7 @@ AnnotationAssertion( "PRO:DNx") Annotation( ) "mC19orf84") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:H3BKT1") Annotation( ) "Gm38999") +AnnotationAssertion(Annotation( "UniProtKB:H3BKT1") Annotation( ) "Gm52993") AnnotationAssertion( "PR:H3BKT1") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "uncharacterized protein C19orf84 homolog (mouse)") @@ -153689,6 +154275,23 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (actin maturation protease (mouse)) + +AnnotationAssertion(Annotation( "OMA:J3QPC3") Annotation( "PRO:DNx") "An actin maturation protease that is encoded in the genome of mouse.") +AnnotationAssertion( "UniProtKB:J3QPC3") +AnnotationAssertion(Annotation( "UniProtKB:J3QPC3") "actin aminopeptidase ACTMAP (mouse)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mACTMAP") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:J3QPC3") Annotation( ) "Actmap") +AnnotationAssertion( "PR:J3QPC3") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "actin maturation protease (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (thrombospondin-type laminin G domain and EAR repeat-containing protein (mouse)) AnnotationAssertion(Annotation( "OMA:J3S6Y1") Annotation( "PRO:DNx") "A protein TSPEAR that is encoded in the genome of mouse.") @@ -155697,27 +156300,6 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (regenerating islet-derived protein 3-gamma (mouse)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A regenerating islet-derived protein 3-gamma that is encoded in the genome of mouse.") -AnnotationAssertion( "UniProtKB:O09049") -AnnotationAssertion(Annotation( "UniProtKB:O09049") "REG-3-gamma (mouse)") -AnnotationAssertion(Annotation( "UniProtKB:O09049") "Reg III-gamma (mouse)") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mREG3G") -AnnotationAssertion(Annotation( "UniProtKB:O09049") "pancreatitis-associated protein 3 (mouse)") -AnnotationAssertion(Annotation( "UniProtKB:O09049") "regenerating islet-derived protein III-gamma (mouse)") -AnnotationAssertion( "protein") -AnnotationAssertion(Annotation( "UniProtKB:O09049") Annotation( ) "Pap3") -AnnotationAssertion(Annotation( "UniProtKB:O09049") Annotation( ) "Reg3g") -AnnotationAssertion( "PR:O09049") -AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "regenerating islet-derived protein 3-gamma (mouse)") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (guanylate cyclase activator 2B (mouse)) AnnotationAssertion(Annotation( "OMA:O09051") Annotation( "PRO:DNx") "A guanylate cyclase activator 2B that is encoded in the genome of mouse.") @@ -156022,7 +156604,7 @@ SubClassOf( ObjectSomeValuesFrom( (target of Myb1 membrane trafficking protein (chicken)) -AnnotationAssertion(Annotation( "OMA:O12940") Annotation( "PANTHER:PTHR13856:SF32") Annotation( "PRO:DNx") "A target of Myb1 membrane trafficking protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O12940") Annotation( "PRO:DNx") "A target of Myb1 membrane trafficking protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O12940") AnnotationAssertion(Annotation( "UniProtKB:O12940") "Tom-1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TOM1") @@ -156074,7 +156656,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein kinase C and casein kinase substrate in neurons protein 2 (chicken)) -AnnotationAssertion(Annotation( "OMA:O13154") Annotation( "PANTHER:PTHR10959:SF2") Annotation( "PRO:DNx") "A protein kinase C and casein kinase substrate in neurons protein 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O13154") Annotation( "PRO:DNx") "A protein kinase C and casein kinase substrate in neurons protein 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O13154") AnnotationAssertion(Annotation( "UniProtKB:O13154") "FAP52 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PACSIN2") @@ -156092,7 +156674,7 @@ SubClassOf( ObjectSomeValuesFrom( (proteasome subunit alpha type-7 (chicken)) -AnnotationAssertion(Annotation( "OMA:O13268") Annotation( "PANTHER:PTHR11599:SF15") Annotation( "PRO:DNx") "A proteasome subunit alpha type-7 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O13268") Annotation( "PRO:DNx") "A proteasome subunit alpha type-7 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O13268") AnnotationAssertion(Annotation( "UniProtKB:O13268") "GPRO-28 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PSMA7") @@ -156385,6 +156967,7 @@ AnnotationAssertion(Annotation( "UniProtKB:O14602") "eukaryotic translation initiation factor 4C (human)") AnnotationAssertion( "UniProtKB:O14602") AnnotationAssertion(Annotation( "UniProtKB:O14602") "eIF-1A Y isoform (human)") +AnnotationAssertion(Annotation( "UniProtKB:O14602") "eIF1A Y isoform (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hEIF1AY") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:O14602") Annotation( ) "EIF1AY") @@ -156659,7 +157242,7 @@ AnnotationAssertion( "UniProtKB:O14745") "EBP50 (human)") AnnotationAssertion(Annotation( "UniProtKB:O14745") "NHERF-1 (human)") AnnotationAssertion(Annotation( "UniProtKB:O14745") "ezrin-radixin-moesin-binding phosphoprotein 50 (human)") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSLC9A3R1") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNHERF1") AnnotationAssertion(Annotation( "UniProtKB:O14745") "regulatory cofactor of Na(+)/H(+) exchanger (human)") AnnotationAssertion(Annotation( "UniProtKB:O14745") "sodium-hydrogen exchanger regulatory factor 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:O14745") "solute carrier family 9 isoform A3 regulatory factor 1 (human)") @@ -157009,6 +157592,8 @@ SubClassOf( ObjectSomeValuesFrom( (transcription regulator protein BACH1 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:O14867") "A transcription regulator protein BACH1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:O14867 located_in GO:0005654") "Reactome:R-HSA-9707688") +AnnotationAssertion(Annotation(rdfs:label "PR:O14867 located_in GO:0005829") "Reactome:R-HSA-9708429") AnnotationAssertion( "UniProtKB:O14867") AnnotationAssertion(Annotation( "UniProtKB:O14867") "BTB and CNC homolog 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:O14867") "HA2303 (human)") @@ -157093,6 +157678,7 @@ SubClassOf( ObjectSomeValuesFrom( (PDZ domain-containing protein GIPC1 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:O14908") "A PDZ domain-containing protein GIPC1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:O14908 located_in GO:0005737") "Reactome:R-HSA-9839329") AnnotationAssertion( "UniProtKB:O14908") AnnotationAssertion(Annotation( "UniProtKB:O14908") "GAIP C-terminus-interacting protein (human)") AnnotationAssertion(Annotation( "UniProtKB:O14908") "RGS-GAIP-interacting protein (human)") @@ -157168,6 +157754,7 @@ AnnotationAssertion(Annotation(rdfs:label "PR:O14920 located_in GO:0005829") "UniProtKB:O14920") AnnotationAssertion(Annotation( "UniProtKB:O14920") "I-kappa-B kinase 2 (human)") AnnotationAssertion(Annotation( "UniProtKB:O14920") "I-kappa-B-kinase beta (human)") +AnnotationAssertion(Annotation( "UniProtKB:O14920") "IKK-2 (human)") AnnotationAssertion(Annotation( "UniProtKB:O14920") "IKK-B (human)") AnnotationAssertion(Annotation( "UniProtKB:O14920") "IKK-beta (human)") AnnotationAssertion(Annotation( "UniProtKB:O14920") "IKK2 (human)") @@ -157757,6 +158344,8 @@ SubClassOf( ObjectSomeValuesFrom( (membrane-associated progesterone receptor component 2 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:O15173") "A membrane-associated progesterone receptor component 2 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:O15173 located_in GO:0005789") "Reactome:R-HSA-9714349") +AnnotationAssertion(Annotation(rdfs:label "PR:O15173 located_in GO:0010008") "Reactome:R-HSA-9715090") AnnotationAssertion( "UniProtKB:O15173") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPGRMC2") AnnotationAssertion(Annotation( "UniProtKB:O15173") "progesterone membrane-binding protein (human)") @@ -158868,6 +159457,23 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (pro-neuregulin-3, membrane-bound isoform (mouse)) + +AnnotationAssertion(Annotation( "OMA:O35181") Annotation( "PRO:DNx") "A pro-neuregulin-3, membrane-bound isoform that is encoded in the genome of mouse.") +AnnotationAssertion( "UniProtKB:O35181") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mNRG3") +AnnotationAssertion(Annotation( "UniProtKB:O35181") "pro-NRG3 (mouse)") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:O35181") Annotation( ) "Nrg3") +AnnotationAssertion( "PR:O35181") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "pro-neuregulin-3, membrane-bound isoform (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (granzyme K (mouse)) AnnotationAssertion(Annotation( "OMA:O35205") Annotation( "PRO:DNx") "A granzyme K that is encoded in the genome of mouse.") @@ -159414,6 +160020,26 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (X-box-binding protein 1 (mouse)) + +AnnotationAssertion(Annotation( "OMA:O35426") Annotation( "PRO:DNx") "An X-box-binding protein 1 that is encoded in the genome of mouse.") +AnnotationAssertion( "UniProtKB:O35426") +AnnotationAssertion(Annotation( "UniProtKB:O35426") "TREB-5 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:O35426") "Tax-responsive element-binding protein 5 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:O35426") "XBP-1 (mouse)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mXBP1") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:O35426") Annotation( ) "Treb5") +AnnotationAssertion(Annotation( "UniProtKB:O35426") Annotation( ) "Xbp1") +AnnotationAssertion( "PR:O35426") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "X-box-binding protein 1 (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (DNA-directed RNA polymerase III subunit RPC9 (mouse)) AnnotationAssertion(Annotation( "OMA:O35427") Annotation( "PRO:DNx") "A DNA-directed RNA polymerase III subunit RPC9 that is encoded in the genome of mouse.") @@ -160226,7 +160852,7 @@ SubClassOf( ObjectSomeValuesFrom( (nuclear receptor subfamily 5 group A member 2 (chicken)) -AnnotationAssertion(Annotation( "OMA:O42101") Annotation( "PANTHER:PTHR24086:SF205") Annotation( "PRO:DNx") "A nuclear receptor subfamily 5 group A member 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O42101") Annotation( "PRO:DNx") "A nuclear receptor subfamily 5 group A member 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O42101") AnnotationAssertion(Annotation( "UniProtKB:O42101") "FTF/LRH-1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:O42101") "OR2.0 (chicken)") @@ -160244,7 +160870,7 @@ SubClassOf( ObjectSomeValuesFrom( (ornithine decarboxylase antizyme 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:O42148") Annotation( "PANTHER:PTHR10279:SF2") Annotation( "PRO:DNx") "An ornithine decarboxylase antizyme that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O42148") Annotation( "PRO:DNx") "An ornithine decarboxylase antizyme that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O42148") AnnotationAssertion(Annotation( "UniProtKB:O42148") "ODC-Az (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-OAZ1") @@ -160261,7 +160887,7 @@ SubClassOf( ObjectSomeValuesFrom( (cochlin (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR22992:SF10") Annotation( "PRO:DNx") "A cochlin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A cochlin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O42163") AnnotationAssertion(Annotation( "UniProtKB:O42163") "COCH-5B2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-COCH") @@ -160279,7 +160905,7 @@ SubClassOf( ObjectSomeValuesFrom( (keratocan (chicken)) -AnnotationAssertion(Annotation( "OMA:O42235") Annotation( "PANTHER:PTHR24371:SF113") Annotation( "PRO:DNx") "A keratocan that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O42235") Annotation( "PRO:DNx") "A keratocan that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O42235") AnnotationAssertion(Annotation( "UniProtKB:O42235") "KTN (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-KERA") @@ -160316,7 +160942,7 @@ SubClassOf( ObjectSomeValuesFrom( (LIM domain-binding protein 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:O42252") Annotation( "PANTHER:PTHR10378:SF7") Annotation( "PRO:DNx") "A LIM domain-binding protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O42252") Annotation( "PRO:DNx") "A LIM domain-binding protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O42252") AnnotationAssertion(Annotation( "UniProtKB:O42252") "CLIM-2 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:O42252") "LDB-1 (chicken)") @@ -160341,7 +160967,7 @@ SubClassOf( ObjectSomeValuesFrom( (proteasome subunit alpha type-1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11599:SF12") Annotation( "PRO:DNx") "A proteasome subunit alpha type-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A proteasome subunit alpha type-1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O42265") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PSMA1") AnnotationAssertion(Annotation( "UniProtKB:O42265") "macropain subunit C2 (chicken)") @@ -160360,7 +160986,7 @@ SubClassOf( ObjectSomeValuesFrom( (vitamin D3 receptor (chicken)) -AnnotationAssertion(Annotation( "OMA:O42392") Annotation( "PANTHER:PTHR24082:SF166") Annotation( "PRO:DNx") "A vitamin D3 receptor that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O42392") Annotation( "PRO:DNx") "A vitamin D3 receptor that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O42392") AnnotationAssertion(Annotation( "UniProtKB:O42392") "1,25-dihydroxyvitamin D3 receptor (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-VDR") @@ -160379,7 +161005,7 @@ SubClassOf( ObjectSomeValuesFrom( (matrix Gla protein (chicken)) -AnnotationAssertion(Annotation( "OMA:O42413") Annotation( "PANTHER:PTHR10109:SF0") Annotation( "PRO:DNx") "A matrix Gla protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O42413") Annotation( "PRO:DNx") "A matrix Gla protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O42413") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MGP") AnnotationAssertion( "protein") @@ -160395,7 +161021,7 @@ SubClassOf( ObjectSomeValuesFrom( (neurofascin (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10489:SF41") Annotation( "PRO:DNx") "A neurofascin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A neurofascin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O42414") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-NFASC") AnnotationAssertion( "protein") @@ -160411,7 +161037,7 @@ SubClassOf( ObjectSomeValuesFrom( (ephrin type-A receptor 7 (chicken)) -AnnotationAssertion(Annotation( "OMA:O42422") Annotation( "PANTHER:PTHR24416:SF341") Annotation( "PRO:DNx") "An ephrin type-A receptor 7 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O42422") Annotation( "PRO:DNx") "An ephrin type-A receptor 7 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O42422") AnnotationAssertion(Annotation( "UniProtKB:O42422") "EK11 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:O42422") "EPH-like kinase 11 (chicken)") @@ -160929,19 +161555,20 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (acidic leucine-rich nuclear phosphoprotein 32 family member C (human)) +# Class: (putative uncharacterized protein ANP32CP (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:O43423") "An acidic leucine-rich nuclear phosphoprotein 32 family member C that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:O43423") "A putative uncharacterized protein ANP32CP that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:O43423") +AnnotationAssertion(Annotation( "UniProtKB:O43423") "acidic leucine-rich nuclear phosphoprotein 32 family member C (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hANP32C") AnnotationAssertion(Annotation( "UniProtKB:O43423") "phosphoprotein 32-related protein 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:O43423") "tumorigenic protein pp32r1 (human)") AnnotationAssertion( "protein") -AnnotationAssertion(Annotation( "UniProtKB:O43423") Annotation( ) "ANP32C") +AnnotationAssertion(Annotation( "UniProtKB:O43423") Annotation( ) "ANP32CP") AnnotationAssertion(Annotation( "UniProtKB:O43423") Annotation( ) "PP32R1") AnnotationAssertion( "PR:O43423") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "acidic leucine-rich nuclear phosphoprotein 32 family member C (human)") +AnnotationAssertion(rdfs:label "putative uncharacterized protein ANP32CP (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -161190,7 +161817,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:O43561") "A linker for activation of T-cells family member 1 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:O43561 located_in GO:0005886") "Reactome:R-HSA-202322") AnnotationAssertion( "UniProtKB:O43561") -AnnotationAssertion(Annotation( "UniProtKB:O43561") "36 kDa phospho-tyrosine adapter protein (human)") +AnnotationAssertion(Annotation( "UniProtKB:O43561") "36 kDa phosphotyrosine adapter protein (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hLAT") AnnotationAssertion(Annotation( "UniProtKB:O43561") "p36-38 (human)") AnnotationAssertion(Annotation( "UniProtKB:O43561") "pp36 (human)") @@ -161318,10 +161945,11 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (2'-deoxynucleoside 5'-phosphate N-hydrolase 1 (human)) +# Class: (5-hydroxymethyl-dUMP N-hydrolase (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:O43598") "A 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:O43598") "A 5-hydroxymethyl-dUMP N-hydrolase that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:O43598") +AnnotationAssertion(Annotation( "UniProtKB:O43598") "2'-deoxynucleoside 5'-phosphate N-hydrolase 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:O43598") "c-Myc-responsive protein RCL (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hDNPH1") AnnotationAssertion( "protein") @@ -161330,7 +161958,7 @@ AnnotationAssertion(Annotation( "UniProtKB:O43598") Annotation( ) "RCL") AnnotationAssertion( "PR:O43598") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "2'-deoxynucleoside 5'-phosphate N-hydrolase 1 (human)") +AnnotationAssertion(rdfs:label "5-hydroxymethyl-dUMP N-hydrolase (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -162160,7 +162788,7 @@ SubClassOf( ObjectSomeValuesFrom( (natural killer cells antigen CD94 (mouse)) -AnnotationAssertion(Annotation( "OMA:O54707") Annotation( "PANTHER:PTHR22800:SF15") Annotation( "PRO:DNx") "A killer cell lectin-like receptor subfamily D member 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:O54707") Annotation( "PRO:DNx") "A killer cell lectin-like receptor subfamily D member 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:O54707") AnnotationAssertion(Annotation( "UniProtKB:O54707") "CD94 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:O54707") "killer cell lectin-like receptor subfamily D member 1 (mouse)") @@ -162691,7 +163319,7 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:O54957") Annotation( "PRO:DNx") "A linker for activation of T-cells family member 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:O54957") -AnnotationAssertion(Annotation( "UniProtKB:O54957") "36 kDa phospho-tyrosine adapter protein (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:O54957") "36 kDa phosphotyrosine adapter protein (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mLAT") AnnotationAssertion(Annotation( "UniProtKB:O54957") "p36-38 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:O54957") "pp36 (mouse)") @@ -163307,7 +163935,7 @@ SubClassOf( ObjectSomeValuesFrom( (frizzled-1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11309:SF33") Annotation( "PRO:DNx") "A frizzled-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O57328") Annotation( "PRO:DNx") "A frizzled-1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O57328") AnnotationAssertion(Annotation( "UniProtKB:O57328") "Fz-1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:O57328") "cFz-1 (chicken)") @@ -163326,7 +163954,7 @@ SubClassOf( ObjectSomeValuesFrom( (frizzled-7 (chicken)) -AnnotationAssertion(Annotation( "OMA:O57329") Annotation( "PANTHER:PTHR11309:SF31") Annotation( "PRO:DNx") "A frizzled-7 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O57329") Annotation( "PRO:DNx") "A frizzled-7 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O57329") AnnotationAssertion(Annotation( "UniProtKB:O57329") "Fz-7 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:O57329") "cFz-7 (chicken)") @@ -163345,7 +163973,7 @@ SubClassOf( ObjectSomeValuesFrom( (thyrotropin subunit beta (chicken)) -AnnotationAssertion(Annotation( "OMA:O57340") Annotation( "PANTHER:PTHR11515:SF5") Annotation( "PRO:DNx") "A thyrotropin subunit beta that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O57340") Annotation( "PRO:DNx") "A thyrotropin subunit beta that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O57340") AnnotationAssertion(Annotation( "UniProtKB:O57340") "TSH-B (chicken)") AnnotationAssertion(Annotation( "UniProtKB:O57340") "TSH-beta (chicken)") @@ -164171,11 +164799,12 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Fas apoptotic inhibitory molecule 3 (human)) +# Class: (immunoglobulin mu Fc receptor (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:O60667") "A Fas apoptotic inhibitory molecule 3 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:O60667") "An immunoglobulin mu Fc receptor that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:O60667") -AnnotationAssertion(Annotation( "UniProtKB:O60667") "IgM Fc fragment receptor (human)") +AnnotationAssertion(Annotation( "UniProtKB:O60667") "Fas apoptotic inhibitory molecule 3 (human)") +AnnotationAssertion(Annotation( "UniProtKB:O60667") "IgM FcR (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hFCMR") AnnotationAssertion(Annotation( "UniProtKB:O60667") "regulator of Fas-induced apoptosis Toso (human)") AnnotationAssertion( "protein") @@ -164184,7 +164813,7 @@ AnnotationAssertion(Annotation( "UniProtKB:O60667") Annotation( ) "TOSO") AnnotationAssertion( "PR:O60667") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "Fas apoptotic inhibitory molecule 3 (human)") +AnnotationAssertion(rdfs:label "immunoglobulin mu Fc receptor (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -164195,7 +164824,6 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:O60671") "A cell cycle checkpoint protein RAD1 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:O60671 located_in GO:0005654") "Reactome:R-HSA-176382") AnnotationAssertion( "UniProtKB:O60671") -AnnotationAssertion(Annotation( "UniProtKB:O60671") "DNA repair exonuclease rad1 homolog (human)") AnnotationAssertion(Annotation( "UniProtKB:O60671") "Rad1-like DNA damage checkpoint protein (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRAD1") AnnotationAssertion( "protein") @@ -164266,6 +164894,8 @@ SubClassOf( ObjectSomeValuesFrom( (importin subunit alpha-7 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:O60684") "An importin subunit alpha-7 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:O60684 located_in GO:0005654") "Reactome:R-HSA-9734665") +AnnotationAssertion(Annotation(rdfs:label "PR:O60684 located_in GO:0005829") "Reactome:R-HSA-9734672") AnnotationAssertion( "UniProtKB:O60684") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hKPNA6") AnnotationAssertion(Annotation( "UniProtKB:O60684") "karyopherin subunit alpha-6 (human)") @@ -164408,20 +165038,20 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (28S ribosomal protein S14, mitochondrial (human)) +# Class: (small ribosomal subunit protein uS14m (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:O60783") "A 28S ribosomal protein S14, mitochondrial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:O60783") "A small ribosomal subunit protein uS14m that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:O60783 located_in GO:0005743") "Reactome:R-HSA-5368192") AnnotationAssertion( "UniProtKB:O60783") +AnnotationAssertion(Annotation( "UniProtKB:O60783") "28S ribosomal protein S14, mitochondrial (human)") AnnotationAssertion(Annotation( "UniProtKB:O60783") "MRP-S14 (human)") AnnotationAssertion(Annotation( "UniProtKB:O60783") "S14mt (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRPS14") -AnnotationAssertion(Annotation( "UniProtKB:O60783") "mitochondrial small ribosomal subunit protein uS14m (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:O60783") Annotation( ) "MRPS14") AnnotationAssertion( "PR:O60783") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "28S ribosomal protein S14, mitochondrial (human)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein uS14m (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -165657,7 +166287,7 @@ SubClassOf( ObjectSomeValuesFrom( (fibulin-1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24048:SF229") Annotation( "PRO:DNx") "A fibulin-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A fibulin-1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O73775") AnnotationAssertion(Annotation( "UniProtKB:O73775") "FIBL-1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-FBLN1") @@ -165674,7 +166304,7 @@ SubClassOf( ObjectSomeValuesFrom( (phosphoethanolamine/phosphocholine phosphatase (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR20889:SF0") Annotation( "PRO:DNx") "A phosphoethanolamine/phosphocholine phosphatase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A phosphoethanolamine/phosphocholine phosphatase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O73884") AnnotationAssertion(Annotation( "UniProtKB:O73884") "3X11A (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PHOSPHO1") @@ -165736,7 +166366,7 @@ SubClassOf( ObjectSomeValuesFrom( (pterin-4-alpha-carbinolamine dehydratase (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR12599:SF0") Annotation( "PRO:DNx") "A pterin-4-alpha-carbinolamine dehydratase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O73930") Annotation( "PRO:DNx") "A pterin-4-alpha-carbinolamine dehydratase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O73930") AnnotationAssertion(Annotation( "UniProtKB:O73930") "4-alpha-hydroxy-tetrahydropterin dehydratase (chicken)") AnnotationAssertion(Annotation( "UniProtKB:O73930") "DCoH (chicken)") @@ -166153,6 +166783,7 @@ AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRAB11FIP3") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:O75154") Annotation( ) "ARFO1") +AnnotationAssertion(Annotation( "UniProtKB:O75154") "FIP3 (human)") AnnotationAssertion(Annotation( "UniProtKB:O75154") Annotation( ) "KIAA0665") AnnotationAssertion(Annotation( "UniProtKB:O75154") Annotation( ) "RAB11FIP3") AnnotationAssertion( "PR:O75154") @@ -166576,21 +167207,21 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L33, mitochondrial (human)) +# Class: (large ribosomal subunit protein bL33m (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:O75394") "A 39S ribosomal protein L33, mitochondrial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:O75394") "A large ribosomal subunit protein bL33m that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:O75394 located_in GO:0005743") "Reactome:R-HSA-5368172") AnnotationAssertion( "UniProtKB:O75394") +AnnotationAssertion(Annotation( "UniProtKB:O75394") "39S ribosomal protein L33, mitochondrial (human)") AnnotationAssertion(Annotation( "UniProtKB:O75394") "L33mt (human)") AnnotationAssertion(Annotation( "UniProtKB:O75394") "MRP-L33 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRPL33") -AnnotationAssertion(Annotation( "UniProtKB:O75394") "mitochondrial large ribosomal subunit protein bL33m (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:O75394") Annotation( ) "C2orf1") AnnotationAssertion(Annotation( "UniProtKB:O75394") Annotation( ) "MRPL33") AnnotationAssertion( "PR:O75394") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L33, mitochondrial (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL33m (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -168225,7 +168856,7 @@ SubClassOf( ObjectSomeValuesFrom( (CD83 antigen (mouse)) -AnnotationAssertion(Annotation( "OMA:O88324") Annotation( "PANTHER:PTHR15193:SF0") Annotation( "PRO:DNx") "A CD83 molecule that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:O88324") Annotation( "PRO:DNx") "A CD83 molecule that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:O88324") AnnotationAssertion(Annotation( "UniProtKB:O88324") "CD83 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCD83") @@ -169610,16 +170241,17 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (cAMP-specific 3',5'-cyclic phosphodiesterase 4A (mouse)) +# Class: (3',5'-cyclic-AMP phosphodiesterase 4A (mouse)) -AnnotationAssertion(Annotation( "OMA:O89084") Annotation( "PRO:DNx") "A cAMP-specific 3',5'-cyclic phosphodiesterase 4A that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:O89084") Annotation( "PRO:DNx") "A 3',5'-cyclic-AMP phosphodiesterase 4A that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:O89084") +AnnotationAssertion(Annotation( "UniProtKB:O89084") "cAMP-specific phosphodiesterase 4A (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mPDE4A") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:O89084") Annotation( ) "Pde4a") AnnotationAssertion( "PR:O89084") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "cAMP-specific 3',5'-cyclic phosphodiesterase 4A (mouse)") +AnnotationAssertion(rdfs:label "3',5'-cyclic-AMP phosphodiesterase 4A (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -169776,7 +170408,7 @@ SubClassOf( ObjectSomeValuesFrom( (homeobox protein SIX6 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10390:SF12") Annotation( "PRO:DNx") "A homeobox protein SIX6 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O93307") Annotation( "PRO:DNx") "A homeobox protein SIX6 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O93307") AnnotationAssertion(Annotation( "UniProtKB:O93307") "Six9 protein (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SIX6") @@ -169793,7 +170425,8 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (core histone macro-H2A.1 (chicken)) @@ -169817,7 +170450,7 @@ SubClassOf( ObjectSomeValuesFrom( (retinal dehydrogenase 2 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A retinal dehydrogenase 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O93344") Annotation( "PRO:DNx") "A retinal dehydrogenase 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O93344") AnnotationAssertion(Annotation( "UniProtKB:O93344") "RALDH 2 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:O93344") "RALDH(II) (chicken)") @@ -169859,7 +170492,7 @@ SubClassOf( ObjectSomeValuesFrom( (stathmin-3 (chicken)) -AnnotationAssertion(Annotation( "OMA:O93388") Annotation( "PANTHER:PTHR10104:SF8") Annotation( "PRO:DNx") "A stathmin-3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A stathmin-3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O93388") AnnotationAssertion(Annotation( "UniProtKB:O93388") "SCG10-like protein (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-STMN3") @@ -169879,7 +170512,7 @@ SubClassOf( ObjectSomeValuesFrom( (L-dopachrome tautomerase (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11474:SF4") Annotation( "PRO:DNx") "An L-dopachrome tautomerase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "An L-dopachrome tautomerase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O93505") AnnotationAssertion(Annotation( "UniProtKB:O93505") "DT (chicken)") AnnotationAssertion(Annotation( "UniProtKB:O93505") "L-dopachrome Delta-isomerase (chicken)") @@ -169918,7 +170551,7 @@ SubClassOf( ObjectSomeValuesFrom( (zinc finger and BTB domain-containing protein 7A (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A zinc finger and BTB domain-containing protein 7A that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:O93567") Annotation( "PRO:DNx") "A zinc finger and BTB domain-containing protein 7A that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:O93567") AnnotationAssertion(Annotation( "UniProtKB:O93567") "cLRF (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ZBTB7A") @@ -170024,6 +170657,7 @@ AnnotationAssertion(Annotation( "DTO:03100495") AnnotationAssertion(Annotation(rdfs:label "PR:O94804 located_in GO:0035579") "Reactome:R-HSA-6799617") AnnotationAssertion(Annotation(rdfs:label "PR:O94804 located_in GO:0005886") "Reactome:R-HSA-6806298") +AnnotationAssertion(Annotation(rdfs:label "PR:O94804 located_in GO:0005829") "Reactome:R-HSA-9690312") AnnotationAssertion( "UniProtKB:O94804") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSTK10") AnnotationAssertion(Annotation( "UniProtKB:O94804") "lymphocyte-oriented kinase (human)") @@ -171943,6 +172577,7 @@ SubClassOf( ObjectSomeValuesFrom( (eomesodermin homolog (human)) AnnotationAssertion(Annotation( "PRO:CNA") Annotation( "UniProtKB:O95936") "An eomesodermin that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:O95936 located_in GO:0005654") "Reactome:R-HSA-452232") AnnotationAssertion( "UniProtKB:O95936") AnnotationAssertion(Annotation( "UniProtKB:O95936") "T-box brain protein 2 (human)") AnnotationAssertion(Annotation( "UniProtKB:O95936") "T-brain-2 (human)") @@ -172062,8 +172697,10 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:O95989") "A diphosphoinositol polyphosphate phosphohydrolase 1 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:O95989 located_in GO:0005829") "Reactome:R-HSA-1604654") AnnotationAssertion( "UniProtKB:O95989") +AnnotationAssertion(Annotation( "UniProtKB:O95989") "Ap6A hydrolase (human)") AnnotationAssertion(Annotation( "UniProtKB:O95989") "DIPP-1 (human)") -AnnotationAssertion(Annotation( "UniProtKB:O95989") "diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 1 (human)") +AnnotationAssertion(Annotation( "UniProtKB:O95989") "diadenosine hexaphosphate hydrolase (human)") +AnnotationAssertion(Annotation( "UniProtKB:O95989") "endopolyphosphatase (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNUDT3") AnnotationAssertion(Annotation( "UniProtKB:O95989") "nucleoside diphosphate-linked moiety X motif 3 (human)") AnnotationAssertion(Annotation( "UniProtKB:O95989") "nudix motif 3 (human)") @@ -172071,6 +172708,8 @@ AnnotationAssertion( "UniProtKB:O95989") Annotation( ) "DIPP") AnnotationAssertion(Annotation( "UniProtKB:O95989") Annotation( ) "DIPP1") AnnotationAssertion(Annotation( "UniProtKB:O95989") Annotation( ) "NUDT3") +AnnotationAssertion(Annotation( "UniProtKB:O95989") "m7GpppN-mRNA hydrolase (human)") +AnnotationAssertion(Annotation( "UniProtKB:O95989") "m7GpppX diphosphatase (human)") AnnotationAssertion( "PR:O95989") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "diphosphoinositol polyphosphate phosphohydrolase 1 (human)") @@ -172206,7 +172845,7 @@ SubClassOf( ObjectSomeValuesFrom( (cytochrome b5 (chicken)) -AnnotationAssertion(Annotation( "OMA:P00174") Annotation( "PANTHER:PTHR19359:SF7") Annotation( "PRO:DNx") "A cytochrome b5 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P00174") Annotation( "PRO:DNx") "A cytochrome b5 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P00174") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CYB5A") AnnotationAssertion( "protein") @@ -172627,7 +173266,7 @@ SubClassOf( ObjectSomeValuesFrom( (aspartate aminotransferase, cytoplasmic (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11879:SF0") Annotation( "PRO:DNx") "An aspartate aminotransferase, cytoplasmic that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P00504") Annotation( "PRO:DNx") "An aspartate aminotransferase, cytoplasmic that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P00504") AnnotationAssertion(Annotation( "UniProtKB:P00504") "cAspAT (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P00504") "cCAT (chicken)") @@ -172676,7 +173315,7 @@ SubClassOf( ObjectSomeValuesFrom( (aspartate aminotransferase, mitochondrial (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11879:SF0") Annotation( "PRO:DNx") "An aspartate aminotransferase, mitochondrial that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P00508") Annotation( "PRO:DNx") "An aspartate aminotransferase, mitochondrial that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P00508") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-GOT2") AnnotationAssertion(Annotation( "UniProtKB:P00508") "glutamate oxaloacetate transaminase 2 (chicken)") @@ -172998,7 +173637,7 @@ SubClassOf( ObjectSomeValuesFrom( (transcriptional activator Myb (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10641:SF154") Annotation( "PRO:DNx") "A myb proto-oncogene protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P01103") Annotation( "PRO:DNx") "A myb proto-oncogene protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P01103") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MYB") AnnotationAssertion(Annotation( "UniProtKB:P01103") "proto-oncogene c-Myb (chicken)") @@ -173016,6 +173655,7 @@ SubClassOf( ObjectSomeValuesFrom( (GTPase NRas (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P01111") "A GTPase NRas that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:P01111 located_in GO:0005829") "Reactome:R-HSA-9647758") AnnotationAssertion( "UniProtKB:P01111") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNRAS") AnnotationAssertion(Annotation( "UniProtKB:P01111") "transforming protein N-Ras (human)") @@ -173033,6 +173673,7 @@ SubClassOf( ObjectSomeValuesFrom( (GTPase HRas (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P01112") "A GTPase HRas that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:P01112 located_in GO:0005829") "Reactome:R-HSA-9647765") AnnotationAssertion( "UniProtKB:P01112") AnnotationAssertion(Annotation( "UniProtKB:P01112") "Ha-Ras (human)") AnnotationAssertion(Annotation( "UniProtKB:P01112") "c-H-ras (human)") @@ -173527,20 +174168,20 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (pancreatic prohormone (human)) +# Class: (pancreatic polypeptide prohormone (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P01298") "A pancreatic prohormone that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P01298") "A pancreatic polypeptide prohormone that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P01298") -AnnotationAssertion(Annotation( "UniProtKB:P01298") "PP (human)") +AnnotationAssertion(Annotation( "UniProtKB:P01298") "PH (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPPY") AnnotationAssertion(Annotation( "UniProtKB:P01298") "obinepitide (human)") -AnnotationAssertion(Annotation( "UniProtKB:P01298") "pancreatic polypeptide (human)") +AnnotationAssertion(Annotation( "UniProtKB:P01298") "pancreatic polypeptide Y (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P01298") Annotation( ) "PNP") AnnotationAssertion(Annotation( "UniProtKB:P01298") Annotation( ) "PPY") AnnotationAssertion( "PR:P01298") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "pancreatic prohormone (human)") +AnnotationAssertion(rdfs:label "pancreatic polypeptide prohormone (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -174269,7 +174910,7 @@ SubClassOf( ObjectSomeValuesFrom( (hemoglobin subunit pi (chicken)) -AnnotationAssertion(Annotation( "OMA:P02007") Annotation( "PANTHER:PTHR11442:SF11") Annotation( "PRO:DNx") "A hemoglobin subunit zeta that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P02007") Annotation( "PRO:DNx") "A hemoglobin subunit zeta that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P02007") AnnotationAssertion(Annotation( "UniProtKB:P02007") "Pi-globin (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HBZ") @@ -174611,9 +175252,34 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (myosin regulatory light chain 11 (chicken)) + +AnnotationAssertion(Annotation( "OMA:P02609") Annotation( "PRO:DNx") "A myosin regulatory light chain 11 that is encoded in the genome of chicken.") +AnnotationAssertion( "UniProtKB:P02609") +AnnotationAssertion(Annotation( "UniProtKB:P02609") "LC2f (chicken)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MYL11") +AnnotationAssertion(Annotation( "UniProtKB:P02609") "fast skeletal myosin light chain 2 (chicken)") +AnnotationAssertion(Annotation( "UniProtKB:P02609") "myosin light chain 11 (chicken)") +AnnotationAssertion(Annotation( "UniProtKB:P02609") "myosin regulatory light chain 2, skeletal muscle isoform (chicken)") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:P02609") "DTNB (chicken)") +AnnotationAssertion(Annotation( "UniProtKB:P02609") "G2 (chicken)") +AnnotationAssertion(Annotation( "UniProtKB:P02609") "MLC-2 (chicken)") +AnnotationAssertion(Annotation( "UniProtKB:P02609") Annotation( ) "MYL11") +AnnotationAssertion(Annotation( "UniProtKB:P02609") Annotation( ) "MYLPF") +AnnotationAssertion(Annotation( "UniProtKB:P02609") Annotation( ) "RLC") +AnnotationAssertion( "PR:P02609") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "myosin regulatory light chain 11 (chicken)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (villin-1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11977:SF15") Annotation( "PRO:DNx") "A villin-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A villin-1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P02640") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-VIL1") AnnotationAssertion( "protein") @@ -175762,7 +176428,7 @@ SubClassOf( ObjectSomeValuesFrom( (calbindin (chicken)) -AnnotationAssertion(Annotation( "OMA:P04354") Annotation( "PANTHER:PTHR19972:SF3") Annotation( "PRO:DNx") "A calbindin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P04354") Annotation( "PRO:DNx") "A calbindin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P04354") AnnotationAssertion(Annotation( "UniProtKB:P04354") "D-28K (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P04354") "calbindin D28 (chicken)") @@ -175863,7 +176529,7 @@ SubClassOf( ObjectSomeValuesFrom( (thyroid hormone receptor alpha (chicken)) -AnnotationAssertion(Annotation( "OMA:P04625") Annotation( "PANTHER:PTHR24082:SF215") Annotation( "PRO:DNx") "A thyroid hormone receptor alpha that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P04625") Annotation( "PRO:DNx") "A thyroid hormone receptor alpha that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P04625") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-THRA") AnnotationAssertion(Annotation( "UniProtKB:P04625") "nuclear receptor subfamily 1 group A member 1 (chicken)") @@ -176505,7 +177171,7 @@ SubClassOf( ObjectSomeValuesFrom( (phosphoenolpyruvate carboxykinase, cytosolic [GTP] (chicken)) -AnnotationAssertion(Annotation( "OMA:P05153") Annotation( "PANTHER:PTHR11561:SF0") Annotation( "PRO:DNx") "A phosphoenolpyruvate carboxykinase, cytosolic [GTP] that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P05153") Annotation( "PRO:DNx") "A phosphoenolpyruvate carboxykinase, cytosolic [GTP] that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P05153") AnnotationAssertion(Annotation( "UniProtKB:P05153") "PEPCK-C (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PCK1") @@ -176602,6 +177268,7 @@ AnnotationAssertion(Annotation(rdfs:label "PR:P05198 located_in GO:0005829") "UniProtKB:P05198") AnnotationAssertion(Annotation( "UniProtKB:P05198") "eIF-2-alpha (human)") AnnotationAssertion(Annotation( "UniProtKB:P05198") "eIF-2alpha (human)") +AnnotationAssertion(Annotation( "UniProtKB:P05198") "eIF2-alpha (human)") AnnotationAssertion(Annotation( "UniProtKB:P05198") "eukaryotic translation initiation factor 2 subunit alpha (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hEIF2S1") AnnotationAssertion( "protein") @@ -176735,7 +177402,7 @@ SubClassOf( ObjectSomeValuesFrom( (lysosome-associated membrane glycoprotein 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:P05300") Annotation( "PANTHER:PTHR11506:SF5") Annotation( "PRO:DNx") "A lysosome-associated membrane glycoprotein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:WCB") "A lysosome-associated membrane glycoprotein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P05300") AnnotationAssertion(Annotation( "UniProtKB:P05300") "LAMP-1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-LAMP1") @@ -176769,13 +177436,13 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S acidic ribosomal protein P2 (human)) +# Class: (large ribosomal subunit protein P2 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P05387") "A 60S acidic ribosomal protein P2 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P05387") "A large ribosomal subunit protein P2 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:P05387 located_in GO:0005829") "Reactome:R-HSA-72400") AnnotationAssertion( "UniProtKB:P05387") +AnnotationAssertion(Annotation( "UniProtKB:P05387") "60S acidic ribosomal protein P2 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRPLP2") -AnnotationAssertion(Annotation( "UniProtKB:P05387") "large ribosomal subunit protein P2 (human)") AnnotationAssertion(Annotation( "UniProtKB:P05387") "renal carcinoma antigen NY-REN-44 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P05387") Annotation( ) "D11S2243E") @@ -176783,7 +177450,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P05387") Annotation( ) "RPP2") AnnotationAssertion( "PR:P05387") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "60S acidic ribosomal protein P2 (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein P2 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -176993,7 +177660,7 @@ SubClassOf( ObjectSomeValuesFrom( (RAF proto-oncogene serine/threonine-protein kinase (chicken)) -AnnotationAssertion(Annotation( "OMA:P05625") Annotation( "PANTHER:PTHR23257:SF42") Annotation( "PRO:DNx") "A RAF proto-oncogene serine/threonine-protein kinase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P05625") Annotation( "PRO:DNx") "A RAF proto-oncogene serine/threonine-protein kinase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P05625") AnnotationAssertion(Annotation( "UniProtKB:P05625") "C-MIL (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P05625") "C-RAF (chicken)") @@ -177125,7 +177792,7 @@ SubClassOf( ObjectSomeValuesFrom( (estrogen receptor (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24084:SF217") Annotation( "PRO:DNx") "An estrogen receptor that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P06212") Annotation( "PRO:DNx") "An estrogen receptor that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P06212") AnnotationAssertion(Annotation( "UniProtKB:P06212") "ER (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P06212") "ER-alpha (chicken)") @@ -177479,6 +178146,9 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:CNA") "A DNA polymerase beta that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P06746") +AnnotationAssertion(Annotation( "UniProtKB:P06746") "5'-dRP lyase (human)") +AnnotationAssertion(Annotation( "UniProtKB:P06746") "5'-deoxyribose-phosphate lyase (human)") +AnnotationAssertion(Annotation( "UniProtKB:P06746") "AP lyase (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPOLB") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P06746") Annotation( ) "POLB") @@ -177495,6 +178165,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:P06748") "A nucleophosmin that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:P06748 located_in GO:0005829") "Reactome:R-HSA-3008211") AnnotationAssertion(Annotation(rdfs:label "PR:P06748 located_in GO:0005654") "Reactome:R-HSA-606320") +AnnotationAssertion(Annotation(rdfs:label "PR:P06748 located_in GO:0001652") "Reactome:R-HSA-9017702") AnnotationAssertion( "UniProtKB:P06748") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNPM1") AnnotationAssertion(Annotation( "UniProtKB:P06748") "nucleolar phosphoprotein B23 (human)") @@ -177742,7 +178413,7 @@ SubClassOf( ObjectSomeValuesFrom( (acylphosphatase-2 (chicken)) -AnnotationAssertion(Annotation( "OMA:P07031") Annotation( "PANTHER:PTHR10029:SF1") Annotation( "PRO:DNx") "An acylphosphatase-2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P07031") Annotation( "PRO:DNx") "An acylphosphatase-2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P07031") AnnotationAssertion(Annotation( "UniProtKB:P07031") "acylphosphatase isozyme CH1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P07031") "acylphosphatase, muscle type isozyme (chicken)") @@ -177761,7 +178432,7 @@ SubClassOf( ObjectSomeValuesFrom( (acylphosphatase-1 (chicken)) -AnnotationAssertion(Annotation( "OMA:P07032") Annotation( "PANTHER:PTHR10029:SF2") Annotation( "PRO:DNx") "An acylphosphatase-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P07032") Annotation( "PRO:DNx") "An acylphosphatase-1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P07032") AnnotationAssertion(Annotation( "UniProtKB:P07032") "acylphosphatase isozyme CH2 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P07032") "acylphosphatase, organ-common type isozyme (chicken)") @@ -177780,7 +178451,7 @@ SubClassOf( ObjectSomeValuesFrom( (calretinin (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR19972:SF4") Annotation( "PRO:DNx") "A calretinin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P07090") Annotation( "PRO:DNx") "A calretinin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P07090") AnnotationAssertion(Annotation( "UniProtKB:P07090") "CR (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CALB2") @@ -177837,7 +178508,9 @@ AnnotationAssertion(Annotation( "UniProtKB:P07141") AnnotationAssertion(Annotation( "UniProtKB:P07141") "CSF-1 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P07141") "MCSF (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:P07141") "PG-M-CSF (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCSF1") +AnnotationAssertion(Annotation( "UniProtKB:P07141") "proteoglycan macrophage colony-stimulating factor (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P07141") Annotation( ) "Csf1") AnnotationAssertion(Annotation( "UniProtKB:P07141") Annotation( ) "Csfm") @@ -178246,7 +178919,7 @@ SubClassOf( ObjectSomeValuesFrom( (beta-crystallin B1 (chicken)) -AnnotationAssertion(Annotation( "OMA:P07530") Annotation( "PANTHER:PTHR11818:SF12") Annotation( "PRO:DNx") "A beta-crystallin B1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A beta-crystallin B1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P07530") AnnotationAssertion(Annotation( "UniProtKB:P07530") "beta-35 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P07530") "beta-B1 crystallin (chicken)") @@ -178896,6 +179569,8 @@ AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNGFR") AnnotationAssertion(Annotation( "UniProtKB:P08138") "low affinity neurotrophin receptor p75NTR (human)") AnnotationAssertion(Annotation( "UniProtKB:P08138") "low-affinity nerve growth factor receptor (human)") +AnnotationAssertion(Annotation( "UniProtKB:P08138") "low-affinity nerve growth factor receptor p75NGFR (human)") +AnnotationAssertion(Annotation( "UniProtKB:P08138") "low-affinity nerve growth factor receptor p75NGR (human)") AnnotationAssertion(Annotation( "UniProtKB:P08138") "p75 ICD (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P08138") Annotation( ) "NGFR") @@ -179167,7 +179842,7 @@ SubClassOf( ObjectSomeValuesFrom( (ferritin heavy chain (chicken)) -AnnotationAssertion(Annotation( "OMA:P08267") Annotation( "PANTHER:PTHR11431:SF14") Annotation( "PRO:DNx") "A ferritin heavy chain that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P08267") Annotation( "PRO:DNx") "A ferritin heavy chain that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P08267") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-FTH1") AnnotationAssertion(Annotation( "UniProtKB:P08267") "ferritin H subunit (chicken)") @@ -179202,10 +179877,12 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:P08319") "An all-trans-retinol dehydrogenase [NAD(+)] ADH4 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P08319") +AnnotationAssertion(Annotation( "UniProtKB:P08319") "alcohol dehydrogenase 2 (human)") AnnotationAssertion(Annotation( "UniProtKB:P08319") "alcohol dehydrogenase 4 (human)") AnnotationAssertion(Annotation( "UniProtKB:P08319") "alcohol dehydrogenase class II pi chain (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hADH4") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:P08319") Annotation( ) "ADH2") AnnotationAssertion(Annotation( "UniProtKB:P08319") Annotation( ) "ADH4") AnnotationAssertion( "PR:P08319") AnnotationAssertion(rdfs:comment "Category=organism-gene.") @@ -179622,7 +180299,7 @@ SubClassOf( ObjectSomeValuesFrom( (thioredoxin (chicken)) -AnnotationAssertion(Annotation( "OMA:P08629") Annotation( "PANTHER:PTHR10438:SF18") Annotation( "PRO:DNx") "A thioredoxin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P08629") Annotation( "PRO:DNx") "A thioredoxin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P08629") AnnotationAssertion(Annotation( "UniProtKB:P08629") "Trx (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TXN") @@ -180660,6 +181337,23 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (myosin light chain, embryonic (chicken)) + +AnnotationAssertion(Annotation( "OMA:P09540") Annotation( "PRO:DNx") "A myosin light chain 4 that is encoded in the genome of chicken.") +AnnotationAssertion( "UniProtKB:P09540") +AnnotationAssertion(Annotation( "UniProtKB:P09540") "L23 (chicken)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MYL4") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:P09540") Annotation( ) "MYL4") +AnnotationAssertion( "PR:P09540") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "myosin light chain, embryonic (chicken)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (myosin light chain 4 (mouse)) AnnotationAssertion(Annotation( "OMA:P09541") Annotation( "PRO:DNx") "A myosin light chain 4 that is encoded in the genome of mouse.") @@ -180788,8 +181482,10 @@ AnnotationAssertion( "UniProtKB:P09603") "CSF-1 (human)") AnnotationAssertion(Annotation( "UniProtKB:P09603") "M-CSF (human)") AnnotationAssertion(Annotation( "UniProtKB:P09603") "MCSF (human)") +AnnotationAssertion(Annotation( "UniProtKB:P09603") "PG-M-CSF (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCSF1") AnnotationAssertion(Annotation( "UniProtKB:P09603") "lanimostim (human)") +AnnotationAssertion(Annotation( "UniProtKB:P09603") "proteoglycan macrophage colony-stimulating factor (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P09603") Annotation( ) "CSF1") AnnotationAssertion( "PR:P09603") @@ -180849,6 +181545,7 @@ SubClassOf( ObjectSomeValuesFrom( (heterogeneous nuclear ribonucleoprotein A1 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P09651") "A heterogeneous nuclear ribonucleoprotein A1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:P09651 located_in GO:0005829") "Reactome:R-HSA-9727902") AnnotationAssertion( "UniProtKB:P09651") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hHNRNPA1") AnnotationAssertion(Annotation( "UniProtKB:P09651") "helix-destabilizing protein (human)") @@ -181562,6 +182259,7 @@ SubClassOf( ObjectSomeValuesFrom( (chromosome transmission fidelity protein 8 homolog (human)) AnnotationAssertion(Annotation( "PRO:DAN") "A chromosome transmission fidelity protein 8 homolog that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:P0CG13 located_in GO:0005654") "Reactome:R-HSA-9668898") AnnotationAssertion( "UniProtKB:P0CG13") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCHTF8") AnnotationAssertion( "protein") @@ -181844,7 +182542,7 @@ SubClassOf( ObjectSomeValuesFrom( (sorbitol dehydrogenase (chicken)) -AnnotationAssertion(Annotation( "OMA:P0DMQ6") Annotation( "PRO:DNx") "A sorbitol dehydrogenase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A sorbitol dehydrogenase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P0DMQ6") AnnotationAssertion(Annotation( "UniProtKB:P0DMQ6") "SDH (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SORD") @@ -182215,7 +182913,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein C-ets-2 (chicken)) -AnnotationAssertion(Annotation( "OMA:P10157") Annotation( "PANTHER:PTHR11849:SF47") Annotation( "PRO:DNx") "A protein C-ets-2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P10157") Annotation( "PRO:DNx") "A protein C-ets-2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P10157") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ETS2") AnnotationAssertion( "protein") @@ -182326,7 +183024,7 @@ SubClassOf( ObjectSomeValuesFrom( (cellular tumor antigen p53 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11447:SF6") Annotation( "PRO:DNx") "A cellular tumor antigen p53 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P10360") Annotation( "PRO:DNx") "A cellular tumor antigen p53 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P10360") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TP53") AnnotationAssertion(Annotation( "UniProtKB:P10360") "tumor suppressor p53 (chicken)") @@ -182480,18 +183178,16 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (pancreatic prohormone (mouse)) +# Class: (pancreatic polypeptide prohormone (mouse)) -AnnotationAssertion(Annotation( "OMA:P10601") Annotation( "PRO:DNx") "A pancreatic prohormone that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P10601") Annotation( "PRO:DNx") "A pancreatic polypeptide prohormone that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P10601") -AnnotationAssertion(Annotation( "UniProtKB:P10601") "PP (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mPPY") -AnnotationAssertion(Annotation( "UniProtKB:P10601") "pancreatic polypeptide (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P10601") Annotation( ) "Ppy") AnnotationAssertion( "PR:P10601") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "pancreatic prohormone (mouse)") +AnnotationAssertion(rdfs:label "pancreatic polypeptide prohormone (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -183250,6 +183946,7 @@ AnnotationAssertion( "UniProtKB:P11182") "52 kDa mitochondrial autoantigen of primary biliary cirrhosis (human)") AnnotationAssertion(Annotation( "UniProtKB:P11182") "BCKAD-E2 (human)") AnnotationAssertion(Annotation( "UniProtKB:P11182") "BCKADE2 (human)") +AnnotationAssertion(Annotation( "UniProtKB:P11182") "BCKDH-E2 (human)") AnnotationAssertion(Annotation( "UniProtKB:P11182") "BCOADC-E2 (human)") AnnotationAssertion(Annotation( "UniProtKB:P11182") "branched chain 2-oxo-acid dehydrogenase complex component E2 (human)") AnnotationAssertion(Annotation( "UniProtKB:P11182") "branched-chain alpha-keto acid dehydrogenase complex component E2 (human)") @@ -183259,6 +183956,7 @@ AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hDBT") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P11182") Annotation( ) "BCATE2") +AnnotationAssertion(Annotation( "UniProtKB:P11182") Annotation( ) "BCKDHE2") AnnotationAssertion(Annotation( "UniProtKB:P11182") Annotation( ) "DBT") AnnotationAssertion( "PR:P11182") AnnotationAssertion(rdfs:comment "Category=organism-gene.") @@ -183270,7 +183968,7 @@ SubClassOf( ObjectSomeValuesFrom( (glycine cleavage system H protein, mitochondrial (chicken)) -AnnotationAssertion(Annotation( "OMA:P11183") Annotation( "PANTHER:PTHR11715:SF0") Annotation( "PRO:DNx") "A glycine cleavage system H protein, mitochondrial that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P11183") Annotation( "PRO:DNx") "A glycine cleavage system H protein, mitochondrial that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P11183") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-GCSH") AnnotationAssertion(Annotation( "UniProtKB:P11183") "lipoic acid-containing protein (chicken)") @@ -183742,7 +184440,7 @@ SubClassOf( ObjectSomeValuesFrom( (lipoprotein lipase (chicken)) -AnnotationAssertion(Annotation( "OMA:P11602") Annotation( "PRO:DNx") "A lipoprotein lipase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A lipoprotein lipase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P11602") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-LPL") AnnotationAssertion(Annotation( "UniProtKB:P11602") "phospholipase A1 (chicken)") @@ -183885,7 +184583,7 @@ SubClassOf( ObjectSomeValuesFrom( (fibronectin (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A fibronectin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P11722") Annotation( "PRO:DNx") "A fibronectin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P11722") AnnotationAssertion(Annotation( "UniProtKB:P11722") "FN (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-FN1") @@ -184814,7 +185512,7 @@ SubClassOf( ObjectSomeValuesFrom( (nuclear receptor subfamily 4 group A member 1 (mouse)) -AnnotationAssertion(Annotation( "OMA:P12813") Annotation( "PRO:DNx") "A nuclear receptor subfamily 4 group A member 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P12813") Annotation( "PRO:DNx") "A nuclear receptor subfamily 4 immunity group A member 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P12813") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mNR4A1") AnnotationAssertion(Annotation( "UniProtKB:P12813") "nuclear hormone receptor NUR/77 (mouse)") @@ -184994,7 +185692,7 @@ SubClassOf( ObjectSomeValuesFrom( (caldesmon (chicken)) -AnnotationAssertion(Annotation( "OMA:P12957") Annotation( "PANTHER:PTHR18949:SF0") Annotation( "PRO:DNx") "A caldesmon that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A caldesmon that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P12957") AnnotationAssertion(Annotation( "UniProtKB:P12957") "CDM (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CALD1") @@ -185053,6 +185751,7 @@ SubClassOf( ObjectSomeValuesFrom( (uracil-DNA glycosylase (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P13051") "A uracil-DNA glycosylase that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:P13051 located_in GO:0005654") "Reactome:R-HSA-9817526") AnnotationAssertion( "UniProtKB:P13051") AnnotationAssertion(Annotation( "UniProtKB:P13051") "UDG (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hUNG") @@ -185175,20 +185874,23 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (teratocarcinoma-derived growth factor 1 (human)) +# Class: (protein Cripto (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P13385") "A teratocarcinoma-derived growth factor 1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P13385") "A protein Cripto that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P13385") AnnotationAssertion(Annotation( "UniProtKB:P13385") "CRGF (human)") +AnnotationAssertion(Annotation( "UniProtKB:P13385") "cripto, EGF-CFC family member (human)") AnnotationAssertion(Annotation( "UniProtKB:P13385") "cripto-1 growth factor (human)") AnnotationAssertion(Annotation( "UniProtKB:P13385") "epidermal growth factor-like cripto protein CR1 (human)") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hTDGF1") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCRIPTO") +AnnotationAssertion(Annotation( "UniProtKB:P13385") "teratocarcinoma-derived growth factor 1 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P13385") Annotation( ) "CRIPTO") +AnnotationAssertion(Annotation( "UniProtKB:P13385") Annotation( ) "CRIPTO-1") AnnotationAssertion(Annotation( "UniProtKB:P13385") Annotation( ) "TDGF1") AnnotationAssertion( "PR:P13385") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "teratocarcinoma-derived growth factor 1 (human)") +AnnotationAssertion(rdfs:label "protein Cripto (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -185538,7 +186240,7 @@ SubClassOf( ObjectSomeValuesFrom( (serpin H1 (chicken)) -AnnotationAssertion(Annotation( "OMA:P13731") Annotation( "PANTHER:PTHR11461:SF27") Annotation( "PRO:DNx") "A serpin H1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P13731") Annotation( "PRO:DNx") "A serpin H1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P13731") AnnotationAssertion(Annotation( "UniProtKB:P13731") "47 kDa heat shock protein (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SERPINH1") @@ -185649,7 +186351,7 @@ SubClassOf( ObjectSomeValuesFrom( (myelomonocytic growth factor (chicken)) -AnnotationAssertion(Annotation( "OMA:P13854") Annotation( "PANTHER:PTHR10511:SF2") Annotation( "PRO:DNx") "A granulocyte colony-stimulating factor that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A granulocyte colony-stimulating factor that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P13854") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CSF3") AnnotationAssertion( "protein") @@ -186000,7 +186702,7 @@ SubClassOf( ObjectSomeValuesFrom( (F-actin-capping protein subunit beta isoforms 1 and 2 (chicken)) -AnnotationAssertion(Annotation( "OMA:P14315") Annotation( "PANTHER:PTHR10619:SF0") Annotation( "PRO:DNx") "An F-actin-capping protein subunit beta that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P14315") Annotation( "PRO:DNx") "An F-actin-capping protein subunit beta that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P14315") AnnotationAssertion(Annotation( "UniProtKB:P14315") "CapZ B1 and B2 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P14315") "beta-actinin subunit II (chicken)") @@ -186084,7 +186786,6 @@ AnnotationAssertion(Annotation(rdfs:label "PR:P14373 located_in GO:0005654") "Reactome:R-HSA-8851002") AnnotationAssertion( "UniProtKB:P14373") AnnotationAssertion(Annotation( "UniProtKB:P14373") "RING finger protein 76 (human)") -AnnotationAssertion(Annotation( "UniProtKB:P14373") "RING-type E3 ubiquitin transferase TRIM27 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hTRIM27") AnnotationAssertion(Annotation( "UniProtKB:P14373") "ret finger protein (human)") AnnotationAssertion(Annotation( "UniProtKB:P14373") "tripartite motif-containing protein 27 (human)") @@ -186321,7 +187022,7 @@ SubClassOf( ObjectSomeValuesFrom( (prolactin (chicken)) -AnnotationAssertion(Annotation( "OMA:P14676") Annotation( "PANTHER:PTHR11417:SF4") Annotation( "PRO:DNx") "A prolactin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P14676") Annotation( "PRO:DNx") "A prolactin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P14676") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PRL") AnnotationAssertion( "protein") @@ -186400,7 +187101,7 @@ SubClassOf( ObjectSomeValuesFrom( (heme oxygenase 1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10720:SF1") Annotation( "PRO:DNx") "A heme oxygenase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A heme oxygenase 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P14791") AnnotationAssertion(Annotation( "UniProtKB:P14791") "HO-1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HMOX1") @@ -186538,6 +187239,7 @@ SubClassOf( ObjectSomeValuesFrom( (junction plakoglobin (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P14923") "A junction plakoglobin that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:P14923 located_in GO:0005829") "Reactome:R-HSA-201598") AnnotationAssertion(Annotation(rdfs:label "PR:P14923 located_in GO:0005886") "Reactome:R-HSA-437260") AnnotationAssertion(Annotation(rdfs:label "PR:P14923 located_in GO:0035580") "Reactome:R-HSA-6799534") AnnotationAssertion(Annotation(rdfs:label "PR:P14923 located_in GO:1904813") "Reactome:R-HSA-6801028") @@ -186769,7 +187471,7 @@ SubClassOf( ObjectSomeValuesFrom( (POU domain, class 2, transcription factor 1 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A POU domain, class 2, transcription factor 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P15143") Annotation( "PRO:DNx") "A POU domain, class 2, transcription factor 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P15143") AnnotationAssertion(Annotation( "UniProtKB:P15143") "NF-A1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P15143") "OTF-1 (chicken)") @@ -187184,6 +187886,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:P15515") "A histatin-1 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P15515") +AnnotationAssertion(Annotation( "UniProtKB:P15515") "Hst1") AnnotationAssertion(Annotation( "UniProtKB:P15515") "PPB (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hHTN1") AnnotationAssertion(Annotation( "UniProtKB:P15515") "histidine-rich protein 1 (human)") @@ -187204,9 +187907,11 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:P15516") "A histatin-3 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P15516") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( "UniProtKB:P15516") "Hst (human)") +AnnotationAssertion(Annotation( "UniProtKB:P15516") "Hst 3") AnnotationAssertion(Annotation( "UniProtKB:P15516") "PB (human)") AnnotationAssertion(Annotation( "UniProtKB:P15516") "basic histidine-rich protein (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hHTN3") +AnnotationAssertion(Annotation( "UniProtKB:P15516") "histatin 3 (human)") AnnotationAssertion(Annotation( "UniProtKB:P15516") "histidine-rich protein 3 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P15516") Annotation( ) "HIS2") @@ -187355,11 +188060,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (vascular endothelial growth factor A (human)) +# Class: (vascular endothelial growth factor A, long form (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P15692") "A vascular endothelial growth factor A that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P15692") "A vascular endothelial growth factor A, long form that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P15692") -AnnotationAssertion(Annotation( "UniProtKB:P15692") "VEGF-A (human)") +AnnotationAssertion(Annotation( "UniProtKB:P15692") "L-VEGF (human)") AnnotationAssertion(Annotation( "UniProtKB:P15692") "VPF (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hVEGFA") AnnotationAssertion(Annotation( "UniProtKB:P15692") "vascular permeability factor (human)") @@ -187368,7 +188073,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P15692") Annotation( ) "VEGFA") AnnotationAssertion( "PR:P15692") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "vascular endothelial growth factor A (human)") +AnnotationAssertion(rdfs:label "vascular endothelial growth factor A, long form (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -187398,7 +188103,7 @@ SubClassOf( ObjectSomeValuesFrom( (myelin basic protein (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11429:SF0") Annotation( "PRO:DNx") "A myelin basic protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A myelin basic protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P15720") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MBP") AnnotationAssertion( "protein") @@ -187414,7 +188119,7 @@ SubClassOf( ObjectSomeValuesFrom( (parathyroid hormone (chicken)) -AnnotationAssertion(Annotation( "OMA:P15743") Annotation( "PANTHER:PTHR10541:SF2") Annotation( "PRO:DNx") "A parathyroid hormone that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P15743") Annotation( "PRO:DNx") "A parathyroid hormone that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P15743") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PTH") AnnotationAssertion( "protein") @@ -187430,7 +188135,7 @@ SubClassOf( ObjectSomeValuesFrom( (nucleolin (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24012:SF62") Annotation( "PRO:DNx") "A nucleolin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A nucleolin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P15771") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-NCL") AnnotationAssertion(Annotation( "UniProtKB:P15771") "protein C23 (chicken)") @@ -187657,7 +188362,7 @@ SubClassOf( ObjectSomeValuesFrom( (collagen alpha-2(VI) chain (chicken)) -AnnotationAssertion(Annotation( "OMA:P15988") Annotation( "PANTHER:PTHR24023:SF67") Annotation( "PRO:DNx") "A collagen alpha-2(VI) chain that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P15988") Annotation( "PRO:DNx") "A collagen alpha-2(VI) chain that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P15988") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-COL6A2") AnnotationAssertion( "protein") @@ -188239,6 +188944,24 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (myosin-binding protein C, fast-type (chicken)) + +AnnotationAssertion(Annotation( "OMA:P16419") Annotation( "PRO:DNx") "A myosin-binding protein C, fast-type that is encoded in the genome of chicken.") +AnnotationAssertion( "UniProtKB:P16419") +AnnotationAssertion(Annotation( "UniProtKB:P16419") "C-protein, skeletal muscle fast isoform (chicken)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MYBPC2") +AnnotationAssertion(Annotation( "UniProtKB:P16419") "fast MyBP-C (chicken)") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:P16419") Annotation( ) "MYBPC2") +AnnotationAssertion( "PR:P16419") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "myosin-binding protein C, fast-type (chicken)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (histo-blood group ABO system transferase (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P16442") "A histo-blood group ABO system transferase that is encoded in the genome of human.") @@ -188407,7 +189130,7 @@ SubClassOf( ObjectSomeValuesFrom( (glutamine synthetase (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR20852:SF14") Annotation( "PRO:DNx") "A glutamine synthetase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P16580") Annotation( "PRO:DNx") "A glutamine synthetase that is encoded in the genome of chicken.") AnnotationAssertion(Annotation( "UniProtKB:P16580") "p42 (chicken)") AnnotationAssertion( "UniProtKB:P16580") AnnotationAssertion(Annotation( "UniProtKB:P16580") "GS (chicken)") @@ -189739,6 +190462,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P18283") "glutathione peroxidase-gastrointestinal (human)") AnnotationAssertion(Annotation( "UniProtKB:P18283") "glutathione peroxidase-related protein 2 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hGPX2") +AnnotationAssertion(Annotation( "UniProtKB:P18283") "phospholipid hydroperoxide glutathione peroxidase GPX2 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P18283") Annotation( ) "GPX2") AnnotationAssertion( "PR:P18283") @@ -189908,6 +190632,8 @@ AnnotationAssertion(Annotation( "UniProtKB:P18519") "gp80-LNGFR (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P18519") "low affinity neurotrophin receptor p75NTR (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P18519") "low-affinity nerve growth factor receptor (chicken)") +AnnotationAssertion(Annotation( "UniProtKB:P18519") "low-affinity nerve growth factor receptor p75NGFR (chicken)") +AnnotationAssertion(Annotation( "UniProtKB:P18519") "low-affinity nerve growth factor receptor p75NGR (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P18519") "p75 ICD (chicken)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P18519") Annotation( ) "NGFR") @@ -189957,7 +190683,7 @@ SubClassOf( ObjectSomeValuesFrom( (Fos-related antigen 2 (chicken)) -AnnotationAssertion(Annotation( "OMA:P18625") Annotation( "PANTHER:PTHR23351:SF6") Annotation( "PRO:DNx") "A Fos-related antigen 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P18625") Annotation( "PRO:DNx") "A Fos-related antigen 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P18625") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-FOSL2") AnnotationAssertion( "protein") @@ -190382,7 +191108,7 @@ SubClassOf( ObjectSomeValuesFrom( (calsequestrin-2 (chicken)) -AnnotationAssertion(Annotation( "OMA:P19204") Annotation( "PANTHER:PTHR10033:SF2") Annotation( "PRO:DNx") "A calsequestrin-2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P19204") Annotation( "PRO:DNx") "A calsequestrin-2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P19204") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CASQ2") AnnotationAssertion(Annotation( "UniProtKB:P19204") "laminin-binding protein (chicken)") @@ -190542,7 +191268,7 @@ SubClassOf( ObjectSomeValuesFrom( (CCN family member 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:P19336") Annotation( "PANTHER:PTHR11348:SF6") Annotation( "PRO:DNx") "A CCN family member 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P19336") Annotation( "PRO:DNx") "A CCN family member 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P19336") AnnotationAssertion(Annotation( "UniProtKB:P19336") "cellular communication network factor 1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CCN1") @@ -190770,7 +191496,6 @@ AnnotationAssertion( "UniProtKB:P19474") "52 kDa Ro protein (human)") AnnotationAssertion(Annotation( "UniProtKB:P19474") "52 kDa ribonucleoprotein autoantigen Ro/SS-A (human)") AnnotationAssertion(Annotation( "UniProtKB:P19474") "RING finger protein 81 (human)") -AnnotationAssertion(Annotation( "UniProtKB:P19474") "RING-type E3 ubiquitin transferase TRIM21 (human)") AnnotationAssertion(Annotation( "UniProtKB:P19474") "Ro(SS-A) (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hTRIM21") AnnotationAssertion(Annotation( "UniProtKB:P19474") "tripartite motif-containing protein 21 (human)") @@ -190806,7 +191531,7 @@ SubClassOf( ObjectSomeValuesFrom( (fibroblast growth factor 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:P19596") Annotation( "PANTHER:PTHR11486:SF14") Annotation( "PRO:DNx") "A fibroblast growth factor 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P19596") Annotation( "PRO:DNx") "A fibroblast growth factor 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P19596") AnnotationAssertion(Annotation( "UniProtKB:P19596") "ECGF (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P19596") "FGF-1 (chicken)") @@ -191239,7 +191964,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:P20042") "A eukaryotic translation initiation factor 2 subunit 2 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P20042") -AnnotationAssertion(Annotation( "UniProtKB:P20042") "eIF-2-beta (human)") +AnnotationAssertion(Annotation( "UniProtKB:P20042") "eIF2-beta (human)") AnnotationAssertion(Annotation( "UniProtKB:P20042") "eukaryotic translation initiation factor 2 subunit beta (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hEIF2S2") AnnotationAssertion( "protein") @@ -191976,7 +192701,7 @@ SubClassOf( ObjectSomeValuesFrom( (collagen alpha-1(VI) chain (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24023:SF68") Annotation( "PRO:DNx") "A collagen alpha-1(VI) chain that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P20785") Annotation( "PRO:DNx") "A collagen alpha-1(VI) chain that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P20785") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-COL6A1") AnnotationAssertion( "protein") @@ -192661,7 +193386,7 @@ SubClassOf( ObjectSomeValuesFrom( (phosphoenolpyruvate carboxykinase [GTP], mitochondrial (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11561:SF0") Annotation( "PRO:DNx") "A phosphoenolpyruvate carboxykinase [GTP], mitochondrial that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P21642") Annotation( "PRO:DNx") "A phosphoenolpyruvate carboxykinase [GTP], mitochondrial that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P21642") AnnotationAssertion(Annotation( "UniProtKB:P21642") "PEPCK-M (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PCK2") @@ -192931,7 +193656,7 @@ SubClassOf( ObjectSomeValuesFrom( (fibroblast growth factor receptor 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:P21804") Annotation( "PRO:DNx") "A fibroblast growth factor receptor 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:CNA") "A fibroblast growth factor receptor 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P21804") AnnotationAssertion(Annotation( "UniProtKB:P21804") "FGFR-1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P21804") "bFGF-R-1 (chicken)") @@ -193520,16 +194245,17 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L5 (chicken)) +# Class: (large ribosomal subunit protein uL18 (chicken)) -AnnotationAssertion(Annotation( "OMA:P22451") Annotation( "PANTHER:PTHR23410:SF3") Annotation( "PRO:DNx") "A 60S ribosomal protein L5 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P22451") Annotation( "PRO:DNx") "A eukaryotic-type large ribosomal subunit protein uL18 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P22451") +AnnotationAssertion(Annotation( "UniProtKB:P22451") "60S ribosomal protein L5 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RPL5") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P22451") Annotation( ) "RPL5") AnnotationAssertion( "PR:P22451") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L5 (chicken)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL18 (chicken)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -193734,9 +194460,9 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (nuclear receptor subfamily 4 group A member 1 (human)) +# Class: (nuclear receptor subfamily 4 immunity group A member 1 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P22736") "A nuclear receptor subfamily 4 group A member 1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P22736") "A nuclear receptor subfamily 4 immunity group A member 1 that is encoded in the genome of human.") AnnotationAssertion( "DTO:00117520") AnnotationAssertion(Annotation(rdfs:label "PR:P22736 located_in GO:0005654") "Reactome:R-HSA-199831") AnnotationAssertion( "UniProtKB:P22736") @@ -193755,7 +194481,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P22736") Annotation( ) "NR4A1") AnnotationAssertion( "PR:P22736") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "nuclear receptor subfamily 4 group A member 1 (human)") +AnnotationAssertion(rdfs:label "nuclear receptor subfamily 4 immunity group A member 1 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -194063,7 +194789,7 @@ SubClassOf( ObjectSomeValuesFrom( (hydroxymethylglutaryl-CoA synthase, cytoplasmic (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11877:SF10") Annotation( "PRO:DNx") "A hydroxymethylglutaryl-CoA synthase, cytoplasmic that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P23228") Annotation( "PRO:DNx") "A hydroxymethylglutaryl-CoA synthase, cytoplasmic that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P23228") AnnotationAssertion(Annotation( "UniProtKB:P23228") "3-hydroxy-3-methylglutaryl coenzyme A synthase (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P23228") "HMG-CoA synthase (chicken)") @@ -194473,7 +195199,7 @@ SubClassOf( ObjectSomeValuesFrom( (brain acid soluble protein 1 homolog (chicken)) -AnnotationAssertion(Annotation( "OMA:P23614") Annotation( "PANTHER:PTHR23212:SF0") Annotation( "PRO:DNx") "A brain acid soluble protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P23614") Annotation( "PRO:DNx") "A brain acid soluble protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P23614") AnnotationAssertion(Annotation( "UniProtKB:P23614") "23 kDa cortical cytoskeleton-associated protein (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P23614") "CAP-23 (chicken)") @@ -194637,7 +195363,7 @@ SubClassOf( ObjectSomeValuesFrom( (GATA-binding factor 2 (chicken)) -AnnotationAssertion(Annotation( "OMA:P23824") Annotation( "PANTHER:PTHR10071:SF107") Annotation( "PRO:DNx") "An endothelial transcription factor GATA-2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P23824") Annotation( "PRO:DNx") "An endothelial transcription factor GATA-2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P23824") AnnotationAssertion(Annotation( "UniProtKB:P23824") "GATA-2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-GATA2") @@ -194655,7 +195381,7 @@ SubClassOf( ObjectSomeValuesFrom( (GATA-binding factor 3 (chicken)) -AnnotationAssertion(Annotation( "OMA:P23825") Annotation( "PANTHER:PTHR10071:SF106") Annotation( "PRO:DNx") "A trans-acting T-cell-specific transcription factor GATA-3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P23825") Annotation( "PRO:DNx") "A trans-acting T-cell-specific transcription factor GATA-3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P23825") AnnotationAssertion(Annotation( "UniProtKB:P23825") "GATA-3 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-GATA3") @@ -194930,7 +195656,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein S100-A11 (chicken)) -AnnotationAssertion(Annotation( "OMA:P24479") Annotation( "PANTHER:PTHR11639:SF7") Annotation( "PRO:DNx") "A protein S100-A11 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P24479") Annotation( "PRO:DNx") "A protein S100-A11 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P24479") AnnotationAssertion(Annotation( "UniProtKB:P24479") "S100 calcium-binding protein A11 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P24479") "calgizzarin (chicken)") @@ -194948,7 +195674,7 @@ SubClassOf( ObjectSomeValuesFrom( (cadherin-4 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24027:SF99") Annotation( "PRO:DNx") "A cadherin-4 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P24503") Annotation( "PRO:DNx") "A cadherin-4 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P24503") AnnotationAssertion(Annotation( "UniProtKB:P24503") "R-CAD (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P24503") "R-cadherin (chicken)") @@ -195358,7 +196084,7 @@ SubClassOf( ObjectSomeValuesFrom( (coagulation factor X (chicken)) -AnnotationAssertion(Annotation( "OMA:P25155") Annotation( "PANTHER:PTHR24265:SF64") Annotation( "PRO:DNx") "A coagulation factor X that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P25155") Annotation( "PRO:DNx") "A coagulation factor X that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P25155") AnnotationAssertion(Annotation( "UniProtKB:P25155") "VAP (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-F10") @@ -195430,17 +196156,17 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S12 (human)) +# Class: (small ribosomal subunit protein eS12 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P25398") "A 40S ribosomal protein S12 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P25398") "A small ribosomal subunit protein eS12 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P25398") +AnnotationAssertion(Annotation( "UniProtKB:P25398") "40S ribosomal protein S12 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRPS12") -AnnotationAssertion(Annotation( "UniProtKB:P25398") "small ribosomal subunit protein eS12 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P25398") Annotation( ) "RPS12") AnnotationAssertion( "PR:P25398") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S12 (human)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS12 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -195764,7 +196490,7 @@ SubClassOf( ObjectSomeValuesFrom( (integrin alpha-V (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "An integrin alpha-V that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P26008") Annotation( "PRO:DNx") "An integrin alpha-V that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P26008") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ITGAV") AnnotationAssertion(Annotation( "UniProtKB:P26008") "vitronectin receptor subunit alpha (chicken)") @@ -195888,7 +196614,7 @@ SubClassOf( ObjectSomeValuesFrom( (neuronal acetylcholine receptor subunit alpha-5 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR18945:SF76") Annotation( "PRO:DNx") "A neuronal acetylcholine receptor subunit alpha-5 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A neuronal acetylcholine receptor subunit alpha-5 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P26152") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CHRNA5") AnnotationAssertion( "protein") @@ -196090,6 +196816,22 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (ciliary neurotrophic factor (human)) + +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P26441") "A ciliary neurotrophic factor that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:P26441 located_in GO:0005576") "Reactome:R-HSA-5696441") +AnnotationAssertion( "UniProtKB:P26441") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCNTF") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:P26441") Annotation( ) "CNTF") +AnnotationAssertion( "PR:P26441") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "ciliary neurotrophic factor (human)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (glutamate dehydrogenase 1, mitochondrial (mouse)) AnnotationAssertion(Annotation( "OMA:P26443") Annotation( "PRO:DNx") "A glutamate dehydrogenase 1, mitochondrial that is encoded in the genome of mouse.") @@ -196692,7 +197434,7 @@ SubClassOf( ObjectSomeValuesFrom( (inhibin beta A chain (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11848:SF28") Annotation( "PRO:DNx") "An activin/inhibin beta A chain that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P27092") Annotation( "PRO:DNx") "An activin/inhibin beta A chain that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P27092") AnnotationAssertion(Annotation( "UniProtKB:P27092") "activin beta-A chain (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-INHBA") @@ -196970,7 +197712,6 @@ SubClassOf( ObjectSomeValuesFrom( (aryl hydrocarbon receptor nuclear translocator (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P27540") "An aryl hydrocarbon receptor nuclear translocator that is encoded in the genome of human.") -AnnotationAssertion(Annotation(rdfs:label "PR:P27540 located_in GO:0005654") "Reactome:R-HSA-1234098") AnnotationAssertion( "UniProtKB:P27540") AnnotationAssertion(Annotation( "UniProtKB:P27540") "ARNT protein (human)") AnnotationAssertion(Annotation( "UniProtKB:P27540") "HIF-1-beta (human)") @@ -197128,7 +197869,7 @@ SubClassOf( ObjectSomeValuesFrom( (transthyretin (chicken)) -AnnotationAssertion(Annotation( "OMA:P27731") Annotation( "PANTHER:PTHR10395:SF7") Annotation( "PRO:DNx") "A transthyretin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P27731") Annotation( "PRO:DNx") "A transthyretin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P27731") AnnotationAssertion(Annotation( "UniProtKB:P27731") "TBPA (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TTR") @@ -197191,19 +197932,20 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (cAMP-specific 3',5'-cyclic phosphodiesterase 4A (human)) +# Class: (3',5'-cyclic-AMP phosphodiesterase 4A (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P27815") "A cAMP-specific 3',5'-cyclic phosphodiesterase 4A that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P27815") "A 3',5'-cyclic-AMP phosphodiesterase 4A that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:P27815 located_in GO:0005829") "Reactome:R-HSA-52383") AnnotationAssertion( "UniProtKB:P27815") AnnotationAssertion(Annotation( "UniProtKB:P27815") "PDE46 (human)") +AnnotationAssertion(Annotation( "UniProtKB:P27815") "cAMP-specific phosphodiesterase 4A (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPDE4A") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P27815") Annotation( ) "DPDE2") AnnotationAssertion(Annotation( "UniProtKB:P27815") Annotation( ) "PDE4A") AnnotationAssertion( "PR:P27815") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "cAMP-specific 3',5'-cyclic phosphodiesterase 4A (human)") +AnnotationAssertion(rdfs:label "3',5'-cyclic-AMP phosphodiesterase 4A (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -197242,7 +197984,9 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (phosphatidylinositol 3-kinase regulatory subunit alpha (human)) @@ -197590,7 +198334,7 @@ SubClassOf( ObjectSomeValuesFrom( (homeobox protein MSX-2 (chicken)) -AnnotationAssertion(Annotation( "OMA:P28362") Annotation( "PANTHER:PTHR24338:SF137") Annotation( "PRO:DNx") "A homeobox protein MSX-2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P28362") Annotation( "PRO:DNx") "A homeobox protein MSX-2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P28362") AnnotationAssertion(Annotation( "UniProtKB:P28362") "CHOX-8 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P28362") "GHox-8 (chicken)") @@ -197616,7 +198360,6 @@ AnnotationAssertion(Annotation( "UniProtKB:P28474") "FALDH (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P28474") "GSH-FDH (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P28474") "S-(hydroxymethyl)glutathione dehydrogenase (mouse)") -AnnotationAssertion(Annotation( "UniProtKB:P28474") "alcohol dehydrogenase 2 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P28474") "alcohol dehydrogenase 5 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P28474") "alcohol dehydrogenase B2 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P28474") "alcohol dehydrogenase class-III (mouse)") @@ -197627,6 +198370,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P28474") Annotation( ) "Adh2") AnnotationAssertion(Annotation( "UniProtKB:P28474") Annotation( ) "Adh5") AnnotationAssertion(Annotation( "UniProtKB:P28474") "FDH (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:P28474") "alcohol dehydrogenase 2 (mouse)") AnnotationAssertion( "PR:P28474") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "alcohol dehydrogenase class-3 (mouse)") @@ -197823,7 +198567,7 @@ SubClassOf( ObjectSomeValuesFrom( (pro-neuropeptide Y (chicken)) -AnnotationAssertion(Annotation( "OMA:P28673") Annotation( "PANTHER:PTHR10533:SF4") Annotation( "PRO:DNx") "A neuropeptide Y that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P28673") Annotation( "PRO:DNx") "A neuropeptide Y that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P28673") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-NPY") AnnotationAssertion( "protein") @@ -198107,7 +198851,7 @@ AnnotationAssertion(Annotation( "ADP-ribosyl cyclase 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:P28907") "ADPRC 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:P28907") "T10 (human)") -AnnotationAssertion(Annotation( "UniProtKB:P28907") "cADPr hydrolase 1 (human)") +AnnotationAssertion(Annotation( "UniProtKB:P28907") "cADPR hydrolase 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:P28907") "cyclic ADP-ribose hydrolase 1 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCD38") AnnotationAssertion( "protein") @@ -198367,7 +199111,7 @@ SubClassOf( ObjectSomeValuesFrom( (ephrin type-A receptor 3 (chicken)) -AnnotationAssertion(Annotation( "OMA:P29318") Annotation( "PANTHER:PTHR24416:SF278") Annotation( "PRO:DNx") "An ephrin type-A receptor 3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P29318") Annotation( "PRO:DNx") "An ephrin type-A receptor 3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P29318") AnnotationAssertion(Annotation( "UniProtKB:P29318") "EK4 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P29318") "EPH-like kinase 4 (chicken)") @@ -198497,7 +199241,7 @@ SubClassOf( ObjectSomeValuesFrom( (G2/mitotic-specific cyclin-B2 (chicken)) -AnnotationAssertion(Annotation( "OMA:P29332") Annotation( "PRO:DNx") "A G2/mitotic-specific cyclin-B2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:CNA") "A G2/mitotic-specific cyclin-B2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P29332") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CCNB2") AnnotationAssertion( "protein") @@ -198614,9 +199358,9 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (nitric oxide synthase, endothelial (human)) +# Class: (nitric oxide synthase 3 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P29474") "A nitric oxide synthase, endothelial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P29474") "A nitric oxide synthase 3 that is encoded in the genome of human.") AnnotationAssertion(Annotation( "UniProtKB:P29474") "constitutive NOS (human)") AnnotationAssertion( "UniProtKB:P29474") AnnotationAssertion(Annotation( "UniProtKB:P29474") "EC-NOS (human)") @@ -198626,11 +199370,12 @@ AnnotationAssertion(Annotation( "UniProtKB:P29474") "eNOS (human)") AnnotationAssertion(Annotation( "UniProtKB:P29474") "endothelial NOS (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNOS3") +AnnotationAssertion(Annotation( "UniProtKB:P29474") "nitric oxide synthase, endothelial (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P29474") Annotation( ) "NOS3") AnnotationAssertion( "PR:P29474") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "nitric oxide synthase, endothelial (human)") +AnnotationAssertion(rdfs:label "nitric oxide synthase 3 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -198960,18 +199705,18 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L12 (human)) +# Class: (large ribosomal subunit protein uL11 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P30050") "A 60S ribosomal protein L12 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P30050") "A eukaryotic-type large ribosomal subunit protein uL11 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:P30050 located_in GO:0005829") "Reactome:R-HSA-72408") AnnotationAssertion( "UniProtKB:P30050") +AnnotationAssertion(Annotation( "UniProtKB:P30050") "60S ribosomal protein L12 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRPL12") -AnnotationAssertion(Annotation( "UniProtKB:P30050") "large ribosomal subunit protein uL11 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P30050") Annotation( ) "RPL12") AnnotationAssertion( "PR:P30050") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L12 (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL11 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -199600,7 +200345,7 @@ SubClassOf( ObjectSomeValuesFrom( (T-cell-specific surface glycoprotein CD28 homolog (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11494:SF6") Annotation( "PRO:DNx") "A T-cell-specific surface glycoprotein CD28 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:WCB") "A T-cell-specific surface glycoprotein CD28 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P31043") AnnotationAssertion(Annotation( "UniProtKB:P31043") "CHT28 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CD28") @@ -199787,7 +200532,7 @@ SubClassOf( ObjectSomeValuesFrom( (stathmin (chicken)) -AnnotationAssertion(Annotation( "OMA:P31395") Annotation( "PANTHER:PTHR10104:SF5") Annotation( "PRO:DNx") "A stathmin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P31395") Annotation( "PRO:DNx") "A stathmin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P31395") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-STMN1") AnnotationAssertion( "protein") @@ -200287,6 +201032,7 @@ SubClassOf( ObjectSomeValuesFrom( (homeobox protein OTX2 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P32243") "A homeobox protein OTX2 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:P32243 located_in GO:0005654") "Reactome:R-HSA-9832936") AnnotationAssertion( "UniProtKB:P32243") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hOTX2") AnnotationAssertion(Annotation( "UniProtKB:P32243") "orthodenticle homolog 2 (human)") @@ -200738,7 +201484,7 @@ SubClassOf( ObjectSomeValuesFrom( (anosmin-1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR14131:SF0") Annotation( "PRO:DNx") "An anosmin-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P33005") Annotation( "PRO:DNx") "An anosmin-1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P33005") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ANOS1") AnnotationAssertion(Annotation( "UniProtKB:P33005") "kallmann syndrome protein homolog (chicken)") @@ -200757,7 +201503,7 @@ SubClassOf( ObjectSomeValuesFrom( (somatostatin (chicken)) -AnnotationAssertion(Annotation( "OMA:P33094") Annotation( "PANTHER:PTHR10558:SF0") Annotation( "PRO:DNx") "A somatostatin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P33094") Annotation( "PRO:DNx") "A somatostatin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P33094") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SST") AnnotationAssertion( "protein") @@ -200773,7 +201519,7 @@ SubClassOf( ObjectSomeValuesFrom( (cadherin-13 (chicken)) -AnnotationAssertion(Annotation( "OMA:P33150") Annotation( "PRO:DNx") "A cadherin-13 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A cadherin-13 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P33150") AnnotationAssertion(Annotation( "UniProtKB:P33150") "T-cad (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P33150") "T-cadherin (chicken)") @@ -201051,7 +201797,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein BTG1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR22978:SF7") Annotation( "PRO:DNx") "A protein BTG1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P34743") Annotation( "PRO:DNx") "A protein BTG1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P34743") AnnotationAssertion(Annotation( "UniProtKB:P34743") "B-cell translocation gene 1 protein (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-BTG1") @@ -201485,6 +202231,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:P35236") "A tyrosine-protein phosphatase non-receptor type 7 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:P35236 located_in GO:0005654") "Reactome:R-HSA-9008913") +AnnotationAssertion(Annotation(rdfs:label "PR:P35236 located_in GO:0005829") "Reactome:R-HSA-9635737") AnnotationAssertion( "UniProtKB:P35236") AnnotationAssertion(Annotation( "UniProtKB:P35236") "HEPTP (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPTPN7") @@ -202409,16 +203156,17 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L12 (mouse)) +# Class: (large ribosomal subunit protein uL11 (mouse)) -AnnotationAssertion(Annotation( "OMA:P35979") Annotation( "PRO:DNx") "A 60S ribosomal protein L12 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P35979") Annotation( "PRO:DNx") "A eukaryotic-type large ribosomal subunit protein uL11 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P35979") +AnnotationAssertion(Annotation( "UniProtKB:P35979") "60S ribosomal protein L12 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRPL12") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P35979") Annotation( ) "Rpl12") AnnotationAssertion( "PR:P35979") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L12 (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL11 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -202549,7 +203297,7 @@ SubClassOf( ObjectSomeValuesFrom( (gap junction alpha-8 protein (chicken)) -AnnotationAssertion(Annotation( "OMA:P36381") Annotation( "PANTHER:PTHR11984:SF19") Annotation( "PRO:DNx") "A gap junction alpha-8 protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P36381") Annotation( "PRO:DNx") "A gap junction alpha-8 protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P36381") AnnotationAssertion(Annotation( "UniProtKB:P36381") "Cx45.6 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-GJA8") @@ -202981,7 +203729,7 @@ SubClassOf( ObjectSomeValuesFrom( (progonadoliberin-1 (chicken)) -AnnotationAssertion(Annotation( "OMA:P37042") Annotation( "PANTHER:PTHR10522:SF0") Annotation( "PRO:DNx") "A progonadoliberin-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P37042") Annotation( "PRO:DNx") "A progonadoliberin-1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P37042") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-GNRH1") AnnotationAssertion(Annotation( "UniProtKB:P37042") "progonadoliberin I (chicken)") @@ -203147,7 +203895,7 @@ SubClassOf( ObjectSomeValuesFrom( (DNA repair protein RAD51 homolog 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:P37383") Annotation( "PANTHER:PTHR22942:SF12") Annotation( "PRO:DNx") "A DNA repair protein RAD51 homolog 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P37383") Annotation( "PRO:DNx") "A DNA repair protein RAD51 homolog 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P37383") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RAD51") AnnotationAssertion( "protein") @@ -203225,7 +203973,7 @@ SubClassOf( ObjectSomeValuesFrom( (multifunctional protein ADE2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11609:SF2") Annotation( "PRO:DNx") "A bifunctional phosphoribosylaminoimidazole carboxylase/phosphoribosylaminoimidazole succinocarboxamide synthetase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A bifunctional phosphoribosylaminoimidazole carboxylase/phosphoribosylaminoimidazole succinocarboxamide synthetase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P38024") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PAICS") AnnotationAssertion( "protein") @@ -203399,17 +204147,17 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S19 (human)) +# Class: (small ribosomal subunit protein eS19 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P39019") "A 40S ribosomal protein S19 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P39019") "A small ribosomal subunit protein eS19 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P39019") +AnnotationAssertion(Annotation( "UniProtKB:P39019") "40S ribosomal protein S19 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRPS19") -AnnotationAssertion(Annotation( "UniProtKB:P39019") "small ribosomal subunit protein eS19 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P39019") Annotation( ) "RPS19") AnnotationAssertion( "PR:P39019") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S19 (human)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS19 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -203438,6 +204186,8 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:P39053") Annotation( "PRO:DNx") "A dynamin-1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P39053") +AnnotationAssertion(Annotation( "UniProtKB:P39053") "dynamin (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:P39053") "dynamin I (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mDNM1") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P39053") Annotation( ) "Dnm") @@ -205072,6 +205822,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:WCB") Annotation( "UniProtKB:P42229") "A signal transducer and activator of transcription 5a that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:P42229 located_in GO:0005829") "Reactome:R-HSA-380747") +AnnotationAssertion(Annotation(rdfs:label "PR:P42229 located_in GO:0005654") "Reactome:R-HSA-9701901") AnnotationAssertion( "UniProtKB:P42229") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSTAT5A") AnnotationAssertion( "protein") @@ -205385,7 +206136,7 @@ SubClassOf( ObjectSomeValuesFrom( (inhibin alpha chain (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10863:SF0") Annotation( "PRO:DNx") "An inhibin alpha chain that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P43031") Annotation( "PRO:DNx") "An inhibin alpha chain that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P43031") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-INHA") AnnotationAssertion( "protein") @@ -205449,6 +206200,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P43120") "homeobox protein PRH (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mHHEX") AnnotationAssertion(Annotation( "UniProtKB:P43120") "mHex") +AnnotationAssertion(Annotation( "UniProtKB:P43120") "proline-rich homeodomain protein (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P43120") Annotation( ) "Hhex") AnnotationAssertion(Annotation( "UniProtKB:P43120") Annotation( ) "Prh") @@ -206680,18 +207432,18 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L5 (human)) +# Class: (large ribosomal subunit protein uL18 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P46777") "A 60S ribosomal protein L5 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P46777") "A eukaryotic-type large ribosomal subunit protein uL18 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P46777") +AnnotationAssertion(Annotation( "UniProtKB:P46777") "60S ribosomal protein L5 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRPL5") -AnnotationAssertion(Annotation( "UniProtKB:P46777") "large ribosomal subunit protein uL18 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P46777") Annotation( ) "MSTP030") AnnotationAssertion(Annotation( "UniProtKB:P46777") Annotation( ) "RPL5") AnnotationAssertion( "PR:P46777") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L5 (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL18 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -206722,7 +207474,7 @@ SubClassOf( ObjectSomeValuesFrom( (transcriptional coactivator YAP1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR17616:SF7") Annotation( "PRO:DNx") "A transcriptional coactivator YAP1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A transcriptional coactivator YAP1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P46936") AnnotationAssertion(Annotation( "UniProtKB:P46936") "65 kDa Yes-associated protein (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P46936") "Yes-associated protein 1 (chicken)") @@ -206784,7 +207536,7 @@ SubClassOf( ObjectSomeValuesFrom( (synaptotagmin-1 (chicken)) -AnnotationAssertion(Annotation( "OMA:P47191") Annotation( "PANTHER:PTHR10024:SF39") Annotation( "PRO:DNx") "A synaptotagmin-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P47191") Annotation( "PRO:DNx") "A synaptotagmin-1 that is encoded in the genome of chicken.") AnnotationAssertion(Annotation( "UniProtKB:P47191") "p65 (chicken)") AnnotationAssertion( "UniProtKB:P47191") AnnotationAssertion(Annotation( "UniProtKB:P47191") "SytI (chicken)") @@ -207068,6 +207820,7 @@ AnnotationAssertion(Annotation( "Reactome:R-HSA-72557") AnnotationAssertion( "UniProtKB:P47813") AnnotationAssertion(Annotation( "UniProtKB:P47813") "eIF-1A X isoform (human)") +AnnotationAssertion(Annotation( "UniProtKB:P47813") "eIF1A X isoform (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hEIF1AX") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P47813") Annotation( ) "EIF1A") @@ -207081,16 +207834,17 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S4 (chicken)) +# Class: (small ribosomal subunit protein eS4 (chicken)) -AnnotationAssertion(Annotation( "OMA:P47836") Annotation( "PANTHER:PTHR11581:SF0") Annotation( "PRO:DNx") "A 40S ribosomal protein S4, X isoform that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P47836") Annotation( "PRO:DNx") "A small ribosomal subunit protein eS4, X isoform that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P47836") +AnnotationAssertion(Annotation( "UniProtKB:P47836") "40S ribosomal protein S4 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RPS4X") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P47836") Annotation( ) "RPS4") AnnotationAssertion( "PR:P47836") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S4 (chicken)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS4 (chicken)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -207277,21 +208031,21 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (aldehyde dehydrogenase family 1 member A3 (human)) +# Class: (retinaldehyde dehydrogenase 3 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P47895") "An aldehyde dehydrogenase family 1 member A3 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P47895") "A retinaldehyde dehydrogenase 3 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P47895") AnnotationAssertion(Annotation( "UniProtKB:P47895") "RALDH-3 (human)") AnnotationAssertion(Annotation( "UniProtKB:P47895") "RalDH3 (human)") AnnotationAssertion(Annotation( "UniProtKB:P47895") "aldehyde dehydrogenase 6 (human)") +AnnotationAssertion(Annotation( "UniProtKB:P47895") "aldehyde dehydrogenase family 1 member A3 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hALDH1A3") -AnnotationAssertion(Annotation( "UniProtKB:P47895") "retinaldehyde dehydrogenase 3 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P47895") Annotation( ) "ALDH1A3") AnnotationAssertion(Annotation( "UniProtKB:P47895") Annotation( ) "ALDH6") AnnotationAssertion( "PR:P47895") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "aldehyde dehydrogenase family 1 member A3 (human)") +AnnotationAssertion(rdfs:label "retinaldehyde dehydrogenase 3 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -207369,16 +208123,17 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L5 (mouse)) +# Class: (large ribosomal subunit protein uL18 (mouse)) -AnnotationAssertion(Annotation( "OMA:P47962") Annotation( "PRO:DNx") "A 60S ribosomal protein L5 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P47962") Annotation( "PRO:DNx") "A eukaryotic-type large ribosomal subunit protein uL18 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P47962") +AnnotationAssertion(Annotation( "UniProtKB:P47962") "60S ribosomal protein L5 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRPL5") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P47962") Annotation( ) "Rpl5") AnnotationAssertion( "PR:P47962") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L5 (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL18 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -207439,7 +208194,7 @@ SubClassOf( ObjectSomeValuesFrom( (xanthine dehydrogenase/oxidase (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11908:SF11") Annotation( "PRO:DNx") "A xanthine dehydrogenase/oxidase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P47990") Annotation( "PRO:DNx") "A xanthine dehydrogenase/oxidase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P47990") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-XDH") AnnotationAssertion( "protein") @@ -207719,7 +208474,7 @@ SubClassOf( ObjectSomeValuesFrom( (VIP peptides (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A VIP peptides that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P48143") Annotation( "PRO:DNx") "A VIP peptides that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P48143") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-VIP") AnnotationAssertion( "protein") @@ -207992,7 +208747,7 @@ SubClassOf( ObjectSomeValuesFrom( (transcription factor SOX-2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10270:SF47") Annotation( "PRO:DNx") "A transcription factor SOX-2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P48430") Annotation( "PRO:DNx") "A transcription factor SOX-2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P48430") AnnotationAssertion(Annotation( "UniProtKB:P48430") "cSox2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SOX2") @@ -208492,7 +209247,7 @@ SubClassOf( ObjectSomeValuesFrom( (fibroblast growth factor 3 (chicken)) -AnnotationAssertion(Annotation( "OMA:P48801") Annotation( "PANTHER:PTHR11486:SF26") Annotation( "PRO:DNx") "A fibroblast growth factor 3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P48801") Annotation( "PRO:DNx") "A fibroblast growth factor 3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P48801") AnnotationAssertion(Annotation( "UniProtKB:P48801") "HBGF-3 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-FGF3") @@ -208547,7 +209302,7 @@ SubClassOf( ObjectSomeValuesFrom( (transcriptional enhancer factor TEF-3 (chicken)) -AnnotationAssertion(Annotation( "OMA:P48984") Annotation( "PRO:DNx") "A transcriptional enhancer factor TEF-3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A transcriptional enhancer factor TEF-3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P48984") AnnotationAssertion(Annotation( "UniProtKB:P48984") "M-CAT-binding factor (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P48984") "RTEF-1 (chicken)") @@ -208686,7 +209441,7 @@ SubClassOf( ObjectSomeValuesFrom( (cytosolic phospholipase A2 (chicken)) -AnnotationAssertion(Annotation( "OMA:P49147") Annotation( "PANTHER:PTHR10728:SF13") Annotation( "PRO:DNx") "A cytosolic phospholipase A2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P49147") Annotation( "PRO:DNx") "A cytosolic phospholipase A2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P49147") AnnotationAssertion(Annotation( "UniProtKB:P49147") "cPLA2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PLA2G4A") @@ -208913,7 +209668,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein Wnt-11 (chicken)) -AnnotationAssertion(Annotation( "OMA:P49339") Annotation( "PANTHER:PTHR12027:SF7") Annotation( "PRO:DNx") "A protein Wnt-11 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P49339") Annotation( "PRO:DNx") "A protein Wnt-11 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P49339") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-WNT11") AnnotationAssertion( "protein") @@ -208972,7 +209727,7 @@ SubClassOf( ObjectSomeValuesFrom( (syndecan-4 (chicken)) -AnnotationAssertion(Annotation( "OMA:P49416") Annotation( "PANTHER:PTHR10915:SF3") Annotation( "PRO:DNx") "A syndecan-4 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P49416") Annotation( "PRO:DNx") "A syndecan-4 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P49416") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SDC4") AnnotationAssertion( "protein") @@ -209333,7 +210088,7 @@ SubClassOf( ObjectSomeValuesFrom( (ADP-ribosylation factor 5 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "An ADP-ribosylation factor 5 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P49702") Annotation( "PRO:DNx") "An ADP-ribosylation factor 5 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P49702") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ARF5") AnnotationAssertion( "protein") @@ -209386,7 +210141,7 @@ SubClassOf( ObjectSomeValuesFrom( (interferon gamma (chicken)) -AnnotationAssertion(Annotation( "OMA:P49708") Annotation( "PANTHER:PTHR11419:SF0") Annotation( "PRO:DNx") "An interferon gamma that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P49708") Annotation( "PRO:DNx") "An interferon gamma that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P49708") AnnotationAssertion(Annotation( "UniProtKB:P49708") "IFN-gamma (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-IFNG") @@ -210061,7 +210816,7 @@ SubClassOf( ObjectSomeValuesFrom( (GTP cyclohydrolase 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:P50141") Annotation( "PANTHER:PTHR11109:SF0") Annotation( "PRO:DNx") "A GTP cyclohydrolase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P50141") Annotation( "PRO:DNx") "A GTP cyclohydrolase 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P50141") AnnotationAssertion(Annotation( "UniProtKB:P50141") "GTP cyclohydrolase I (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P50141") "GTP-CH-I (chicken)") @@ -210139,7 +210894,7 @@ SubClassOf( ObjectSomeValuesFrom( (insulin gene enhancer protein ISL-1 (chicken)) -AnnotationAssertion(Annotation( "OMA:P50211") Annotation( "PANTHER:PTHR24204:SF26") Annotation( "PRO:DNx") "An insulin gene enhancer protein ISL-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P50211") Annotation( "PRO:DNx") "An insulin gene enhancer protein ISL-1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P50211") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ISL1") AnnotationAssertion(Annotation( "UniProtKB:P50211") "islet-1 (chicken)") @@ -210338,6 +211093,7 @@ AnnotationAssertion(Annotation( "Reactome:R-HSA-201573") AnnotationAssertion(Annotation(rdfs:label "PR:P50402 located_in GO:0005829") "Reactome:R-HSA-9613988") AnnotationAssertion(Annotation(rdfs:label "PR:P50402 located_in GO:0005789") "Reactome:R-HSA-9613998") +AnnotationAssertion(Annotation(rdfs:label "PR:P50402 located_in GO:0010008") "Reactome:R-HSA-9715092") AnnotationAssertion( "UniProtKB:P50402") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hEMD") AnnotationAssertion( "protein") @@ -210523,7 +211279,7 @@ SubClassOf( ObjectSomeValuesFrom( (amphiphysin (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10321:SF23") Annotation( "PRO:DNx") "An amphiphysin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P50478") Annotation( "PRO:DNx") "An amphiphysin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P50478") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-AMPH") AnnotationAssertion( "protein") @@ -210703,6 +211459,8 @@ AnnotationAssertion(Annotation(rdfs:label "PR:P50570 located_in GO:0005765") "Reactome:R-HSA-2980842") AnnotationAssertion(Annotation(rdfs:label "PR:P50570 located_in GO:0005886") "Reactome:R-HSA-2984201") AnnotationAssertion( "UniProtKB:P50570") +AnnotationAssertion(Annotation( "UniProtKB:P50570") "dynamin 2 (human)") +AnnotationAssertion(Annotation( "UniProtKB:P50570") "dynamin II (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hDNM2") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P50570") Annotation( ) "DNM2") @@ -211137,7 +211895,7 @@ SubClassOf( ObjectSomeValuesFrom( (cathelicidin antimicrobial peptide (mouse)) -AnnotationAssertion(Annotation( "OMA:P51437") Annotation( "PANTHER:PTHR10206:SF0") Annotation( "PRO:DNx") "A cathelicidin antimicrobial peptide that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P51437") Annotation( "PRO:DNx") "A cathelicidin antimicrobial peptide that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P51437") AnnotationAssertion(Annotation( "UniProtKB:P51437") "CLP (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P51437") "cathelin-like protein (mouse)") @@ -211437,6 +212195,23 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (ciliary neurotrophic factor (mouse)) + +AnnotationAssertion(Annotation( "OMA:P51642") Annotation( "PRO:DNx") "A ciliary neurotrophic factor that is encoded in the genome of mouse.") +AnnotationAssertion( "UniProtKB:P51642") +AnnotationAssertion(Annotation( "UniProtKB:P51642") "CNTF (mouse)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCNTF") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:P51642") Annotation( ) "Cntf") +AnnotationAssertion( "PR:P51642") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "ciliary neurotrophic factor (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (succinate-semialdehyde dehydrogenase, mitochondrial (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P51649") "A succinate-semialdehyde dehydrogenase, mitochondrial that is encoded in the genome of human.") @@ -212091,7 +212866,7 @@ SubClassOf( ObjectSomeValuesFrom( (fibromodulin (chicken)) -AnnotationAssertion(Annotation( "OMA:P51887") Annotation( "PANTHER:PTHR24371:SF109") Annotation( "PRO:DNx") "A fibromodulin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P51887") Annotation( "PRO:DNx") "A fibromodulin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P51887") AnnotationAssertion(Annotation( "UniProtKB:P51887") "FM (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P51887") "KSPG fibromodulin (chicken)") @@ -212127,7 +212902,7 @@ SubClassOf( ObjectSomeValuesFrom( (lumican (chicken)) -AnnotationAssertion(Annotation( "OMA:P51890") Annotation( "PANTHER:PTHR24371:SF110") Annotation( "PRO:DNx") "A lumican that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P51890") Annotation( "PRO:DNx") "A lumican that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P51890") AnnotationAssertion(Annotation( "UniProtKB:P51890") "KSPG lumican (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-LUM") @@ -212268,9 +213043,28 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (eukaryotic translation initiation factor 1 (chicken)) + +AnnotationAssertion(Annotation( "OMA:P51971") Annotation( "PRO:DNx") "A eukaryotic translation initiation factor 1 that is encoded in the genome of chicken.") +AnnotationAssertion( "UniProtKB:P51971") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-EIF1") +AnnotationAssertion(Annotation( "UniProtKB:P51971") "eIF1 (chicken)") +AnnotationAssertion(Annotation( "UniProtKB:P51971") "protein translation factor SUI1 homolog (chicken)") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:P51971") Annotation( ) "EIF1") +AnnotationAssertion(Annotation( "UniProtKB:P51971") Annotation( ) "SUI1") +AnnotationAssertion( "PR:P51971") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "eukaryotic translation initiation factor 1 (chicken)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (protein max (chicken)) -AnnotationAssertion(Annotation( "OMA:P52162") Annotation( "PRO:DNx") "A protein max that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:CNA") "A protein max that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P52162") AnnotationAssertion(Annotation( "UniProtKB:P52162") "Myc-associated factor X (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MAX") @@ -212283,7 +213077,7 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (thiosulfate sulfurtransferase (mouse)) @@ -212414,6 +213208,7 @@ SubClassOf( ObjectSomeValuesFrom( (Rap1 GTPase-GDP dissociation stimulator 1 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P52306") "A Rap1 GTPase-GDP dissociation stimulator 1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:P52306 located_in GO:0005741") "Reactome:R-HSA-9693756") AnnotationAssertion( "UniProtKB:P52306") AnnotationAssertion(Annotation( "UniProtKB:P52306") "SMG GDS protein (human)") AnnotationAssertion(Annotation( "UniProtKB:P52306") "SMG P21 stimulatory GDP/GTP exchange protein (human)") @@ -212453,7 +213248,7 @@ SubClassOf( ObjectSomeValuesFrom( (DNA-directed RNA polymerases I and III subunit RPAC1 (mouse)) -AnnotationAssertion(Annotation( "OMA:P52432") Annotation( "PANTHER:PTHR11800:SF13") Annotation( "PRO:DNx") "A DNA-directed RNA polymerases I and III subunit RPAC1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P52432") Annotation( "PRO:DNx") "A DNA-directed RNA polymerases I and III subunit RPAC1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P52432") AnnotationAssertion(Annotation( "UniProtKB:P52432") "AC40 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P52432") "DNA-directed RNA polymerase I subunit C (mouse)") @@ -212819,22 +213614,22 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L12, mitochondrial (human)) +# Class: (large ribosomal subunit protein bL12m (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P52815") "A 39S ribosomal protein L12, mitochondrial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P52815") "A large ribosomal subunit protein bL12m that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P52815") +AnnotationAssertion(Annotation( "UniProtKB:P52815") "39S ribosomal protein L12, mitochondrial (human)") AnnotationAssertion(Annotation( "UniProtKB:P52815") "5c5-2 (human)") AnnotationAssertion(Annotation( "UniProtKB:P52815") "L12mt (human)") AnnotationAssertion(Annotation( "UniProtKB:P52815") "MRP-L12 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRPL12") -AnnotationAssertion(Annotation( "UniProtKB:P52815") "mitochondrial large ribosomal subunit protein bL12m (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P52815") Annotation( ) "MRPL12") AnnotationAssertion(Annotation( "UniProtKB:P52815") Annotation( ) "MRPL7") AnnotationAssertion(Annotation( "UniProtKB:P52815") Annotation( ) "RPML12") AnnotationAssertion( "PR:P52815") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L12, mitochondrial (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL12m (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -213182,7 +213977,7 @@ SubClassOf( ObjectSomeValuesFrom( (LIM/homeobox protein Lhx3 (chicken)) -AnnotationAssertion(Annotation( "OMA:P53412") Annotation( "PANTHER:PTHR25901:SF37") Annotation( "PRO:DNx") "A LIM/homeobox protein Lhx3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A LIM/homeobox protein Lhx3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P53412") AnnotationAssertion(Annotation( "UniProtKB:P53412") "LIM homeobox protein 3 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-LHX3") @@ -213644,7 +214439,7 @@ SubClassOf( ObjectSomeValuesFrom( (beta-tectorin (chicken)) -AnnotationAssertion(Annotation( "OMA:P54097") Annotation( "PANTHER:PTHR22962:SF8") Annotation( "PRO:DNx") "A beta-tectorin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P54097") Annotation( "PRO:DNx") "A beta-tectorin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P54097") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TECTB") AnnotationAssertion( "protein") @@ -214600,6 +215395,7 @@ SubClassOf( ObjectSomeValuesFrom( (GTP-binding protein GEM (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P55040") "A GTP-binding protein GEM that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:P55040 located_in GO:0005886") "Reactome:R-HSA-9769962") AnnotationAssertion( "UniProtKB:P55040") AnnotationAssertion(Annotation( "UniProtKB:P55040") "GTP-binding mitogen-induced T-cell protein (human)") AnnotationAssertion(Annotation( "UniProtKB:P55040") "RAS-like protein KIR (human)") @@ -214758,6 +215554,8 @@ AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hVCP") AnnotationAssertion(Annotation( "UniProtKB:P55072") "valosin-containing protein (human)") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:P55072") Annotation( ) "HEL-220") +AnnotationAssertion(Annotation( "UniProtKB:P55072") Annotation( ) "HEL-S-70") AnnotationAssertion(Annotation( "UniProtKB:P55072") Annotation( ) "VCP") AnnotationAssertion( "PR:P55072") AnnotationAssertion(rdfs:comment "Category=organism-gene.") @@ -215018,7 +215816,7 @@ SubClassOf( ObjectSomeValuesFrom( (beta-crystallin B3 (chicken)) -AnnotationAssertion(Annotation( "OMA:P55165") Annotation( "PANTHER:PTHR11818:SF13") Annotation( "PRO:DNx") "A beta-crystallin B3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P55165") Annotation( "PRO:DNx") "A beta-crystallin B3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P55165") AnnotationAssertion(Annotation( "UniProtKB:P55165") "beta-B3 crystallin (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CRYBB3") @@ -215270,7 +216068,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:P55735") "A protein SEC13 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P55735") -AnnotationAssertion(Annotation( "UniProtKB:P55735") "GATOR complex protein SEC13 (human)") +AnnotationAssertion(Annotation( "UniProtKB:P55735") "GATOR2 complex protein SEC13 (human)") AnnotationAssertion(Annotation( "UniProtKB:P55735") "SEC13-like protein 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:P55735") "SEC13-related protein (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSEC13") @@ -215969,7 +216767,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P56528") "CD38 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P56528") "I-19 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P56528") "NIM-R5 antigen (mouse)") -AnnotationAssertion(Annotation( "UniProtKB:P56528") "cADPr hydrolase 1 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:P56528") "cADPR hydrolase 1 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P56528") "cyclic ADP-ribose hydrolase 1 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCD38") AnnotationAssertion( "protein") @@ -216734,6 +217532,7 @@ SubClassOf( ObjectSomeValuesFrom( (prestin (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P58743") "A prestin that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:P58743 located_in GO:0005886") "Reactome:R-HSA-5216108") AnnotationAssertion( "UniProtKB:P58743") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSLC26A5") AnnotationAssertion(Annotation( "UniProtKB:P58743") "solute carrier family 26 member 5 (human)") @@ -216774,8 +217573,10 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:P58801") Annotation( "PRO:DNx") "A receptor-interacting serine/threonine-protein kinase 2 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P58801") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRIPK2") +AnnotationAssertion(Annotation( "UniProtKB:P58801") "receptor-interacting protein 2 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P58801") "tyrosine-protein kinase RIPK2 (mouse)") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:P58801") Annotation( ) "Rip2") AnnotationAssertion(Annotation( "UniProtKB:P58801") Annotation( ) "Ripk2") AnnotationAssertion( "PR:P58801") AnnotationAssertion(rdfs:comment "Category=organism-gene.") @@ -217473,32 +218274,33 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S20 (human)) +# Class: (small ribosomal subunit protein uS10 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P60866") "A 40S ribosomal protein S20 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P60866") "A eukaryotic-type small ribosomal subunit protein uS10 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P60866") +AnnotationAssertion(Annotation( "UniProtKB:P60866") "40S ribosomal protein S20 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRPS20") -AnnotationAssertion(Annotation( "UniProtKB:P60866") "small ribosomal subunit protein uS10 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P60866") Annotation( ) "RPS20") AnnotationAssertion( "PR:P60866") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S20 (human)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein uS10 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S20 (mouse)) +# Class: (small ribosomal subunit protein uS10 (mouse)) -AnnotationAssertion(Annotation( "OMA:P60867") Annotation( "PRO:DNx") "A 40S ribosomal protein S20 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P60867") Annotation( "PRO:DNx") "A eukaryotic-type small ribosomal subunit protein uS10 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P60867") +AnnotationAssertion(Annotation( "UniProtKB:P60867") "40S ribosomal protein S20 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRPS20") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P60867") Annotation( ) "Rps20") AnnotationAssertion( "PR:P60867") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S20 (mouse)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein uS10 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -218226,13 +219028,13 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S3a (human)) +# Class: (small ribosomal subunit protein eS1 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P61247") "A 40S ribosomal protein S3a that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P61247") "A small ribosomal subunit protein eS1 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P61247") +AnnotationAssertion(Annotation( "UniProtKB:P61247") "40S ribosomal protein S3a (human)") AnnotationAssertion(Annotation( "UniProtKB:P61247") "Fte-1 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRPS3A") -AnnotationAssertion(Annotation( "UniProtKB:P61247") "small ribosomal subunit protein eS1 (human)") AnnotationAssertion(Annotation( "UniProtKB:P61247") "v-fos transformation effector protein (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P61247") Annotation( ) "FTE1") @@ -218240,7 +219042,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P61247") Annotation( ) "RPS3A") AnnotationAssertion( "PR:P61247") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S3a (human)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS1 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -218887,7 +219689,6 @@ SubClassOf( ObjectSomeValuesFrom( (WD repeat-containing protein 5 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P61964") "A WD repeat-containing protein 5 that is encoded in the genome of human.") -AnnotationAssertion(Annotation(rdfs:label "PR:P61964 located_in GO:0005654") "Reactome:R-HSA-1629838") AnnotationAssertion( "UniProtKB:P61964") AnnotationAssertion(Annotation( "UniProtKB:P61964") "BMP2-induced 3-kb gene protein (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hWDR5") @@ -219314,33 +220115,34 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S14 (human)) +# Class: (small ribosomal subunit protein uS11 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P62263") "A 40S ribosomal protein S14 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P62263") "A eukaryotic-type small ribosomal subunit protein uS11 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P62263") +AnnotationAssertion(Annotation( "UniProtKB:P62263") "40S ribosomal protein S14 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRPS14") -AnnotationAssertion(Annotation( "UniProtKB:P62263") "small ribosomal subunit protein uS11 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P62263") Annotation( ) "PRO2640") AnnotationAssertion(Annotation( "UniProtKB:P62263") Annotation( ) "RPS14") AnnotationAssertion( "PR:P62263") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S14 (human)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein uS11 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S14 (mouse)) +# Class: (small ribosomal subunit protein uS11 (mouse)) -AnnotationAssertion(Annotation( "OMA:P62264") Annotation( "PRO:DNx") "A 40S ribosomal protein S14 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P62264") Annotation( "PRO:DNx") "A eukaryotic-type small ribosomal subunit protein uS11 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P62264") +AnnotationAssertion(Annotation( "UniProtKB:P62264") "40S ribosomal protein S14 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRPS14") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P62264") Annotation( ) "Rps14") AnnotationAssertion( "PR:P62264") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S14 (mouse)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein uS11 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -219349,7 +220151,7 @@ SubClassOf( ObjectSomeValuesFrom( (small nuclear ribonucleoprotein E (chicken)) -AnnotationAssertion(Annotation( "OMA:P62303") Annotation( "PANTHER:PTHR11193:SF0") Annotation( "PRO:DNx") "A small nuclear ribonucleoprotein E that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P62303") Annotation( "PRO:DNx") "A small nuclear ribonucleoprotein E that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P62303") AnnotationAssertion(Annotation( "UniProtKB:P62303") "Sm protein E (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P62303") "Sm-E (chicken)") @@ -219754,38 +220556,40 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S4, X isoform (human)) +# Class: (small ribosomal subunit protein eS4, X isoform (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P62701") "A 40S ribosomal protein S4, X isoform that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P62701") "A small ribosomal subunit protein eS4, X isoform that is encoded in the genome of human.") AnnotationAssertion(Annotation( "UniProtKB:P62701") "small ribosomal subunit protein eS4 (human)") AnnotationAssertion( "UniProtKB:P62701") AnnotationAssertion(Annotation( "UniProtKB:P62701") "SCR10 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRPS4X") AnnotationAssertion(Annotation( "UniProtKB:P62701") "single copy abundant mRNA protein (human)") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:P62701") "40S ribosomal protein S4 (human)") AnnotationAssertion(Annotation( "UniProtKB:P62701") Annotation( ) "CCG2") AnnotationAssertion(Annotation( "UniProtKB:P62701") Annotation( ) "RPS4") AnnotationAssertion(Annotation( "UniProtKB:P62701") Annotation( ) "RPS4X") AnnotationAssertion(Annotation( "UniProtKB:P62701") Annotation( ) "SCAR") AnnotationAssertion( "PR:P62701") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S4, X isoform (human)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS4, X isoform (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S4, X isoform (mouse)) +# Class: (small ribosomal subunit protein eS4 (mouse)) -AnnotationAssertion(Annotation( "OMA:P62702") Annotation( "PRO:DNx") "A 40S ribosomal protein S4, X isoform that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P62702") Annotation( "PRO:DNx") "A small ribosomal subunit protein eS4, X isoform that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P62702") +AnnotationAssertion(Annotation( "UniProtKB:P62702") "40S ribosomal protein S4, X isoform (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRPS4X") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P62702") Annotation( ) "Rps4") AnnotationAssertion(Annotation( "UniProtKB:P62702") Annotation( ) "Rps4x") AnnotationAssertion( "PR:P62702") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S4, X isoform (mouse)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS4 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -220203,85 +221007,87 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S25 (human)) +# Class: (small ribosomal subunit protein eS25 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P62851") "A 40S ribosomal protein S25 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P62851") "A small ribosomal subunit protein eS25 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:P62851 located_in GO:0005654") "Reactome:R-HSA-6798707") AnnotationAssertion(Annotation(rdfs:label "PR:P62851 located_in GO:0005829") "Reactome:R-HSA-72357") AnnotationAssertion( "UniProtKB:P62851") +AnnotationAssertion(Annotation( "UniProtKB:P62851") "40S ribosomal protein S25 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRPS25") -AnnotationAssertion(Annotation( "UniProtKB:P62851") "small ribosomal subunit protein eS25 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P62851") Annotation( ) "RPS25") AnnotationAssertion( "PR:P62851") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S25 (human)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS25 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S25 (mouse)) +# Class: (small ribosomal subunit protein eS25 (mouse)) -AnnotationAssertion(Annotation( "OMA:P62852") Annotation( "PRO:DNx") "A 40S ribosomal protein S25 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P62852") Annotation( "PRO:DNx") "A small ribosomal subunit protein eS25 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P62852") +AnnotationAssertion(Annotation( "UniProtKB:P62852") "40S ribosomal protein S25 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRPS25") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P62852") Annotation( ) "Rps25") AnnotationAssertion( "PR:P62852") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S25 (mouse)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS25 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L30 (human)) +# Class: (large ribosomal subunit protein eL30 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P62888") "A 60S ribosomal protein L30 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P62888") "A large ribosomal subunit protein eL30 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:P62888 located_in GO:0005829") "Reactome:R-HSA-72452") AnnotationAssertion( "UniProtKB:P62888") +AnnotationAssertion(Annotation( "UniProtKB:P62888") "60S ribosomal protein L30 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRPL30") -AnnotationAssertion(Annotation( "UniProtKB:P62888") "large ribosomal subunit protein eL30 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P62888") Annotation( ) "RPL30") AnnotationAssertion( "PR:P62888") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L30 (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein eL30 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L30 (mouse)) +# Class: (large ribosomal subunit protein eL30 (mouse)) -AnnotationAssertion(Annotation( "OMA:P62889") Annotation( "PRO:DNx") "A 60S ribosomal protein L30 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P62889") Annotation( "PRO:DNx") "A large ribosomal subunit protein eL30 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P62889") +AnnotationAssertion(Annotation( "UniProtKB:P62889") "60S ribosomal protein L30 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRPL30") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P62889") Annotation( ) "Rpl30") AnnotationAssertion( "PR:P62889") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L30 (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein eL30 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L11 (human)) +# Class: (large ribosomal subunit protein uL5 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P62913") "A 60S ribosomal protein L11 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P62913") "A eukaryotic-type large ribosomal subunit protein uL5 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P62913") +AnnotationAssertion(Annotation( "UniProtKB:P62913") "60S ribosomal protein L11 (human)") AnnotationAssertion(Annotation( "UniProtKB:P62913") "CLL-associated antigen KW-12 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRPL11") -AnnotationAssertion(Annotation( "UniProtKB:P62913") "large ribosomal subunit protein uL5 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P62913") Annotation( ) "RPL11") AnnotationAssertion( "PR:P62913") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L11 (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL5 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -220377,27 +221183,29 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (ubiquitin-40S ribosomal protein S27a (human)) +# Class: (ubiquitin-ribosomal protein eS31 fusion protein (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P62979") "A ubiquitin-40S ribosomal protein S27a that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P62979") "A ubiquitin-ribosomal protein eS31 fusion protein that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:P62979 located_in GO:0005829") "Reactome:R-HSA-8853524") AnnotationAssertion( "UniProtKB:P62979") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRPS27A") AnnotationAssertion(Annotation( "UniProtKB:P62979") "ubiquitin carboxyl extension protein 80 (human)") +AnnotationAssertion(Annotation( "PRO:DAN") "ubiquitin-40S ribosomal protein S27a (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P62979") Annotation( ) "RPS27A") AnnotationAssertion(Annotation( "UniProtKB:P62979") Annotation( ) "UBA80") AnnotationAssertion(Annotation( "UniProtKB:P62979") Annotation( ) "UBCEP1") AnnotationAssertion( "PR:P62979") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "ubiquitin-40S ribosomal protein S27a (human)") +AnnotationAssertion(rdfs:label "ubiquitin-ribosomal protein eS31 fusion protein (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (ubiquitin-40S ribosomal protein S27a (mouse)) +# Class: (ubiquitin-ribosomal protein eS31 fusion protein (mouse)) -AnnotationAssertion(Annotation( "OMA:P62983") Annotation( "PRO:DNx") "A ubiquitin-40S ribosomal protein S27a that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P62983") Annotation( "PRO:DNx") "A ubiquitin-ribosomal protein eS31 fusion protein that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P62983") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRPS27A") AnnotationAssertion(Annotation( "UniProtKB:P62983") "ubiquitin carboxyl extension protein 80 (mouse)") @@ -220407,16 +221215,16 @@ AnnotationAssertion(Annotation( "UniProtKB:P62983") Annotation( ) "Ubcep1") AnnotationAssertion( "PR:P62983") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "ubiquitin-40S ribosomal protein S27a (mouse)") +AnnotationAssertion(rdfs:label "ubiquitin-ribosomal protein eS31 fusion protein (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (ubiquitin-60S ribosomal protein L40 (mouse)) +# Class: (ubiquitin-ribosomal protein eL40 fusion protein (mouse)) -AnnotationAssertion(Annotation( "OMA:P62984") Annotation( "PRO:DNx") "A ubiquitin-60S ribosomal protein L40 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P62984") Annotation( "PRO:DNx") "A ubiquitin-ribosomal protein eL40 fusion protein that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P62984") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mUBA52") AnnotationAssertion(Annotation( "UniProtKB:P62984") "ubiquitin A-52 residue ribosomal protein fusion product 1 (mouse)") @@ -220425,16 +221233,16 @@ AnnotationAssertion(Annotation( "UniProtKB:P62984") Annotation( ) "Ubcep2") AnnotationAssertion( "PR:P62984") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "ubiquitin-60S ribosomal protein L40 (mouse)") +AnnotationAssertion(rdfs:label "ubiquitin-ribosomal protein eL40 fusion protein (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (ubiquitin-60S ribosomal protein L40 (human)) +# Class: (ubiquitin-ribosomal protein eL40 fusion protein (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P62987") "A ubiquitin-60S ribosomal protein L40 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P62987") "A ubiquitin-ribosomal protein eL40 fusion protein that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:P62987 located_in GO:0005829") "Reactome:R-HSA-8853517") AnnotationAssertion( "UniProtKB:P62987") AnnotationAssertion(Annotation( "UniProtKB:P62987") "CEP52 (human)") @@ -220445,7 +221253,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P62987") Annotation( ) "UBCEP2") AnnotationAssertion( "PR:P62987") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "ubiquitin-60S ribosomal protein L40 (human)") +AnnotationAssertion(rdfs:label "ubiquitin-ribosomal protein eL40 fusion protein (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -220570,10 +221378,11 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:P63013") Annotation( "PRO:DNx") "A paired mesoderm homeobox protein 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P63013") +AnnotationAssertion(Annotation( "UniProtKB:P63013") "MHox (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P63013") "PRX-1 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P63013") "homeobox protein K-2 (mouse)") -AnnotationAssertion(Annotation( "UniProtKB:P63013") "homeobox protein mHox (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mPRRX1") +AnnotationAssertion(Annotation( "UniProtKB:P63013") "muscle homeobox protein (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P63013") "paired-related homeobox protein 1 (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P63013") Annotation( ) "Pmx") @@ -220913,6 +221722,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P63146") "ubiquitin-protein ligase B (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P63146") Annotation( ) "RAD6B") +AnnotationAssertion(Annotation( "UniProtKB:P63146") Annotation( ) "UBCH1") AnnotationAssertion(Annotation( "UniProtKB:P63146") Annotation( ) "UBE2B") AnnotationAssertion( "PR:P63146") AnnotationAssertion(rdfs:comment "Category=organism-gene.") @@ -221020,17 +221830,17 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L38 (human)) +# Class: (large ribosomal subunit protein eL38 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P63173") "A 60S ribosomal protein L38 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P63173") "A large ribosomal subunit protein eL38 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P63173") +AnnotationAssertion(Annotation( "UniProtKB:P63173") "60S ribosomal protein L38 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRPL38") -AnnotationAssertion(Annotation( "UniProtKB:P63173") "large ribosomal subunit protein eL38 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P63173") Annotation( ) "RPL38") AnnotationAssertion( "PR:P63173") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L38 (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein eL38 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -221133,9 +221943,9 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (receptor of activated protein C kinase 1 (human)) +# Class: (small ribosomal subunit protein RACK1 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P63244") "A receptor of activated protein C kinase 1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P63244") "A small ribosomal subunit protein RACK1 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:P63244") AnnotationAssertion(Annotation( "UniProtKB:P63244") "cell proliferation-inducing gene 21 protein (human)") AnnotationAssertion(Annotation( "UniProtKB:P63244") "guanine nucleotide-binding protein subunit beta-2-like 1 (human)") @@ -221143,7 +221953,7 @@ AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRACK1") AnnotationAssertion(Annotation( "UniProtKB:P63244") "human lung cancer oncogene 7 protein") AnnotationAssertion(Annotation( "UniProtKB:P63244") "receptor for activated C kinase (human)") -AnnotationAssertion(Annotation( "UniProtKB:P63244") "small ribosomal subunit protein RACK1 (human)") +AnnotationAssertion(Annotation( "UniProtKB:P63244") "receptor of activated protein C kinase 1 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P63244") Annotation( ) "GNB2L1") AnnotationAssertion(Annotation( "UniProtKB:P63244") Annotation( ) "HLC7") @@ -221151,26 +221961,27 @@ AnnotationAssertion(Annotation( "UniProtKB:P63244") Annotation( ) "RACK1") AnnotationAssertion( "PR:P63244") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "receptor of activated protein C kinase 1 (human)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein RACK1 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (receptor of activated protein C kinase 1 (chicken)) +# Class: (small ribosomal subunit protein RACK1 (chicken)) -AnnotationAssertion(Annotation( "OMA:P63247") Annotation( "PANTHER:PTHR19868:SF0") Annotation( "PRO:DNx") "A receptor of activated protein C kinase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P63247") Annotation( "PRO:DNx") "A small ribosomal subunit protein RACK1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P63247") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RACK1") AnnotationAssertion(Annotation( "UniProtKB:P63247") "guanine nucleotide-binding protein subunit beta-like protein 12.3 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P63247") "receptor for activated C kinase (chicken)") +AnnotationAssertion(Annotation( "UniProtKB:P63247") "receptor of activated protein C kinase 1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P63247") "receptor of activated protein kinase C 1 (chicken)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P63247") Annotation( ) "GNB2L1") AnnotationAssertion(Annotation( "UniProtKB:P63247") Annotation( ) "RACK1") AnnotationAssertion( "PR:P63247") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "receptor of activated protein C kinase 1 (chicken)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein RACK1 (chicken)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -221251,16 +222062,17 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S12 (mouse)) +# Class: (small ribosomal subunit protein eS12 (mouse)) -AnnotationAssertion(Annotation( "OMA:P63323") Annotation( "PRO:DNx") "A 40S ribosomal protein S12 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P63323") Annotation( "PRO:DNx") "A small ribosomal subunit protein eS12 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P63323") +AnnotationAssertion(Annotation( "UniProtKB:P63323") "40S ribosomal protein S12 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRPS12") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P63323") Annotation( ) "Rps12") AnnotationAssertion( "PR:P63323") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S12 (mouse)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS12 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -221333,16 +222145,17 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L30 (chicken)) +# Class: (large ribosomal subunit protein eL30 (chicken)) -AnnotationAssertion(Annotation( "OMA:P67883") Annotation( "PANTHER:PTHR11449:SF1") Annotation( "PRO:DNx") "A 60S ribosomal protein L30 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P67883") Annotation( "PRO:DNx") "A large ribosomal subunit protein eL30 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P67883") +AnnotationAssertion(Annotation( "UniProtKB:P67883") "60S ribosomal protein L30 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RPL30") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P67883") Annotation( ) "RPL30") AnnotationAssertion( "PR:P67883") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L30 (chicken)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein eL30 (chicken)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -221351,7 +222164,7 @@ SubClassOf( ObjectSomeValuesFrom( (vascular endothelial growth factor A (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR12025:SF5") Annotation( "PRO:DNx") "A vascular endothelial growth factor A that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P67964") Annotation( "PRO:DNx") "A vascular endothelial growth factor A, long form that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P67964") AnnotationAssertion(Annotation( "UniProtKB:P67964") "VEGF-A (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P67964") "VPF (chicken)") @@ -221385,15 +222198,16 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (receptor of activated protein C kinase 1 (mouse)) +# Class: (small ribosomal subunit protein RACK1 (mouse)) -AnnotationAssertion(Annotation( "OMA:P68040") Annotation( "PRO:DNx") "A receptor of activated protein C kinase 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P68040") Annotation( "PRO:DNx") "A small ribosomal subunit protein RACK1 that is encoded in the genome of mouse.") AnnotationAssertion(Annotation( "UniProtKB:P68040") "p205 (mouse)") AnnotationAssertion( "UniProtKB:P68040") AnnotationAssertion(Annotation( "UniProtKB:P68040") "12-3 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P68040") "guanine nucleotide-binding protein subunit beta-2-like 1 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRACK1") AnnotationAssertion(Annotation( "UniProtKB:P68040") "receptor for activated C kinase (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:P68040") "receptor of activated protein C kinase 1 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P68040") "receptor of activated protein kinase C 1 (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P68040") Annotation( ) "Gnb2-rs1") @@ -221401,7 +222215,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P68040") Annotation( ) "Rack1") AnnotationAssertion( "PR:P68040") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "receptor of activated protein C kinase 1 (mouse)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein RACK1 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -221484,7 +222298,7 @@ SubClassOf( ObjectSomeValuesFrom( (pro-glucagon (chicken)) -AnnotationAssertion(Annotation( "OMA:P68259") Annotation( "PANTHER:PTHR11418:SF0") Annotation( "PRO:DNx") "A pro-glucagon that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P68259") Annotation( "PRO:DNx") "A pro-glucagon that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P68259") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-GCG") AnnotationAssertion( "protein") @@ -221500,7 +222314,7 @@ SubClassOf( ObjectSomeValuesFrom( (thyroid hormone receptor beta (chicken)) -AnnotationAssertion(Annotation( "OMA:P68306") Annotation( "PANTHER:PTHR24082:SF214") Annotation( "PRO:DNx") "A thyroid hormone receptor beta that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P68306") Annotation( "PRO:DNx") "A thyroid hormone receptor beta that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P68306") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-THRB") AnnotationAssertion(Annotation( "UniProtKB:P68306") "nuclear receptor subfamily 1 group A member 2 (chicken)") @@ -222060,9 +222874,9 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (nitric oxide synthase, endothelial (mouse)) +# Class: (nitric oxide synthase 3 (mouse)) -AnnotationAssertion(Annotation( "OMA:P70313") Annotation( "PRO:DNx") "A nitric oxide synthase, endothelial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P70313") Annotation( "PRO:DNx") "A nitric oxide synthase 3 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P70313") AnnotationAssertion(Annotation( "UniProtKB:P70313") "EC-NOS (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P70313") "NOS type III (mouse)") @@ -222071,13 +222885,14 @@ AnnotationAssertion(Annotation( "UniProtKB:P70313") "eNOS (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P70313") "endothelial NOS (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mNOS3") +AnnotationAssertion(Annotation( "UniProtKB:P70313") "nitric oxide synthase, endothelial (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P70313") Annotation( ) "Ecnos") AnnotationAssertion(Annotation( "UniProtKB:P70313") Annotation( ) "Nos3") AnnotationAssertion(Annotation( "UniProtKB:P70313") "constitutive NOS (mouse)") AnnotationAssertion( "PR:P70313") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "nitric oxide synthase, endothelial (mouse)") +AnnotationAssertion(rdfs:label "nitric oxide synthase 3 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -222517,7 +223332,7 @@ AnnotationAssertion( "UniProtKB:P70441") "EBP50 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P70441") "NHERF-1 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P70441") "ezrin-radixin-moesin-binding phosphoprotein 50 (mouse)") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mSLC9A3R1") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mNHERF1") AnnotationAssertion(Annotation( "UniProtKB:P70441") "regulatory cofactor of Na(+)/H(+) exchanger (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P70441") "sodium-hydrogen exchanger regulatory factor 1 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P70441") "solute carrier family 9 isoform A3 regulatory factor 1 (mouse)") @@ -223348,7 +224163,7 @@ SubClassOf( ObjectSomeValuesFrom( (glutaredoxin-1 (chicken)) -AnnotationAssertion(Annotation( "OMA:P79764") Annotation( "PANTHER:PTHR10168:SF46") Annotation( "PRO:DNx") "A glutaredoxin-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P79764") Annotation( "PRO:DNx") "A glutaredoxin-1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P79764") AnnotationAssertion(Annotation( "UniProtKB:P79764") "TTase-1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-GLRX") @@ -223367,7 +224182,7 @@ SubClassOf( ObjectSomeValuesFrom( (translin (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10741:SF2") Annotation( "PRO:DNx") "A translin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P79769") Annotation( "PRO:DNx") "A translin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P79769") AnnotationAssertion(Annotation( "UniProtKB:P79769") "C3PO (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TSN") @@ -223383,9 +224198,9 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (ubiquitin-40S ribosomal protein S27a (chicken)) +# Class: (ubiquitin-ribosomal protein eS31 fusion protein (chicken)) -AnnotationAssertion(Annotation( "OMA:P79781") Annotation( "PRO:DNx") "A ubiquitin-40S ribosomal protein S27a that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P79781") Annotation( "PRO:DNx") "A ubiquitin-ribosomal protein eS31 fusion protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P79781") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RPS27A") AnnotationAssertion(Annotation( "UniProtKB:P79781") "ubiquitin carboxyl extension protein 80 (chicken)") @@ -223394,7 +224209,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P79781") Annotation( ) "UBA80") AnnotationAssertion( "PR:P79781") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "ubiquitin-40S ribosomal protein S27a (chicken)") +AnnotationAssertion(rdfs:label "ubiquitin-ribosomal protein eS31 fusion protein (chicken)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -223403,7 +224218,7 @@ SubClassOf( ObjectSomeValuesFrom( (guanylyl cyclase-activating protein 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:P79880") Annotation( "PANTHER:PTHR23055:SF13") Annotation( "PRO:DNx") "A guanylyl cyclase-activating protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P79880") Annotation( "PRO:DNx") "A guanylyl cyclase-activating protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P79880") AnnotationAssertion(Annotation( "UniProtKB:P79880") "GCAP 1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-GUCA1A") @@ -223422,7 +224237,7 @@ SubClassOf( ObjectSomeValuesFrom( (guanylyl cyclase-activating protein 2 (chicken)) -AnnotationAssertion(Annotation( "OMA:P79881") Annotation( "PANTHER:PTHR23055:SF11") Annotation( "PRO:DNx") "A guanylyl cyclase-activating protein 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P79881") Annotation( "PRO:DNx") "A guanylyl cyclase-activating protein 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P79881") AnnotationAssertion(Annotation( "UniProtKB:P79881") "GCAP 2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-GUCA1B") @@ -223441,7 +224256,7 @@ SubClassOf( ObjectSomeValuesFrom( (cadherin-10 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24027:SF110") Annotation( "PRO:DNx") "A cadherin-10 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P79995") Annotation( "PRO:DNx") "A cadherin-10 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P79995") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CDH10") AnnotationAssertion( "protein") @@ -223457,7 +224272,7 @@ SubClassOf( ObjectSomeValuesFrom( (parvalbumin, muscle (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11653:SF0") Annotation( "PRO:DNx") "A parvalbumin alpha that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P80026") Annotation( "PRO:DNx") "A parvalbumin alpha that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P80026") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PVALB") AnnotationAssertion( "protein") @@ -223637,7 +224452,7 @@ SubClassOf( ObjectSomeValuesFrom( (superoxide dismutase [Cu-Zn] (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10003:SF11") Annotation( "PRO:DNx") "A superoxide dismutase [Cu-Zn] that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A superoxide dismutase [Cu-Zn] that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P80566") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SOD1") AnnotationAssertion( "protein") @@ -223889,7 +224704,7 @@ SubClassOf( ObjectSomeValuesFrom( (histone deacetylase 4 (chicken)) -AnnotationAssertion(Annotation( "OMA:P83038") Annotation( "PANTHER:PTHR10625:SF21") Annotation( "PRO:DNx") "A histone deacetylase 4 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P83038") Annotation( "PRO:DNx") "A histone deacetylase 4 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P83038") AnnotationAssertion(Annotation( "UniProtKB:P83038") "HD4 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HDAC4") @@ -224198,16 +225013,17 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S12 (chicken)) +# Class: (small ribosomal subunit protein eS12 (chicken)) -AnnotationAssertion(Annotation( "OMA:P84175") Annotation( "PANTHER:PTHR11843:SF0") Annotation( "PRO:DNx") "A 40S ribosomal protein S12 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P84175") Annotation( "PRO:DNx") "A small ribosomal subunit protein eS12 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P84175") +AnnotationAssertion(Annotation( "UniProtKB:P84175") "40S ribosomal protein S12 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RPS12") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P84175") Annotation( ) "RPS12") AnnotationAssertion( "PR:P84175") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S12 (chicken)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS12 (chicken)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -224233,7 +225049,7 @@ SubClassOf( ObjectSomeValuesFrom( (bleomycin hydrolase (chicken)) -AnnotationAssertion(Annotation( "OMA:P87362") Annotation( "PANTHER:PTHR10363:SF2") Annotation( "PRO:DNx") "A bleomycin hydrolase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P87362") Annotation( "PRO:DNx") "A bleomycin hydrolase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P87362") AnnotationAssertion(Annotation( "UniProtKB:P87362") "BH (chicken)") AnnotationAssertion(Annotation( "UniProtKB:P87362") "BLM hydrolase (chicken)") @@ -224420,10 +225236,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S3a (mouse)) +# Class: (small ribosomal subunit protein eS1 (mouse)) -AnnotationAssertion(Annotation( "OMA:P97351") Annotation( "PRO:DNx") "A 40S ribosomal protein S3a that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:P97351") Annotation( "PRO:DNx") "A small ribosomal subunit protein eS1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P97351") +AnnotationAssertion(Annotation( "UniProtKB:P97351") "40S ribosomal protein S3a (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRPS3A") AnnotationAssertion(Annotation( "UniProtKB:P97351") "protein TU-11 (mouse)") AnnotationAssertion( "protein") @@ -224431,7 +225248,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P97351") Annotation( ) "Rps3a1") AnnotationAssertion( "PR:P97351") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S3a (mouse)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS1 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -226041,16 +226858,17 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S acidic ribosomal protein P2 (mouse)) +# Class: (large ribosomal subunit protein P2 (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A 60S acidic ribosomal protein P2 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A large ribosomal subunit protein P2 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:P99027") +AnnotationAssertion(Annotation( "UniProtKB:P99027") "60S acidic ribosomal protein P2 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRPLP2") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:P99027") Annotation( ) "Rplp2") AnnotationAssertion( "PR:P99027") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "60S acidic ribosomal protein P2 (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein P2 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -226530,11 +227348,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (vascular endothelial growth factor A (mouse)) +# Class: (vascular endothelial growth factor A, long form (mouse)) -AnnotationAssertion(Annotation( "OMA:Q00731") Annotation( "PRO:DNx") "A vascular endothelial growth factor A that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q00731") Annotation( "PRO:DNx") "A vascular endothelial growth factor A, long form that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q00731") -AnnotationAssertion(Annotation( "UniProtKB:Q00731") "VEGF-A (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q00731") "L-VEGF (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q00731") "VPF (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mVEGFA") AnnotationAssertion(Annotation( "UniProtKB:Q00731") "vascular permeability factor (mouse)") @@ -226543,7 +227361,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q00731") Annotation( ) "Vegfa") AnnotationAssertion( "PR:Q00731") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "vascular endothelial growth factor A (mouse)") +AnnotationAssertion(rdfs:label "vascular endothelial growth factor A, long form (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -227369,6 +228187,25 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (ciliary neurotrophic factor (chicken)) + +AnnotationAssertion(Annotation( "OMA:Q02011") Annotation( "PRO:DNx") "A ciliary neurotrophic factor that is encoded in the genome of chicken.") +AnnotationAssertion( "UniProtKB:Q02011") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CNTF") +AnnotationAssertion(Annotation( "UniProtKB:Q02011") "growth-promoting activity (chicken)") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q02011") Annotation( ) "CNF") +AnnotationAssertion(Annotation( "UniProtKB:Q02011") Annotation( ) "CNTF") +AnnotationAssertion(Annotation( "UniProtKB:Q02011") Annotation( ) "GPA") +AnnotationAssertion( "PR:Q02011") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "ciliary neurotrophic factor (chicken)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (myosin light chain 5 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q02045") "A myosin light chain 5 that is encoded in the genome of human.") @@ -227488,9 +228325,9 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (human)) +# Class: (methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q02252") "A methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q02252") "A methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q02252") AnnotationAssertion(Annotation( "UniProtKB:Q02252") "aldehyde dehydrogenase family 6 member A1 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hALDH6A1") @@ -227500,7 +228337,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q02252") Annotation( ) "MMSDH") AnnotationAssertion( "PR:Q02252") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (human)") +AnnotationAssertion(rdfs:label "methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -227822,6 +228659,7 @@ AnnotationAssertion( "PRO:DNx") Annotation( ) "hHHEX") AnnotationAssertion(Annotation( "UniProtKB:Q03014") "homeobox protein HEX (human)") AnnotationAssertion(Annotation( "UniProtKB:Q03014") "homeobox protein PRH (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q03014") "proline-rich homeodomain protein (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q03014") Annotation( ) "HEX") AnnotationAssertion(Annotation( "UniProtKB:Q03014") Annotation( ) "HHEX") @@ -228348,7 +229186,7 @@ SubClassOf( ObjectSomeValuesFrom( (zyxin (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24212:SF61") Annotation( "PRO:DNx") "A zyxin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A zyxin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q04584") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ZYX") AnnotationAssertion( "protein") @@ -228595,7 +229433,7 @@ SubClassOf( ObjectSomeValuesFrom( (nuclear factor NF-kappa-B p105 subunit (chicken)) -AnnotationAssertion(Annotation( "OMA:Q04861") Annotation( "PANTHER:PTHR24169:SF4") Annotation( "PRO:DNx") "A nuclear factor NF-kappa-B p105 subunit that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q04861") Annotation( "PRO:DNx") "A nuclear factor NF-kappa-B p105 subunit that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q04861") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-NFKB1") AnnotationAssertion(Annotation( "UniProtKB:Q04861") "nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (chicken)") @@ -228703,7 +229541,7 @@ SubClassOf( ObjectSomeValuesFrom( (serine/threonine-protein kinase B-raf (chicken)) -AnnotationAssertion(Annotation( "OMA:Q04982") Annotation( "PANTHER:PTHR23257:SF41") Annotation( "PRO:DNx") "A B-Raf proto-oncogene serine/threonine-protein kinase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A B-Raf proto-oncogene serine/threonine-protein kinase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q04982") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-BRAF") AnnotationAssertion(Annotation( "UniProtKB:Q04982") "proto-oncogene B-Raf (chicken)") @@ -228881,6 +229719,8 @@ AnnotationAssertion(Annotation(rdfs:label "PR:Q05193 located_in GO:0005886") "Reactome:R-HSA-196150") AnnotationAssertion(Annotation(rdfs:label "PR:Q05193 located_in GO:0005829") "Reactome:R-HSA-2213182") AnnotationAssertion( "UniProtKB:Q05193") +AnnotationAssertion(Annotation( "UniProtKB:Q05193") "dynamin (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q05193") "dynamin I (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hDNM1") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q05193") Annotation( ) "DNM") @@ -228929,7 +229769,7 @@ SubClassOf( ObjectSomeValuesFrom( (paired mesoderm homeobox protein 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q05437") Annotation( "PANTHER:PTHR24329:SF87") Annotation( "PRO:DNx") "A paired mesoderm homeobox protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q05437") Annotation( "PRO:DNx") "A paired mesoderm homeobox protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q05437") AnnotationAssertion(Annotation( "UniProtKB:Q05437") "GMHOX (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q05437") "PRX-1 (chicken)") @@ -228975,7 +229815,7 @@ SubClassOf( ObjectSomeValuesFrom( (hematopoietically-expressed homeobox protein HHEX (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24324:SF134") Annotation( "PRO:DNx") "A hematopoietically-expressed homeobox protein HHEX that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q05502") Annotation( "PRO:DNx") "A hematopoietically-expressed homeobox protein HHEX that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q05502") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HHEX") AnnotationAssertion(Annotation( "UniProtKB:Q05502") "homeobox protein HEX (chicken)") @@ -229553,6 +230393,7 @@ SubClassOf( ObjectSomeValuesFrom( (paired box protein Pax-8 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q06710") "A paired box protein Pax-8 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q06710 located_in GO:0005654") "Reactome:R-HSA-3968418") AnnotationAssertion( "UniProtKB:Q06710") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPAX8") AnnotationAssertion( "protein") @@ -229628,7 +230469,7 @@ SubClassOf( ObjectSomeValuesFrom( (chromodomain-helicase-DNA-binding protein 7 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10799:SF215") Annotation( "PRO:DNx") "A chromodomain-helicase-DNA-binding protein 7 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q06A37") Annotation( "PRO:DNx") "A chromodomain-helicase-DNA-binding protein 7 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q06A37") AnnotationAssertion(Annotation( "UniProtKB:Q06A37") "ATP-dependent helicase CHD7 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q06A37") "CHD-7 (chicken)") @@ -229874,7 +230715,7 @@ SubClassOf( ObjectSomeValuesFrom( (eukaryotic translation initiation factor 5A-2 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q07460") Annotation( "PANTHER:PTHR11673:SF2") Annotation( "PRO:DNx") "A eukaryotic translation initiation factor 5A-2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q07460") Annotation( "PRO:DNx") "A eukaryotic translation initiation factor 5A-2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q07460") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-EIF5A2") AnnotationAssertion(Annotation( "UniProtKB:Q07460") "eIF-5A-2 (chicken)") @@ -229914,7 +230755,7 @@ SubClassOf( ObjectSomeValuesFrom( (ephrin type-A receptor 4 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q07496") Annotation( "PANTHER:PTHR24416:SF340") Annotation( "PRO:DNx") "An ephrin type-A receptor 4 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "An ephrin type-A receptor 4 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q07496") AnnotationAssertion(Annotation( "UniProtKB:Q07496") "EK8 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q07496") "EPH-like kinase 8 (chicken)") @@ -229972,22 +230813,23 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (neutral and basic amino acid transport protein rBAT (human)) +# Class: (amino acid transporter heavy chain SLC3A1 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q07837") "A neutral and basic amino acid transport protein rBAT that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q07837") "An amino acid transporter heavy chain SLC3A1 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q07837 located_in GO:0005886") "Reactome:R-HSA-379428") AnnotationAssertion( "UniProtKB:Q07837") AnnotationAssertion(Annotation( "UniProtKB:Q07837") "D2h (human)") -AnnotationAssertion(Annotation( "UniProtKB:Q07837") "NBAT (human)") -AnnotationAssertion(Annotation( "UniProtKB:Q07837") "b(0,+)-type amino acid transport protein (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q07837") "b(0,+)-type amino acid transporter-related heavy chain (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSLC3A1") +AnnotationAssertion(Annotation( "UniProtKB:Q07837") "neutral and basic amino acid transport protein (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q07837") "rBAT (human)") AnnotationAssertion(Annotation( "UniProtKB:Q07837") "solute carrier family 3 member 1 (human)") AnnotationAssertion( "protein") -AnnotationAssertion(Annotation( "UniProtKB:Q07837") Annotation( ) "RBAT") +AnnotationAssertion(Annotation( "UniProtKB:Q07837") Annotation( ) "NBAT") AnnotationAssertion(Annotation( "UniProtKB:Q07837") Annotation( ) "SLC3A1") AnnotationAssertion( "PR:Q07837") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "neutral and basic amino acid transport protein rBAT (human)") +AnnotationAssertion(rdfs:label "amino acid transporter heavy chain SLC3A1 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -230249,7 +231091,7 @@ SubClassOf( ObjectSomeValuesFrom( (mast/stem cell growth factor receptor Kit (chicken)) -AnnotationAssertion(Annotation( "OMA:Q08156") Annotation( "PANTHER:PTHR24416:SF238") Annotation( "PRO:DNx") "A mast/stem cell growth factor receptor that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q08156") Annotation( "PRO:DNx") "A mast/stem cell growth factor receptor that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q08156") AnnotationAssertion(Annotation( "UniProtKB:Q08156") "SCFR (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-KIT") @@ -230328,19 +231170,20 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (cAMP-specific 3',5'-cyclic phosphodiesterase 4C (human)) +# Class: (3',5'-cyclic-AMP phosphodiesterase 4C (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q08493") "A cAMP-specific 3',5'-cyclic phosphodiesterase 4C that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q08493") "A 3',5'-cyclic-AMP phosphodiesterase 4C that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q08493 located_in GO:0005829") "Reactome:R-HSA-52387") AnnotationAssertion( "UniProtKB:Q08493") AnnotationAssertion(Annotation( "UniProtKB:Q08493") "PDE21 (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q08493") "cAMP-specific phosphodiesterase 4C (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPDE4C") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q08493") Annotation( ) "DPDE1") AnnotationAssertion(Annotation( "UniProtKB:Q08493") Annotation( ) "PDE4C") AnnotationAssertion( "PR:Q08493") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "cAMP-specific 3',5'-cyclic phosphodiesterase 4C (human)") +AnnotationAssertion(rdfs:label "3',5'-cyclic-AMP phosphodiesterase 4C (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -230474,7 +231317,7 @@ SubClassOf( ObjectSomeValuesFrom( (transcriptional repressor CTCF (chicken)) -AnnotationAssertion(Annotation( "OMA:Q08705") Annotation( "PANTHER:PTHR24375:SF448") Annotation( "PRO:DNx") "A transcriptional repressor CTCF that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q08705") Annotation( "PRO:DNx") "A transcriptional repressor CTCF that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q08705") AnnotationAssertion(Annotation( "UniProtKB:Q08705") "11-zinc finger protein (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q08705") "CCCTC-binding factor (chicken)") @@ -230692,7 +231535,7 @@ SubClassOf( ObjectSomeValuesFrom( (kit ligand (chicken)) -AnnotationAssertion(Annotation( "OMA:Q09108") Annotation( "PANTHER:PTHR11574:SF0") Annotation( "PRO:DNx") "A kit ligand that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q09108") Annotation( "PRO:DNx") "A kit ligand that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q09108") AnnotationAssertion(Annotation( "UniProtKB:Q09108") "Stem cell factor (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q09108") "c-Kit ligand (chicken)") @@ -231126,7 +231969,7 @@ SubClassOf( ObjectSomeValuesFrom( (integrin beta-8 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q0VBD0") Annotation( "PANTHER:PTHR10082:SF9") Annotation( "PRO:DNx") "An integrin beta-8 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q0VBD0") Annotation( "PRO:DNx") "An integrin beta-8 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q0VBD0") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mITGB8") AnnotationAssertion( "protein") @@ -231206,7 +232049,7 @@ SubClassOf( ObjectSomeValuesFrom( (copine-7 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q0VE82") Annotation( "PANTHER:PTHR10857:SF6") Annotation( "PRO:DNx") "A copine-7 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q0VE82") Annotation( "PRO:DNx") "A copine-7 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q0VE82") AnnotationAssertion(Annotation( "UniProtKB:Q0VE82") "copine VII (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCPNE7") @@ -231223,7 +232066,7 @@ SubClassOf( ObjectSomeValuesFrom( (centrosomal protein of 76 kDa (mouse)) -AnnotationAssertion(Annotation( "OMA:Q0VEJ0") Annotation( "PANTHER:PTHR20837:SF0") Annotation( "PRO:DNx") "A centrosomal protein of 76 kDa that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q0VEJ0") Annotation( "PRO:DNx") "A centrosomal protein of 76 kDa that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q0VEJ0") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCEP76") AnnotationAssertion( "protein") @@ -231255,7 +232098,7 @@ SubClassOf( ObjectSomeValuesFrom( (MAM domain-containing glycosylphosphatidylinositol anchor protein 1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR23282:SF9") Annotation( "PRO:DNx") "A MAM domain-containing glycosylphosphatidylinositol anchor protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q0WYX8") Annotation( "PRO:DNx") "A MAM domain-containing glycosylphosphatidylinositol anchor protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q0WYX8") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MDGA1") AnnotationAssertion( "protein") @@ -231267,7 +232110,6 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (fatty acid-binding protein 9 (human)) @@ -231357,6 +232199,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q10472") "A polypeptide N-acetylgalactosaminyltransferase 1 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q10472 located_in GO:0005789") "Reactome:R-HSA-8849320") AnnotationAssertion(Annotation(rdfs:label "PR:Q10472 located_in GO:0000139") "Reactome:R-HSA-913698") +AnnotationAssertion(Annotation(rdfs:label "PR:Q10472 located_in GO:0033116") "Reactome:R-HSA-9682906") AnnotationAssertion( "UniProtKB:Q10472") AnnotationAssertion(Annotation( "UniProtKB:Q10472") "GalNAc-T1 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q10472") "UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 1 (human)") @@ -231462,7 +232305,7 @@ SubClassOf( ObjectSomeValuesFrom( (angiotensin-converting enzyme (chicken)) -AnnotationAssertion(Annotation( "OMA:Q10751") Annotation( "PRO:DNx") "An angiotensin-converting enzyme that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:WCB") "An angiotensin-converting enzyme that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q10751") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ACE") AnnotationAssertion(Annotation( "UniProtKB:Q10751") "dipeptidyl carboxypeptidase I (chicken)") @@ -231718,6 +232561,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q12797") "An aspartyl/asparaginyl beta-hydroxylase that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q12797 located_in GO:0005789") "Reactome:R-HSA-5490331") +AnnotationAssertion(Annotation(rdfs:label "PR:Q12797 located_in GO:0005788") "Reactome:R-HSA-9631383") AnnotationAssertion( "UniProtKB:Q12797") AnnotationAssertion(Annotation( "UniProtKB:Q12797") "ASP beta-hydroxylase (human)") AnnotationAssertion(Annotation( "UniProtKB:Q12797") "aspartate beta-hydroxylase (human)") @@ -231920,6 +232764,8 @@ SubClassOf( ObjectSomeValuesFrom( (interleukin enhancer-binding factor 3 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q12906") "An interleukin enhancer-binding factor 3 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q12906 located_in GO:0005829") "Reactome:R-HSA-450564") +AnnotationAssertion(Annotation(rdfs:label "PR:Q12906 located_in GO:0005654") "Reactome:R-HSA-9760401") AnnotationAssertion( "UniProtKB:Q12906") AnnotationAssertion(Annotation( "UniProtKB:Q12906") "DRBP76 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q12906") "M-phase phosphoprotein 4 (human)") @@ -232086,6 +232932,7 @@ SubClassOf( ObjectSomeValuesFrom( (nuclear inhibitor of protein phosphatase 1 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q12972") "A nuclear inhibitor of protein phosphatase 1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q12972 located_in GO:0005654") "Reactome:R-HSA-9770253") AnnotationAssertion( "UniProtKB:Q12972") AnnotationAssertion(Annotation( "UniProtKB:Q12972") "NIPP-1 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPPP1R8") @@ -232392,22 +233239,22 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L28, mitochondrial (human)) +# Class: (large ribosomal subunit protein bL28m (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q13084") "A 39S ribosomal protein L28, mitochondrial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q13084") "A large ribosomal subunit protein bL28m that is encoded in the genome of human.") AnnotationAssertion(Annotation( "UniProtKB:Q13084") "L28mt (human)") AnnotationAssertion(Annotation( "UniProtKB:Q13084") "MRP-L28 (human)") AnnotationAssertion( "UniProtKB:Q13084") +AnnotationAssertion(Annotation( "UniProtKB:Q13084") "39S ribosomal protein L28, mitochondrial (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRPL28") AnnotationAssertion(Annotation( "UniProtKB:Q13084") "melanoma antigen p15 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q13084") "melanoma-associated antigen recognized by T-lymphocytes (human)") -AnnotationAssertion(Annotation( "UniProtKB:Q13084") "mitochondrial large ribosomal subunit protein bL28m (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q13084") Annotation( ) "MAAT1") AnnotationAssertion(Annotation( "UniProtKB:Q13084") Annotation( ) "MRPL28") AnnotationAssertion( "PR:Q13084") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L28, mitochondrial (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL28m (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -232460,6 +233307,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein Red (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q13123") "A protein Red that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q13123 located_in GO:0005654") "Reactome:R-HSA-9770239") AnnotationAssertion( "UniProtKB:Q13123") AnnotationAssertion(Annotation( "UniProtKB:Q13123") "IK factor (human)") AnnotationAssertion(Annotation( "UniProtKB:Q13123") "cytokine IK (human)") @@ -232642,6 +233490,27 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (syntaxin-5 (human)) + +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q13190") "A syntaxin-5 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q13190 located_in GO:0033116") "Reactome:R-HSA-5688157") +AnnotationAssertion(Annotation(rdfs:label "PR:Q13190 located_in GO:0005789") "Reactome:R-HSA-5689474") +AnnotationAssertion(Annotation(rdfs:label "PR:Q13190 located_in GO:0012507") "Reactome:R-HSA-5689838") +AnnotationAssertion(Annotation(rdfs:label "PR:Q13190 located_in GO:0000139") "Reactome:R-HSA-6807771") +AnnotationAssertion(Annotation(rdfs:label "PR:Q13190 located_in GO:0005829") "Reactome:R-HSA-9613991") +AnnotationAssertion( "UniProtKB:Q13190") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSTX5") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q13190") Annotation( ) "STX5") +AnnotationAssertion(Annotation( "UniProtKB:Q13190") Annotation( ) "STX5A") +AnnotationAssertion( "PR:Q13190") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "syntaxin-5 (human)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (myosin-binding protein H (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q13203") "A myosin-binding protein H that is encoded in the genome of human.") @@ -232864,6 +233733,7 @@ SubClassOf( ObjectSomeValuesFrom( (N-myc-interactor (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q13287") "An N-myc-interactor that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q13287 located_in GO:0005829") "Reactome:R-HSA-9731022") AnnotationAssertion( "UniProtKB:Q13287") AnnotationAssertion(Annotation( "UniProtKB:Q13287") "N-myc and STAT interactor (human)") AnnotationAssertion(Annotation( "UniProtKB:Q13287") "Nmi (human)") @@ -233090,6 +233960,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "A RING-type E3 ubiquitin-protein ligase PPIL2 that is encoded in the genome of human.") AnnotationAssertion(Annotation( "UniProtKB:Q13356") "PPIase (human)") AnnotationAssertion(Annotation(rdfs:label "PR:Q13356 located_in GO:0005796") "Reactome:R-HSA-204475") +AnnotationAssertion(Annotation(rdfs:label "PR:Q13356 located_in GO:0005654") "Reactome:R-HSA-9769562") AnnotationAssertion( "UniProtKB:Q13356") AnnotationAssertion(Annotation( "UniProtKB:Q13356") "CYC4 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q13356") "Cyp60 (human)") @@ -233226,6 +234097,8 @@ SubClassOf( ObjectSomeValuesFrom( (peptidyl-prolyl cis-trans isomerase G (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q13427") "A peptidyl-prolyl cis-trans isomerase G that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q13427 located_in GO:0005829") "Reactome:R-HSA-9728768") +AnnotationAssertion(Annotation(rdfs:label "PR:Q13427 located_in GO:0005654") "Reactome:R-HSA-9769592") AnnotationAssertion( "UniProtKB:Q13427") AnnotationAssertion(Annotation( "UniProtKB:Q13427") "CARS-Cyp (human)") AnnotationAssertion(Annotation( "UniProtKB:Q13427") "CARS-cyclophilin (human)") @@ -234105,6 +234978,7 @@ SubClassOf( ObjectSomeValuesFrom( (BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q13829") "A BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q13829 located_in GO:0005829") "Reactome:R-HSA-9696531") AnnotationAssertion( "UniProtKB:Q13829") AnnotationAssertion(Annotation( "UniProtKB:Q13829") "BTB/POZ domain-containing protein TNFAIP1 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q13829") "hBACURD2") @@ -234759,7 +235633,7 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (peptidyl-tRNA hydrolase ICT1, mitochondrial (human)) +# Class: (large ribosomal subunit protein mL62 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q14197") "An immature colon carcinoma transcript 1 protein that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q14197") @@ -234769,14 +235643,14 @@ AnnotationAssertion(Annotation( "UniProtKB:Q14197") "digestion substraction 1 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRPL58") AnnotationAssertion(Annotation( "UniProtKB:Q14197") "immature colon carcinoma transcript 1 protein (human)") -AnnotationAssertion(Annotation( "UniProtKB:Q14197") "mitochondrial large ribosomal subunit protein mL62 (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q14197") "peptidyl-tRNA hydrolase ICT1, mitochondrial (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q14197") Annotation( ) "DS1") AnnotationAssertion(Annotation( "UniProtKB:Q14197") Annotation( ) "ICT1") AnnotationAssertion(Annotation( "UniProtKB:Q14197") Annotation( ) "MRPL58") AnnotationAssertion( "PR:Q14197") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "peptidyl-tRNA hydrolase ICT1, mitochondrial (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein mL62 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -234824,19 +235698,19 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (translation initiation factor eIF-2B subunit alpha (human)) +# Class: (translation initiation factor eIF2B subunit alpha (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q14232") "A translation initiation factor eIF-2B subunit alpha that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q14232") "A translation initiation factor eIF2B subunit alpha that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q14232 located_in GO:0005829") "Reactome:R-HSA-72517") AnnotationAssertion( "UniProtKB:Q14232") -AnnotationAssertion(Annotation( "UniProtKB:Q14232") "eIF-2B GDP-GTP exchange factor subunit alpha (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q14232") "eIF2B GDP-GTP exchange factor subunit alpha (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hEIF2B1") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q14232") Annotation( ) "EIF2B1") AnnotationAssertion(Annotation( "UniProtKB:Q14232") Annotation( ) "EIF2BA") AnnotationAssertion( "PR:Q14232") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "translation initiation factor eIF-2B subunit alpha (human)") +AnnotationAssertion(rdfs:label "translation initiation factor eIF2B subunit alpha (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -235311,6 +236185,7 @@ SubClassOf( ObjectSomeValuesFrom( (ATP-dependent RNA helicase DHX8 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q14562") "An ATP-dependent RNA helicase DHX8 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q14562 located_in GO:0005654") "Reactome:R-HSA-5688092") AnnotationAssertion( "UniProtKB:Q14562") AnnotationAssertion(Annotation( "UniProtKB:Q14562") "DEAH box protein 8 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q14562") "RNA helicase HRH1 (human)") @@ -235440,6 +236315,7 @@ SubClassOf( ObjectSomeValuesFrom( (plastin-1 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q14651") "A plastin-1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q14651 located_in GO:0005829") "Reactome:R-HSA-9662403") AnnotationAssertion( "UniProtKB:Q14651") AnnotationAssertion(Annotation( "UniProtKB:Q14651") "I-plastin (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPLS1") @@ -235457,7 +236333,6 @@ SubClassOf( ObjectSomeValuesFrom( (interferon regulatory factor 3 (human)) AnnotationAssertion(Annotation( "PRO:CNA") "An interferon regulatory factor 3 that is encoded in the genome of human.") -AnnotationAssertion(Annotation(rdfs:label "PR:Q14653 located_in GO:0005829") "Reactome:R-HSA-166251") AnnotationAssertion( "UniProtKB:Q14653") AnnotationAssertion(Annotation( "UniProtKB:Q14653") "IRF-3 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hIRF3") @@ -236036,14 +236911,11 @@ SubClassOf( ObjectSomeValuesFrom( (HUWE1-associated protein modifying stress responses (mouse)) -AnnotationAssertion(Annotation( "OMA:Q14AM7") Annotation( "PRO:DNx") "A HUWE1-associated protein modifying stress responses that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q14AM7") Annotation( "PRO:DNx") "A HUWE1-associated protein modifying stress responses 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q14AM7") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mHAPSTR1") -AnnotationAssertion(Annotation( "UniProtKB:Q14AM7") "telomere attrition and p53 response 1 protein (mouse)") AnnotationAssertion( "protein") -AnnotationAssertion(Annotation( "UniProtKB:Q14AM7") Annotation( ) "1810013L24Rik") AnnotationAssertion(Annotation( "UniProtKB:Q14AM7") Annotation( ) "Hapstr1") -AnnotationAssertion(Annotation( "UniProtKB:Q14AM7") Annotation( ) "Tapr1") AnnotationAssertion( "PR:Q14AM7") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "HUWE1-associated protein modifying stress responses (mouse)") @@ -236114,7 +236986,7 @@ SubClassOf( ObjectSomeValuesFrom( (alpha-1,4-N-acetylglucosaminyltransferase (mouse)) -AnnotationAssertion(Annotation( "OMA:Q14BT6") Annotation( "PANTHER:PTHR12042:SF4") Annotation( "PRO:DNx") "An alpha-1,4-N-acetylglucosaminyltransferase that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q14BT6") Annotation( "PRO:DNx") "An alpha-1,4-N-acetylglucosaminyltransferase that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q14BT6") AnnotationAssertion(Annotation( "UniProtKB:Q14BT6") "alpha4GnT (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mA4GNT") @@ -236265,9 +237137,9 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (HUWE1-associated protein modifying stress responses (human)) +# Class: (HUWE1-associated protein modifying stress responses 1 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q14CZ0") "A HUWE1-associated protein modifying stress responses that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q14CZ0") "A HUWE1-associated protein modifying stress responses 1 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q14CZ0") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hHAPSTR1") AnnotationAssertion(Annotation( "UniProtKB:Q14CZ0") "telomere attrition and p53 response 1 protein (human)") @@ -236277,23 +237149,25 @@ AnnotationAssertion(Annotation( "UniProtKB:Q14CZ0") Annotation( ) "TAPR1") AnnotationAssertion( "PR:Q14CZ0") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "HUWE1-associated protein modifying stress responses (human)") +AnnotationAssertion(rdfs:label "HUWE1-associated protein modifying stress responses 1 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (hepatocyte cell adhesion molecule (human)) +# Class: (hepatic and glial cell adhesion molecule (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q14CZ8") "A hepatocyte cell adhesion molecule that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q14CZ8") "A hepatic and glial cell adhesion molecule that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q14CZ8") +AnnotationAssertion(Annotation( "UniProtKB:Q14CZ8") "glialCAM (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hHEPACAM") +AnnotationAssertion(Annotation( "UniProtKB:Q14CZ8") "hepatocyte cell adhesion molecule (human)") AnnotationAssertion(Annotation( "UniProtKB:Q14CZ8") "protein hepaCAM (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q14CZ8") Annotation( ) "HEPACAM") AnnotationAssertion( "PR:Q14CZ8") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "hepatocyte cell adhesion molecule (human)") +AnnotationAssertion(rdfs:label "hepatic and glial cell adhesion molecule (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -236822,18 +237696,19 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (nodal modulator 1 (human)) +# Class: (BOS complex subunit NOMO1 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q15155") "A nodal modulator 1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q15155") "A BOS complex subunit NOMO1 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q15155") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNOMO1") +AnnotationAssertion(Annotation( "UniProtKB:Q15155") "nodal modulator 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q15155") "pM5 protein (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q15155") Annotation( ) "NOMO1") AnnotationAssertion(Annotation( "UniProtKB:Q15155") Annotation( ) "PM5") AnnotationAssertion( "PR:Q15155") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "nodal modulator 1 (human)") +AnnotationAssertion(rdfs:label "BOS complex subunit NOMO1 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -238289,8 +239164,11 @@ AnnotationAssertion(Annotation( "Reactome:R-HSA-3558428") AnnotationAssertion( "UniProtKB:Q16222") AnnotationAssertion(Annotation( "UniProtKB:Q16222") "AGX (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q16222") "UDP-N-acetylgalactosamine pyrophosphorylase (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q16222") "UDP-N-acetylglucosamine pyrophosphorylase (human)") AnnotationAssertion(Annotation( "UniProtKB:Q16222") "antigen X (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hUAP1") +AnnotationAssertion(Annotation( "UniProtKB:Q16222") "protein-pyrophosphorylation enzyme (human)") AnnotationAssertion(Annotation( "UniProtKB:Q16222") "sperm-associated antigen 2 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q16222") Annotation( ) "SPAG2") @@ -238306,6 +239184,7 @@ SubClassOf( ObjectSomeValuesFrom( (nuclear factor erythroid 2-related factor 2 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q16236") "A nuclear factor erythroid 2-related factor 2 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q16236 located_in GO:0005829") "Reactome:R-HSA-201566") AnnotationAssertion( "UniProtKB:Q16236") AnnotationAssertion(Annotation( "UniProtKB:Q16236") "HEBP1 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q16236") "NF-E2-related factor 2 (human)") @@ -238354,6 +239233,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:CNA") Annotation( "UniProtKB:Q16280") "A cyclic nucleotide-gated olfactory channel that is encoded in the genome of human.") AnnotationAssertion( "DTO:01100086") +AnnotationAssertion(Annotation(rdfs:label "PR:Q16280 located_in GO:0005886") "Reactome:R-HSA-2671933") AnnotationAssertion(Annotation(rdfs:label "PR:Q16280 located_in GO:0000139") "Reactome:R-HSA-5624057") AnnotationAssertion(Annotation(rdfs:label "PR:Q16280 located_in GO:0030660") "Reactome:R-HSA-5624063") AnnotationAssertion(Annotation(rdfs:label "PR:Q16280 located_in GO:0060170") "Reactome:R-HSA-5624065") @@ -239351,6 +240231,8 @@ AnnotationAssertion( "UniProtKB:Q16822") AnnotationAssertion(Annotation( "UniProtKB:Q16822") "PEPCK-M (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPCK2") +AnnotationAssertion(Annotation( "UniProtKB:Q16822") "mtPCK2 (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q16822") "phosphoenolpyruvate carboxykinase 2, mitochondrial (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q16822") Annotation( ) "PCK2") AnnotationAssertion(Annotation( "UniProtKB:Q16822") Annotation( ) "PEPCK2") @@ -239842,7 +240724,7 @@ SubClassOf( ObjectSomeValuesFrom( (olfactomedin-like protein 3 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q25C36") Annotation( "PANTHER:PTHR23192:SF8") Annotation( "PRO:DNx") "An olfactomedin-like protein 3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q25C36") Annotation( "PRO:DNx") "An olfactomedin-like protein 3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q25C36") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-OLFML3") AnnotationAssertion(Annotation( "UniProtKB:Q25C36") "olfactomedin-noelin-tiarin factor 1 (chicken)") @@ -239860,7 +240742,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein ATP1B4 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q2HZ96") Annotation( "PANTHER:PTHR11523:SF12") Annotation( "PRO:DNx") "A protein ATP1B4 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q2HZ96") Annotation( "PRO:DNx") "A protein ATP1B4 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q2HZ96") AnnotationAssertion(Annotation( "UniProtKB:Q2HZ96") "X,K-ATPase subunit beta-m (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q2HZ96") "X/potassium-transporting ATPase subunit beta-m (chicken)") @@ -239897,7 +240779,7 @@ SubClassOf( ObjectSomeValuesFrom( (collectin-10 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q2LK95") Annotation( "PANTHER:PTHR24023:SF389") Annotation( "PRO:DNx") "A collectin-10 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A collectin-10 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q2LK95") AnnotationAssertion(Annotation( "UniProtKB:Q2LK95") "CL-1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q2LK95") "cCL-1 (chicken)") @@ -240199,17 +241081,18 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (WSC domain-containing protein 2 (human)) +# Class: (sialate:O-sulfotransferase 2 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q2TBF2") "A WSC domain-containing protein 2 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q2TBF2") "A sialate:O-sulfotransferase 2 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q2TBF2") +AnnotationAssertion(Annotation( "UniProtKB:Q2TBF2") "WSC domain-containing protein 2 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hWSCD2") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q2TBF2") Annotation( ) "KIAA0789") AnnotationAssertion(Annotation( "UniProtKB:Q2TBF2") Annotation( ) "WSCD2") AnnotationAssertion( "PR:Q2TBF2") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "WSC domain-containing protein 2 (human)") +AnnotationAssertion(rdfs:label "sialate:O-sulfotransferase 2 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -240668,7 +241551,7 @@ SubClassOf( ObjectSomeValuesFrom( (histone chaperone ASF1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q3C1E9") Annotation( "PANTHER:PTHR12040:SF0") Annotation( "PRO:DNx") "A histone chaperone ASF1A that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A histone chaperone ASF1A that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q3C1E9") AnnotationAssertion(Annotation( "UniProtKB:Q3C1E9") "anti-silencing function protein 1 homolog (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ASF1A") @@ -240938,10 +241821,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L10, mitochondrial (mouse)) +# Class: (large ribosomal subunit protein uL10m (mouse)) -AnnotationAssertion(Annotation( "OMA:Q3TBW2") Annotation( "PRO:DNx") "A 39S ribosomal protein L10, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q3TBW2") Annotation( "PRO:DNx") "A large ribosomal subunit protein uL10m that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q3TBW2") +AnnotationAssertion(Annotation( "UniProtKB:Q3TBW2") "39S ribosomal protein L10, mitochondrial (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q3TBW2") "L10mt (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q3TBW2") "MRP-L10 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMRPL10") @@ -240949,7 +241833,7 @@ AnnotationAssertion( "UniProtKB:Q3TBW2") Annotation( ) "Mrpl10") AnnotationAssertion( "PR:Q3TBW2") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L10, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL10m (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -241256,16 +242140,19 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (cotranscriptional regulator FAM172A (mouse)) +# Class: (cotranscriptional regulator ARB2A (mouse)) -AnnotationAssertion(Annotation( "OMA:Q3TNH5") Annotation( "PRO:DNx") "A cotranscriptional regulator FAM172A that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q3TNH5") Annotation( "PRO:DNx") "A cotranscriptional regulator ARB2A that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q3TNH5") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mFAM172A") +AnnotationAssertion(Annotation( "UniProtKB:Q3TNH5") "cotranscriptional regulator FAM172A (mouse)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mARB2A") +AnnotationAssertion(Annotation( "UniProtKB:Q3TNH5") "protein FAM172A (mouse)") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q3TNH5") Annotation( ) "Arb2a") AnnotationAssertion(Annotation( "UniProtKB:Q3TNH5") Annotation( ) "Fam172a") AnnotationAssertion( "PR:Q3TNH5") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "cotranscriptional regulator FAM172A (mouse)") +AnnotationAssertion(rdfs:label "cotranscriptional regulator ARB2A (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -241492,7 +242379,7 @@ SubClassOf( ObjectSomeValuesFrom( (ectonucleoside triphosphate diphosphohydrolase 6 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q3U0P5") Annotation( "PANTHER:PTHR11782:SF7") Annotation( "PRO:DNx") "An ectonucleoside triphosphate diphosphohydrolase 6 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q3U0P5") Annotation( "PRO:DNx") "An ectonucleoside triphosphate diphosphohydrolase 6 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q3U0P5") AnnotationAssertion(Annotation( "UniProtKB:Q3U0P5") "CD39 antigen-like 2 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q3U0P5") "NTPDase 6 (mouse)") @@ -241971,16 +242858,17 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (cAMP-specific 3',5'-cyclic phosphodiesterase 4C (mouse)) +# Class: (3',5'-cyclic-AMP phosphodiesterase 4C (mouse)) -AnnotationAssertion(Annotation( "OMA:Q3UEI1") Annotation( "PRO:DNx") "A cAMP-specific 3',5'-cyclic phosphodiesterase 4C that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q3UEI1") Annotation( "PRO:DNx") "A 3',5'-cyclic-AMP phosphodiesterase 4C that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q3UEI1") +AnnotationAssertion(Annotation( "UniProtKB:Q3UEI1") "cAMP-specific phosphodiesterase 4C (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mPDE4C") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q3UEI1") Annotation( ) "Pde4c") AnnotationAssertion( "PR:Q3UEI1") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "cAMP-specific 3',5'-cyclic phosphodiesterase 4C (mouse)") +AnnotationAssertion(rdfs:label "3',5'-cyclic-AMP phosphodiesterase 4C (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -242060,7 +242948,7 @@ SubClassOf( ObjectSomeValuesFrom( (plexin-D1 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q3UH93") Annotation( "PANTHER:PTHR22625:SF7") Annotation( "PRO:DNx") "A plexin-D1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q3UH93") Annotation( "PRO:DNx") "A plexin-D1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q3UH93") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mPLXND1") AnnotationAssertion( "protein") @@ -242476,19 +243364,22 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (ribosome biogenesis protein SPATA5 (mouse)) +# Class: (ATPase family gene 2 protein homolog A (mouse)) -AnnotationAssertion(Annotation( "OMA:Q3UMC0") Annotation( "PRO:DNx") "A ribosome biogenesis protein SPATA5 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q3UMC0") Annotation( "PRO:DNx") "An ATPase family gene 2 protein homolog A that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q3UMC0") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mSPATA5") +AnnotationAssertion(Annotation( "UniProtKB:Q3UMC0") "AFG2 AAA ATPase homolog A (mouse)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mAFG2A") +AnnotationAssertion(Annotation( "UniProtKB:Q3UMC0") "ribosome biogenesis protein SPATA5 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q3UMC0") "spermatogenesis-associated factor protein (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q3UMC0") "spermatogenesis-associated protein 5 (mouse)") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q3UMC0") Annotation( ) "Afg2a") AnnotationAssertion(Annotation( "UniProtKB:Q3UMC0") Annotation( ) "Spaf") AnnotationAssertion(Annotation( "UniProtKB:Q3UMC0") Annotation( ) "Spata5") AnnotationAssertion( "PR:Q3UMC0") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "ribosome biogenesis protein SPATA5 (mouse)") +AnnotationAssertion(rdfs:label "ATPase family gene 2 protein homolog A (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -242534,7 +243425,7 @@ SubClassOf( ObjectSomeValuesFrom( (ubiquitin carboxyl-terminal hydrolase 30 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q3UN04") Annotation( "PANTHER:PTHR24006:SF41") Annotation( "PRO:DNx") "A ubiquitin carboxyl-terminal hydrolase 30 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q3UN04") Annotation( "PRO:DNx") "A ubiquitin carboxyl-terminal hydrolase 30 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q3UN04") AnnotationAssertion(Annotation( "UniProtKB:Q3UN04") "Ub-specific protease 30 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q3UN04") "deubiquitinating enzyme 30 (mouse)") @@ -242960,6 +243851,26 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (sperm-associated antigen 11B (mouse)) + +AnnotationAssertion(Annotation( "OMA:Q3UW43") Annotation( "PRO:DNx") "A sperm-associated antigen 11B that is encoded in the genome of mouse.") +AnnotationAssertion( "UniProtKB:Q3UW43") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mSPAG11B") +AnnotationAssertion(Annotation( "UniProtKB:Q3UW43") "protein EP2 (mouse)") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q3UW43") Annotation( ) "Ep2") +AnnotationAssertion(Annotation( "UniProtKB:Q3UW43") Annotation( ) "Ep2c/h") +AnnotationAssertion(Annotation( "UniProtKB:Q3UW43") Annotation( ) "Spag11b") +AnnotationAssertion(Annotation( "UniProtKB:Q3UW43") Annotation( ) "Spag11c") +AnnotationAssertion( "PR:Q3UW43") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "sperm-associated antigen 11B (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (calpain-13 (mouse)) AnnotationAssertion(Annotation( "OMA:Q3UW68") Annotation( "PRO:DNx") "A calpain-13 that is encoded in the genome of mouse.") @@ -243407,7 +244318,7 @@ SubClassOf( ObjectSomeValuesFrom( (ubiquitin-associated and SH3 domain-containing protein A (mouse)) -AnnotationAssertion(Annotation( "OMA:Q3V3E1") Annotation( "PANTHER:PTHR16469:SF7") Annotation( "PRO:DNx") "A ubiquitin-associated and SH3 domain-containing protein A that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q3V3E1") Annotation( "PRO:DNx") "A ubiquitin-associated and SH3 domain-containing protein A that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q3V3E1") AnnotationAssertion(Annotation( "UniProtKB:Q3V3E1") "STS-2 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q3V3E1") "T-cell ubiquitin ligand 1 (mouse)") @@ -243532,7 +244443,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein lin-28 homolog B (chicken)) -AnnotationAssertion(Annotation( "OMA:Q45KJ4") Annotation( "PANTHER:PTHR11544:SF3") Annotation( "PRO:DNx") "A protein lin-28 homolog B that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q45KJ4") Annotation( "PRO:DNx") "A protein lin-28 homolog B that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q45KJ4") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-LIN28B") AnnotationAssertion(Annotation( "UniProtKB:Q45KJ4") "lin-28B (chicken)") @@ -243741,7 +244652,7 @@ SubClassOf( ObjectSomeValuesFrom( (SH3 and multiple ankyrin repeat domains protein 3 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q4ACU6") Annotation( "PRO:DNx") "An SH3 and multiple ankyrin repeat domains protein 3 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "An SH3 and multiple ankyrin repeat domains protein 3 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q4ACU6") AnnotationAssertion(Annotation( "UniProtKB:Q4ACU6") "ProSAP2 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q4ACU6") "SPANK-2 (mouse)") @@ -244058,7 +244969,7 @@ SubClassOf( ObjectSomeValuesFrom( (cell adhesion molecule DSCAML1 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q4VA61") Annotation( "PANTHER:PTHR10489:SF171") Annotation( "PRO:DNx") "A cell adhesion molecule DSCAML1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q4VA61") Annotation( "PRO:DNx") "A cell adhesion molecule DSCAML1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q4VA61") AnnotationAssertion(Annotation( "UniProtKB:Q4VA61") "Down syndrome cell adhesion molecule-like protein 1 homolog (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mDSCAML1") @@ -244332,6 +245243,23 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 (chicken)) + +AnnotationAssertion(Annotation( "OMA:Q50L44") Annotation( "PRO:DNx") "A leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion( "UniProtKB:Q50L44") +AnnotationAssertion(Annotation( "UniProtKB:Q50L44") "cLINGO-1 (chicken)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-LINGO1") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q50L44") Annotation( ) "LINGO1") +AnnotationAssertion( "PR:Q50L44") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 (chicken)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (TL1A (chicken)) AnnotationAssertion(Annotation( "PANTHER:PTHR11471:SF10") Annotation( "PRO:DNx") "A tumor necrosis factor ligand superfamily member 15 that is encoded in the genome of chicken.") @@ -244855,16 +245783,18 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (UPF0692 protein C19orf54 (human)) +# Class: (actin maturation protease (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q5BKX5") "A UPF0692 protein C19orf54 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q5BKX5") "An actin maturation protease that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q5BKX5") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hC19orf54") +AnnotationAssertion(Annotation( "UniProtKB:Q5BKX5") "actin aminopeptidase ACTMAP (human)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hACTMAP") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q5BKX5") Annotation( ) "ACTMAP") AnnotationAssertion(Annotation( "UniProtKB:Q5BKX5") Annotation( ) "C19orf54") AnnotationAssertion( "PR:Q5BKX5") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "UPF0692 protein C19orf54 (human)") +AnnotationAssertion(rdfs:label "actin maturation protease (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -244897,6 +245827,7 @@ SubClassOf( ObjectSomeValuesFrom( (endoribonuclease ZC3H12A (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q5D1E8") "An endoribonuclease ZC3H12A that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q5D1E8 located_in GO:0005654") "Reactome:R-HSA-9774235") AnnotationAssertion( "UniProtKB:Q5D1E8") AnnotationAssertion(Annotation( "UniProtKB:Q5D1E8") "MCP-induced protein 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q5D1E8") "MCPIP-1 (human)") @@ -245050,7 +245981,7 @@ SubClassOf( ObjectSomeValuesFrom( (PH and SEC7 domain-containing protein 1 (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A PH and SEC7 domain-containing protein 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q5DTT2") Annotation( "PRO:DNx") "A PH and SEC7 domain-containing protein 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q5DTT2") AnnotationAssertion(Annotation( "UniProtKB:Q5DTT2") "exchange factor for ADP-ribosylation factor guanine nucleotide factor 6 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q5DTT2") "exchange factor for ARF6 (mouse)") @@ -245316,7 +246247,7 @@ SubClassOf( ObjectSomeValuesFrom( (leucine-rich repeat-containing protein 59 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A leucine-rich repeat-containing protein 59 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F334") Annotation( "PRO:DNx") "A leucine-rich repeat-containing protein 59 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F334") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-LRRC59") AnnotationAssertion( "protein") @@ -245333,7 +246264,7 @@ SubClassOf( ObjectSomeValuesFrom( (acyl-coenzyme A thioesterase MBLAC2 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "An acyl-coenzyme A thioesterase MBLAC2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F336") Annotation( "PRO:DNx") "An acyl-coenzyme A thioesterase MBLAC2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F336") AnnotationAssertion(Annotation( "UniProtKB:Q5F336") "acyl-CoA thioesterase MBLAC2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MBLAC2") @@ -245354,7 +246285,7 @@ SubClassOf( ObjectSomeValuesFrom( (holocytochrome c-type synthase (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR12743:SF0") Annotation( "PRO:DNx") "A holocytochrome c-type synthase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F339") Annotation( "PRO:DNx") "A holocytochrome c-type synthase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F339") AnnotationAssertion(Annotation( "UniProtKB:Q5F339") "CCHL (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HCCS") @@ -245373,7 +246304,7 @@ SubClassOf( ObjectSomeValuesFrom( (GTPase NRas (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5F352") Annotation( "PANTHER:PTHR24070:SF125") Annotation( "PRO:DNx") "A GTPase NRas that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F352") Annotation( "PRO:DNx") "A GTPase NRas that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F352") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-NRAS") AnnotationAssertion(Annotation( "UniProtKB:Q5F352") "transforming protein N-Ras (chicken)") @@ -245415,7 +246346,7 @@ SubClassOf( ObjectSomeValuesFrom( (trafficking protein particle complex subunit 5 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A trafficking protein particle complex subunit 5 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F359") Annotation( "PRO:DNx") "A trafficking protein particle complex subunit 5 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F359") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TRAPPC5") AnnotationAssertion( "protein") @@ -245432,7 +246363,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein Jumonji (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10694:SF9") Annotation( "PRO:DNx") "A protein Jumonji that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein Jumonji that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F363") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-JARID2") AnnotationAssertion(Annotation( "UniProtKB:Q5F363") "jumonji/ARID domain-containing protein 2 (chicken)") @@ -245468,7 +246399,7 @@ SubClassOf( ObjectSomeValuesFrom( (E3 ubiquitin-protein transferase MAEA (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5F398") Annotation( "PANTHER:PTHR12170:SF2") Annotation( "PRO:DNx") "An E3 ubiquitin-protein transferase MAEA that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F398") Annotation( "PRO:DNx") "An E3 ubiquitin-protein transferase MAEA that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F398") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MAEA") AnnotationAssertion(Annotation( "UniProtKB:Q5F398") "macrophage erythroblast attacher (chicken)") @@ -245486,7 +246417,7 @@ SubClassOf( ObjectSomeValuesFrom( (charged multivesicular body protein 2b (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10476:SF5") Annotation( "PRO:DNx") "A charged multivesicular body protein 2b that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F3A2") Annotation( "PRO:DNx") "A charged multivesicular body protein 2b that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F3A2") AnnotationAssertion(Annotation( "UniProtKB:Q5F3A2") "CHMP2b (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CHMP2B") @@ -245522,7 +246453,7 @@ SubClassOf( ObjectSomeValuesFrom( (BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11145:SF8") Annotation( "PRO:DNx") "A BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F3E8") Annotation( "PRO:DNx") "A BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F3E8") AnnotationAssertion(Annotation( "UniProtKB:Q5F3E8") "BTB/POZ domain-containing protein TNFAIP1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TNFAIP1") @@ -245540,7 +246471,7 @@ SubClassOf( ObjectSomeValuesFrom( (histone H2A deubiquitinase MYSM1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR12802:SF11") Annotation( "PRO:DNx") "A deubiquitinase MYSM1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A deubiquitinase MYSM1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F3F2") AnnotationAssertion(Annotation( "UniProtKB:Q5F3F2") "2A-DUB (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5F3F2") "Myb-like, SWIRM and MPN domain-containing protein 1 (chicken)") @@ -245559,7 +246490,7 @@ SubClassOf( ObjectSomeValuesFrom( (glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5F3G7") Annotation( "PANTHER:PTHR23033:SF1") Annotation( "PRO:DNx") "A glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F3G7") AnnotationAssertion(Annotation( "UniProtKB:Q5F3G7") "C1GalT1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-C1GALT1") @@ -245581,7 +246512,7 @@ SubClassOf( ObjectSomeValuesFrom( (proteasome activator complex subunit 3 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5F3J5") Annotation( "PANTHER:PTHR10660:SF4") Annotation( "PRO:DNx") "A proteasome activator complex subunit 3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F3J5") Annotation( "PRO:DNx") "A proteasome activator complex subunit 3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F3J5") AnnotationAssertion(Annotation( "UniProtKB:Q5F3J5") "PA28g (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5F3J5") "PA28gamma (chicken)") @@ -245603,7 +246534,7 @@ SubClassOf( ObjectSomeValuesFrom( (tetratricopeptide repeat protein 27 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A tetratricopeptide repeat protein 27 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F3K0") Annotation( "PRO:DNx") "A tetratricopeptide repeat protein 27 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F3K0") AnnotationAssertion(Annotation( "UniProtKB:Q5F3K0") "TPR repeat protein 27 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TTC27") @@ -245657,7 +246588,7 @@ SubClassOf( ObjectSomeValuesFrom( (ubiquitin carboxyl-terminal hydrolase BAP1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10589:SF21") Annotation( "PRO:DNx") "A ubiquitin carboxyl-terminal hydrolase BAP1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A ubiquitin carboxyl-terminal hydrolase BAP1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F3N6") AnnotationAssertion(Annotation( "UniProtKB:Q5F3N6") "BRCA1-associated protein 1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-BAP1") @@ -245690,7 +246621,9 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (uncharacterized protein, RCJMB04_7n20 translation product (chicken)) @@ -245709,7 +246642,7 @@ SubClassOf( ObjectSomeValuesFrom( (UDP-glucose 6-dehydrogenase (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5F3T9") Annotation( "PANTHER:PTHR11374:SF3") Annotation( "PRO:DNx") "A UDP-glucose 6-dehydrogenase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F3T9") Annotation( "PRO:DNx") "A UDP-glucose 6-dehydrogenase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F3T9") AnnotationAssertion(Annotation( "UniProtKB:Q5F3T9") "UDP-Glc dehydrogenase (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5F3T9") "UDP-GlcDH (chicken)") @@ -245729,7 +246662,7 @@ SubClassOf( ObjectSomeValuesFrom( (mitogen-activated protein kinase 6 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5F3W3") Annotation( "PANTHER:PTHR24055:SF57") Annotation( "PRO:DNx") "A mitogen-activated protein kinase 6 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F3W3") Annotation( "PRO:DNx") "A mitogen-activated protein kinase 6 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F3W3") AnnotationAssertion(Annotation( "UniProtKB:Q5F3W3") "MAP kinase 6 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5F3W3") "MAPK 6 (chicken)") @@ -245765,7 +246698,7 @@ SubClassOf( ObjectSomeValuesFrom( (ubiquitin-conjugating enzyme E2 variant 2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24067:SF8") Annotation( "PRO:DNx") "A ubiquitin-conjugating enzyme E2 variant 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F3Z3") Annotation( "PRO:DNx") "A ubiquitin-conjugating enzyme E2 variant 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F3Z3") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-UBE2V2") AnnotationAssertion( "protein") @@ -245782,7 +246715,7 @@ SubClassOf( ObjectSomeValuesFrom( (DnaJ homolog subfamily B member 6 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5F3Z5") Annotation( "PANTHER:PTHR24077:SF66") Annotation( "PRO:DNx") "A DnaJ homolog subfamily B member 6 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F3Z5") Annotation( "PRO:DNx") "A DnaJ homolog subfamily B member 6 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F3Z5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-DNAJB6") AnnotationAssertion( "protein") @@ -245858,7 +246791,7 @@ SubClassOf( ObjectSomeValuesFrom( (TIMELESS-interacting protein (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR13220:SF7") Annotation( "PRO:DNx") "A TIMELESS-interacting protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F416") Annotation( "PRO:DNx") "A TIMELESS-interacting protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F416") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TIPIN") AnnotationAssertion( "protein") @@ -245875,7 +246808,7 @@ SubClassOf( ObjectSomeValuesFrom( (PRA1 family protein 3 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR12859:SF0") Annotation( "PRO:DNx") "A PRA1 family protein 3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F433") Annotation( "PRO:DNx") "A PRA1 family protein 3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F433") AnnotationAssertion(Annotation( "UniProtKB:Q5F433") "ADP-ribosylation factor-like protein 6-interacting protein 5 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5F433") "ARL-6-interacting protein 5 (chicken)") @@ -245896,7 +246829,7 @@ SubClassOf( ObjectSomeValuesFrom( (inositol-tetrakisphosphate 1-kinase (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5F480") Annotation( "PANTHER:PTHR14217:SF0") Annotation( "PRO:DNx") "An inositol-tetrakisphosphate 1-kinase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "An inositol-tetrakisphosphate 1-kinase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F480") AnnotationAssertion(Annotation( "UniProtKB:Q5F480") "Ins(1,3,4)P(3) 5/6-kinase (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ITPK1") @@ -245916,7 +246849,7 @@ SubClassOf( ObjectSomeValuesFrom( (BAG family molecular chaperone regulator 5 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5F486") Annotation( "PANTHER:PTHR12329:SF2") Annotation( "PRO:DNx") "A BAG family molecular chaperone regulator 5 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F486") Annotation( "PRO:DNx") "A BAG family molecular chaperone regulator 5 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F486") AnnotationAssertion(Annotation( "UniProtKB:Q5F486") "BAG-5 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5F486") "Bcl-2-associated athanogene 5 (chicken)") @@ -245959,7 +246892,7 @@ SubClassOf( ObjectSomeValuesFrom( (switch-associated protein 70 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5F4B2") Annotation( "PANTHER:PTHR14383:SF5") Annotation( "PRO:DNx") "A switch-associated protein 70 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5F4B2") Annotation( "PRO:DNx") "A switch-associated protein 70 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5F4B2") AnnotationAssertion(Annotation( "UniProtKB:Q5F4B2") "SWAP-70 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SWAP70") @@ -246014,7 +246947,7 @@ SubClassOf( ObjectSomeValuesFrom( (cell surface hyaluronidase (mouse)) -AnnotationAssertion(Annotation( "OMA:Q5FWI3") Annotation( "PRO:DNx") "A cell surface hyaluronidase that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q5FWI3") Annotation( "PRO:DNx") "A cell surface hyaluronidase CEMIP2 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q5FWI3") AnnotationAssertion(Annotation( "UniProtKB:Q5FWI3") "cell migration-inducing hyaluronidase 2 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCEMIP2") @@ -246364,17 +247297,18 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (nodal modulator 2 (human)) +# Class: (BOS complex subunit NOMO2 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q5JPE7") "A nodal modulator 2 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q5JPE7") "A BOS complex subunit NOMO2 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q5JPE7") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNOMO2") +AnnotationAssertion(Annotation( "UniProtKB:Q5JPE7") "nodal modulator 2 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q5JPE7") "pM5 protein 2 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q5JPE7") Annotation( ) "NOMO2") AnnotationAssertion( "PR:Q5JPE7") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "nodal modulator 2 (human)") +AnnotationAssertion(rdfs:label "BOS complex subunit NOMO2 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -247455,6 +248389,7 @@ SubClassOf( ObjectSomeValuesFrom( (MAGUK p55 subfamily member 7 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q5T2T1") "A MAGUK p55 subfamily member 7 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q5T2T1 located_in GO:0005886") "Reactome:R-HSA-9714466") AnnotationAssertion( "UniProtKB:Q5T2T1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMPP7") AnnotationAssertion( "protein") @@ -247573,20 +248508,20 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L2, mitochondrial (human)) +# Class: (large ribosomal subunit protein uL2m (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q5T653") "A 39S ribosomal protein L2, mitochondrial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q5T653") "A large ribosomal subunit protein uL2m that is encoded in the genome of human.") AnnotationAssertion(Annotation( "UniProtKB:Q5T653") "L2mt (human)") AnnotationAssertion(Annotation( "UniProtKB:Q5T653") "MRP-L2 (human)") AnnotationAssertion( "UniProtKB:Q5T653") +AnnotationAssertion(Annotation( "UniProtKB:Q5T653") "39S ribosomal protein L2, mitochondrial (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRPL2") -AnnotationAssertion(Annotation( "UniProtKB:Q5T653") "mitochondrial large ribosomal subunit protein uL2m (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q5T653") Annotation( ) "CGI-22") AnnotationAssertion(Annotation( "UniProtKB:Q5T653") Annotation( ) "MRPL2") AnnotationAssertion( "PR:Q5T653") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L2, mitochondrial (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL2m (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -247685,16 +248620,17 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (protein FAM102B (human)) +# Class: (EEIG family member 2 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q5T8I3") "A protein FAM102B that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q5T8I3") "An EEIG family member 2 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q5T8I3") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hFAM102B") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hEEIG2") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q5T8I3") Annotation( ) "EEIG2") AnnotationAssertion(Annotation( "UniProtKB:Q5T8I3") Annotation( ) "FAM102B") AnnotationAssertion( "PR:Q5T8I3") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "protein FAM102B (human)") +AnnotationAssertion(rdfs:label "EEIG family member 2 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -248197,6 +249133,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q5VT25") "A serine/threonine-protein kinase MRCK alpha that is encoded in the genome of human.") AnnotationAssertion(Annotation( "UniProtKB:Q5VT25") "myotonic dystrophy protein kinase-like alpha (human)") AnnotationAssertion( "DTO:03100341") +AnnotationAssertion(Annotation(rdfs:label "PR:Q5VT25 located_in GO:0005829") "Reactome:R-HSA-419871") AnnotationAssertion( "UniProtKB:Q5VT25") AnnotationAssertion(Annotation( "UniProtKB:Q5VT25") "CDC42-binding protein kinase alpha (human)") AnnotationAssertion(Annotation( "UniProtKB:Q5VT25") "DMPK-like alpha (human)") @@ -248644,7 +249581,7 @@ SubClassOf( ObjectSomeValuesFrom( (lens epithelium-derived growth factor (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR12550:SF9") Annotation( "PRO:DNx") "A PC4 and SFRS1-interacting protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5XXA9") Annotation( "PRO:DNx") "A PC4 and SFRS1-interacting protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5XXA9") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PSIP1") AnnotationAssertion( "protein") @@ -248680,7 +249617,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein RER1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZHM5") Annotation( "PANTHER:PTHR10743:SF0") Annotation( "PRO:DNx") "A protein RER1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZHM5") Annotation( "PRO:DNx") "A protein RER1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZHM5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RER1") AnnotationAssertion( "protein") @@ -248735,7 +249672,7 @@ SubClassOf( ObjectSomeValuesFrom( (nuclear nucleic acid-binding protein C1D (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR15341:SF3") Annotation( "PRO:DNx") "A nuclear nucleic acid-binding protein C1D that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZHS3") Annotation( "PRO:DNx") "A nuclear nucleic acid-binding protein C1D that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZHS3") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-C1D") AnnotationAssertion( "protein") @@ -248752,7 +249689,7 @@ SubClassOf( ObjectSomeValuesFrom( (RecQ-mediated genome instability protein 1 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A RecQ-mediated genome instability protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZHV8") Annotation( "PRO:DNx") "A RecQ-mediated genome instability protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZHV8") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RMI1") AnnotationAssertion( "protein") @@ -248820,7 +249757,7 @@ SubClassOf( ObjectSomeValuesFrom( (NADH-cytochrome b5 reductase 2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR19370:SF20") Annotation( "PRO:DNx") "An NADH-cytochrome b5 reductase 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "An NADH-cytochrome b5 reductase 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZHX7") AnnotationAssertion(Annotation( "UniProtKB:Q5ZHX7") "b5R.2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CYB5R2") @@ -248871,7 +249808,7 @@ SubClassOf( ObjectSomeValuesFrom( (tRNA-specific adenosine deaminase 1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10910:SF12") Annotation( "PRO:DNx") "A tRNA-specific adenosine deaminase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A tRNA-specific adenosine deaminase 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZI16") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ADAT1") AnnotationAssertion(Annotation( "UniProtKB:Q5ZI16") "tRNA-specific adenosine-37 deaminase (chicken)") @@ -248905,7 +249842,7 @@ SubClassOf( ObjectSomeValuesFrom( (hydroxyacylglutathione hydrolase, mitochondrial (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZI23") Annotation( "PANTHER:PTHR11935:SF7") Annotation( "PRO:DNx") "A hydroxyacylglutathione hydrolase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZI23") Annotation( "PRO:DNx") "A hydroxyacylglutathione hydrolase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZI23") AnnotationAssertion(Annotation( "UniProtKB:Q5ZI23") "Glx II (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HAGH") @@ -248940,7 +249877,7 @@ SubClassOf( ObjectSomeValuesFrom( (kelch-like protein 7 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZI33") Annotation( "PANTHER:PTHR24412:SF169") Annotation( "PRO:DNx") "A kelch-like protein 7 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZI33") Annotation( "PRO:DNx") "A kelch-like protein 7 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZI33") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-KLHL7") AnnotationAssertion( "protein") @@ -248979,7 +249916,7 @@ SubClassOf( ObjectSomeValuesFrom( (malignant T-cell-amplified sequence 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZI42") Annotation( "PANTHER:PTHR22798:SF0") Annotation( "PRO:DNx") "A malignant T cell-amplified sequence 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZI42") Annotation( "PRO:DNx") "A malignant T cell-amplified sequence 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZI42") AnnotationAssertion(Annotation( "UniProtKB:Q5ZI42") "MCT-1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MCTS1") @@ -248997,7 +249934,7 @@ SubClassOf( ObjectSomeValuesFrom( (snurportin-1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR13403:SF7") Annotation( "PRO:DNx") "A snurportin-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZI43") Annotation( "PRO:DNx") "A snurportin-1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZI43") AnnotationAssertion(Annotation( "UniProtKB:Q5ZI43") "RNA U transporter 1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SNUPN") @@ -249016,7 +249953,7 @@ SubClassOf( ObjectSomeValuesFrom( (ribose-phosphate pyrophosphokinase 2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10210:SF30") Annotation( "PRO:DNx") "A ribose-phosphate pyrophosphokinase 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZI49") Annotation( "PRO:DNx") "A ribose-phosphate pyrophosphokinase 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZI49") AnnotationAssertion(Annotation( "UniProtKB:Q5ZI49") "PRS-II (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PRPS2") @@ -249035,7 +249972,7 @@ SubClassOf( ObjectSomeValuesFrom( (ADP-ribosylhydrolase ARH3 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR16222:SF10") Annotation( "PRO:DNx") "An ADP-ribosylhydrolase ARH3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "An ADP-ribosylhydrolase ARH3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZI51") AnnotationAssertion(Annotation( "UniProtKB:Q5ZI51") "ADP-ribose glycohydrolase ARH3 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZI51") "ADP-ribosylhydrolase 3 (chicken)") @@ -249060,7 +249997,7 @@ SubClassOf( ObjectSomeValuesFrom( (trafficking protein particle complex subunit 3 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZI57") Annotation( "PANTHER:PTHR13048:SF0") Annotation( "PRO:DNx") "A trafficking protein particle complex subunit 3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZI57") Annotation( "PRO:DNx") "A trafficking protein particle complex subunit 3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZI57") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TRAPPC3") AnnotationAssertion( "protein") @@ -249077,7 +250014,7 @@ SubClassOf( ObjectSomeValuesFrom( (NHL repeat-containing protein 2 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "An NHL repeat-containing protein 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZI67") Annotation( "PRO:DNx") "An NHL repeat-containing protein 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZI67") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-NHLRC2") AnnotationAssertion( "protein") @@ -249094,7 +250031,7 @@ SubClassOf( ObjectSomeValuesFrom( (heterogeneous nuclear ribonucleoprotein D-like (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZI72") Annotation( "PANTHER:PTHR24012:SF214") Annotation( "PRO:DNx") "A heterogeneous nuclear ribonucleoprotein D-like that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZI72") Annotation( "PRO:DNx") "A heterogeneous nuclear ribonucleoprotein D-like that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZI72") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HNRNPDL") AnnotationAssertion(Annotation( "UniProtKB:Q5ZI72") "hnRNP D-like (chicken)") @@ -249178,7 +250115,7 @@ SubClassOf( ObjectSomeValuesFrom( (ubiquitin carboxyl-terminal hydrolase 28 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24006:SF2") Annotation( "PRO:DNx") "A ubiquitin carboxyl-terminal hydrolase 28 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A ubiquitin carboxyl-terminal hydrolase 28 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZID5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-USP28") AnnotationAssertion(Annotation( "UniProtKB:Q5ZID5") "deubiquitinating enzyme 28 (chicken)") @@ -249226,7 +250163,7 @@ SubClassOf( ObjectSomeValuesFrom( (carbohydrate sulfotransferase 10 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR12137:SF2") Annotation( "PRO:DNx") "A carbohydrate sulfotransferase 10 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZIE4") Annotation( "PRO:DNx") "A carbohydrate sulfotransferase 10 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZIE4") AnnotationAssertion(Annotation( "UniProtKB:Q5ZIE4") "HNK-1 sulfotransferase (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZIE4") "HNK-1ST (chicken)") @@ -249246,7 +250183,7 @@ SubClassOf( ObjectSomeValuesFrom( (NEDD8-activating enzyme E1 regulatory subunit (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10953:SF29") Annotation( "PRO:DNx") "A NEDD8-activating enzyme E1 regulatory subunit that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A NEDD8-activating enzyme E1 regulatory subunit that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZIE6") AnnotationAssertion(Annotation( "UniProtKB:Q5ZIE6") "APP-BP1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZIE6") "amyloid protein-binding protein 1 (chicken)") @@ -249266,7 +250203,7 @@ SubClassOf( ObjectSomeValuesFrom( (adipocyte plasma membrane-associated protein (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZIF1") Annotation( "PANTHER:PTHR10426:SF6") Annotation( "PRO:DNx") "An adipocyte plasma membrane-associated protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZIF1") Annotation( "PRO:DNx") "An adipocyte plasma membrane-associated protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZIF1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-APMAP") AnnotationAssertion( "protein") @@ -249303,7 +250240,7 @@ SubClassOf( ObjectSomeValuesFrom( (uracil phosphoribosyltransferase homolog (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZIJ8") Annotation( "PANTHER:PTHR10285:SF1") Annotation( "PRO:DNx") "A uracil phosphoribosyltransferase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZIJ8") Annotation( "PRO:DNx") "A uracil phosphoribosyltransferase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZIJ8") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-UPRT") AnnotationAssertion( "protein") @@ -249338,7 +250275,7 @@ SubClassOf( ObjectSomeValuesFrom( (coatomer subunit epsilon (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZIK9") Annotation( "PANTHER:PTHR10805:SF0") Annotation( "PRO:DNx") "A coatomer subunit epsilon that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZIK9") Annotation( "PRO:DNx") "A coatomer subunit epsilon that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZIK9") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-COPE") AnnotationAssertion(Annotation( "UniProtKB:Q5ZIK9") "epsilon-COP (chicken)") @@ -249357,7 +250294,7 @@ SubClassOf( ObjectSomeValuesFrom( (vacuolar protein sorting-associated protein 29 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11124:SF3") Annotation( "PRO:DNx") "A vacuolar protein sorting-associated protein 29 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A vacuolar protein sorting-associated protein 29 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZIL2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-VPS29") AnnotationAssertion(Annotation( "UniProtKB:Q5ZIL2") "vesicle protein sorting 29 (chicken)") @@ -249415,7 +250352,7 @@ SubClassOf( ObjectSomeValuesFrom( (ragulator complex protein LAMTOR3 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR13378:SF0") Annotation( "PRO:DNx") "A mitogen-activated protein kinase scaffold protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZIP2") Annotation( "PRO:DNx") "A mitogen-activated protein kinase scaffold protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZIP2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-LAMTOR3") AnnotationAssertion(Annotation( "UniProtKB:Q5ZIP2") "late endosomal/lysosomal adaptor and MAPK and MTOR activator 3 (chicken)") @@ -249433,7 +250370,7 @@ SubClassOf( ObjectSomeValuesFrom( (deoxyhypusine hydroxylase (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZIP3") Annotation( "PANTHER:PTHR12697:SF5") Annotation( "PRO:DNx") "A deoxyhypusine hydroxylase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZIP3") Annotation( "PRO:DNx") "A deoxyhypusine hydroxylase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZIP3") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-DOHH") AnnotationAssertion(Annotation( "UniProtKB:Q5ZIP3") "deoxyhypusine dioxygenase (chicken)") @@ -249471,7 +250408,7 @@ SubClassOf( ObjectSomeValuesFrom( (endophilin-B1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10661:SF15") Annotation( "PRO:DNx") "An endophilin-B1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZIR1") Annotation( "PRO:DNx") "An endophilin-B1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZIR1") AnnotationAssertion(Annotation( "UniProtKB:Q5ZIR1") "SH3 domain-containing GRB2-like protein B1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SH3GLB1") @@ -249489,7 +250426,7 @@ SubClassOf( ObjectSomeValuesFrom( (high mobility group nucleosome-binding domain-containing protein 3 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A high mobility group nucleosome-binding domain-containing protein 3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZIR5") Annotation( "PRO:DNx") "A high mobility group nucleosome-binding domain-containing protein 3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZIR5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HMGN3") AnnotationAssertion( "protein") @@ -249522,7 +250459,7 @@ SubClassOf( ObjectSomeValuesFrom( (dual specificity tyrosine-phosphorylation-regulated kinase 2 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZIU3") Annotation( "PRO:DNx") "A dual specificity tyrosine-phosphorylation-regulated kinase 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A dual specificity tyrosine-phosphorylation-regulated kinase 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZIU3") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-DYRK2") AnnotationAssertion( "protein") @@ -249557,7 +250494,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein VAC14 homolog (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR16023:SF0") Annotation( "PRO:DNx") "A protein VAC14 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZIW5") Annotation( "PRO:DNx") "A protein VAC14 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZIW5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-VAC14") AnnotationAssertion( "protein") @@ -249609,7 +250546,7 @@ SubClassOf( ObjectSomeValuesFrom( (ribosome maturation protein SBDS (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10927:SF0") Annotation( "PRO:DNx") "A ribosome maturation protein SBDS that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A ribosome maturation protein SBDS that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZIY4") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SBDS") AnnotationAssertion(Annotation( "UniProtKB:Q5ZIY4") "shwachman-Bodian-Diamond syndrome protein homolog (chicken)") @@ -249627,7 +250564,7 @@ SubClassOf( ObjectSomeValuesFrom( (cytosolic purine 5'-nucleotidase (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZIZ4") Annotation( "PANTHER:PTHR12103:SF1") Annotation( "PRO:DNx") "A cytosolic purine 5'-nucleotidase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A cytosolic purine 5'-nucleotidase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZIZ4") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-NT5C2") AnnotationAssertion(Annotation( "UniProtKB:Q5ZIZ4") "cytosolic nucleoside phosphotransferase 5'N (chicken)") @@ -249682,7 +250619,6 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (Rab9 effector protein with kelch motifs (chicken)) @@ -249703,7 +250639,7 @@ SubClassOf( ObjectSomeValuesFrom( (density-regulated protein (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZJ39") Annotation( "PANTHER:PTHR12789:SF0") Annotation( "PRO:DNx") "A density-regulated protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZJ39") Annotation( "PRO:DNx") "A density-regulated protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZJ39") AnnotationAssertion(Annotation( "UniProtKB:Q5ZJ39") "DRP (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-DENR") @@ -249757,7 +250693,7 @@ SubClassOf( ObjectSomeValuesFrom( (eukaryotic translation initiation factor 3 subunit M (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZJ64") Annotation( "PANTHER:PTHR15350:SF3") Annotation( "PRO:DNx") "A eukaryotic translation initiation factor 3 subunit M that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZJ64") Annotation( "PRO:DNx") "A eukaryotic translation initiation factor 3 subunit M that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZJ64") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-EIF3M") AnnotationAssertion(Annotation( "UniProtKB:Q5ZJ64") "eIF3m (chicken)") @@ -249792,7 +250728,7 @@ SubClassOf( ObjectSomeValuesFrom( (endophilin-B2 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZJ81") Annotation( "PANTHER:PTHR10661:SF14") Annotation( "PRO:DNx") "An endophilin-B2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZJ81") Annotation( "PRO:DNx") "An endophilin-B2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZJ81") AnnotationAssertion(Annotation( "UniProtKB:Q5ZJ81") "SH3 domain-containing GRB2-like protein B2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SH3GLB2") @@ -249860,9 +250796,27 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (serine/threonine-protein kinase ULK3 (chicken)) + +AnnotationAssertion(Annotation( "OMA:Q5ZJH6") Annotation( "PRO:DNx") "A serine/threonine-protein kinase ULK3 that is encoded in the genome of chicken.") +AnnotationAssertion( "UniProtKB:Q5ZJH6") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ULK3") +AnnotationAssertion(Annotation( "UniProtKB:Q5ZJH6") "unc-51-like kinase 3 (chicken)") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q5ZJH6") Annotation( ) "RCJMB04_18b17") +AnnotationAssertion(Annotation( "UniProtKB:Q5ZJH6") Annotation( ) "ULK3") +AnnotationAssertion( "PR:Q5ZJH6") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "serine/threonine-protein kinase ULK3 (chicken)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (protein-tyrosine sulfotransferase 2 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZJI0") Annotation( "PANTHER:PTHR12788:SF0") Annotation( "PRO:DNx") "A protein-tyrosine sulfotransferase 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZJI0") Annotation( "PRO:DNx") "A protein-tyrosine sulfotransferase 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZJI0") AnnotationAssertion(Annotation( "UniProtKB:Q5ZJI0") "TPST-2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TPST2") @@ -249900,7 +250854,7 @@ SubClassOf( ObjectSomeValuesFrom( (ubiquitin-associated domain-containing protein 1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR13020:SF2") Annotation( "PRO:DNx") "A ubiquitin-associated domain-containing protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZJI9") Annotation( "PRO:DNx") "A ubiquitin-associated domain-containing protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZJI9") AnnotationAssertion(Annotation( "UniProtKB:Q5ZJI9") "E3 ubiquitin-protein ligase subunit KPC2 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZJI9") "Kip1 ubiquitination-promoting complex protein 2 (chicken)") @@ -249922,7 +250876,7 @@ SubClassOf( ObjectSomeValuesFrom( (ubiquitin-like domain-containing CTD phosphatase 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZJJ8") Annotation( "PANTHER:PTHR13730:SF0") Annotation( "PRO:DNx") "A ubiquitin-like domain-containing CTD phosphatase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZJJ8") Annotation( "PRO:DNx") "A ubiquitin-like domain-containing CTD phosphatase 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZJJ8") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-UBLCP1") AnnotationAssertion(Annotation( "UniProtKB:Q5ZJJ8") "nuclear proteasome inhibitor UBLCP1 (chicken)") @@ -249940,7 +250894,7 @@ SubClassOf( ObjectSomeValuesFrom( (serine/threonine-protein kinase 4 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A serine/threonine-protein kinase 4 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZJK4") Annotation( "PRO:DNx") "A serine/threonine-protein kinase 4 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZJK4") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-STK4") AnnotationAssertion( "protein") @@ -249990,7 +250944,7 @@ SubClassOf( ObjectSomeValuesFrom( (ubiquitin carboxyl-terminal hydrolase 10 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24006:SF40") Annotation( "PRO:DNx") "A ubiquitin carboxyl-terminal hydrolase 10 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZJN4") Annotation( "PRO:DNx") "A ubiquitin carboxyl-terminal hydrolase 10 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZJN4") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-USP10") AnnotationAssertion(Annotation( "UniProtKB:Q5ZJN4") "deubiquitinating enzyme 10 (chicken)") @@ -250027,7 +250981,7 @@ SubClassOf( ObjectSomeValuesFrom( (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZJQ7") Annotation( "PANTHER:PTHR20383:SF9") Annotation( "PRO:DNx") "An RNA polymerase II subunit A C-terminal domain phosphatase SSU72 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZJQ7") Annotation( "PRO:DNx") "An RNA polymerase II subunit A C-terminal domain phosphatase SSU72 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZJQ7") AnnotationAssertion(Annotation( "UniProtKB:Q5ZJQ7") "CTD phosphatase SSU72 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SSU72") @@ -250063,7 +251017,7 @@ SubClassOf( ObjectSomeValuesFrom( (calcipressin-3 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZJV6") Annotation( "PANTHER:PTHR10300:SF6") Annotation( "PRO:DNx") "A calcipressin-3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZJV6") Annotation( "PRO:DNx") "A calcipressin-3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZJV6") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RCAN3") AnnotationAssertion(Annotation( "UniProtKB:Q5ZJV6") "regulator of calcineurin 3 (chicken)") @@ -250081,7 +251035,7 @@ SubClassOf( ObjectSomeValuesFrom( (NF-kappa-B inhibitor-interacting Ras-like protein 2 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZJW6") Annotation( "PANTHER:PTHR24070:SF275") Annotation( "PRO:DNx") "An NF-kappa-B inhibitor-interacting Ras-like protein 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZJW6") Annotation( "PRO:DNx") "An NF-kappa-B inhibitor-interacting Ras-like protein 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZJW6") AnnotationAssertion(Annotation( "UniProtKB:Q5ZJW6") "I-kappa-B-interacting Ras-like protein 2 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZJW6") "KappaB-Ras2 (chicken)") @@ -250101,7 +251055,7 @@ SubClassOf( ObjectSomeValuesFrom( (solute carrier family 35 member G2 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A solute carrier family 35 member G2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZJZ4") Annotation( "PRO:DNx") "A solute carrier family 35 member G2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZJZ4") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SLC35G2") AnnotationAssertion(Annotation( "UniProtKB:Q5ZJZ4") "transmembrane protein 22 (chicken)") @@ -250157,7 +251111,7 @@ SubClassOf( ObjectSomeValuesFrom( (Toll-interacting protein (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR16461:SF3") Annotation( "PRO:DNx") "A Toll-interacting protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZK05") Annotation( "PRO:DNx") "A Toll-interacting protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZK05") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TOLLIP") AnnotationAssertion( "protein") @@ -250174,7 +251128,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein Hikeshi (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZK09") Annotation( "PRO:DNx") "A protein Hikeshi that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DAN") "A protein Hikeshi that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZK09") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HIKESHI") AnnotationAssertion( "protein") @@ -250189,18 +251143,20 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (cotranscriptional regulator FAM172A homolog (chicken)) +# Class: (cotranscriptional regulator ARB2A homolog (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZK44") Annotation( "PRO:DNx") "A cotranscriptional regulator FAM172A that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZK44") Annotation( "PRO:DNx") "A cotranscriptional regulator ARB2A that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZK44") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-FAM172A") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ARB2A") +AnnotationAssertion(Annotation( "UniProtKB:Q5ZK44") "cotranscriptional regulator FAM172A homolog (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZK44") "protein FAM172A (chicken)") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q5ZK44") Annotation( ) "ARB2A") AnnotationAssertion(Annotation( "UniProtKB:Q5ZK44") Annotation( ) "FAM172A") AnnotationAssertion(Annotation( "UniProtKB:Q5ZK44") Annotation( ) "RCJMB04_13e16") AnnotationAssertion( "PR:Q5ZK44") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "cotranscriptional regulator FAM172A homolog (chicken)") +AnnotationAssertion(rdfs:label "cotranscriptional regulator ARB2A homolog (chicken)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -250248,7 +251204,7 @@ SubClassOf( ObjectSomeValuesFrom( (biogenesis of lysosome-related organelles complex 1 subunit 5 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein Muted that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZK77") Annotation( "PRO:DNx") "A protein Muted that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZK77") AnnotationAssertion(Annotation( "UniProtKB:Q5ZK77") "BLOC-1 subunit 5 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-BLOC1S5") @@ -250268,7 +251224,7 @@ SubClassOf( ObjectSomeValuesFrom( (aldo-keto reductase family 1 member A1 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "An aldo-keto reductase family 1 member A1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZK84") Annotation( "PRO:DNx") "An aldo-keto reductase family 1 member A1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZK84") AnnotationAssertion(Annotation( "UniProtKB:Q5ZK84") "alcohol dehydrogenase [NADP(+)] (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZK84") "aldehyde reductase (chicken)") @@ -250287,7 +251243,7 @@ SubClassOf( ObjectSomeValuesFrom( (paraspeckle component 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZK88") Annotation( "PANTHER:PTHR23189:SF14") Annotation( "PRO:DNx") "A paraspeckle component 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZK88") Annotation( "PRO:DNx") "A paraspeckle component 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZK88") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PSPC1") AnnotationAssertion( "protein") @@ -250304,7 +251260,7 @@ SubClassOf( ObjectSomeValuesFrom( (arylsulfatase K (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10342:SF9") Annotation( "PRO:DNx") "An arylsulfatase K that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZK90") Annotation( "PRO:DNx") "An arylsulfatase K that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZK90") AnnotationAssertion(Annotation( "UniProtKB:Q5ZK90") "ASK (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ARSK") @@ -250339,7 +251295,7 @@ SubClassOf( ObjectSomeValuesFrom( (eukaryotic translation initiation factor 3 subunit J (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZKA4") Annotation( "PANTHER:PTHR21681:SF0") Annotation( "PRO:DNx") "A eukaryotic translation initiation factor 3 subunit J that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZKA4") Annotation( "PRO:DNx") "A eukaryotic translation initiation factor 3 subunit J that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKA4") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-EIF3J") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKA4") "eIF-3-alpha (chicken)") @@ -250361,7 +251317,7 @@ SubClassOf( ObjectSomeValuesFrom( (bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10025:SF17") Annotation( "PRO:DNx") "A bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKA5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MTHFD2") AnnotationAssertion( "protein") @@ -250378,7 +251334,7 @@ SubClassOf( ObjectSomeValuesFrom( (cysteine-rich PDZ-binding protein (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZKB6") Annotation( "PANTHER:PTHR11800:SF16") Annotation( "PRO:DNx") "A cysteine-rich PDZ-binding protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZKB6") Annotation( "PRO:DNx") "A cysteine-rich PDZ-binding protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKB6") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CRIPT") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKB6") "cysteine-rich interactor of PDZ three (chicken)") @@ -250415,7 +251371,7 @@ SubClassOf( ObjectSomeValuesFrom( (eukaryotic translation initiation factor 2A (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR13227:SF5") Annotation( "PRO:DNx") "A eukaryotic translation initiation factor 2A that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZKC1") Annotation( "PRO:DNx") "A eukaryotic translation initiation factor 2A that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKC1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-EIF2A") AnnotationAssertion( "protein") @@ -250450,7 +251406,7 @@ SubClassOf( ObjectSomeValuesFrom( (N-acetylneuraminate lyase (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR12128:SF10") Annotation( "PRO:DNx") "An N-acetylneuraminate lyase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZKD4") Annotation( "PRO:DNx") "An N-acetylneuraminate lyase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKD4") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKD4") "N-acetylneuraminate pyruvate-lyase (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKD4") "N-acetylneuraminic acid aldolase (chicken)") @@ -250492,7 +251448,7 @@ SubClassOf( ObjectSomeValuesFrom( (S-phase kinase-associated protein 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZKF5") Annotation( "PANTHER:PTHR11165:SF21") Annotation( "PRO:DNx") "An S-phase kinase-associated protein 1A that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZKF5") Annotation( "PRO:DNx") "An S-phase kinase-associated protein 1A that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKF5") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKF5") "S-phase kinase-associated protein 1A (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SKP1") @@ -250514,7 +251470,7 @@ SubClassOf( ObjectSomeValuesFrom( (7-methylguanosine phosphate-specific 5'-nucleotidase (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR13045:SF0") Annotation( "PRO:DNx") "A 7-methylguanosine phosphate-specific 5'-nucleotidase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A 7-methylguanosine phosphate-specific 5'-nucleotidase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKF6") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKF6") "N(7)-methylguanylate 5'-phosphatase (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKF6") "cN-III-like protein (chicken)") @@ -250537,7 +251493,7 @@ SubClassOf( ObjectSomeValuesFrom( (polycomb protein EED (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZKH3") Annotation( "PANTHER:PTHR10253:SF3") Annotation( "PRO:DNx") "A polycomb protein EED that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A polycomb protein EED that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKH3") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-EED") AnnotationAssertion( "protein") @@ -250554,7 +251510,7 @@ SubClassOf( ObjectSomeValuesFrom( (nuclear distribution protein nudE-like 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZKH4") Annotation( "PANTHER:PTHR10921:SF0") Annotation( "PRO:DNx") "A nuclear distribution protein nudE-like 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A nuclear distribution protein nudE-like 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKH4") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-NDEL1") AnnotationAssertion( "protein") @@ -250571,7 +251527,7 @@ SubClassOf( ObjectSomeValuesFrom( (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10762:SF2") Annotation( "PRO:DNx") "A 2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A 2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKI2") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKI2") "S-adenosyl-L-methionine:L-histidine 3-amino-3-carboxypropyltransferase 2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-DPH2") @@ -250591,7 +251547,7 @@ SubClassOf( ObjectSomeValuesFrom( (glucoside xylosyltransferase 1 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A glucoside xylosyltransferase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZKI6") Annotation( "PRO:DNx") "A glucoside xylosyltransferase 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKI6") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-GXYLT1") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKI6") "glycosyltransferase 8 domain-containing protein 3 (chicken)") @@ -250627,7 +251583,7 @@ SubClassOf( ObjectSomeValuesFrom( (microtubule-associated protein RP/EB family member 2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10623:SF7") Annotation( "PRO:DNx") "A microtubule-associated protein RP/EB family member 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A microtubule-associated protein RP/EB family member 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKK1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MAPRE2") AnnotationAssertion( "protein") @@ -250640,7 +251596,6 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (bridging integrator 2 (chicken)) @@ -250661,7 +251616,7 @@ SubClassOf( ObjectSomeValuesFrom( (dysbindin (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZKM0") Annotation( "PANTHER:PTHR16294:SF0") Annotation( "PRO:DNx") "A dysbindin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A dysbindin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKM0") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKM0") "BLOC-1 subunit 8 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKM0") "biogenesis of lysosome-related organelles complex 1 subunit 8 (chicken)") @@ -250702,7 +251657,7 @@ SubClassOf( ObjectSomeValuesFrom( (cobalamin trafficking protein CblD (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZKP2") Annotation( "PANTHER:PTHR13192:SF0") Annotation( "PRO:DNx") "A cobalamin trafficking protein CblD that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZKP2") Annotation( "PRO:DNx") "A cobalamin trafficking protein CblD that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKP2") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKP2") "CblD (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MMADHC") @@ -250738,7 +251693,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein GOLM2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR15896:SF4") Annotation( "PRO:DNx") "A protein GOLM2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein GOLM2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKQ5") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKQ5") "Golgi membrane protein 2 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKQ5") "cancer susceptibility candidate gene 4 protein homolog (chicken)") @@ -250758,7 +251713,7 @@ SubClassOf( ObjectSomeValuesFrom( (DNA polymerase epsilon subunit 2 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZKQ6") Annotation( "PANTHER:PTHR12708:SF0") Annotation( "PRO:DNx") "A DNA polymerase epsilon subunit 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A DNA polymerase epsilon subunit 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKQ6") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKQ6") "DNA polymerase II subunit 2 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKQ6") "DNA polymerase epsilon subunit B (chicken)") @@ -250847,7 +251802,7 @@ SubClassOf( ObjectSomeValuesFrom( (beclin-1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR12768:SF2") Annotation( "PRO:DNx") "A beclin-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZKS6") Annotation( "PRO:DNx") "A beclin-1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKS6") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-BECN1") AnnotationAssertion( "protein") @@ -250864,7 +251819,7 @@ SubClassOf( ObjectSomeValuesFrom( (EEF1A lysine methyltransferase 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZKT6") Annotation( "PANTHER:PTHR13200:SF0") Annotation( "PRO:DNx") "An EEF1A lysine methyltransferase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZKT6") Annotation( "PRO:DNx") "An EEF1A lysine methyltransferase 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKT6") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKT6") "N(6)-adenine-specific DNA methyltransferase 2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-EEF1AKMT1") @@ -250904,7 +251859,7 @@ SubClassOf( ObjectSomeValuesFrom( (Ras-related protein Rab-14 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZKU5") Annotation( "PANTHER:PTHR24073:SF248") Annotation( "PRO:DNx") "A Ras-related protein Rab-14 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZKU5") Annotation( "PRO:DNx") "A Ras-related protein Rab-14 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKU5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RAB14") AnnotationAssertion( "protein") @@ -250921,7 +251876,7 @@ SubClassOf( ObjectSomeValuesFrom( (cytosolic Fe-S cluster assembly factor NUBP2 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZKV4") Annotation( "PANTHER:PTHR23264:SF9") Annotation( "PRO:DNx") "A cytosolic Fe-S cluster assembly factor NUBP2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZKV4") Annotation( "PRO:DNx") "A cytosolic Fe-S cluster assembly factor NUBP2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKV4") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKV4") "NBP 2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-NUBP2") @@ -250940,7 +251895,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein LZIC (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZKW2") Annotation( "PANTHER:PTHR16505:SF1") Annotation( "PRO:DNx") "A protein LZIC that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZKW2") Annotation( "PRO:DNx") "A protein LZIC that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKW2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-LZIC") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKW2") "leucine zipper and CTNNBIP1 domain-containing protein (chicken)") @@ -250959,7 +251914,7 @@ SubClassOf( ObjectSomeValuesFrom( (ADP-ribosylation factor-like protein 2-binding protein (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZKW5") Annotation( "PANTHER:PTHR15487:SF2") Annotation( "PRO:DNx") "An ADP-ribosylation factor-like protein 2-binding protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "An ADP-ribosylation factor-like protein 2-binding protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKW5") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKW5") "ARF-like 2-binding protein (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ARL2BP") @@ -251013,7 +251968,7 @@ SubClassOf( ObjectSomeValuesFrom( (inhibitor of growth protein 4 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZKY4") Annotation( "PANTHER:PTHR10333:SF40") Annotation( "PRO:DNx") "An inhibitor of growth protein 4 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "An inhibitor of growth protein 4 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKY4") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ING4") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKY4") "p29ING4 (chicken)") @@ -251031,7 +251986,7 @@ SubClassOf( ObjectSomeValuesFrom( (mediator of RNA polymerase II transcription subunit 20 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZKY9") Annotation( "PANTHER:PTHR12465:SF0") Annotation( "PRO:DNx") "A mediator of RNA polymerase II transcription subunit 20 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZKY9") Annotation( "PRO:DNx") "A mediator of RNA polymerase II transcription subunit 20 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKY9") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKY9") "TRF-proximal protein homolog (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MED20") @@ -251051,11 +252006,15 @@ SubClassOf( ObjectSomeValuesFrom( (DnaJ homolog subfamily C member 16 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A DnaJ homolog subfamily C member 16 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZKZ4") Annotation( "PRO:DNx") "A DnaJ homolog subfamily C member 16 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZKZ4") +AnnotationAssertion(Annotation( "UniProtKB:Q5ZKZ4") "ER-resident protein ERdj8 (chicken)") +AnnotationAssertion(Annotation( "UniProtKB:Q5ZKZ4") "ERdj8 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-DNAJC16") +AnnotationAssertion(Annotation( "UniProtKB:Q5ZKZ4") "endoplasmic reticulum DNA J domain-containing protein 8 (chicken)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKZ4") Annotation( ) "DNAJC16") +AnnotationAssertion(Annotation( "UniProtKB:Q5ZKZ4") Annotation( ) "ERDJ8") AnnotationAssertion(Annotation( "UniProtKB:Q5ZKZ4") Annotation( ) "RCJMB04_8j20") AnnotationAssertion( "PR:Q5ZKZ4") AnnotationAssertion(rdfs:comment "Category=organism-gene.") @@ -251068,7 +252027,7 @@ SubClassOf( ObjectSomeValuesFrom( (ER membrane protein complex subunit 1 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "An ER membrane protein complex subunit 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZL00") Annotation( "PRO:DNx") "An ER membrane protein complex subunit 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZL00") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-EMC1") AnnotationAssertion( "protein") @@ -251085,7 +252044,7 @@ SubClassOf( ObjectSomeValuesFrom( (syntaxin-6 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZL19") Annotation( "PANTHER:PTHR12380:SF10") Annotation( "PRO:DNx") "A syntaxin-6 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZL19") Annotation( "PRO:DNx") "A syntaxin-6 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZL19") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-STX6") AnnotationAssertion( "protein") @@ -251123,7 +252082,7 @@ SubClassOf( ObjectSomeValuesFrom( (phosphoribosyl pyrophosphate synthase-associated protein 2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10210:SF29") Annotation( "PRO:DNx") "A phosphoribosyl pyrophosphate synthase-associated protein 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZL26") Annotation( "PRO:DNx") "A phosphoribosyl pyrophosphate synthase-associated protein 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZL26") AnnotationAssertion(Annotation( "UniProtKB:Q5ZL26") "PRPP synthase-associated protein 2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PRPSAP2") @@ -251141,7 +252100,7 @@ SubClassOf( ObjectSomeValuesFrom( (SAGA-associated factor 29 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZL38") Annotation( "PANTHER:PTHR21539:SF0") Annotation( "PRO:DNx") "A SAGA-associated factor 29 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DAN") "A SAGA-associated factor 29 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZL38") AnnotationAssertion(Annotation( "UniProtKB:Q5ZL38") "SAGA complex-associated factor 29 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SGF29") @@ -251180,7 +252139,7 @@ SubClassOf( ObjectSomeValuesFrom( (acireductone dioxygenase (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZL43") Annotation( "PANTHER:PTHR23418:SF0") Annotation( "PRO:DNx") "An acireductone dioxygenase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZL43") Annotation( "PRO:DNx") "An acireductone dioxygenase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZL43") AnnotationAssertion(Annotation( "UniProtKB:Q5ZL43") "ARD (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZL43") "ARD' (chicken)") @@ -251224,7 +252183,7 @@ SubClassOf( ObjectSomeValuesFrom( (endoplasmic reticulum membrane sensor NFE2L1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZL67") Annotation( "PANTHER:PTHR24411:SF186") Annotation( "PRO:DNx") "An endoplasmic reticulum membrane sensor NFE2L1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZL67") Annotation( "PRO:DNx") "An endoplasmic reticulum membrane sensor NFE2L1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZL67") AnnotationAssertion(Annotation( "UniProtKB:Q5ZL67") "NF-E2-related factor 1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZL67") "NFE2-related factor 1 (chicken)") @@ -251246,7 +252205,7 @@ SubClassOf( ObjectSomeValuesFrom( (vesicle-associated membrane protein 7 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZL74") Annotation( "PANTHER:PTHR21136:SF8") Annotation( "PRO:DNx") "A vesicle-associated membrane protein 7 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZL74") Annotation( "PRO:DNx") "A vesicle-associated membrane protein 7 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZL74") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-VAMP7") AnnotationAssertion(Annotation( "UniProtKB:Q5ZL74") "synaptobrevin-like protein 1 (chicken)") @@ -251265,7 +252224,7 @@ SubClassOf( ObjectSomeValuesFrom( (synembryn-A (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZL77") Annotation( "PANTHER:PTHR12425:SF0") Annotation( "PRO:DNx") "A synembryn-A that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZL77") Annotation( "PRO:DNx") "A synembryn-A that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZL77") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RIC8A") AnnotationAssertion(Annotation( "UniProtKB:Q5ZL77") "protein Ric-8A (chicken)") @@ -251299,7 +252258,7 @@ SubClassOf( ObjectSomeValuesFrom( (microtubule-associated protein RP/EB family member 1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10623:SF8") Annotation( "PRO:DNx") "A microtubule-associated protein RP/EB family member 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A microtubule-associated protein RP/EB family member 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZLC7") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MAPRE1") AnnotationAssertion( "protein") @@ -251316,7 +252275,7 @@ SubClassOf( ObjectSomeValuesFrom( (golgin subfamily A member 7 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR13254:SF0") Annotation( "PRO:DNx") "A golgin subfamily A member 7 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZLC9") Annotation( "PRO:DNx") "A golgin subfamily A member 7 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZLC9") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-GOLGA7") AnnotationAssertion( "protein") @@ -251333,7 +252292,7 @@ SubClassOf( ObjectSomeValuesFrom( (vacuolar protein sorting-associated protein 53 homolog (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZLD7") Annotation( "PANTHER:PTHR12820:SF0") Annotation( "PRO:DNx") "A vacuolar protein sorting-associated protein 53 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZLD7") Annotation( "PRO:DNx") "A vacuolar protein sorting-associated protein 53 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZLD7") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-VPS53") AnnotationAssertion( "protein") @@ -251350,7 +252309,7 @@ SubClassOf( ObjectSomeValuesFrom( (Hsc70-interacting protein (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR22904:SF34") Annotation( "PRO:DNx") "An Hsc70-interacting protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "An Hsc70-interacting protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZLF0") AnnotationAssertion(Annotation( "UniProtKB:Q5ZLF0") "Hip (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ST13") @@ -251466,7 +252425,7 @@ SubClassOf( ObjectSomeValuesFrom( (transmembrane protein 70, mitochondrial (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR13281:SF0") Annotation( "PRO:DNx") "A transmembrane protein 70, mitochondrial that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZLJ4") Annotation( "PRO:DNx") "A transmembrane protein 70, mitochondrial that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZLJ4") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TMEM70") AnnotationAssertion( "protein") @@ -251483,7 +252442,7 @@ SubClassOf( ObjectSomeValuesFrom( (UBX domain-containing protein 2B (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZLK2") Annotation( "PANTHER:PTHR23333:SF14") Annotation( "PRO:DNx") "A UBX domain-containing protein 2B that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A UBX domain-containing protein 2B that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZLK2") AnnotationAssertion(Annotation( "UniProtKB:Q5ZLK2") "NSFL1 cofactor p37 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-UBXN2B") @@ -251502,7 +252461,7 @@ SubClassOf( ObjectSomeValuesFrom( (prolyl 4-hydroxylase subunit alpha-2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10869:SF41") Annotation( "PRO:DNx") "A prolyl 4-hydroxylase subunit alpha-2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A prolyl 4-hydroxylase subunit alpha-2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZLK5") AnnotationAssertion(Annotation( "UniProtKB:Q5ZLK5") "4-PH alpha-2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-P4HA2") @@ -251521,7 +252480,7 @@ SubClassOf( ObjectSomeValuesFrom( (hypoxia up-regulated protein 1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR19375:SF7") Annotation( "PRO:DNx") "A hypoxia up-regulated protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A hypoxia up-regulated protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZLK7") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HYOU1") AnnotationAssertion( "protein") @@ -251534,11 +252493,10 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZLL5") Annotation( "PRO:DNx") "A 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZLL5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-COQ5") AnnotationAssertion(Annotation( "UniProtKB:Q5ZLL5") "ubiquinone biosynthesis methyltransferase COQ5 (chicken)") @@ -251556,7 +252514,7 @@ SubClassOf( ObjectSomeValuesFrom( (breast cancer metastasis-suppressor 1-like protein (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR21964:SF2") Annotation( "PRO:DNx") "A breast cancer metastasis-suppressor 1-like protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZLL9") Annotation( "PRO:DNx") "A breast cancer metastasis-suppressor 1-like protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZLL9") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-BRMS1L") AnnotationAssertion( "protein") @@ -251589,7 +252547,7 @@ SubClassOf( ObjectSomeValuesFrom( (flap endonuclease 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZLN4") Annotation( "PANTHER:PTHR11081:SF9") Annotation( "PRO:DNx") "A flap endonuclease 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZLN4") Annotation( "PRO:DNx") "A flap endonuclease 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZLN4") AnnotationAssertion(Annotation( "UniProtKB:Q5ZLN4") "FEN-1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-FEN1") @@ -251608,7 +252566,7 @@ SubClassOf( ObjectSomeValuesFrom( (TAR DNA-binding protein 43 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24011:SF6") Annotation( "PRO:DNx") "A TAR DNA-binding protein 43 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A TAR DNA-binding protein 43 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZLN5") AnnotationAssertion(Annotation( "UniProtKB:Q5ZLN5") "TDP-43 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TARDBP") @@ -251660,7 +252618,7 @@ SubClassOf( ObjectSomeValuesFrom( (peptidyl-prolyl cis-trans isomerase-like 3 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZLV2") Annotation( "PANTHER:PTHR11071:SF38") Annotation( "PRO:DNx") "A peptidyl-prolyl cis-trans isomerase-like 3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZLV2") Annotation( "PRO:DNx") "A peptidyl-prolyl cis-trans isomerase-like 3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZLV2") AnnotationAssertion(Annotation( "UniProtKB:Q5ZLV2") "PPIase (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PPIL3") @@ -251680,11 +252638,12 @@ SubClassOf( ObjectSomeValuesFrom( (eukaryotic translation initiation factor 2 subunit 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZLX2") Annotation( "PANTHER:PTHR10602:SF0") Annotation( "PRO:DNx") "A eukaryotic translation initiation factor 2 subunit 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZLX2") Annotation( "PRO:DNx") "A eukaryotic translation initiation factor 2 subunit 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZLX2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-EIF2S1") AnnotationAssertion(Annotation( "UniProtKB:Q5ZLX2") "eIF-2-alpha (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZLX2") "eIF-2alpha (chicken)") +AnnotationAssertion(Annotation( "UniProtKB:Q5ZLX2") "eIF2-alpha (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZLX2") "eukaryotic translation initiation factor 2 subunit alpha (chicken)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q5ZLX2") Annotation( ) "EIF2A") @@ -251702,7 +252661,7 @@ SubClassOf( ObjectSomeValuesFrom( (hydroxyacylglutathione hydrolase-like protein (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZLY2") Annotation( "PANTHER:PTHR11935:SF7") Annotation( "PRO:DNx") "A hydroxyacylglutathione hydrolase-like protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZLY2") Annotation( "PRO:DNx") "A hydroxyacylglutathione hydrolase-like protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZLY2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HAGHL") AnnotationAssertion( "protein") @@ -251742,7 +252701,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q5ZM14") AnnotationAssertion(Annotation( "UniProtKB:Q5ZM14") "EBP50 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZM14") "NHERF-1 (chicken)") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SLC9A3R1") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-NHERF1") AnnotationAssertion(Annotation( "UniProtKB:Q5ZM14") "ezrin-radixin-moesin-binding phosphoprotein 50 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZM14") "regulatory cofactor of Na(+)/H(+) exchanger (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZM14") "sodium-hydrogen exchanger regulatory factor 1 (chicken)") @@ -251763,7 +252722,7 @@ SubClassOf( ObjectSomeValuesFrom( (pre-mRNA-splicing factor RBM22 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZM16") Annotation( "PANTHER:PTHR14089:SF4") Annotation( "PRO:DNx") "A pre-mRNA-splicing factor RBM22 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZM16") Annotation( "PRO:DNx") "A pre-mRNA-splicing factor RBM22 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZM16") AnnotationAssertion(Annotation( "UniProtKB:Q5ZM16") "RNA-binding motif protein 22 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RBM22") @@ -251781,7 +252740,7 @@ SubClassOf( ObjectSomeValuesFrom( (regulation of nuclear pre-mRNA domain-containing protein 1A (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZM30") Annotation( "PANTHER:PTHR12460:SF0") Annotation( "PRO:DNx") "A regulation of nuclear pre-mRNA domain-containing protein 1A that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZM30") Annotation( "PRO:DNx") "A regulation of nuclear pre-mRNA domain-containing protein 1A that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZM30") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RPRD1A") AnnotationAssertion(Annotation( "UniProtKB:Q5ZM30") "cyclin-dependent kinase inhibitor 2B-related protein (chicken)") @@ -251818,7 +252777,7 @@ SubClassOf( ObjectSomeValuesFrom( (B-cell lymphoma 6 protein homolog (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR23228:SF26") Annotation( "PRO:DNx") "A B-cell lymphoma 6 protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZM39") Annotation( "PRO:DNx") "A B-cell lymphoma 6 protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZM39") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-BCL6") AnnotationAssertion( "protein") @@ -251857,7 +252816,7 @@ SubClassOf( ObjectSomeValuesFrom( (cell cycle progression protein 1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR15199:SF0") Annotation( "PRO:DNx") "A cell cycle progression protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZM60") Annotation( "PRO:DNx") "A cell cycle progression protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZM60") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CCPG1") AnnotationAssertion( "protein") @@ -251874,7 +252833,7 @@ SubClassOf( ObjectSomeValuesFrom( (mitochondrial Rho GTPase 1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24072:SF14") Annotation( "PRO:DNx") "A mitochondrial Rho GTPase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZM73") Annotation( "PRO:DNx") "A mitochondrial Rho GTPase 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZM73") AnnotationAssertion(Annotation( "UniProtKB:Q5ZM73") "MIRO-1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZM73") "Ras homolog gene family member T1 (chicken)") @@ -251893,7 +252852,7 @@ SubClassOf( ObjectSomeValuesFrom( (RING finger protein 141 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZM74") Annotation( "PANTHER:PTHR12109:SF2") Annotation( "PRO:DNx") "A RING finger protein 141 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZM74") Annotation( "PRO:DNx") "A RING finger protein 141 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZM74") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RNF141") AnnotationAssertion( "protein") @@ -251910,7 +252869,7 @@ SubClassOf( ObjectSomeValuesFrom( (cAMP-dependent protein kinase type I-alpha regulatory subunit (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZM91") Annotation( "PANTHER:PTHR11635:SF17") Annotation( "PRO:DNx") "A cAMP-dependent protein kinase type I-alpha regulatory subunit that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZM91") Annotation( "PRO:DNx") "A cAMP-dependent protein kinase type I-alpha regulatory subunit that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZM91") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PRKAR1A") AnnotationAssertion( "protein") @@ -251927,7 +252886,7 @@ SubClassOf( ObjectSomeValuesFrom( (queuine tRNA-ribosyltransferase accessory subunit 2 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A queuine tRNA-ribosyltransferase accessory subunit 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZM96") Annotation( "PRO:DNx") "A queuine tRNA-ribosyltransferase accessory subunit 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZM96") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-QTRT2") AnnotationAssertion(Annotation( "UniProtKB:Q5ZM96") "queuine tRNA-ribosyltransferase domain-containing protein 1 (chicken)") @@ -251966,7 +252925,7 @@ SubClassOf( ObjectSomeValuesFrom( (pre-mRNA-processing factor 19 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZMA2") Annotation( "PANTHER:PTHR13889:SF8") Annotation( "PRO:DNx") "A pre-mRNA-processing factor 19 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZMA2") Annotation( "PRO:DNx") "A pre-mRNA-processing factor 19 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZMA2") AnnotationAssertion(Annotation( "UniProtKB:Q5ZMA2") "PRP19/PSO4 homolog (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZMA2") "RING-type E3 ubiquitin transferase PRP19 (chicken)") @@ -251985,7 +252944,7 @@ SubClassOf( ObjectSomeValuesFrom( (RNA-binding protein 24 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24011:SF25") Annotation( "PRO:DNx") "An RNA-binding protein 24 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "An RNA-binding protein 24 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZMA3") AnnotationAssertion(Annotation( "UniProtKB:Q5ZMA3") "RNA-binding motif protein 24 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RBM24") @@ -252003,7 +252962,7 @@ SubClassOf( ObjectSomeValuesFrom( (heme-binding protein 1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11220:SF2") Annotation( "PRO:DNx") "A heme-binding protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZMB2") Annotation( "PRO:DNx") "A heme-binding protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZMB2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HEBP1") AnnotationAssertion( "protein") @@ -252020,7 +252979,7 @@ SubClassOf( ObjectSomeValuesFrom( (endothelial differentiation-related factor 1 homolog (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZMC0") Annotation( "PANTHER:PTHR10245:SF1") Annotation( "PRO:DNx") "An endothelial differentiation-related factor 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZMC0") Annotation( "PRO:DNx") "An endothelial differentiation-related factor 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZMC0") AnnotationAssertion(Annotation( "UniProtKB:Q5ZMC0") "EDF-1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-EDF1") @@ -252054,7 +253013,7 @@ SubClassOf( ObjectSomeValuesFrom( (GSK3-beta interaction protein (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZMC6") Annotation( "PANTHER:PTHR12490:SF0") Annotation( "PRO:DNx") "A GSK3B-interacting protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A GSK3B-interacting protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZMC6") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-GSKIP") AnnotationAssertion( "protein") @@ -252071,7 +253030,7 @@ SubClassOf( ObjectSomeValuesFrom( (nuclear distribution protein nudE homolog 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZMC9") Annotation( "PANTHER:PTHR10921:SF1") Annotation( "PRO:DNx") "A nuclear distribution protein nudE homolog 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZMC9") Annotation( "PRO:DNx") "A nuclear distribution protein nudE homolog 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZMC9") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-NDE1") AnnotationAssertion( "protein") @@ -252122,7 +253081,7 @@ SubClassOf( ObjectSomeValuesFrom( (deoxycytidine kinase (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10513:SF7") Annotation( "PRO:DNx") "A deoxycytidine kinase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZMF3") Annotation( "PRO:DNx") "A deoxycytidine kinase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZMF3") AnnotationAssertion(Annotation( "UniProtKB:Q5ZMF3") "GgdCK") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-DCK") @@ -252160,7 +253119,7 @@ SubClassOf( ObjectSomeValuesFrom( (major vault protein (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR14165:SF3") Annotation( "PRO:DNx") "A major vault protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A major vault protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZMI4") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MVP") AnnotationAssertion( "protein") @@ -252177,7 +253136,7 @@ SubClassOf( ObjectSomeValuesFrom( (bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR12480:SF5") Annotation( "PRO:DNx") "A bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZMK5") Annotation( "PRO:DNx") "A bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZMK5") AnnotationAssertion(Annotation( "UniProtKB:Q5ZMK5") "JmjC domain-containing protein 6 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-JMJD6") @@ -252202,7 +253161,7 @@ SubClassOf( ObjectSomeValuesFrom( (importin subunit alpha-5 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "An importin subunit alpha-5 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZML1") Annotation( "PRO:DNx") "An importin subunit alpha-5 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZML1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-KPNA1") AnnotationAssertion(Annotation( "UniProtKB:Q5ZML1") "karyopherin subunit alpha-1 (chicken)") @@ -252256,7 +253215,7 @@ SubClassOf( ObjectSomeValuesFrom( (prohibitin-2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR23222:SF0") Annotation( "PRO:DNx") "A prohibitin-2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZMN3") Annotation( "PRO:DNx") "A prohibitin-2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZMN3") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PHB2") AnnotationAssertion( "protein") @@ -252375,7 +253334,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein Dr1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZMV3") Annotation( "PANTHER:PTHR11064:SF8") Annotation( "PRO:DNx") "A protein Dr1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZMV3") Annotation( "PRO:DNx") "A protein Dr1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZMV3") AnnotationAssertion(Annotation( "UniProtKB:Q5ZMV3") "Down-regulator of transcription 1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZMV3") "NC2-beta (chicken)") @@ -252396,7 +253355,7 @@ SubClassOf( ObjectSomeValuesFrom( (Rho GTPase-activating protein 26 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q5ZMW5") Annotation( "PANTHER:PTHR12552:SF1") Annotation( "PRO:DNx") "A Rho GTPase-activating protein 26 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q5ZMW5") Annotation( "PRO:DNx") "A Rho GTPase-activating protein 26 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q5ZMW5") AnnotationAssertion(Annotation( "UniProtKB:Q5ZMW5") "GTPase regulator associated with focal adhesion kinase (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q5ZMW5") "Rho-type GTPase-activating protein 26 (chicken)") @@ -252660,7 +253619,7 @@ SubClassOf( ObjectSomeValuesFrom( (ganglioside GM2 activator (mouse)) -AnnotationAssertion(Annotation( "OMA:Q60648") Annotation( "PANTHER:PTHR17357:SF0") Annotation( "PRO:DNx") "A ganglioside GM2 activator that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q60648") Annotation( "PRO:DNx") "A ganglioside GM2 activator that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q60648") AnnotationAssertion(Annotation( "UniProtKB:Q60648") "GM2-AP (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q60648") "SAP-3 (mouse)") @@ -255020,6 +255979,7 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q61584") Annotation( "PRO:DNx") "An RNA-binding protein FXR1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q61584") +AnnotationAssertion(Annotation( "UniProtKB:Q61584") "FXR1P (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mFXR1") AnnotationAssertion(Annotation( "UniProtKB:Q61584") "mFxr1p") AnnotationAssertion( "protein") @@ -255633,10 +256593,10 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q61845") Annotation( "PRO:DNx") "A meiosis expressed gene 1 protein that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q61845") -AnnotationAssertion(Annotation( "UniProtKB:Q61845") "MLZ-278 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMEIG1") AnnotationAssertion(Annotation( "UniProtKB:Q61845") "protein expressed in male leptotene and zygotene spermatocytes 278 (mouse)") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q61845") Annotation( ) "MLZ-278") AnnotationAssertion(Annotation( "UniProtKB:Q61845") Annotation( ) "Meg1") AnnotationAssertion(Annotation( "UniProtKB:Q61845") Annotation( ) "Meig1") AnnotationAssertion( "PR:Q61845") @@ -256084,6 +257044,7 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q62148") Annotation( "PRO:DNx") "A retinal dehydrogenase 2 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q62148") +AnnotationAssertion(Annotation( "UniProtKB:Q62148") "ALDH1A2 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q62148") "RALDH 2 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q62148") "RALDH(II) (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q62148") "RalDH2 (mouse)") @@ -256125,7 +257086,6 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q62158") Annotation( "PRO:DNx") "A zinc finger protein RFP that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q62158") -AnnotationAssertion(Annotation( "UniProtKB:Q62158") "RING-type E3 ubiquitin transferase TRIM27 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mTRIM27") AnnotationAssertion(Annotation( "UniProtKB:Q62158") "ret finger protein (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q62158") "tripartite motif-containing protein 27 (mouse)") @@ -256306,7 +257266,6 @@ AnnotationAssertion(Annotation( "UniProtKB:Q62191") AnnotationAssertion(Annotation( "UniProtKB:Q62191") "52 kDa Ro protein (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q62191") "52 kDa ribonucleoprotein autoantigen Ro/SS-A (mouse)") -AnnotationAssertion(Annotation( "UniProtKB:Q62191") "RING-type E3 ubiquitin transferase TRIM21 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q62191") "Ro(SS-A) (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q62191") "SS-A (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q62191") "Sjoegren syndrome type A antigen (mouse)") @@ -257274,17 +258233,19 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (hepatocyte cell adhesion molecule (mouse)) +# Class: (hepatic and glial cell adhesion molecule (mouse)) -AnnotationAssertion(Annotation( "OMA:Q640R3") Annotation( "PRO:DNx") "A hepatocyte cell adhesion molecule that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q640R3") Annotation( "PRO:DNx") "A hepatic and glial cell adhesion molecule that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q640R3") +AnnotationAssertion(Annotation( "UniProtKB:Q640R3") "glialCAM (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q640R3") "hepatocyte cell adhesion molecule (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mHEPACAM") AnnotationAssertion(Annotation( "UniProtKB:Q640R3") "protein hepaCAM (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q640R3") Annotation( ) "Hepacam") AnnotationAssertion( "PR:Q640R3") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "hepatocyte cell adhesion molecule (mouse)") +AnnotationAssertion(rdfs:label "hepatic and glial cell adhesion molecule (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -258454,7 +259415,7 @@ SubClassOf( ObjectSomeValuesFrom( (xylosyl- and glucuronyltransferase LARGE1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR12270:SF6") Annotation( "PRO:DNx") "A xylosyl- and glucuronyltransferase LARGE1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A xylosyl- and glucuronyltransferase LARGE1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q66PG3") AnnotationAssertion(Annotation( "UniProtKB:Q66PG3") "acetylglucosaminyltransferase-like 1A (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-LARGE1") @@ -258852,7 +259813,7 @@ SubClassOf( ObjectSomeValuesFrom( (kelch-like protein 14 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q69ZK5") Annotation( "PANTHER:PTHR24412:SF111") Annotation( "PRO:DNx") "A kelch-like protein 14 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q69ZK5") Annotation( "PRO:DNx") "A kelch-like protein 14 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q69ZK5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mKLHL14") AnnotationAssertion(Annotation( "UniProtKB:Q69ZK5") "printor (mouse)") @@ -258926,7 +259887,7 @@ SubClassOf( ObjectSomeValuesFrom( (interleukin-10 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q6A2H4") Annotation( "PANTHER:PTHR11585:SF1") Annotation( "PRO:DNx") "An interleukin-10 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q6A2H4") Annotation( "PRO:DNx") "An interleukin-10 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q6A2H4") AnnotationAssertion(Annotation( "UniProtKB:Q6A2H4") "IL-10 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-IL10") @@ -259690,7 +260651,7 @@ SubClassOf( ObjectSomeValuesFrom( (serine protease inhibitor Kazal-type 7 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q6IE32") Annotation( "PANTHER:PTHR21312:SF7") Annotation( "PRO:DNx") "A serine protease inhibitor Kazal-type 7 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q6IE32") Annotation( "PRO:DNx") "A serine protease inhibitor Kazal-type 7 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q6IE32") AnnotationAssertion(Annotation( "UniProtKB:Q6IE32") "ECRG-2 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q6IE32") "esophagus cancer-related gene 2 protein (mouse)") @@ -259894,7 +260855,7 @@ SubClassOf( ObjectSomeValuesFrom( (ubiquitin-like modifier-activating enzyme 5 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10953:SF9") Annotation( "PRO:DNx") "A ubiquitin-like modifier-activating enzyme 5 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A ubiquitin-like modifier-activating enzyme 5 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q6IVA4") AnnotationAssertion(Annotation( "UniProtKB:Q6IVA4") "UFM1-activating enzyme (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-UBA5") @@ -259932,7 +260893,7 @@ SubClassOf( ObjectSomeValuesFrom( (prolyl 3-hydroxylase 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q6JHU8") Annotation( "PANTHER:PTHR14049:SF5") Annotation( "PRO:DNx") "A prolyl 3-hydroxylase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q6JHU8") Annotation( "PRO:DNx") "A prolyl 3-hydroxylase 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q6JHU8") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-P3H1") AnnotationAssertion(Annotation( "UniProtKB:Q6JHU8") "leprecan-1 homolog (chicken)") @@ -260263,7 +261224,7 @@ SubClassOf( ObjectSomeValuesFrom( (inositol polyphosphate 5-phosphatase OCRL (mouse)) -AnnotationAssertion(Annotation( "OMA:Q6NVF0") Annotation( "PANTHER:PTHR11200:SF25") Annotation( "PRO:DNx") "An inositol polyphosphate 5-phosphatase OCRL that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q6NVF0") Annotation( "PRO:DNx") "An inositol polyphosphate 5-phosphatase OCRL that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q6NVF0") AnnotationAssertion(Annotation( "UniProtKB:Q6NVF0") "inositol polyphosphate 5-phosphatase OCRL-1 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mOCRL") @@ -260476,6 +261437,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q6NZI2") "A caveolae-associated protein 1 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q6NZI2 located_in GO:0005654") "Reactome:R-HSA-74981") +AnnotationAssertion(Annotation(rdfs:label "PR:Q6NZI2 located_in GO:0005886") "Reactome:R-HSA-9714278") AnnotationAssertion( "UniProtKB:Q6NZI2") AnnotationAssertion(Annotation( "UniProtKB:Q6NZI2") "cavin-1 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCAVIN1") @@ -260650,16 +261612,16 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L14, mitochondrial (human)) +# Class: (large ribosomal subunit protein uL14m (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q6P1L8") "A 39S ribosomal protein L14, mitochondrial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q6P1L8") "A large ribosomal subunit protein uL14m that is encoded in the genome of human.") AnnotationAssertion(Annotation( "UniProtKB:Q6P1L8") "L32mt (human)") AnnotationAssertion(Annotation( "UniProtKB:Q6P1L8") "MRP-L32 (human)") AnnotationAssertion( "UniProtKB:Q6P1L8") +AnnotationAssertion(Annotation( "UniProtKB:Q6P1L8") "39S ribosomal protein L14, mitochondrial (human)") AnnotationAssertion(Annotation( "UniProtKB:Q6P1L8") "L14mt (human)") AnnotationAssertion(Annotation( "UniProtKB:Q6P1L8") "MRP-L14 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRPL14") -AnnotationAssertion(Annotation( "UniProtKB:Q6P1L8") "mitochondrial large ribosomal subunit protein uL14m (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q6P1L8") "39S ribosomal protein L32, mitochondrial (human)") AnnotationAssertion(Annotation( "UniProtKB:Q6P1L8") Annotation( ) "MRPL14") @@ -260667,7 +261629,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q6P1L8") Annotation( ) "RPML32") AnnotationAssertion( "PR:Q6P1L8") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L14, mitochondrial (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL14m (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -261554,9 +262516,9 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (putative chondrosarcoma-associated gene 1 protein (human)) +# Class: (chondrosarcoma-associated gene 1 protein (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q6PB30") "A putative chondrosarcoma-associated gene 1 protein that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q6PB30") "A chondrosarcoma-associated gene 1 protein that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q6PB30") AnnotationAssertion(Annotation( "UniProtKB:Q6PB30") "CT24.1 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q6PB30") "cancer/testis antigen 24.1 (human)") @@ -261567,7 +262529,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q6PB30") Annotation( ) "CSAGE") AnnotationAssertion( "PR:Q6PB30") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "putative chondrosarcoma-associated gene 1 protein (human)") +AnnotationAssertion(rdfs:label "chondrosarcoma-associated gene 1 protein (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -261961,7 +262923,7 @@ SubClassOf( ObjectSomeValuesFrom( (poly [ADP-ribose] polymerase tankyrase-1 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q6PFX9") Annotation( "PANTHER:PTHR24180:SF307") Annotation( "PRO:DNx") "A poly [ADP-ribose] polymerase tankyrase-1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q6PFX9") Annotation( "PRO:DNx") "A poly [ADP-ribose] polymerase tankyrase-1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q6PFX9") AnnotationAssertion(Annotation( "UniProtKB:Q6PFX9") "ADP-ribosyltransferase diphtheria toxin-like 5 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q6PFX9") "ARTD5 (mouse)") @@ -262312,7 +263274,7 @@ SubClassOf( ObjectSomeValuesFrom( (zona pellucida-binding protein 2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR15443:SF4") Annotation( "PRO:DNx") "A zona pellucida-binding protein 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q6PVW7") Annotation( "PRO:DNx") "A zona pellucida-binding protein 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q6PVW7") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ZPBP2") AnnotationAssertion( "protein") @@ -262328,7 +263290,7 @@ SubClassOf( ObjectSomeValuesFrom( (cysteine protease ATG4B (chicken)) -AnnotationAssertion(Annotation( "OMA:Q6PZ02") Annotation( "PANTHER:PTHR22624:SF18") Annotation( "PRO:DNx") "A cysteine protease ATG4B that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q6PZ02") Annotation( "PRO:DNx") "A cysteine protease ATG4B that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q6PZ02") AnnotationAssertion(Annotation( "UniProtKB:Q6PZ02") "autophagin-2B (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q6PZ02") "autophagy-related cysteine endopeptidase 2B (chicken)") @@ -262811,7 +263773,7 @@ SubClassOf( ObjectSomeValuesFrom( (serine/threonine-protein kinase Sgk1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q6U1I9") Annotation( "PANTHER:PTHR24356:SF106") Annotation( "PRO:DNx") "A serine/threonine-protein kinase Sgk1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A serine/threonine-protein kinase Sgk1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q6U1I9") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SGK1") AnnotationAssertion(Annotation( "UniProtKB:Q6U1I9") "serum/glucocorticoid-regulated kinase 1 (chicken)") @@ -262925,31 +263887,6 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (regenerating islet-derived protein 3-gamma (human)) - -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q6UW15") "A regenerating islet-derived protein 3-gamma that is encoded in the genome of human.") -AnnotationAssertion( "UniProtKB:Q6UW15") -AnnotationAssertion(Annotation( "UniProtKB:Q6UW15") "PAP IB (human)") -AnnotationAssertion(Annotation( "UniProtKB:Q6UW15") "PAP-1B (human)") -AnnotationAssertion(Annotation( "UniProtKB:Q6UW15") "REG III (human)") -AnnotationAssertion(Annotation( "UniProtKB:Q6UW15") "REG-3-gamma (human)") -AnnotationAssertion(Annotation( "UniProtKB:Q6UW15") "Reg III-gamma (human)") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hREG3G") -AnnotationAssertion(Annotation( "UniProtKB:Q6UW15") "pancreatitis-associated protein 1B (human)") -AnnotationAssertion(Annotation( "UniProtKB:Q6UW15") "pancreatitis-associated protein IB (human)") -AnnotationAssertion(Annotation( "UniProtKB:Q6UW15") "regenerating islet-derived protein III-gamma (human)") -AnnotationAssertion( "protein") -AnnotationAssertion(Annotation( "UniProtKB:Q6UW15") Annotation( ) "PAP1B") -AnnotationAssertion(Annotation( "UniProtKB:Q6UW15") Annotation( ) "REG3G") -AnnotationAssertion(Annotation( "UniProtKB:Q6UW15") Annotation( ) "UNQ429/PRO162") -AnnotationAssertion( "PR:Q6UW15") -AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "regenerating islet-derived protein 3-gamma (human)") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (interleukin-27 receptor subunit alpha (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q6UWB1") "An interleukin-27 receptor subunit alpha that is encoded in the genome of human.") @@ -263727,7 +264664,7 @@ SubClassOf( ObjectSomeValuesFrom( (sclerostin domain-containing protein 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q6VYA3") Annotation( "PANTHER:PTHR14903:SF1") Annotation( "PRO:DNx") "A sclerostin domain-containing protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q6VYA3") Annotation( "PRO:DNx") "A sclerostin domain-containing protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q6VYA3") AnnotationAssertion(Annotation( "UniProtKB:Q6VYA3") "Wnt-signaling modulator (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SOSTDC1") @@ -264678,6 +265615,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q6ZWX6") AnnotationAssertion(Annotation( "UniProtKB:Q6ZWX6") "eIF-2-alpha (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q6ZWX6") "eIF-2alpha (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q6ZWX6") "eIF2-alpha (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q6ZWX6") "eukaryotic translation initiation factor 2 subunit alpha (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mEIF2S1") AnnotationAssertion( "protein") @@ -264717,7 +265655,7 @@ SubClassOf( ObjectSomeValuesFrom( (pro-thyrotropin-releasing hormone (chicken)) -AnnotationAssertion(Annotation( "OMA:Q6ZXC3") Annotation( "PANTHER:PTHR17530:SF0") Annotation( "PRO:DNx") "A pro-thyrotropin-releasing hormone that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q6ZXC3") Annotation( "PRO:DNx") "A pro-thyrotropin-releasing hormone that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q6ZXC3") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TRH") AnnotationAssertion(Annotation( "UniProtKB:Q6ZXC3") "pro-TRH (chicken)") @@ -264973,7 +265911,7 @@ SubClassOf( ObjectSomeValuesFrom( (out at first protein homolog (chicken)) -AnnotationAssertion(Annotation( "OMA:Q71SY6") Annotation( "PANTHER:PTHR13423:SF0") Annotation( "PRO:DNx") "An out at first protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "An out at first protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q71SY6") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-OAF") AnnotationAssertion(Annotation( "UniProtKB:Q71SY6") "protein V/NheI 1 (chicken)") @@ -264990,7 +265928,7 @@ SubClassOf( ObjectSomeValuesFrom( (craniofacial development protein 1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR23227:SF14") Annotation( "PRO:DNx") "A craniofacial development protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A craniofacial development protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q75QI0") AnnotationAssertion(Annotation( "UniProtKB:Q75QI0") "bucentaur (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CFDP1") @@ -265111,7 +266049,7 @@ SubClassOf( ObjectSomeValuesFrom( (kinetochore protein NDC80 homolog (chicken)) -AnnotationAssertion(Annotation( "OMA:Q76I89") Annotation( "PANTHER:PTHR10643:SF0") Annotation( "PRO:DNx") "A kinetochore protein NDC80 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q76I89") Annotation( "PRO:DNx") "A kinetochore protein NDC80 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q76I89") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-NDC80") AnnotationAssertion(Annotation( "UniProtKB:Q76I89") "kinetochore protein Hec1 (chicken)") @@ -265154,7 +266092,7 @@ SubClassOf( ObjectSomeValuesFrom( (heparan sulfate 2-O-sulfotransferase 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q76KB1") Annotation( "PANTHER:PTHR12129:SF3") Annotation( "PRO:DNx") "A heparan sulfate 2-O-sulfotransferase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q76KB1") Annotation( "PRO:DNx") "A heparan sulfate 2-O-sulfotransferase 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q76KB1") AnnotationAssertion(Annotation( "UniProtKB:Q76KB1") "cHS2ST (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HS2ST1") @@ -265943,7 +266881,7 @@ SubClassOf( ObjectSomeValuesFrom( (regulator of G-protein signaling 4 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q7SZC6") Annotation( "PANTHER:PTHR10845:SF40") Annotation( "PRO:DNx") "A regulator of G-protein signaling 4 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A regulator of G-protein signaling 4 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q7SZC6") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RGS4") AnnotationAssertion( "protein") @@ -265959,7 +266897,7 @@ SubClassOf( ObjectSomeValuesFrom( (potassium voltage-gated channel subfamily A member 10 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11537:SF44") Annotation( "PRO:DNx") "A voltage-gated potassium channel subunit KCNA10 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q7T199") "A voltage-gated potassium channel subunit KCNA10 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q7T199") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-KCNA10") AnnotationAssertion( "protein") @@ -265975,7 +266913,7 @@ SubClassOf( ObjectSomeValuesFrom( (fibroblast growth factor receptor-like 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q7T2H2") Annotation( "PANTHER:PTHR19890:SF4") Annotation( "PRO:DNx") "A fibroblast growth factor receptor-like 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q7T2H2") Annotation( "PRO:DNx") "A fibroblast growth factor receptor-like 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q7T2H2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-FGFRL1") AnnotationAssertion( "protein") @@ -266667,7 +267605,7 @@ SubClassOf( ObjectSomeValuesFrom( (tumor necrosis factor ligand superfamily member 18 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q7TS55") Annotation( "PANTHER:PTHR15267:SF0") Annotation( "PRO:DNx") "A tumor necrosis factor ligand superfamily member 18 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q7TS55") Annotation( "PRO:DNx") "A tumor necrosis factor ligand superfamily member 18 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q7TS55") AnnotationAssertion(Annotation( "UniProtKB:Q7TS55") "GITR ligand (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q7TS55") "GITRL (mouse)") @@ -266777,7 +267715,7 @@ SubClassOf( ObjectSomeValuesFrom( (protocadherin-8 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q7TSK3") Annotation( "PANTHER:PTHR24028:SF90") Annotation( "PRO:DNx") "A protocadherin-8 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q7TSK3") Annotation( "PRO:DNx") "A protocadherin-8 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q7TSK3") AnnotationAssertion(Annotation( "UniProtKB:Q7TSK3") "arcadlin (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mPCDH8") @@ -266916,19 +267854,19 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L21, mitochondrial (human)) +# Class: (large ribosomal subunit protein bL21m (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q7Z2W9") "A 39S ribosomal protein L21, mitochondrial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q7Z2W9") "A large ribosomal subunit protein bL21m that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q7Z2W9") +AnnotationAssertion(Annotation( "UniProtKB:Q7Z2W9") "39S ribosomal protein L21, mitochondrial (human)") AnnotationAssertion(Annotation( "UniProtKB:Q7Z2W9") "L21mt (human)") AnnotationAssertion(Annotation( "UniProtKB:Q7Z2W9") "MRP-L21 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRPL21") -AnnotationAssertion(Annotation( "UniProtKB:Q7Z2W9") "mitochondrial large ribosomal subunit protein bL21m (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q7Z2W9") Annotation( ) "MRPL21") AnnotationAssertion( "PR:Q7Z2W9") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L21, mitochondrial (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL21m (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -267229,6 +268167,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q7Z5G4") "A golgin subfamily A member 7 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q7Z5G4 located_in GO:1904724") "Reactome:R-HSA-6800164") AnnotationAssertion(Annotation(rdfs:label "PR:Q7Z5G4 located_in GO:0005576") "Reactome:R-HSA-6800449") +AnnotationAssertion(Annotation(rdfs:label "PR:Q7Z5G4 located_in GO:0000139") "Reactome:R-HSA-9647777") AnnotationAssertion( "UniProtKB:Q7Z5G4") AnnotationAssertion(Annotation( "UniProtKB:Q7Z5G4") "Golgi complex-associated protein of 16 kDa (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hGOLGA7") @@ -267599,21 +268538,21 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L55, mitochondrial (human)) +# Class: (large ribosomal subunit protein mL55 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q7Z7F7") "A 39S ribosomal protein L55, mitochondrial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q7Z7F7") "A large ribosomal subunit protein mL55 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q7Z7F7") +AnnotationAssertion(Annotation( "UniProtKB:Q7Z7F7") "39S ribosomal protein L55, mitochondrial (human)") AnnotationAssertion(Annotation( "UniProtKB:Q7Z7F7") "L55mt (human)") AnnotationAssertion(Annotation( "UniProtKB:Q7Z7F7") "MRP-L55 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRPL55") AnnotationAssertion(Annotation( "UniProtKB:Q7Z7F7") "mitochondrial large ribosomal subunit protein bL31m (human)") -AnnotationAssertion(Annotation( "UniProtKB:Q7Z7F7") "mitochondrial large ribosomal subunit protein mL55 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q7Z7F7") Annotation( ) "MRPL55") AnnotationAssertion(Annotation( "UniProtKB:Q7Z7F7") Annotation( ) "UNQ5835/PRO19675") AnnotationAssertion( "PR:Q7Z7F7") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L55, mitochondrial (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein mL55 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -267673,24 +268612,24 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L10, mitochondrial (human)) +# Class: (large ribosomal subunit protein uL10m (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q7Z7H8") "A 39S ribosomal protein L10, mitochondrial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q7Z7H8") "A large ribosomal subunit protein uL10m that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q7Z7H8") +AnnotationAssertion(Annotation( "UniProtKB:Q7Z7H8") "39S ribosomal protein L10, mitochondrial (human)") AnnotationAssertion(Annotation( "UniProtKB:Q7Z7H8") "39S ribosomal protein L8, mitochondrial (human)") AnnotationAssertion(Annotation( "UniProtKB:Q7Z7H8") "L10mt (human)") AnnotationAssertion(Annotation( "UniProtKB:Q7Z7H8") "L8mt (human)") AnnotationAssertion(Annotation( "UniProtKB:Q7Z7H8") "MRP-L10 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q7Z7H8") "MRP-L8 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRPL10") -AnnotationAssertion(Annotation( "UniProtKB:Q7Z7H8") "mitochondrial large ribosomal subunit protein uL10m (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q7Z7H8") Annotation( ) "MRPL10") AnnotationAssertion(Annotation( "UniProtKB:Q7Z7H8") Annotation( ) "MRPL8") AnnotationAssertion(Annotation( "UniProtKB:Q7Z7H8") Annotation( ) "RPML8") AnnotationAssertion( "PR:Q7Z7H8") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L10, mitochondrial (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL10m (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -267739,7 +268678,7 @@ SubClassOf( ObjectSomeValuesFrom( (ankyrin repeat domain-containing protein 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q7ZT11") Annotation( "PANTHER:PTHR24126:SF179") Annotation( "PRO:DNx") "An ankyrin repeat domain-containing protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q7ZT11") Annotation( "PRO:DNx") "An ankyrin repeat domain-containing protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q7ZT11") AnnotationAssertion(Annotation( "UniProtKB:Q7ZT11") "cardiac ankyrin repeat protein (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ANKRD1") @@ -267789,7 +268728,7 @@ SubClassOf( ObjectSomeValuesFrom( (surfeit locus protein 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q800L1") Annotation( "PANTHER:PTHR23427:SF2") Annotation( "PRO:DNx") "A surfeit locus protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q800L1") Annotation( "PRO:DNx") "A surfeit locus protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q800L1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SURF1") AnnotationAssertion( "protein") @@ -267806,7 +268745,7 @@ SubClassOf( ObjectSomeValuesFrom( (coagulation factor IX (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24265:SF65") Annotation( "PRO:DNx") "A coagulation factor IX that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A coagulation factor IX that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q804X6") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-F9") AnnotationAssertion(Annotation( "UniProtKB:Q804X6") "christmas factor (chicken)") @@ -267959,9 +268898,13 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q80TN4") Annotation( "PRO:DNx") "A DnaJ homolog subfamily C member 16 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q80TN4") +AnnotationAssertion(Annotation( "UniProtKB:Q80TN4") "ER-resident protein ERdj8 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q80TN4") "ERdj8 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q80TN4") "endoplasmic reticulum DNA J domain-containing protein 8 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mDNAJC16") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q80TN4") Annotation( ) "Dnajc16") +AnnotationAssertion(Annotation( "UniProtKB:Q80TN4") Annotation( ) "Erdj8") AnnotationAssertion(Annotation( "UniProtKB:Q80TN4") Annotation( ) "Kiaa0962") AnnotationAssertion( "PR:Q80TN4") AnnotationAssertion(rdfs:comment "Category=organism-gene.") @@ -268418,18 +269361,17 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (2'-deoxynucleoside 5'-phosphate N-hydrolase 1 (mouse)) +# Class: (5-hydroxymethyl-dUMP N-hydrolase (mouse)) -AnnotationAssertion(Annotation( "OMA:Q80VJ3") Annotation( "PRO:DAN") "A 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q80VJ3") Annotation( "PRO:DAN") "A 5-hydroxymethyl-dUMP N-hydrolase that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q80VJ3") -AnnotationAssertion(Annotation( "UniProtKB:Q80VJ3") "c-Myc-responsive protein Rcl (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q80VJ3") "2'-deoxynucleoside 5'-phosphate N-hydrolase 1 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mDNPH1") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q80VJ3") Annotation( ) "Dnph1") -AnnotationAssertion(Annotation( "UniProtKB:Q80VJ3") Annotation( ) "Rcl") AnnotationAssertion( "PR:Q80VJ3") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "2'-deoxynucleoside 5'-phosphate N-hydrolase 1 (mouse)") +AnnotationAssertion(rdfs:label "5-hydroxymethyl-dUMP N-hydrolase (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -268697,7 +269639,7 @@ SubClassOf( ObjectSomeValuesFrom( (tumor necrosis factor receptor superfamily member 14 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q80WM9") Annotation( "PANTHER:PTHR23097:SF27") Annotation( "PRO:DNx") "A tumor necrosis factor receptor superfamily member 14 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q80WM9") Annotation( "PRO:DNx") "A tumor necrosis factor receptor superfamily member 14 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q80WM9") AnnotationAssertion(Annotation( "UniProtKB:Q80WM9") "CD270 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q80WM9") "HveA (mouse)") @@ -269081,7 +270023,7 @@ SubClassOf( ObjectSomeValuesFrom( (cystatin-like 1 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q80Y72") Annotation( "PANTHER:PTHR11413:SF9") Annotation( "PRO:DNx") "A cystatin-like 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q80Y72") Annotation( "PRO:DNx") "A cystatin-like 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q80Y72") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCSTL1") AnnotationAssertion( "protein") @@ -269238,6 +270180,8 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q80ZD3") Annotation( "PRO:DNx") "A sodium-independent sulfate anion transporter that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q80ZD3") +AnnotationAssertion(Annotation( "UniProtKB:Q80ZD3") "KBAT (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q80ZD3") "kidney brain anion transporter (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mSLC26A11") AnnotationAssertion(Annotation( "UniProtKB:Q80ZD3") "solute carrier family 26 member 11 (mouse)") AnnotationAssertion( "protein") @@ -269481,7 +270425,7 @@ SubClassOf( ObjectSomeValuesFrom( (cyclin-dependent kinase inhibitor 3 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q810P3") Annotation( "PANTHER:PTHR23339:SF24") Annotation( "PRO:DNx") "A cyclin-dependent kinase inhibitor 3 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q810P3") Annotation( "PRO:DNx") "A cyclin-dependent kinase inhibitor 3 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q810P3") AnnotationAssertion(Annotation( "UniProtKB:Q810P3") "CDK2-associated dual-specificity phosphatase (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q810P3") "kinase-associated phosphatase (mouse)") @@ -269722,6 +270666,7 @@ SubClassOf( ObjectSomeValuesFrom( (nucleoplasmin-2 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q86SE8") "A nucleoplasmin-2 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q86SE8 located_in GO:0005654") "Reactome:R-HSA-9821980") AnnotationAssertion( "UniProtKB:Q86SE8") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNPM2") AnnotationAssertion( "protein") @@ -269928,19 +270873,19 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L52, mitochondrial (human)) +# Class: (large ribosomal subunit protein mL52 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q86TS9") "A 39S ribosomal protein L52, mitochondrial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q86TS9") "A large ribosomal subunit protein mL52 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q86TS9") +AnnotationAssertion(Annotation( "UniProtKB:Q86TS9") "39S ribosomal protein L52, mitochondrial (human)") AnnotationAssertion(Annotation( "UniProtKB:Q86TS9") "L52mt (human)") AnnotationAssertion(Annotation( "UniProtKB:Q86TS9") "MRP-L52 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRPL52") -AnnotationAssertion(Annotation( "UniProtKB:Q86TS9") "mitochondrial large ribosomal subunit protein mL52 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q86TS9") Annotation( ) "MRPL52") AnnotationAssertion( "PR:Q86TS9") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L52, mitochondrial (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein mL52 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -271144,7 +272089,7 @@ SubClassOf( ObjectSomeValuesFrom( (activity-regulated cytoskeleton-associated protein (chicken)) -AnnotationAssertion(Annotation( "OMA:Q8AWC3") Annotation( "PANTHER:PTHR15962:SF0") Annotation( "PRO:DNx") "An activity-regulated cytoskeleton-associated protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8AWC3") Annotation( "PRO:DNx") "An activity-regulated cytoskeleton-associated protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8AWC3") AnnotationAssertion(Annotation( "UniProtKB:Q8AWC3") "ARC/ARG3.1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q8AWC3") "Arg3.1 (chicken)") @@ -271163,7 +272108,7 @@ SubClassOf( ObjectSomeValuesFrom( (alpha-(1,3)-fucosyltransferase 11 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11929:SF3") Annotation( "PRO:DNx") "An alpha-(1,3)-fucosyltransferase 11 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8AWC7") Annotation( "PRO:DNx") "An alpha-(1,3)-fucosyltransferase 11 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8AWC7") AnnotationAssertion(Annotation( "UniProtKB:Q8AWC7") "Fuc-TXI (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q8AWC7") "FucT-XI (chicken)") @@ -271184,7 +272129,7 @@ SubClassOf( ObjectSomeValuesFrom( (diamine acetyltransferase 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q8AXL1") Annotation( "PANTHER:PTHR10545:SF5") Annotation( "PRO:DNx") "A diamine acetyltransferase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8AXL1") Annotation( "PRO:DNx") "A diamine acetyltransferase 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8AXL1") AnnotationAssertion(Annotation( "UniProtKB:Q8AXL1") "SSAT-1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SAT1") @@ -271206,7 +272151,7 @@ SubClassOf( ObjectSomeValuesFrom( (endophilin-A3 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q8AXU9") Annotation( "PANTHER:PTHR10661:SF27") Annotation( "PRO:DNx") "An endophilin-A3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8AXU9") Annotation( "PRO:DNx") "An endophilin-A3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8AXU9") AnnotationAssertion(Annotation( "UniProtKB:Q8AXU9") "SH3 domain-containing GRB2-like protein 3 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q8AXU9") "SH3p13 (chicken)") @@ -271226,7 +272171,7 @@ SubClassOf( ObjectSomeValuesFrom( (endophilin-A1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q8AXV1") Annotation( "PANTHER:PTHR10661:SF28") Annotation( "PRO:DNx") "An endophilin-A1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8AXV1") Annotation( "PRO:DNx") "An endophilin-A1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8AXV1") AnnotationAssertion(Annotation( "UniProtKB:Q8AXV1") "SH3 domain-containing GRB2-like protein 1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q8AXV1") "SH3p4 (chicken)") @@ -271246,7 +272191,7 @@ SubClassOf( ObjectSomeValuesFrom( (muscle, skeletal receptor tyrosine protein kinase (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24416:SF187") Annotation( "PRO:DNx") "A muscle, skeletal receptor tyrosine-protein kinase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8AXY6") Annotation( "PRO:DNx") "A muscle, skeletal receptor tyrosine-protein kinase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8AXY6") AnnotationAssertion(Annotation( "UniProtKB:Q8AXY6") "MuSK (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MUSK") @@ -271265,7 +272210,7 @@ SubClassOf( ObjectSomeValuesFrom( (cadherin-5 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q8AYD0") Annotation( "PANTHER:PTHR24027:SF44") Annotation( "PRO:DNx") "A cadherin-5 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8AYD0") Annotation( "PRO:DNx") "A cadherin-5 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8AYD0") AnnotationAssertion(Annotation( "UniProtKB:Q8AYD0") "VE-cadherin (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CDH5") @@ -271406,7 +272351,7 @@ SubClassOf( ObjectSomeValuesFrom( (isopentenyl-diphosphate Delta-isomerase 2 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q8BFZ6") Annotation( "PANTHER:PTHR10885:SF1") Annotation( "PRO:DNx") "An isopentenyl-diphosphate Delta-isomerase 2 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q8BFZ6") Annotation( "PRO:DNx") "An isopentenyl-diphosphate Delta-isomerase 2 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8BFZ6") AnnotationAssertion(Annotation( "UniProtKB:Q8BFZ6") "IPP isomerase 2 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q8BFZ6") "IPPI2 (mouse)") @@ -272042,19 +272987,19 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (probable asparagine--tRNA ligase, mitochondrial (mouse)) +# Class: (asparaginyl-tRNA synthetase (mouse)) AnnotationAssertion(Annotation( "OMA:Q8BGV0") Annotation( "PRO:DNx") "An asparagine--tRNA ligase, mitochondrial that is encoded in the genome of mouse.") AnnotationAssertion(Annotation( "PRO:DAN") "AsnRS (mouse)") AnnotationAssertion(Annotation( "PRO:DAN") "asparagine--tRNA ligase (mouse)") -AnnotationAssertion(Annotation( "PRO:DAN") "asparaginyl-tRNA synthetase (mouse)") AnnotationAssertion( "UniProtKB:Q8BGV0") +AnnotationAssertion(Annotation( "UniProtKB:Q8BGV0") "asparagine--tRNA ligase, mitochondrial (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mNARS2") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q8BGV0") Annotation( ) "Nars2") AnnotationAssertion( "PR:Q8BGV0") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "probable asparagine--tRNA ligase, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "asparaginyl-tRNA synthetase (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -273208,7 +274153,7 @@ SubClassOf( ObjectSomeValuesFrom( (ER degradation-enhancing alpha-mannosidase-like protein 2 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q8BJT9") Annotation( "PANTHER:PTHR11742:SF10") Annotation( "PRO:DNx") "An ER degradation-enhancing alpha-mannosidase-like protein 2 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q8BJT9") Annotation( "PRO:DNx") "An ER degradation-enhancing alpha-mannosidase-like protein 2 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8BJT9") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mEDEM2") AnnotationAssertion( "protein") @@ -274245,8 +275190,8 @@ AnnotationAssertion( "UniProtKB:Q8BP47") "asparaginyl-tRNA synthetase 1 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mNARS") AnnotationAssertion( "protein") -AnnotationAssertion(Annotation( "UniProtKB:Q8BP47") Annotation( ) "NARS1") AnnotationAssertion(Annotation( "UniProtKB:Q8BP47") Annotation( ) "Nars") +AnnotationAssertion(Annotation( "UniProtKB:Q8BP47") Annotation( ) "Nars1") AnnotationAssertion( "PR:Q8BP47") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "asparagine--tRNA ligase, cytoplasmic (mouse)") @@ -274481,16 +275426,18 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (protein FAM102B (mouse)) +# Class: (EEIG family member 2 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q8BQS4") Annotation( "PRO:DNx") "A protein FAM102B that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q8BQS4") Annotation( "PRO:DNx") "An EEIG family member 2 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8BQS4") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mFAM102B") +AnnotationAssertion(Annotation( "UniProtKB:Q8BQS4") "EEIG2 (mouse)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mEEIG2") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q8BQS4") Annotation( ) "Eeig2") AnnotationAssertion(Annotation( "UniProtKB:Q8BQS4") Annotation( ) "Fam102b") AnnotationAssertion( "PR:Q8BQS4") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "protein FAM102B (mouse)") +AnnotationAssertion(rdfs:label "EEIG family member 2 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -275717,7 +276664,7 @@ SubClassOf( ObjectSomeValuesFrom( (retinoblastoma-binding protein 5 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q8BX09") Annotation( "PANTHER:PTHR12816:SF5") Annotation( "PRO:DNx") "A retinoblastoma-binding protein 5 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q8BX09") Annotation( "PRO:DNx") "A retinoblastoma-binding protein 5 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8BX09") AnnotationAssertion(Annotation( "UniProtKB:Q8BX09") "RBBP-5 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRBBP5") @@ -275912,7 +276859,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein O-glucosyltransferase 1 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q8BYB9") Annotation( "PANTHER:PTHR12203:SF6") Annotation( "PRO:DNx") "A protein O-glucosyltransferase 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q8BYB9") Annotation( "PRO:DNx") "A protein O-glucosyltransferase 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8BYB9") AnnotationAssertion(Annotation( "UniProtKB:Q8BYB9") "CAP10-like 46 kDa protein (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q8BYB9") "KTEL motif-containing protein 1 (mouse)") @@ -276276,7 +277223,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein-glutamine gamma-glutamyltransferase 4 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q8BZH1") Annotation( "PANTHER:PTHR11590:SF11") Annotation( "PRO:DNx") "A protein-glutamine gamma-glutamyltransferase 4 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q8BZH1") Annotation( "PRO:DNx") "A protein-glutamine gamma-glutamyltransferase 4 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8BZH1") AnnotationAssertion(Annotation( "UniProtKB:Q8BZH1") "TGase-4 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q8BZH1") "experimental autoimmune prostatitis antigen 1 (mouse)") @@ -276337,9 +277284,11 @@ AnnotationAssertion(Annotation( "UniProtKB:Q8BZJ7") "DCUN1 domain-containing protein 2 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q8BZJ7") "defective in cullin neddylation protein 1-like protein 2 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mDCUN1D2") +AnnotationAssertion(Annotation( "UniProtKB:Q8BZJ7") "squamous cell carcinoma-related oncogene 2 (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q8BZJ7") Annotation( ) "Dcun1d2") AnnotationAssertion(Annotation( "UniProtKB:Q8BZJ7") Annotation( ) "Dcun1l2") +AnnotationAssertion(Annotation( "UniProtKB:Q8BZJ7") Annotation( ) "SCCRO2") AnnotationAssertion( "PR:Q8BZJ7") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "DCN1-like protein 2 (mouse)") @@ -278399,13 +279348,14 @@ SubClassOf( ObjectSomeValuesFrom( (protein Frey (mouse)) -AnnotationAssertion(Annotation( "OMA:Q8CF31") Annotation( "PRO:DNx") "A protein Frey that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q8CF31") Annotation( "PRO:DNx") "A protein Frey 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8CF31") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mC11orf94") -AnnotationAssertion(Annotation( "UniProtKB:Q8CF31") "protein C11orf94 homolog (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q8CF31") "FREY1 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q8CF31") "Frey regulator of sperm-oocyte fusion 1 (mouse)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mFREY1") AnnotationAssertion( "protein") -AnnotationAssertion(Annotation( "UniProtKB:Q8CF31") Annotation( ) "1700029I15Rik") AnnotationAssertion(Annotation( "UniProtKB:Q8CF31") Annotation( ) "Frey") +AnnotationAssertion(Annotation( "UniProtKB:Q8CF31") Annotation( ) "Frey1") AnnotationAssertion( "PR:Q8CF31") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "protein Frey (mouse)") @@ -278417,7 +279367,7 @@ SubClassOf( ObjectSomeValuesFrom( (zinc finger protein 263 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q8CF60") Annotation( "PANTHER:PTHR23226:SF5") Annotation( "PRO:DNx") "A zinc finger protein 263 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q8CF60") Annotation( "PRO:DNx") "A zinc finger protein 263 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8CF60") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mZNF263") AnnotationAssertion(Annotation( "UniProtKB:Q8CF60") "zinc finger protein FPM315 (mouse)") @@ -278557,7 +279507,9 @@ AnnotationAssertion( "PRO:DNx") Annotation( ) "mSULF2") AnnotationAssertion(Annotation( "UniProtKB:Q8CFG0") "mSulf-2") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q8CFG0") "N-acetylglucosamine-6-sulfatase (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q8CFG0") Annotation( ) "Sulf2") +AnnotationAssertion(Annotation( "UniProtKB:Q8CFG0") "arylsulfatase (mouse)") AnnotationAssertion( "PR:Q8CFG0") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "extracellular sulfatase Sulf-2 (mouse)") @@ -280547,8 +281499,10 @@ AnnotationAssertion(Annotation( "UniProtKB:Q8IWU5") "hSulf-2") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q8IWU5") Annotation( ) "KIAA1247") +AnnotationAssertion(Annotation( "UniProtKB:Q8IWU5") "N-acetylglucosamine-6-sulfatase (human)") AnnotationAssertion(Annotation( "UniProtKB:Q8IWU5") Annotation( ) "SULF2") AnnotationAssertion(Annotation( "UniProtKB:Q8IWU5") Annotation( ) "UNQ559/PRO1120") +AnnotationAssertion(Annotation( "UniProtKB:Q8IWU5") "arylsulfatase (human)") AnnotationAssertion( "PR:Q8IWU5") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "extracellular sulfatase Sulf-2 (human)") @@ -281179,21 +282133,23 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (adhesion G-protein coupled receptor F2 (human)) +# Class: (putative adhesion G protein-coupled receptor F2P (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q8IZF7") "An adhesion G-protein coupled receptor F2 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q8IZF7") "A putative adhesion G protein-coupled receptor F2P that is encoded in the genome of human.") AnnotationAssertion( "DTO:02100130") AnnotationAssertion( "UniProtKB:Q8IZF7") AnnotationAssertion( "G-protein coupled receptor 111 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q8IZF7") "G-protein coupled receptor PGR20 (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q8IZF7") "adhesion G-protein coupled receptor F2 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hADGRF2") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q8IZF7") Annotation( ) "ADGRF2") +AnnotationAssertion(Annotation( "UniProtKB:Q8IZF7") Annotation( ) "ADGRF2P") AnnotationAssertion(Annotation( "UniProtKB:Q8IZF7") Annotation( ) "GPR111") AnnotationAssertion(Annotation( "UniProtKB:Q8IZF7") Annotation( ) "PGR20") AnnotationAssertion( "PR:Q8IZF7") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "adhesion G-protein coupled receptor F2 (human)") +AnnotationAssertion(rdfs:label "putative adhesion G protein-coupled receptor F2P (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -281497,7 +282453,7 @@ SubClassOf( ObjectSomeValuesFrom( (eukaryotic initiation factor 4A-II (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24031:SF2") Annotation( "PRO:DNx") "A eukaryotic initiation factor 4A-II that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8JFP1") Annotation( "PRO:DNx") "A eukaryotic initiation factor 4A-II that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8JFP1") AnnotationAssertion(Annotation( "UniProtKB:Q8JFP1") "ATP-dependent RNA helicase eIF4A-2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-EIF4A2") @@ -281536,7 +282492,7 @@ SubClassOf( ObjectSomeValuesFrom( (WAP four-disulfide core domain protein 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q8JG33") Annotation( "PANTHER:PTHR14308:SF0") Annotation( "PRO:DNx") "A WAP four-disulfide core domain protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8JG33") Annotation( "PRO:DNx") "A WAP four-disulfide core domain protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8JG33") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-WFDC1") AnnotationAssertion(Annotation( "UniProtKB:Q8JG33") "protein ps20 (chicken)") @@ -281554,7 +282510,7 @@ SubClassOf( ObjectSomeValuesFrom( (sulfhydryl oxidase 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q8JGM4") Annotation( "PANTHER:PTHR22897:SF6") Annotation( "PRO:DNx") "A sulfhydryl oxidase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8JGM4") Annotation( "PRO:DNx") "A sulfhydryl oxidase 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8JGM4") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-QSOX1") AnnotationAssertion(Annotation( "UniProtKB:Q8JGM4") "quiescin Q6 (chicken)") @@ -281608,7 +282564,7 @@ SubClassOf( ObjectSomeValuesFrom( (homeodomain-only protein (chicken)) -AnnotationAssertion(Annotation( "OMA:Q8JHU0") Annotation( "PANTHER:PTHR21408:SF0") Annotation( "PRO:DNx") "A homeodomain-only protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8JHU0") Annotation( "PRO:DNx") "A homeodomain-only protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8JHU0") AnnotationAssertion(Annotation( "UniProtKB:Q8JHU0") "Odd homeobox protein 1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HOPX") @@ -281863,7 +282819,7 @@ SubClassOf( ObjectSomeValuesFrom( (tricarboxylate transport protein, mitochondrial (mouse)) -AnnotationAssertion(Annotation( "OMA:Q8JZU2") Annotation( "PANTHER:PTHR24089:SF62") Annotation( "PRO:DNx") "A tricarboxylate transport protein, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q8JZU2") Annotation( "PRO:DNx") "A tricarboxylate transport protein, mitochondrial that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8JZU2") AnnotationAssertion(Annotation( "UniProtKB:Q8JZU2") "CTP (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q8JZU2") "citrate transport protein (mouse)") @@ -282216,8 +283172,10 @@ AnnotationAssertion(Annotation( "UniProtKB:Q8K0V2") "DCUN1 domain-containing protein 3 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q8K0V2") "defective in cullin neddylation protein 1-like protein 3 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mDCUN1D3") +AnnotationAssertion(Annotation( "UniProtKB:Q8K0V2") "squamous cell carcinoma-related oncogene 3 (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q8K0V2") Annotation( ) "Dcun1d3") +AnnotationAssertion(Annotation( "UniProtKB:Q8K0V2") Annotation( ) "SCCRO3") AnnotationAssertion( "PR:Q8K0V2") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "DCN1-like protein 3 (mouse)") @@ -282323,6 +283281,23 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (syntaxin-5 (mouse)) + +AnnotationAssertion(Annotation( "OMA:Q8K1E0") Annotation( "PRO:DNx") "A syntaxin-5 that is encoded in the genome of mouse.") +AnnotationAssertion( "UniProtKB:Q8K1E0") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mSTX5") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q8K1E0") Annotation( ) "Stx5") +AnnotationAssertion(Annotation( "UniProtKB:Q8K1E0") Annotation( ) "Stx5a") +AnnotationAssertion( "PR:Q8K1E0") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "syntaxin-5 (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (protein delta homolog 2 (mouse)) AnnotationAssertion(Annotation( "OMA:Q8K1E3") Annotation( "PRO:DNx") "A protein delta homolog 2 that is encoded in the genome of mouse.") @@ -282760,10 +283735,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L38, mitochondrial (mouse)) +# Class: (large ribosomal subunit protein mL38 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q8K2M0") Annotation( "PRO:DNx") "A 39S ribosomal protein L38, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q8K2M0") Annotation( "PRO:DNx") "A large ribosomal subunit protein mL38 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8K2M0") +AnnotationAssertion(Annotation( "UniProtKB:Q8K2M0") "39S ribosomal protein L38, mitochondrial (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q8K2M0") "L38mt (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q8K2M0") "MRP-L38 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMRPL38") @@ -282771,7 +283747,7 @@ AnnotationAssertion( "UniProtKB:Q8K2M0") Annotation( ) "Mrpl38") AnnotationAssertion( "PR:Q8K2M0") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L38, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein mL38 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -282957,7 +283933,7 @@ SubClassOf( ObjectSomeValuesFrom( (carbonyl reductase [NADPH] 3 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q8K354") Annotation( "PANTHER:PTHR24322:SF19") Annotation( "PRO:DNx") "A carbonyl reductase [NADPH] 3 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q8K354") Annotation( "PRO:DNx") "A carbonyl reductase [NADPH] 3 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8K354") AnnotationAssertion(Annotation( "UniProtKB:Q8K354") "NADPH-dependent carbonyl reductase 3 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCBR3") @@ -283123,6 +284099,9 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q8K409") Annotation( "PRO:DNx") "A DNA polymerase beta that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8K409") +AnnotationAssertion(Annotation( "UniProtKB:Q8K409") "5'-dRP lyase (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q8K409") "5'-deoxyribose-phosphate lyase (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q8K409") "AP lyase (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mPOLB") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q8K409") Annotation( ) "Polb") @@ -283951,6 +284930,7 @@ SubClassOf( ObjectSomeValuesFrom( (small vasohibin-binding protein (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q8N300") "A small vasohibin-binding protein that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q8N300 located_in GO:0005829") "Reactome:R-HSA-9701916") AnnotationAssertion( "UniProtKB:Q8N300") AnnotationAssertion(Annotation( "UniProtKB:Q8N300") "coiled coil domain-containing protein 23 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSVBP") @@ -284007,6 +284987,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q8N371") "A bifunctional peptidase and arginyl-hydroxylase JMJD5 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q8N371 located_in GO:0005654") "Reactome:R-HSA-8862783") +AnnotationAssertion(Annotation(rdfs:label "PR:Q8N371 located_in GO:0005829") "Reactome:R-HSA-9629868") AnnotationAssertion( "UniProtKB:Q8N371") AnnotationAssertion(Annotation( "UniProtKB:Q8N371") "JmjC domain-containing protein 5 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q8N371") "L-arginine (3R)-hydroxylase KDM8 (human)") @@ -284103,6 +285084,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q8N3R9") "A protein PALS1 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q8N3R9 located_in GO:0005886") "Reactome:R-HSA-419969") +AnnotationAssertion(Annotation(rdfs:label "PR:Q8N3R9 located_in GO:0033116") "Reactome:R-HSA-9689606") AnnotationAssertion( "UniProtKB:Q8N3R9") AnnotationAssertion(Annotation( "UniProtKB:Q8N3R9") "MAGUK p55 subfamily member 5 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPALS1") @@ -284542,6 +285524,7 @@ SubClassOf( ObjectSomeValuesFrom( (macoilin (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q8N5G2") "A macoilin that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q8N5G2 located_in GO:0005789") "Reactome:R-HSA-9714351") AnnotationAssertion( "UniProtKB:Q8N5G2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMACO1") AnnotationAssertion(Annotation( "UniProtKB:Q8N5G2") "macoilin-1 (human)") @@ -285585,20 +286568,22 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (ribosome biogenesis protein SPATA5 (human)) +# Class: (ATPase family gene 2 protein homolog A (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q8NB90") "A ribosome biogenesis protein SPATA5 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q8NB90") "An ATPase family gene 2 protein homolog A that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q8NB90") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSPATA5") +AnnotationAssertion(Annotation( "UniProtKB:Q8NB90") "AFG2 AAA ATPase homolog A (human)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hAFG2A") +AnnotationAssertion(Annotation( "UniProtKB:Q8NB90") "ribosome biogenesis protein SPATA5 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q8NB90") "spermatogenesis-associated factor protein (human)") AnnotationAssertion(Annotation( "PRO:DNx") "spermatogenesis-associated protein 5 (human)") AnnotationAssertion( "protein") -AnnotationAssertion(Annotation( "UniProtKB:Q8NB90") Annotation( ) "AFG2") +AnnotationAssertion(Annotation( "UniProtKB:Q8NB90") Annotation( ) "AFG2A") AnnotationAssertion(Annotation( "UniProtKB:Q8NB90") Annotation( ) "SPAF") AnnotationAssertion(Annotation( "UniProtKB:Q8NB90") Annotation( ) "SPATA5") AnnotationAssertion( "PR:Q8NB90") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "ribosome biogenesis protein SPATA5 (human)") +AnnotationAssertion(rdfs:label "ATPase family gene 2 protein homolog A (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -286978,7 +287963,7 @@ SubClassOf( ObjectSomeValuesFrom( (LIM domain kinase 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q8QFP8") Annotation( "PANTHER:PTHR23257:SF94") Annotation( "PRO:DNx") "A LIM domain kinase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8QFP8") Annotation( "PRO:DNx") "A LIM domain kinase 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8QFP8") AnnotationAssertion(Annotation( "UniProtKB:Q8QFP8") "LIMK-1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q8QFP8") "chLIMK1 (chicken)") @@ -286996,7 +287981,7 @@ SubClassOf( ObjectSomeValuesFrom( (small ubiquitin-related modifier 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q8QGH2") Annotation( "PANTHER:PTHR10562:SF8") Annotation( "PRO:DNx") "A small ubiquitin-related modifier 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8QGH2") Annotation( "PRO:DNx") "A small ubiquitin-related modifier 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8QGH2") AnnotationAssertion(Annotation( "UniProtKB:Q8QGH2") "SUMO-1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SUMO1") @@ -287014,7 +287999,7 @@ SubClassOf( ObjectSomeValuesFrom( (cadherin-20 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q8QGH3") Annotation( "PANTHER:PTHR24027:SF108") Annotation( "PRO:DNx") "A cadherin-20 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8QGH3") Annotation( "PRO:DNx") "A cadherin-20 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8QGH3") AnnotationAssertion(Annotation( "UniProtKB:Q8QGH3") "F-cadherin (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q8QGH3") "MN-cadherin (chicken)") @@ -287312,7 +288297,7 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (peptidyl-tRNA hydrolase ICT1, mitochondrial (mouse)) +# Class: (large ribosomal subunit protein mL62 (mouse)) AnnotationAssertion(Annotation( "OMA:Q8R035") Annotation( "PRO:DNx") "An immature colon carcinoma transcript 1 protein that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8R035") @@ -287320,12 +288305,13 @@ AnnotationAssertion(Annotation( "UniProtKB:Q8R035") "MRP-L58 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q8R035") "immature colon carcinoma transcript 1 protein homolog (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMRPL58") +AnnotationAssertion(Annotation( "UniProtKB:Q8R035") "peptidyl-tRNA hydrolase ICT1, mitochondrial (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q8R035") Annotation( ) "Ict1") AnnotationAssertion(Annotation( "UniProtKB:Q8R035") Annotation( ) "Mrpl58") AnnotationAssertion( "PR:Q8R035") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "peptidyl-tRNA hydrolase ICT1, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein mL62 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -287857,19 +288843,20 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (vesicular, overexpressed in cancer, prosurvival protein 1 (mouse)) +# Class: (WW domain binding protein VOPP1 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q8R1C3") Annotation( "PRO:DNx") "A vesicular, overexpressed in cancer, prosurvival protein 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q8R1C3") Annotation( "PRO:DNx") "A WW domain binding protein VOPP1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8R1C3") AnnotationAssertion(Annotation( "UniProtKB:Q8R1C3") "ECop (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q8R1C3") "EGFR-coamplified and overexpressed protein (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mVOPP1") +AnnotationAssertion(Annotation( "UniProtKB:Q8R1C3") "vesicular, overexpressed in cancer, prosurvival protein 1 (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q8R1C3") Annotation( ) "Ecop") AnnotationAssertion(Annotation( "UniProtKB:Q8R1C3") Annotation( ) "Vopp1") AnnotationAssertion( "PR:Q8R1C3") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "vesicular, overexpressed in cancer, prosurvival protein 1 (mouse)") +AnnotationAssertion(rdfs:label "WW domain binding protein VOPP1 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -288077,7 +289064,7 @@ SubClassOf( ObjectSomeValuesFrom( (cell growth regulator with EF hand domain protein 1 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q8R1U2") Annotation( "PRO:DNx") "A cell growth regulator with EF hand domain protein 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A cell growth regulator with EF hand domain protein 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8R1U2") AnnotationAssertion(Annotation( "UniProtKB:Q8R1U2") "cell growth regulatory gene 11 protein (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q8R1U2") "hydrophobestin (mouse)") @@ -289471,6 +290458,7 @@ SubClassOf( ObjectSomeValuesFrom( (Vang-like protein 1 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q8TAA9") "A Vang-like protein 1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q8TAA9 located_in GO:0005886") "Reactome:R-HSA-9714275") AnnotationAssertion( "UniProtKB:Q8TAA9") AnnotationAssertion(Annotation( "UniProtKB:Q8TAA9") "LPP2 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q8TAA9") "Van Gogh-like protein 1 (human)") @@ -289523,6 +290511,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q8TAD4") "A proton-coupled zinc antiporter SLC30A5 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q8TAD4 located_in GO:0030667") "Reactome:R-HSA-437105") +AnnotationAssertion(Annotation(rdfs:label "PR:Q8TAD4 located_in GO:0000139") "Reactome:R-HSA-9817559") AnnotationAssertion( "UniProtKB:Q8TAD4") AnnotationAssertion(Annotation( "UniProtKB:Q8TAD4") "ZnT-5 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q8TAD4") "ZnT-like transporter 1 (human)") @@ -289547,6 +290536,7 @@ SubClassOf( ObjectSomeValuesFrom( (smad nuclear-interacting protein 1 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q8TAD8") "A smad nuclear-interacting protein 1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q8TAD8 located_in GO:0005654") "Reactome:R-HSA-3222315") AnnotationAssertion( "UniProtKB:Q8TAD8") AnnotationAssertion(Annotation( "UniProtKB:Q8TAD8") "FHA domain-containing protein SNIP1 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSNIP1") @@ -289560,9 +290550,9 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (growth arrest and DNA damage-inducible proteins-interacting protein 1 (human)) +# Class: (large ribosomal subunit protein mL64 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q8TAE8") "A growth arrest and DNA damage-inducible proteins-interacting protein 1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q8TAE8") "A large ribosomal subunit protein mL64 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q8TAE8 located_in GO:0005759") "Reactome:R-HSA-5368253") AnnotationAssertion( "UniProtKB:Q8TAE8") AnnotationAssertion(Annotation( "UniProtKB:Q8TAE8") "39S ribosomal protein L59, mitochondrial (human)") @@ -289572,8 +290562,8 @@ AnnotationAssertion(Annotation( "UniProtKB:Q8TAE8") "MRP-L59 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q8TAE8") "PLINP (human)") AnnotationAssertion(Annotation( "UniProtKB:Q8TAE8") "PLINP-1 (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q8TAE8") "growth arrest and DNA damage-inducible proteins-interacting protein 1 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hGADD45GIP1") -AnnotationAssertion(Annotation( "UniProtKB:Q8TAE8") "mitochondrial large ribosomal subunit protein mL64 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q8TAE8") "p53-responsive gene 6 protein (human)") AnnotationAssertion(Annotation( "UniProtKB:Q8TAE8") "papillomavirus L2-interacting nuclear protein 1 (human)") AnnotationAssertion( "protein") @@ -289583,7 +290573,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q8TAE8") Annotation( ) "PRG6") AnnotationAssertion( "PR:Q8TAE8") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "growth arrest and DNA damage-inducible proteins-interacting protein 1 (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein mL64 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -291012,7 +292002,7 @@ SubClassOf( ObjectSomeValuesFrom( (cadherin-related family member 1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24027:SF69") Annotation( "PRO:DNx") "A cadherin-related family member 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8UVJ7") Annotation( "PRO:DNx") "A cadherin-related family member 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8UVJ7") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CDHR1") AnnotationAssertion(Annotation( "UniProtKB:Q8UVJ7") "photoreceptor cadherin (chicken)") @@ -291036,6 +292026,7 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q8VBT0") Annotation( "PRO:DNx") "A thioredoxin-related transmembrane protein 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q8VBT0") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mTMX1") +AnnotationAssertion(Annotation( "UniProtKB:Q8VBT0") "protein disulfide-isomerase TMX1 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q8VBT0") "thioredoxin domain-containing protein 1 (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q8VBT0") Annotation( ) "Tmx1") @@ -292016,6 +293007,23 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (ETS-related transcription factor Elf-5 (mouse)) + +AnnotationAssertion(Annotation( "OMA:Q8VDK3") Annotation( "PRO:DNx") "An ETS-related transcription factor Elf-5 that is encoded in the genome of mouse.") +AnnotationAssertion( "UniProtKB:Q8VDK3") +AnnotationAssertion(Annotation( "UniProtKB:Q8VDK3") "E74-like factor 5 (mouse)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mELF5") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q8VDK3") Annotation( ) "Elf5") +AnnotationAssertion( "PR:Q8VDK3") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "ETS-related transcription factor Elf-5 (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (ADP-dependent glucokinase (mouse)) AnnotationAssertion(Annotation( "OMA:Q8VDL4") Annotation( "PRO:DNx") "An ADP-dependent glucokinase that is encoded in the genome of mouse.") @@ -293214,18 +294222,21 @@ AnnotationAssertion(rdfs:label "cance SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (cotranscriptional regulator FAM172A (human)) +# Class: (cotranscriptional regulator ARB2A (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q8WUF8") "A cotranscriptional regulator FAM172A that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q8WUF8") "A cotranscriptional regulator ARB2A that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q8WUF8") -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hFAM172A") +AnnotationAssertion(Annotation( "UniProtKB:Q8WUF8") "ARB2 cotranscriptional regulator A (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q8WUF8") "cotranscriptional regulator FAM172A (human)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hARB2A") AnnotationAssertion(Annotation( "UniProtKB:Q8WUF8") "protein FAM172A (human)") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q8WUF8") Annotation( ) "ARB2A") AnnotationAssertion(Annotation( "UniProtKB:Q8WUF8") Annotation( ) "C5orf21") AnnotationAssertion(Annotation( "UniProtKB:Q8WUF8") Annotation( ) "FAM172A") AnnotationAssertion( "PR:Q8WUF8") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "cotranscriptional regulator FAM172A (human)") +AnnotationAssertion(rdfs:label "cotranscriptional regulator ARB2A (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -294698,7 +295709,7 @@ SubClassOf( ObjectSomeValuesFrom( (72 kDa type IV collagenase (chicken)) -AnnotationAssertion(Annotation( "OMA:Q90611") Annotation( "PANTHER:PTHR10201:SF29") Annotation( "PRO:DNx") "A 72 kDa type IV collagenase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90611") Annotation( "PRO:DNx") "A 72 kDa type IV collagenase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90611") AnnotationAssertion(Annotation( "UniProtKB:Q90611") "72 kDa gelatinase (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q90611") "MMP-2 (chicken)") @@ -294736,7 +295747,7 @@ SubClassOf( ObjectSomeValuesFrom( (neuronal regeneration-related protein (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A neuronal regeneration-related protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90667") Annotation( "PRO:DNx") "A neuronal regeneration-related protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90667") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-NREP") AnnotationAssertion(Annotation( "UniProtKB:Q90667") "neuronal protein 3.1 (chicken)") @@ -294773,7 +295784,7 @@ SubClassOf( ObjectSomeValuesFrom( (activin receptor type-2B (chicken)) -AnnotationAssertion(Annotation( "PRO:CNA") "An activin receptor type-2B that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90670") Annotation( "PRO:DNx") "An activin receptor type-2B that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90670") AnnotationAssertion(Annotation( "UniProtKB:Q90670") "ACTR-IIB (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q90670") "activin receptor type IIB (chicken)") @@ -294791,7 +295802,7 @@ SubClassOf( ObjectSomeValuesFrom( (lutropin-choriogonadotropic hormone receptor (chicken)) -AnnotationAssertion(Annotation( "PRO:WCB") "A lutropin-choriogonadotropic hormone receptor that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90674") Annotation( "PRO:DNx") "A lutropin-choriogonadotropic hormone receptor that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90674") AnnotationAssertion(Annotation( "UniProtKB:Q90674") "LH/CG-R (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q90674") "LSH-R (chicken)") @@ -294847,7 +295858,7 @@ SubClassOf( ObjectSomeValuesFrom( (cell division control protein 42 homolog (chicken)) -AnnotationAssertion(Annotation( "OMA:Q90694") Annotation( "PANTHER:PTHR24072:SF286") Annotation( "PRO:DNx") "A cell division control protein 42 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90694") Annotation( "PRO:DNx") "A cell division control protein 42 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90694") AnnotationAssertion(Annotation( "UniProtKB:Q90694") "G25K GTP-binding protein (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CDC42") @@ -294885,7 +295896,7 @@ SubClassOf( ObjectSomeValuesFrom( (fibroblast growth factor 8 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q90722") Annotation( "PANTHER:PTHR11486:SF2") Annotation( "PRO:DNx") "A fibroblast growth factor 8 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90722") Annotation( "PRO:DNx") "A fibroblast growth factor 8 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90722") AnnotationAssertion(Annotation( "UniProtKB:Q90722") "FGF-8 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-FGF8") @@ -294917,11 +295928,10 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (cadherin-7 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q90763") Annotation( "PANTHER:PTHR24027:SF106") Annotation( "PRO:DNx") "A cadherin-7 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90763") Annotation( "PRO:DNx") "A cadherin-7 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90763") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CDH7") AnnotationAssertion( "protein") @@ -294951,9 +295961,26 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (protein NEL (chicken)) + +AnnotationAssertion(Annotation( "OMA:Q90827") Annotation( "PRO:DNx") "A protein kinase C-binding protein NELL2 that is encoded in the genome of chicken.") +AnnotationAssertion( "UniProtKB:Q90827") +AnnotationAssertion(Annotation( "UniProtKB:Q90827") "93 kDa protein (chicken)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-NELL2") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q90827") Annotation( ) "NEL") +AnnotationAssertion( "PR:Q90827") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "protein NEL (chicken)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (cytoplasmic dynein 1 light intermediate chain 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q90828") Annotation( "PANTHER:PTHR12688:SF0") Annotation( "PRO:DNx") "A cytoplasmic dynein 1 light intermediate chain 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90828") Annotation( "PRO:DNx") "A cytoplasmic dynein 1 light intermediate chain 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90828") AnnotationAssertion(Annotation( "UniProtKB:Q90828") "DLC-A (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q90828") "LIC57/59 (chicken)") @@ -294993,7 +296020,7 @@ SubClassOf( ObjectSomeValuesFrom( (interferon regulatory factor 8 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q90871") Annotation( "PANTHER:PTHR11949:SF7") Annotation( "PRO:DNx") "An interferon regulatory factor 8 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90871") Annotation( "PRO:DNx") "An interferon regulatory factor 8 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90871") AnnotationAssertion(Annotation( "UniProtKB:Q90871") "IRF-8 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-IRF8") @@ -295034,7 +296061,7 @@ SubClassOf( ObjectSomeValuesFrom( (ubiquitin-conjugating enzyme E2 variant 1 (chicken)) -AnnotationAssertion(Annotation( "TLR:AMM") "A ubiquitin-conjugating enzyme E2 variant 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90879") Annotation( "PRO:DNx") "A ubiquitin-conjugating enzyme E2 variant 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90879") AnnotationAssertion(Annotation( "UniProtKB:Q90879") "CROC-1B (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q90879") "UEV-1 (chicken)") @@ -295052,7 +296079,7 @@ SubClassOf( ObjectSomeValuesFrom( (transcription factor MafG (chicken)) -AnnotationAssertion(Annotation( "OMA:Q90889") Annotation( "PANTHER:PTHR10129:SF15") Annotation( "PRO:DNx") "A transcription factor MafG that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90889") Annotation( "PRO:DNx") "A transcription factor MafG that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90889") AnnotationAssertion(Annotation( "UniProtKB:Q90889") "V-maf musculoaponeurotic fibrosarcoma oncogene homolog G (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MAFG") @@ -295069,7 +296096,7 @@ SubClassOf( ObjectSomeValuesFrom( (lymphocyte antigen 86 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR20838:SF0") Annotation( "PRO:DNx") "A lymphocyte antigen 86 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A lymphocyte antigen 86 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90890") AnnotationAssertion(Annotation( "UniProtKB:Q90890") "Ly-86 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-LY86") @@ -295088,7 +296115,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein polybromo-1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR16062:SF5") Annotation( "PRO:DNx") "A protein polybromo-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein polybromo-1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90941") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PBRM1") AnnotationAssertion( "protein") @@ -295124,7 +296151,7 @@ SubClassOf( ObjectSomeValuesFrom( (versican core protein (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR22804:SF6") Annotation( "PRO:DNx") "A versican core protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A versican core protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90953") AnnotationAssertion(Annotation( "UniProtKB:Q90953") "PG-M (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-VCAN") @@ -295181,7 +296208,7 @@ SubClassOf( ObjectSomeValuesFrom( (stathmin-2 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q90987") Annotation( "PANTHER:PTHR10104:SF7") Annotation( "PRO:DNx") "A stathmin-2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90987") Annotation( "PRO:DNx") "A stathmin-2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90987") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-STMN2") AnnotationAssertion(Annotation( "UniProtKB:Q90987") "protein SCG10 (chicken)") @@ -295200,7 +296227,7 @@ SubClassOf( ObjectSomeValuesFrom( (transferrin receptor protein 1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10404:SF26") Annotation( "PRO:DNx") "A transferrin receptor protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:WCB") "A transferrin receptor protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90997") AnnotationAssertion(Annotation( "UniProtKB:Q90997") "TR (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q90997") "TfR (chicken)") @@ -295220,7 +296247,7 @@ SubClassOf( ObjectSomeValuesFrom( (ATP-dependent RNA helicase DDX1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q90WU3") Annotation( "PANTHER:PTHR24031:SF155") Annotation( "PRO:DNx") "An ATP-dependent RNA helicase DDX1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90WU3") Annotation( "PRO:DNx") "An ATP-dependent RNA helicase DDX1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90WU3") AnnotationAssertion(Annotation( "UniProtKB:Q90WU3") "DEAD box protein 1 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-DDX1") @@ -295237,7 +296264,7 @@ SubClassOf( ObjectSomeValuesFrom( (suppressor of cytokine signaling 3 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q90X67") Annotation( "PANTHER:PTHR10385:SF4") Annotation( "PRO:DNx") "A suppressor of cytokine signaling 3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90X67") Annotation( "PRO:DNx") "A suppressor of cytokine signaling 3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90X67") AnnotationAssertion(Annotation( "UniProtKB:Q90X67") "SOCS-3 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SOCS3") @@ -295254,7 +296281,7 @@ SubClassOf( ObjectSomeValuesFrom( (testin (chicken)) -AnnotationAssertion(Annotation( "OMA:Q90YH9") Annotation( "PANTHER:PTHR24211:SF81") Annotation( "PRO:DNx") "A testin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90YH9") Annotation( "PRO:DNx") "A testin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90YH9") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TES") AnnotationAssertion( "protein") @@ -295270,7 +296297,7 @@ SubClassOf( ObjectSomeValuesFrom( (interleukin-6 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11457:SF0") Annotation( "PRO:DNx") "An interleukin-6 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90YI0") Annotation( "PRO:DNx") "An interleukin-6 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90YI0") AnnotationAssertion(Annotation( "UniProtKB:Q90YI0") "ChIL-6 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q90YI0") "IL-6 (chicken)") @@ -295286,6 +296313,24 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (ovocalyxin-32 (chicken)) + +AnnotationAssertion(Annotation( "OMA:Q90YI1") Annotation( "PRO:DNx") "A retinoic acid receptor responder protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion( "UniProtKB:Q90YI1") +AnnotationAssertion(Annotation( "UniProtKB:Q90YI1") "32 kDa eggshell matrix protein (chicken)") +AnnotationAssertion(Annotation( "UniProtKB:Q90YI1") "OCX-32 (chicken)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-RARRES1") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q90YI1") Annotation( ) "RARRES1") +AnnotationAssertion( "PR:Q90YI1") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "ovocalyxin-32 (chicken)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (anti-apoptotic protein NR13 (chicken)) AnnotationAssertion(Annotation( "OMA:Q90ZN1") Annotation( "PRO:DNx") "A Bcl-2-like protein 10 that is encoded in the genome of chicken.") @@ -295305,7 +296350,7 @@ SubClassOf( ObjectSomeValuesFrom( (sonic hedgehog protein (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11889:SF16") Annotation( "PRO:DNx") "A sonic hedgehog protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q91035") Annotation( "PRO:DNx") "A sonic hedgehog protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q91035") AnnotationAssertion(Annotation( "UniProtKB:Q91035") "Shh unprocessed N-terminal signaling and C-terminal autoprocessing domains (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q91035") "ShhNC (chicken)") @@ -295323,7 +296368,7 @@ SubClassOf( ObjectSomeValuesFrom( (NT-3 growth factor receptor (chicken)) -AnnotationAssertion(Annotation( "OMA:Q91044") Annotation( "PANTHER:PTHR24416:SF284") Annotation( "PRO:DNx") "An NT-3 growth factor receptor that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q91044") Annotation( "PRO:DNx") "An NT-3 growth factor receptor that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q91044") AnnotationAssertion(Annotation( "UniProtKB:Q91044") "Trk-C (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q91044") "TrkC tyrosine kinase (chicken)") @@ -295343,7 +296388,7 @@ SubClassOf( ObjectSomeValuesFrom( (inactive tyrosine-protein kinase 7 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR24418:SF281") Annotation( "PRO:DNx") "An inactive tyrosine-protein kinase 7 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q91048") Annotation( "PRO:DNx") "An inactive tyrosine-protein kinase 7 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q91048") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PTK7") AnnotationAssertion(Annotation( "UniProtKB:Q91048") "kinase-like protein (chicken)") @@ -295384,7 +296429,7 @@ SubClassOf( ObjectSomeValuesFrom( (BDNF/NT-3 growth factors receptor (chicken)) -AnnotationAssertion(Annotation( "OMA:Q91987") Annotation( "PANTHER:PTHR24416:SF336") Annotation( "PRO:DNx") "A BDNF/NT-3 growth factors receptor that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q91987") Annotation( "PRO:DNx") "A BDNF/NT-3 growth factors receptor that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q91987") AnnotationAssertion(Annotation( "UniProtKB:Q91987") "Trk-B (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q91987") "TrkB tyrosine kinase (chicken)") @@ -296503,6 +297548,7 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q91WS0") Annotation( "PRO:DNx") "A CDGSH iron-sulfur domain-containing protein 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q91WS0") AnnotationAssertion(Annotation( "UniProtKB:Q91WS0") "MitoNEET (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q91WS0") "cysteine transaminase CISD1 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCISD1") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q91WS0") Annotation( ) "Cisd1") @@ -296608,20 +297654,23 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (neutral and basic amino acid transport protein rBAT (mouse)) +# Class: (amino acid transporter heavy chain SLC3A1 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q91WV7") Annotation( "PANTHER:PTHR10357:SF73") Annotation( "PRO:DNx") "A neutral and basic amino acid transport protein rBAT that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q91WV7") Annotation( "PRO:DNx") "An amino acid transporter heavy chain SLC3A1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q91WV7") +AnnotationAssertion(Annotation( "UniProtKB:Q91WV7") "D2 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q91WV7") "NBAT (mouse)") -AnnotationAssertion(Annotation( "UniProtKB:Q91WV7") "b(0,+)-type amino acid transport protein (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q91WV7") "b(0,+)-type amino acid transporter-related heavy chain (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mSLC3A1") +AnnotationAssertion(Annotation( "UniProtKB:Q91WV7") "neutral and basic amino acid transport protein (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q91WV7") "rBAT (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q91WV7") "solute carrier family 3 member 1 (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q91WV7") Annotation( ) "Nbat") AnnotationAssertion(Annotation( "UniProtKB:Q91WV7") Annotation( ) "Slc3a1") AnnotationAssertion( "PR:Q91WV7") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "neutral and basic amino acid transport protein rBAT (mouse)") +AnnotationAssertion(rdfs:label "amino acid transporter heavy chain SLC3A1 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -297347,7 +298396,10 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q91YN5") Annotation( "PRO:DNx") "A UDP-N-acetylhexosamine pyrophosphorylase that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q91YN5") +AnnotationAssertion(Annotation( "UniProtKB:Q91YN5") "UDP-N-acetylgalactosamine pyrophosphorylase (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q91YN5") "UDP-N-acetylglucosamine pyrophosphorylase (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mUAP1") +AnnotationAssertion(Annotation( "UniProtKB:Q91YN5") "protein-pyrophosphorylation enzyme (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q91YN5") Annotation( ) "Uap1") AnnotationAssertion( "PR:Q91YN5") @@ -298034,7 +299086,7 @@ SubClassOf( ObjectSomeValuesFrom( (transcription factor VBP (chicken)) -AnnotationAssertion(Annotation( "OMA:Q92172") Annotation( "PANTHER:PTHR11988:SF6") Annotation( "PRO:DNx") "A thyrotroph embryonic factor that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q92172") Annotation( "PRO:DNx") "A thyrotroph embryonic factor that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q92172") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TEF") AnnotationAssertion(Annotation( "UniProtKB:Q92172") "thyrotroph embryonic factor homolog (chicken)") @@ -298053,7 +299105,7 @@ SubClassOf( ObjectSomeValuesFrom( (calpain-2 catalytic subunit (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10183:SF52") Annotation( "PRO:DNx") "A calpain-2 catalytic subunit that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q92178") Annotation( "PRO:DNx") "A calpain-2 catalytic subunit that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q92178") AnnotationAssertion(Annotation( "UniProtKB:Q92178") "CANP 2 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q92178") "M-calpain (chicken)") @@ -298075,7 +299127,7 @@ SubClassOf( ObjectSomeValuesFrom( (carbohydrate sulfotransferase 3 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10704:SF2") Annotation( "PRO:DNx") "A carbohydrate sulfotransferase 3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q92179") Annotation( "PRO:DNx") "A carbohydrate sulfotransferase 3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q92179") AnnotationAssertion(Annotation( "UniProtKB:Q92179") "C6ST (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q92179") "C6ST-1 (chicken)") @@ -298095,7 +299147,7 @@ SubClassOf( ObjectSomeValuesFrom( (beta-galactoside alpha-2,6-sialyltransferase 1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR13713:SF9") Annotation( "PRO:DNx") "A beta-galactoside alpha-2,6-sialyltransferase 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q92182") Annotation( "PRO:DNx") "A beta-galactoside alpha-2,6-sialyltransferase 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q92182") AnnotationAssertion(Annotation( "UniProtKB:Q92182") "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,6-sialyltransferase 1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q92182") "ST6Gal I (chicken)") @@ -298139,7 +299191,7 @@ SubClassOf( ObjectSomeValuesFrom( (alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR13713:SF2") Annotation( "PRO:DNx") "An alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q92184") Annotation( "PRO:DNx") "An alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q92184") AnnotationAssertion(Annotation( "UniProtKB:Q92184") "GalNAc alpha-2,6-sialyltransferase II (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q92184") "SIAT7-B (chicken)") @@ -298874,7 +299926,7 @@ SubClassOf( ObjectSomeValuesFrom( (CUB and sushi domain-containing protein 1 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q923L3") Annotation( "PANTHER:PTHR19325:SF44") Annotation( "PRO:DNx") "A CUB and sushi domain-containing protein 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q923L3") Annotation( "PRO:DNx") "A CUB and sushi domain-containing protein 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q923L3") AnnotationAssertion(Annotation( "UniProtKB:Q923L3") "CUB and sushi multiple domains protein 1 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCSMD1") @@ -298891,7 +299943,7 @@ SubClassOf( ObjectSomeValuesFrom( (collagen alpha-1(XX) chain (mouse)) -AnnotationAssertion(Annotation( "OMA:Q923P0") Annotation( "PANTHER:PTHR24023:SF50") Annotation( "PRO:DNx") "A collagen alpha-1(XX) chain that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q923P0") Annotation( "PRO:DNx") "A collagen alpha-1(XX) chain that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q923P0") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCOL20A1") AnnotationAssertion( "protein") @@ -299705,6 +300757,7 @@ SubClassOf( ObjectSomeValuesFrom( (nuclear pore complex-interacting protein family member B3 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q92617") "A nuclear pore complex-interacting protein family member B3 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q92617 located_in GO:0005635") "Reactome:R-HSA-9731050") AnnotationAssertion( "UniProtKB:Q92617") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNPIPB3") AnnotationAssertion( "nuclear pore complex-interacting protein-like 3 (human)") @@ -300012,6 +301065,7 @@ SubClassOf( ObjectSomeValuesFrom( "PMID:11331617") "A CREB-binding protein that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q92793 located_in GO:0005654") "Reactome:R-HSA-193545") +AnnotationAssertion(Annotation(rdfs:label "PR:Q92793 located_in GO:0005829") "Reactome:R-HSA-9756493") AnnotationAssertion( "UniProtKB:Q92793") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCREBBP") AnnotationAssertion(Annotation( "UniProtKB:Q92793") "histone lysine acetyltransferase CREBBP (human)") @@ -300451,6 +301505,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q92890") "A ubiquitin recognition factor in ER-associated degradation protein 1 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q92890 located_in GO:0005654") "Reactome:R-HSA-5654993") +AnnotationAssertion(Annotation(rdfs:label "PR:Q92890 located_in GO:0005829") "Reactome:R-HSA-9668519") AnnotationAssertion( "UniProtKB:Q92890") AnnotationAssertion(Annotation( "UniProtKB:Q92890") "UB fusion protein 1 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hUFD1") @@ -300754,6 +301809,7 @@ SubClassOf( ObjectSomeValuesFrom( (stathmin-2 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q93045") "A stathmin-2 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q93045 located_in GO:0005829") "Reactome:R-HSA-9696513") AnnotationAssertion( "UniProtKB:Q93045") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSTMN2") AnnotationAssertion(Annotation( "UniProtKB:Q93045") "protein SCG10 (human)") @@ -301726,21 +302782,22 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (vesicular, overexpressed in cancer, prosurvival protein 1 (human)) +# Class: (WW domain binding protein VOPP1 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q96AW1") "A vesicular, overexpressed in cancer, prosurvival protein 1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q96AW1") "A WW domain binding protein VOPP1 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q96AW1") AnnotationAssertion(Annotation( "UniProtKB:Q96AW1") "EGFR-coamplified and overexpressed protein (human)") AnnotationAssertion(Annotation( "UniProtKB:Q96AW1") "glioblastoma-amplified secreted protein (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hVOPP1") AnnotationAssertion(Annotation( "UniProtKB:Q96AW1") "putative NF-kappa-B-activating protein 055N (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q96AW1") "vesicular, overexpressed in cancer, prosurvival protein 1 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q96AW1") Annotation( ) "ECOP") AnnotationAssertion(Annotation( "UniProtKB:Q96AW1") Annotation( ) "GASP") AnnotationAssertion(Annotation( "UniProtKB:Q96AW1") Annotation( ) "VOPP1") AnnotationAssertion( "PR:Q96AW1") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "vesicular, overexpressed in cancer, prosurvival protein 1 (human)") +AnnotationAssertion(rdfs:label "WW domain binding protein VOPP1 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -301951,7 +303008,7 @@ AnnotationAssertion(Annotation( "Reactome:R-HSA-975976") AnnotationAssertion( "UniProtKB:Q96BH1") AnnotationAssertion(Annotation( "UniProtKB:Q96BH1") "RING finger protein 25 (human)") -AnnotationAssertion(Annotation( "UniProtKB:Q96BH1") "RING-type E3 ubiquitin transferase RNF25 (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q96BH1") "RING finger protein AO7 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRNF25") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q96BH1") Annotation( ) "RNF25") @@ -302375,7 +303432,6 @@ AnnotationAssertion(Annotation( "UniProtKB:Q96CS3") AnnotationAssertion(Annotation( "UniProtKB:Q96CS3") "UBX domain-containing protein 3B (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hFAF2") -AnnotationAssertion(Annotation( "UniProtKB:Q96CS3") "protein ETEA (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q96CS3") Annotation( ) "ETEA") AnnotationAssertion(Annotation( "UniProtKB:Q96CS3") Annotation( ) "FAF2") @@ -302612,6 +303668,7 @@ SubClassOf( ObjectSomeValuesFrom( (RNA-binding protein Musashi homolog 2 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q96DH6") "An RNA-binding protein Musashi homolog 2 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q96DH6 located_in GO:0005829") "Reactome:R-HSA-9715155") AnnotationAssertion( "UniProtKB:Q96DH6") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMSI2") AnnotationAssertion(Annotation( "UniProtKB:Q96DH6") "musashi-2 (human)") @@ -302767,20 +303824,20 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L38, mitochondrial (human)) +# Class: (large ribosomal subunit protein mL38 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q96DV4") "A 39S ribosomal protein L38, mitochondrial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q96DV4") "A large ribosomal subunit protein mL38 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q96DV4") +AnnotationAssertion(Annotation( "UniProtKB:Q96DV4") "39S ribosomal protein L38, mitochondrial (human)") AnnotationAssertion(Annotation( "UniProtKB:Q96DV4") "L38mt (human)") AnnotationAssertion(Annotation( "UniProtKB:Q96DV4") "MRP-L38 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRPL38") -AnnotationAssertion(Annotation( "UniProtKB:Q96DV4") "mitochondrial large ribosomal subunit protein mL38 (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q96DV4") Annotation( ) "HSPC262") AnnotationAssertion(Annotation( "UniProtKB:Q96DV4") Annotation( ) "MRPL38") AnnotationAssertion( "PR:Q96DV4") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L38, mitochondrial (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein mL38 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -302885,6 +303942,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q96E11") AnnotationAssertion(Annotation( "UniProtKB:Q96E11") "RRF (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRRF") +AnnotationAssertion(Annotation( "UniProtKB:Q96E11") "mtRRF (human)") AnnotationAssertion(Annotation( "UniProtKB:Q96E11") "ribosome-releasing factor, mitochondrial (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q96E11") Annotation( ) "MRRF") @@ -304101,20 +305159,20 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (probable asparagine--tRNA ligase, mitochondrial (human)) +# Class: (asparaginyl-tRNA synthetase (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q96I59") "An asparagine--tRNA ligase, mitochondrial that is encoded in the genome of human.") AnnotationAssertion(Annotation( "PRO:DAN") "AsnRS (human)") AnnotationAssertion(Annotation( "PRO:DAN") "asparagine--tRNA ligase (human)") -AnnotationAssertion(Annotation( "PRO:DAN") "asparaginyl-tRNA synthetase (human)") AnnotationAssertion( "UniProtKB:Q96I59") +AnnotationAssertion(Annotation( "UniProtKB:Q96I59") "asparagine--tRNA ligase, mitochondrial (human)") AnnotationAssertion(Annotation( "PRO:DAN") "asparaginyl-tRNA synthetase, mitochondrial (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hNARS2") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q96I59") Annotation( ) "NARS2") AnnotationAssertion( "PR:Q96I59") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "probable asparagine--tRNA ligase, mitochondrial (human)") +AnnotationAssertion(rdfs:label "asparaginyl-tRNA synthetase (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -305628,6 +306686,7 @@ SubClassOf( ObjectSomeValuesFrom( (coiled-coil domain-containing protein 115 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q96NT0") "A coiled-coil domain-containing protein 115 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q96NT0 located_in GO:0005789") "Reactome:R-HSA-9714329") AnnotationAssertion( "UniProtKB:Q96NT0") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCCDC115") AnnotationAssertion( "protein") @@ -306607,7 +307666,7 @@ SubClassOf( ObjectSomeValuesFrom( (melanocyte protein PMEL (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11861:SF1") Annotation( "PRO:DNx") "A melanocyte protein Pmel 17 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q98917") Annotation( "PRO:DNx") "A melanocyte protein Pmel 17 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q98917") AnnotationAssertion(Annotation( "UniProtKB:Q98917") "115 kDa melanosomal matrix protein (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PMEL") @@ -306630,7 +307689,7 @@ SubClassOf( ObjectSomeValuesFrom( (limbic system-associated membrane protein (chicken)) -AnnotationAssertion(Annotation( "OMA:Q98919") Annotation( "PANTHER:PTHR19831:SF10") Annotation( "PRO:DNx") "A limbic system-associated membrane protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q98919") Annotation( "PRO:DNx") "A limbic system-associated membrane protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q98919") AnnotationAssertion(Annotation( "UniProtKB:Q98919") "CHLAMP G19-isoform (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q98919") "E19S (chicken)") @@ -306648,7 +307707,7 @@ SubClassOf( ObjectSomeValuesFrom( (interferon regulatory factor 2 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q98925") Annotation( "PANTHER:PTHR11949:SF3") Annotation( "PRO:DNx") "An interferon regulatory factor 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q98925") Annotation( "PRO:DNx") "An interferon regulatory factor 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q98925") AnnotationAssertion(Annotation( "UniProtKB:Q98925") "IRF-2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-IRF2") @@ -306682,7 +307741,7 @@ SubClassOf( ObjectSomeValuesFrom( (Indian hedgehog protein (chicken)) -AnnotationAssertion(Annotation( "OMA:Q98938") Annotation( "PANTHER:PTHR11889:SF17") Annotation( "PRO:DNx") "An Indian hedgehog protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q98938") Annotation( "PRO:DNx") "An Indian hedgehog protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q98938") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-IHH") AnnotationAssertion( "protein") @@ -306713,7 +307772,7 @@ SubClassOf( ObjectSomeValuesFrom( (proteasomal ubiquitin receptor ADRM1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q98SH3") Annotation( "PANTHER:PTHR12225:SF0") Annotation( "PRO:DNx") "A proteasomal ubiquitin receptor ADRM1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q98SH3") Annotation( "PRO:DNx") "A proteasomal ubiquitin receptor ADRM1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q98SH3") AnnotationAssertion(Annotation( "UniProtKB:Q98SH3") "ARM-1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q98SH3") "adhesion-regulating molecule 1 (chicken)") @@ -306731,7 +307790,7 @@ SubClassOf( ObjectSomeValuesFrom( (peptidase inhibitor 15 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q98ST6") Annotation( "PANTHER:PTHR10334:SF63") Annotation( "PRO:DNx") "A peptidase inhibitor 15 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q98ST6") Annotation( "PRO:DNx") "A peptidase inhibitor 15 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q98ST6") AnnotationAssertion(Annotation( "UniProtKB:Q98ST6") "SugarCrisp (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PI15") @@ -306763,7 +307822,7 @@ SubClassOf( ObjectSomeValuesFrom( (twisted gastrulation protein homolog 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q98T89") Annotation( "PANTHER:PTHR12312:SF1") Annotation( "PRO:DNx") "A twisted gastrulation protein homolog 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q98T89") Annotation( "PRO:DNx") "A twisted gastrulation protein homolog 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q98T89") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TWSG1") AnnotationAssertion( "protein") @@ -306780,7 +307839,7 @@ SubClassOf( ObjectSomeValuesFrom( (programmed cell death protein 4 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q98TX3") Annotation( "PANTHER:PTHR12626:SF0") Annotation( "PRO:DNx") "A programmed cell death protein 4 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q98TX3") Annotation( "PRO:DNx") "A programmed cell death protein 4 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q98TX3") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PDCD4") AnnotationAssertion(Annotation( "UniProtKB:Q98TX3") "protein I11/6 (chicken)") @@ -307792,6 +308851,7 @@ SubClassOf( ObjectSomeValuesFrom( (forkhead box protein C2 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q99958") "A forkhead box protein C2 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q99958 located_in GO:0005654") "Reactome:R-HSA-3927898") AnnotationAssertion( "UniProtKB:Q99958") AnnotationAssertion(Annotation( "UniProtKB:Q99958") "MFH-1 protein (human)") AnnotationAssertion(Annotation( "UniProtKB:Q99958") "forkhead-related protein FKHL14 (human)") @@ -308089,7 +309149,7 @@ SubClassOf( ObjectSomeValuesFrom( (sialic acid synthase (mouse)) -AnnotationAssertion(Annotation( "OMA:Q99J77") Annotation( "PANTHER:PTHR23416:SF1") Annotation( "PRO:DNx") "A sialic acid synthase that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q99J77") Annotation( "PRO:DNx") "A sialic acid synthase that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q99J77") AnnotationAssertion(Annotation( "UniProtKB:Q99J77") "N-acetylneuraminate-9-phosphate synthase (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q99J77") "N-acetylneuraminic acid phosphate synthase (mouse)") @@ -308126,7 +309186,7 @@ SubClassOf( ObjectSomeValuesFrom( (neuronal pentraxin receptor (mouse)) -AnnotationAssertion(Annotation( "OMA:Q99J85") Annotation( "PRO:DNx") "A neuronal pentraxin receptor that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A neuronal pentraxin receptor that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q99J85") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mNPTXR") AnnotationAssertion( "protein") @@ -308294,7 +309354,7 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q99JH7") Annotation( "PRO:DNx") "A calsyntenin-3 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q99JH7") -AnnotationAssertion(Annotation( "UniProtKB:Q99JH7") "Alc-beta (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q99JH7") "Cst-3 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q99JH7") "alcadein-beta (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCLSTN3") AnnotationAssertion( "protein") @@ -309026,7 +310086,7 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q99L45") Annotation( "PRO:DNx") "A eukaryotic translation initiation factor 2 subunit 2 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q99L45") -AnnotationAssertion(Annotation( "UniProtKB:Q99L45") "eIF-2-beta (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q99L45") "eIF2-beta (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q99L45") "eukaryotic translation initiation factor 2 subunit beta (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mEIF2S2") AnnotationAssertion( "protein") @@ -309180,17 +310240,17 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (translation initiation factor eIF-2B subunit alpha (mouse)) +# Class: (translation initiation factor eIF2B subunit alpha (mouse)) -AnnotationAssertion(Annotation( "OMA:Q99LC8") Annotation( "PRO:DNx") "A translation initiation factor eIF-2B subunit alpha that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q99LC8") Annotation( "PRO:DNx") "A translation initiation factor eIF2B subunit alpha that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q99LC8") -AnnotationAssertion(Annotation( "UniProtKB:Q99LC8") "eIF-2B GDP-GTP exchange factor subunit alpha (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q99LC8") "eIF2B GDP-GTP exchange factor subunit alpha (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mEIF2B1") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q99LC8") Annotation( ) "Eif2b1") AnnotationAssertion( "PR:Q99LC8") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "translation initiation factor eIF-2B subunit alpha (mouse)") +AnnotationAssertion(rdfs:label "translation initiation factor eIF2B subunit alpha (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -309996,10 +311056,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L34, mitochondrial (mouse)) +# Class: (large ribosomal subunit protein bL34m (mouse)) -AnnotationAssertion(Annotation( "OMA:Q99N91") Annotation( "PRO:DAN") "A 39S ribosomal protein L34, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q99N91") Annotation( "PRO:DAN") "A large ribosomal subunit protein bL34m that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q99N91") +AnnotationAssertion(Annotation( "UniProtKB:Q99N91") "39S ribosomal protein L34, mitochondrial (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q99N91") "L34mt (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q99N91") "MRP-L34 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMRPL34") @@ -310007,17 +311068,18 @@ AnnotationAssertion( "UniProtKB:Q99N91") Annotation( ) "Mrpl34") AnnotationAssertion( "PR:Q99N91") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L34, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL34m (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L1, mitochondrial (mouse)) +# Class: (large ribosomal subunit protein uL1m (mouse)) -AnnotationAssertion(Annotation( "OMA:Q99N96") Annotation( "PRO:DNx") "A 39S ribosomal protein L1, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q99N96") Annotation( "PRO:DNx") "A large ribosomal subunit protein uL1m that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q99N96") +AnnotationAssertion(Annotation( "UniProtKB:Q99N96") "39S ribosomal protein L1, mitochondrial (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q99N96") "L1mt (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q99N96") "MRP-L1 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMRPL1") @@ -310025,7 +311087,7 @@ AnnotationAssertion( "UniProtKB:Q99N96") Annotation( ) "Mrpl1") AnnotationAssertion( "PR:Q99N96") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L1, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL1m (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -310632,20 +311694,20 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L34, mitochondrial (human)) +# Class: (large ribosomal subunit protein bL34m (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9BQ48") "A 39S ribosomal protein L34, mitochondrial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9BQ48") "A large ribosomal subunit protein bL34m that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q9BQ48 located_in GO:0005743") "Reactome:R-HSA-5368205") AnnotationAssertion( "UniProtKB:Q9BQ48") +AnnotationAssertion(Annotation( "UniProtKB:Q9BQ48") "39S ribosomal protein L34, mitochondrial (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9BQ48") "L34mt (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9BQ48") "MRP-L34 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRPL34") -AnnotationAssertion(Annotation( "UniProtKB:Q9BQ48") "mitochondrial large ribosomal subunit protein bL34m (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9BQ48") Annotation( ) "MRPL34") AnnotationAssertion( "PR:Q9BQ48") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L34, mitochondrial (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL34m (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -311167,6 +312229,8 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q9BRX2") "A protein pelota that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q9BRX2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPELO") +AnnotationAssertion(Annotation( "UniProtKB:Q9BRX2") "hPelota") +AnnotationAssertion(Annotation( "UniProtKB:Q9BRX2") "protein Dom34 homolog (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9BRX2") Annotation( ) "CGI-17") AnnotationAssertion(Annotation( "UniProtKB:Q9BRX2") Annotation( ) "PELO") @@ -311298,7 +312362,6 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q9BSL1") "A ubiquitin-associated domain-containing protein 1 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q9BSL1 located_in GO:0005829") "Reactome:R-HSA-8851644") AnnotationAssertion( "UniProtKB:Q9BSL1") -AnnotationAssertion(Annotation( "UniProtKB:Q9BSL1") "E3 ubiquitin-protein ligase subunit KPC2 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9BSL1") "Kip1 ubiquitination-promoting complex protein 2 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9BSL1") "UBA domain-containing protein 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9BSL1") "glialblastoma cell differentiation-related protein 1 (human)") @@ -312555,6 +313618,7 @@ SubClassOf( ObjectSomeValuesFrom( (splicing factor YJU2 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9BW85") "A splicing factor YJU2 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9BW85 located_in GO:0005654") "Reactome:R-HSA-9770430") AnnotationAssertion( "UniProtKB:Q9BW85") AnnotationAssertion(Annotation( "UniProtKB:Q9BW85") "coiled-coil domain-containing protein 94 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hYJU2") @@ -312921,6 +313985,7 @@ SubClassOf( ObjectSomeValuesFrom( (oxysterol-binding protein-related protein 11 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9BXB4") "An oxysterol-binding protein-related protein 11 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9BXB4 located_in GO:0005886") "Reactome:R-HSA-9714667") AnnotationAssertion( "UniProtKB:Q9BXB4") AnnotationAssertion(Annotation( "UniProtKB:Q9BXB4") "ORP-11 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9BXB4") "OSBP-related protein 11 (human)") @@ -313527,40 +314592,40 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L32, mitochondrial (human)) +# Class: (large ribosomal subunit protein bL32m (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9BYC8") "A 39S ribosomal protein L32, mitochondrial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9BYC8") "A large ribosomal subunit protein bL32m that is encoded in the genome of human.") AnnotationAssertion(Annotation( "UniProtKB:Q9BYC8") "L32mt (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9BYC8") "MRP-L32 (human)") AnnotationAssertion(Annotation(rdfs:label "PR:Q9BYC8 located_in GO:0005743") "Reactome:R-HSA-5368195") AnnotationAssertion( "UniProtKB:Q9BYC8") +AnnotationAssertion(Annotation( "UniProtKB:Q9BYC8") "39S ribosomal protein L32, mitochondrial (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRPL32") -AnnotationAssertion(Annotation( "UniProtKB:Q9BYC8") "mitochondrial large ribosomal subunit protein bL32m (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9BYC8") Annotation( ) "HSPC283") AnnotationAssertion(Annotation( "UniProtKB:Q9BYC8") Annotation( ) "MRPL32") AnnotationAssertion( "PR:Q9BYC8") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L32, mitochondrial (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL32m (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L1, mitochondrial (human)) +# Class: (large ribosomal subunit protein uL1m (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9BYD6") "A 39S ribosomal protein L1, mitochondrial that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9BYD6") "A large ribosomal subunit protein uL1m that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q9BYD6") +AnnotationAssertion(Annotation( "UniProtKB:Q9BYD6") "39S ribosomal protein L1, mitochondrial (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9BYD6") "L1mt (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9BYD6") "MRP-L1 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMRPL1") -AnnotationAssertion(Annotation( "UniProtKB:Q9BYD6") "mitochondrial large ribosomal subunit protein uL1m (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9BYD6") Annotation( ) "BM-022") AnnotationAssertion(Annotation( "UniProtKB:Q9BYD6") Annotation( ) "MRPL1") AnnotationAssertion( "PR:Q9BYD6") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L1, mitochondrial (human)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL1m (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -313586,6 +314651,7 @@ SubClassOf( ObjectSomeValuesFrom( (sulfiredoxin-1 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9BYN0") "A sulfiredoxin-1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9BYN0 located_in GO:0005789") "Reactome:R-HSA-9759366") AnnotationAssertion( "UniProtKB:Q9BYN0") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSRXN1") AnnotationAssertion( "protein") @@ -314814,7 +315880,7 @@ SubClassOf( ObjectSomeValuesFrom( (plakophilin-2 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9CQ73") Annotation( "PANTHER:PTHR10372:SF2") Annotation( "PRO:DNx") "A plakophilin-2 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9CQ73") Annotation( "PRO:DNx") "A plakophilin-2 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9CQ73") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mPKP2") AnnotationAssertion( "protein") @@ -314997,7 +316063,7 @@ SubClassOf( ObjectSomeValuesFrom( (LYR motif-containing protein 1 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9CQB7") Annotation( "PANTHER:PTHR14273:SF0") Annotation( "PRO:DNx") "A LYR motif-containing protein 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9CQB7") Annotation( "PRO:DNx") "A LYR motif-containing protein 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9CQB7") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mLYRM1") AnnotationAssertion( "protein") @@ -315359,10 +316425,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L33, mitochondrial (mouse)) +# Class: (large ribosomal subunit protein bL33m (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9CQP0") Annotation( "PRO:DNx") "A 39S ribosomal protein L33, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9CQP0") Annotation( "PRO:DNx") "A large ribosomal subunit protein bL33m that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9CQP0") +AnnotationAssertion(Annotation( "UniProtKB:Q9CQP0") "39S ribosomal protein L33, mitochondrial (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9CQP0") "L33mt (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9CQP0") "MRP-L33 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMRPL33") @@ -315370,7 +316437,7 @@ AnnotationAssertion( "UniProtKB:Q9CQP0") Annotation( ) "Mrpl33") AnnotationAssertion( "PR:Q9CQP0") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L33, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL33m (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -315922,19 +316989,20 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (growth arrest and DNA damage-inducible proteins-interacting protein 1 (mouse)) +# Class: (large ribosomal subunit protein mL64 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9CR59") Annotation( "PRO:DNx") "A growth arrest and DNA damage-inducible proteins-interacting protein 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9CR59") Annotation( "PRO:DNx") "A large ribosomal subunit protein mL64 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9CR59") AnnotationAssertion(Annotation( "UniProtKB:Q9CR59") "39S ribosomal protein L59, mitochondrial (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9CR59") "MRP-L59 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q9CR59") "growth arrest and DNA damage-inducible proteins-interacting protein 1 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mGADD45GIP1") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9CR59") Annotation( ) "Gadd45gip1") AnnotationAssertion(Annotation( "UniProtKB:Q9CR59") Annotation( ) "Mrpl59") AnnotationAssertion( "PR:Q9CR59") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "growth arrest and DNA damage-inducible proteins-interacting protein 1 (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein mL64 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -316019,10 +317087,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (28S ribosomal protein S14, mitochondrial (mouse)) +# Class: (small ribosomal subunit protein uS14m (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9CR88") Annotation( "PRO:DNx") "A 28S ribosomal protein S14, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9CR88") Annotation( "PRO:DNx") "A small ribosomal subunit protein uS14m that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9CR88") +AnnotationAssertion(Annotation( "UniProtKB:Q9CR88") "28S ribosomal protein S14, mitochondrial (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9CR88") "MRP-S14 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9CR88") "S14mt (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMRPS14") @@ -316030,7 +317099,7 @@ AnnotationAssertion( "UniProtKB:Q9CR88") Annotation( ) "Mrps14") AnnotationAssertion( "PR:Q9CR88") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "28S ribosomal protein S14, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein uS14m (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -317058,6 +318127,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q9CXV9") "squamous cell carcinoma-related oncogene 5 (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9CXV9") Annotation( ) "Dcun1d5") +AnnotationAssertion(Annotation( "UniProtKB:Q9CXV9") Annotation( ) "SCCRO5") AnnotationAssertion( "PR:Q9CXV9") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "DCN1-like protein 5 (mouse)") @@ -317086,16 +318156,17 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L11 (mouse)) +# Class: (large ribosomal subunit protein uL5 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9CXW4") Annotation( "PRO:DNx") "A 60S ribosomal protein L11 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9CXW4") Annotation( "PRO:DNx") "A eukaryotic-type large ribosomal subunit protein uL5 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9CXW4") +AnnotationAssertion(Annotation( "UniProtKB:Q9CXW4") "60S ribosomal protein L11 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRPL11") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9CXW4") Annotation( ) "Rpl11") AnnotationAssertion( "PR:Q9CXW4") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L11 (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL5 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -317337,7 +318408,7 @@ SubClassOf( ObjectSomeValuesFrom( (nuclear prelamin A recognition factor (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A nuclear prelamin A recognition factor that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9CYQ7") Annotation( "PRO:DNx") "A nuclear prelamin A recognition factor that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9CYQ7") AnnotationAssertion(Annotation( "UniProtKB:Q9CYQ7") "IOP2 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9CYQ7") "iron-only hydrogenase-like protein 2 (mouse)") @@ -317479,10 +318550,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L55, mitochondrial (mouse)) +# Class: (large ribosomal subunit protein mL55 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9CZ83") Annotation( "PRO:DNx") "A 39S ribosomal protein L55, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9CZ83") Annotation( "PRO:DNx") "A large ribosomal subunit protein mL55 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9CZ83") +AnnotationAssertion(Annotation( "UniProtKB:Q9CZ83") "39S ribosomal protein L55, mitochondrial (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9CZ83") "L55mt (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9CZ83") "MRP-L55 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMRPL55") @@ -317490,7 +318562,7 @@ AnnotationAssertion( "UniProtKB:Q9CZ83") Annotation( ) "Mrpl55") AnnotationAssertion( "PR:Q9CZ83") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L55, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein mL55 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -317755,7 +318827,7 @@ SubClassOf( ObjectSomeValuesFrom( (serine hydroxymethyltransferase, mitochondrial (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9CZN7") Annotation( "PANTHER:PTHR11680:SF0") Annotation( "PRO:DNx") "A serine hydroxymethyltransferase, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9CZN7") Annotation( "PRO:DNx") "A serine hydroxymethyltransferase, mitochondrial that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9CZN7") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mSHMT2") AnnotationAssertion( "protein") @@ -317903,16 +318975,17 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (40S ribosomal protein S19 (mouse)) +# Class: (small ribosomal subunit protein eS19 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9CZX8") Annotation( "PRO:DNx") "A 40S ribosomal protein S19 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9CZX8") Annotation( "PRO:DNx") "A small ribosomal subunit protein eS19 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9CZX8") +AnnotationAssertion(Annotation( "UniProtKB:Q9CZX8") "40S ribosomal protein S19 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRPS19") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9CZX8") Annotation( ) "Rps19") AnnotationAssertion( "PR:Q9CZX8") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "40S ribosomal protein S19 (mouse)") +AnnotationAssertion(rdfs:label "small ribosomal subunit protein eS19 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -318414,10 +319487,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L52, mitochondrial (mouse)) +# Class: (large ribosomal subunit protein mL52 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9D0Y8") Annotation( "PRO:DNx") "A 39S ribosomal protein L52, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9D0Y8") Annotation( "PRO:DNx") "A large ribosomal subunit protein mL52 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9D0Y8") +AnnotationAssertion(Annotation( "UniProtKB:Q9D0Y8") "39S ribosomal protein L52, mitochondrial (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9D0Y8") "L52mt (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9D0Y8") "MRP-L52 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMRPL52") @@ -318425,7 +319499,7 @@ AnnotationAssertion( "UniProtKB:Q9D0Y8") Annotation( ) "Mrpl52") AnnotationAssertion( "PR:Q9D0Y8") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L52, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein mL52 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -318560,10 +319634,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L28, mitochondrial (mouse)) +# Class: (large ribosomal subunit protein bL28m (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9D1B9") Annotation( "PRO:DNx") "A 39S ribosomal protein L28, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9D1B9") Annotation( "PRO:DNx") "A large ribosomal subunit protein bL28m that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9D1B9") +AnnotationAssertion(Annotation( "UniProtKB:Q9D1B9") "39S ribosomal protein L28, mitochondrial (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9D1B9") "L28mt (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9D1B9") "MRP-L28 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMRPL28") @@ -318571,7 +319646,7 @@ AnnotationAssertion( "UniProtKB:Q9D1B9") Annotation( ) "Mrpl28") AnnotationAssertion( "PR:Q9D1B9") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L28, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL28m (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -318640,7 +319715,7 @@ SubClassOf( ObjectSomeValuesFrom( (cysteine-rich tail protein 1 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9D1E4") Annotation( "PRO:DNx") "A cysteine-rich tail protein 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A cysteine-rich tail protein 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9D1E4") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCYSRT1") AnnotationAssertion( "protein") @@ -318760,10 +319835,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L14, mitochondrial (mouse)) +# Class: (large ribosomal subunit protein uL14m (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9D1I6") Annotation( "PRO:DNx") "A 39S ribosomal protein L14, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9D1I6") Annotation( "PRO:DNx") "A large ribosomal subunit protein uL14m that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9D1I6") +AnnotationAssertion(Annotation( "UniProtKB:Q9D1I6") "39S ribosomal protein L14, mitochondrial (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9D1I6") "L14mt (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9D1I6") "MRP-L14 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMRPL14") @@ -318771,7 +319847,7 @@ AnnotationAssertion( "UniProtKB:Q9D1I6") Annotation( ) "Mrpl14") AnnotationAssertion( "PR:Q9D1I6") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L14, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL14m (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -318800,7 +319876,7 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q9D1M0") Annotation( "PRO:DNx") "A protein SEC13 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9D1M0") -AnnotationAssertion(Annotation( "UniProtKB:Q9D1M0") "GATOR complex protein SEC13 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q9D1M0") "GATOR2 complex protein SEC13 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9D1M0") "SEC13-like protein 1 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9D1M0") "SEC13-related protein (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mSEC13") @@ -318834,10 +319910,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L21, mitochondrial (mouse)) +# Class: (large ribosomal subunit protein bL21m (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9D1N9") Annotation( "PRO:DNx") "A 39S ribosomal protein L21, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9D1N9") Annotation( "PRO:DNx") "A large ribosomal subunit protein bL21m that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9D1N9") +AnnotationAssertion(Annotation( "UniProtKB:Q9D1N9") "39S ribosomal protein L21, mitochondrial (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9D1N9") "L21mt (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9D1N9") "MRP-L21 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMRPL21") @@ -318846,7 +319923,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q9D1N9") Annotation( ) "Mrpl21") AnnotationAssertion( "PR:Q9D1N9") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L21, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL21m (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -319217,7 +320294,7 @@ SubClassOf( ObjectSomeValuesFrom( (carcinoembryonic antigen-related cell adhesion molecule 20 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9D2Z1") Annotation( "PANTHER:PTHR19955:SF50") Annotation( "PRO:DNx") "A carcinoembryonic antigen-related cell adhesion molecule 20 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9D2Z1") Annotation( "PRO:DNx") "A carcinoembryonic antigen-related cell adhesion molecule 20 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9D2Z1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCEACAM20") AnnotationAssertion( "protein") @@ -319598,7 +320675,7 @@ SubClassOf( ObjectSomeValuesFrom( (heat shock factor 2-binding protein (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9D4G2") Annotation( "PANTHER:PTHR15434:SF0") Annotation( "PRO:DNx") "A heat shock factor 2-binding protein that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9D4G2") Annotation( "PRO:DNx") "A heat shock factor 2-binding protein that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9D4G2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mHSF2BP") AnnotationAssertion( "protein") @@ -320240,7 +321317,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein S100-A16 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9D708") Annotation( "PANTHER:PTHR11639:SF2") Annotation( "PRO:DNx") "A protein S100-A16 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9D708") Annotation( "PRO:DNx") "A protein S100-A16 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9D708") AnnotationAssertion(Annotation( "UniProtKB:Q9D708") "S100 calcium binding protein A16 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mS100A16") @@ -320310,10 +321387,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L2, mitochondrial (mouse)) +# Class: (large ribosomal subunit protein uL2m (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A 39S ribosomal protein L2, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A large ribosomal subunit protein uL2m that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9D773") +AnnotationAssertion(Annotation( "UniProtKB:Q9D773") "39S ribosomal protein L2, mitochondrial (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9D773") "L2mt (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9D773") "MRP-L2 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMRPL2") @@ -320321,7 +321399,7 @@ AnnotationAssertion( "UniProtKB:Q9D773") Annotation( ) "Mrpl2") AnnotationAssertion( "PR:Q9D773") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L2, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein uL2m (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -321919,10 +322997,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L12, mitochondrial (mouse)) +# Class: (large ribosomal subunit protein bL12m (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9DB15") Annotation( "PRO:DAN") "A 39S ribosomal protein L12, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9DB15") Annotation( "PRO:DAN") "A large ribosomal subunit protein bL12m that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9DB15") +AnnotationAssertion(Annotation( "UniProtKB:Q9DB15") "39S ribosomal protein L12, mitochondrial (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9DB15") "L12mt (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9DB15") "MRP-L12 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMRPL12") @@ -321931,7 +323010,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q9DB15") Annotation( ) "Rpml12") AnnotationAssertion( "PR:Q9DB15") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L12, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL12m (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -322416,6 +323495,25 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (ubiquitin-like modifier-activating enzyme 7 (mouse)) + +AnnotationAssertion(Annotation( "OMA:Q9DBK7") Annotation( "PRO:DNx") "A ubiquitin-like modifier-activating enzyme 7 that is encoded in the genome of mouse.") +AnnotationAssertion( "UniProtKB:Q9DBK7") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mUBA7") +AnnotationAssertion(Annotation( "UniProtKB:Q9DBK7") "ubiquitin-activating enzyme 7 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q9DBK7") "ubiquitin-activating enzyme E1 homolog (mouse)") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q9DBK7") Annotation( ) "Uba7") +AnnotationAssertion(Annotation( "UniProtKB:Q9DBK7") Annotation( ) "Ube1l") +AnnotationAssertion( "PR:Q9DBK7") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "ubiquitin-like modifier-activating enzyme 7 (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (short/branched chain specific acyl-CoA dehydrogenase, mitochondrial (mouse)) AnnotationAssertion(Annotation( "OMA:Q9DBL1") Annotation( "PRO:DNx") "A short/branched chain specific acyl-CoA dehydrogenase, mitochondrial that is encoded in the genome of mouse.") @@ -322878,10 +323976,11 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (39S ribosomal protein L32, mitochondrial (mouse)) +# Class: (large ribosomal subunit protein bL32m (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9DCI9") Annotation( "PRO:DNx") "A 39S ribosomal protein L32, mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9DCI9") Annotation( "PRO:DNx") "A large ribosomal subunit protein bL32m that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9DCI9") +AnnotationAssertion(Annotation( "UniProtKB:Q9DCI9") "39S ribosomal protein L32, mitochondrial (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9DCI9") "L32mt (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9DCI9") "MRP-L32 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9DCI9") "heart-expressed gene 1 protein (mouse)") @@ -322891,7 +323990,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q9DCI9") Annotation( ) "Mrpl32") AnnotationAssertion( "PR:Q9DCI9") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "39S ribosomal protein L32, mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein bL32m (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -323222,7 +324321,7 @@ SubClassOf( ObjectSomeValuesFrom( (phosphoinositide 3-kinase adapter protein 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9DDT2") Annotation( "PANTHER:PTHR16267:SF3") Annotation( "PRO:DNx") "A phosphoinositide 3-kinase adapter protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9DDT2") Annotation( "PRO:DNx") "A phosphoinositide 3-kinase adapter protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9DDT2") AnnotationAssertion(Annotation( "UniProtKB:Q9DDT2") "B-cell adapter for phosphoinositide 3-kinase (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q9DDT2") "B-cell phosphoinositide 3-kinase adapter protein 1 (chicken)") @@ -323241,7 +324340,7 @@ SubClassOf( ObjectSomeValuesFrom( (proliferating cell nuclear antigen (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9DEA3") Annotation( "PANTHER:PTHR11352:SF0") Annotation( "PRO:DNx") "A proliferating cell nuclear antigen that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9DEA3") Annotation( "PRO:DNx") "A proliferating cell nuclear antigen that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9DEA3") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PCNA") AnnotationAssertion( "protein") @@ -323275,7 +324374,7 @@ SubClassOf( ObjectSomeValuesFrom( (teneurin-2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11219:SF8") Annotation( "PRO:DNx") "A teneurin-2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A teneurin-2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9DER5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TENM2") AnnotationAssertion(Annotation( "UniProtKB:Q9DER5") "neurestin (chicken)") @@ -323299,7 +324398,7 @@ SubClassOf( ObjectSomeValuesFrom( (steroidogenic acute regulatory protein, mitochondrial (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9DG09") Annotation( "PANTHER:PTHR12136:SF9") Annotation( "PRO:DNx") "A steroidogenic acute regulatory protein, mitochondrial that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9DG09") Annotation( "PRO:DNx") "A steroidogenic acute regulatory protein, mitochondrial that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9DG09") AnnotationAssertion(Annotation( "UniProtKB:Q9DG09") "START domain-containing protein 1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q9DG09") "StAR (chicken)") @@ -323318,7 +324417,7 @@ SubClassOf( ObjectSomeValuesFrom( (pterin-4-alpha-carbinolamine dehydratase 2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR12599:SF0") Annotation( "PRO:DNx") "A pterin-4-alpha-carbinolamine dehydratase 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A pterin-4-alpha-carbinolamine dehydratase 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9DG45") AnnotationAssertion(Annotation( "UniProtKB:Q9DG45") "4-alpha-hydroxy-tetrahydropterin dehydratase 2 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q9DG45") "DCoH-alpha (chicken)") @@ -323826,9 +324925,9 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (mouse)) +# Class: (methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9EQ20") Annotation( "PRO:DNx") "A methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9EQ20") Annotation( "PRO:DNx") "A methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9EQ20") AnnotationAssertion(Annotation( "UniProtKB:Q9EQ20") "MMSDH (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9EQ20") "aldehyde dehydrogenase family 6 member A1 (mouse)") @@ -323838,7 +324937,7 @@ AnnotationAssertion( "UniProtKB:Q9EQ20") Annotation( ) "Aldh6a1") AnnotationAssertion( "PR:Q9EQ20") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (mouse)") +AnnotationAssertion(rdfs:label "methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -324059,7 +325158,7 @@ SubClassOf( ObjectSomeValuesFrom( (small conductance calcium-activated potassium channel protein 1 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9EQR3") Annotation( "PRO:DNx") "A small conductance calcium-activated potassium channel protein 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "PRO:CNA") "A small conductance calcium-activated potassium channel protein 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9EQR3") AnnotationAssertion(Annotation( "UniProtKB:Q9EQR3") "KCa2.1 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9EQR3") "SKCa 1 (mouse)") @@ -324252,8 +325351,6 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q9ER65") Annotation( "PRO:DNx") "A calsyntenin-2 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9ER65") -AnnotationAssertion(Annotation( "UniProtKB:Q9ER65") "Alc-gamma (mouse)") -AnnotationAssertion(Annotation( "UniProtKB:Q9ER65") "alcadein-gamma (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCLSTN2") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9ER65") Annotation( ) "Clstn2") @@ -327179,6 +328276,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q9H3N1") "A thioredoxin-related transmembrane protein 1 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q9H3N1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hTMX1") +AnnotationAssertion(Annotation( "UniProtKB:Q9H3N1") "protein disulfide-isomerase TMX1 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9H3N1") "thioredoxin domain-containing protein 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9H3N1") "transmembrane Trx-related protein (human)") AnnotationAssertion( "protein") @@ -327219,6 +328317,7 @@ SubClassOf( ObjectSomeValuesFrom( (Cdc42 effector protein 4 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9H3Q1") "A Cdc42 effector protein 4 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9H3Q1 located_in GO:0005829") "Reactome:R-HSA-9691381") AnnotationAssertion( "UniProtKB:Q9H3Q1") AnnotationAssertion(Annotation( "UniProtKB:Q9H3Q1") "binder of Rho GTPases 4 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCDC42EP4") @@ -328013,6 +329112,7 @@ SubClassOf( ObjectSomeValuesFrom( (epidermal growth factor receptor kinase substrate 8-like protein 2 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9H6S3") "An epidermal growth factor receptor kinase substrate 8-like protein 2 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9H6S3 located_in GO:0005829") "Reactome:R-HSA-9663247") AnnotationAssertion( "UniProtKB:Q9H6S3") AnnotationAssertion(Annotation( "UniProtKB:Q9H6S3") "EPS8-like protein 2 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9H6S3") "EPS8-related protein 2 (human)") @@ -329955,7 +331055,7 @@ SubClassOf( ObjectSomeValuesFrom( (unconventional myosin-VI (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR13140:SF26") Annotation( "PRO:DNx") "A myosin-VI that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A myosin-VI that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9I8D1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MYO6") AnnotationAssertion(Annotation( "UniProtKB:Q9I8D1") "unconventional myosin-6 (chicken)") @@ -329973,7 +331073,7 @@ SubClassOf( ObjectSomeValuesFrom( (CD40 ligand (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9I8D8") Annotation( "PANTHER:PTHR11471:SF5") Annotation( "PRO:DNx") "A tumor necrosis factor ligand superfamily member 5 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:WCB") "A tumor necrosis factor ligand superfamily member 5 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9I8D8") AnnotationAssertion(Annotation( "UniProtKB:Q9I8D8") "CD40-L (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CD40LG") @@ -330010,7 +331110,7 @@ SubClassOf( ObjectSomeValuesFrom( (otoraplin (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9I8P6") Annotation( "PANTHER:PTHR23158:SF17") Annotation( "PRO:DNx") "An otoraplin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9I8P6") Annotation( "PRO:DNx") "An otoraplin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9I8P6") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-OTOR") AnnotationAssertion( "protein") @@ -330026,7 +331126,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein EURL (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR15961:SF0") Annotation( "PRO:DNx") "A protein EURL that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9I8W6") Annotation( "PRO:DNx") "A protein EURL that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9I8W6") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-EURL") AnnotationAssertion(Annotation( "UniProtKB:Q9I8W6") "early undifferentiated retina and lens protein (chicken)") @@ -330043,7 +331143,7 @@ SubClassOf( ObjectSomeValuesFrom( (regucalcin (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10907:SF11") Annotation( "PRO:DNx") "A regucalcin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9I923") Annotation( "PRO:DNx") "A regucalcin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9I923") AnnotationAssertion(Annotation( "UniProtKB:Q9I923") "GNL (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q9I923") "RC (chicken)") @@ -330062,7 +331162,7 @@ SubClassOf( ObjectSomeValuesFrom( (platelet-derived growth factor C (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9I946") Annotation( "PANTHER:PTHR10127:SF316") Annotation( "PRO:DNx") "A platelet-derived growth factor C that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9I946") Annotation( "PRO:DNx") "A platelet-derived growth factor C that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9I946") AnnotationAssertion(Annotation( "UniProtKB:Q9I946") "PDGF-C (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PDGFC") @@ -330081,7 +331181,7 @@ SubClassOf( ObjectSomeValuesFrom( (glycine amidinotransferase, mitochondrial (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10488:SF0") Annotation( "PRO:DNx") "A glycine amidinotransferase, mitochondrial that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A glycine amidinotransferase, mitochondrial that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9I9K9") AnnotationAssertion(Annotation( "UniProtKB:Q9I9K9") "L-arginine:glycine amidinotransferase (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-GATM") @@ -330096,11 +331196,10 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (intracellular hyaluronan-binding protein 4 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR12299:SF7") Annotation( "PRO:DNx") "An intracellular hyaluronan-binding protein 4 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9I9R0") Annotation( "PRO:DNx") "An intracellular hyaluronan-binding protein 4 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9I9R0") AnnotationAssertion(Annotation( "UniProtKB:Q9I9R0") "IHABP4 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HABP4") @@ -330117,7 +331216,7 @@ SubClassOf( ObjectSomeValuesFrom( (frizzled-4 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9IA05") Annotation( "PANTHER:PTHR11309:SF23") Annotation( "PRO:DNx") "A frizzled-4 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9IA05") Annotation( "PRO:DNx") "A frizzled-4 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9IA05") AnnotationAssertion(Annotation( "UniProtKB:Q9IA05") "Fz-4 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q9IA05") "cFz-4 (chicken)") @@ -330136,7 +331235,7 @@ SubClassOf( ObjectSomeValuesFrom( (secreted frizzled-related protein 2 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A secreted frizzled-related protein 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9IA96") Annotation( "PRO:DNx") "A secreted frizzled-related protein 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9IA96") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SFRP2") AnnotationAssertion(Annotation( "UniProtKB:Q9IA96") "sFRP-2 (chicken)") @@ -330153,7 +331252,7 @@ SubClassOf( ObjectSomeValuesFrom( (noelin (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9IAK4") Annotation( "PANTHER:PTHR23192:SF9") Annotation( "PRO:DNx") "A noelin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9IAK4") Annotation( "PRO:DNx") "A noelin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9IAK4") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-OLFM1") AnnotationAssertion(Annotation( "UniProtKB:Q9IAK4") "neuronal olfactomedin-related ER localized protein (chicken)") @@ -330193,7 +331292,7 @@ SubClassOf( ObjectSomeValuesFrom( (double-strand break repair protein MRE11 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10139:SF0") Annotation( "PRO:DNx") "A double-strand break repair protein MRE11 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9IAM7") Annotation( "PRO:DNx") "A double-strand break repair protein MRE11 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9IAM7") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MRE11") AnnotationAssertion( "protein") @@ -330310,9 +331409,9 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (protein TSSC4 (mouse)) +# Class: (U5 small nuclear ribonucleoprotein TSSC4 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9JHE7") Annotation( "PRO:DNx") "A protein TSSC4 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9JHE7") Annotation( "PRO:DNx") "A U5 small nuclear ribonucleoprotein TSSC4 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9JHE7") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mTSSC4") AnnotationAssertion( "protein") @@ -330320,7 +331419,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q9JHE7") Annotation( ) "Tssc4") AnnotationAssertion( "PR:Q9JHE7") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "protein TSSC4 (mouse)") +AnnotationAssertion(rdfs:label "U5 small nuclear ribonucleoprotein TSSC4 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -330669,22 +331768,22 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (aldehyde dehydrogenase family 1 member A3 (mouse)) +# Class: (retinaldehyde dehydrogenase 3 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9JHW9") Annotation( "PRO:DNx") "An aldehyde dehydrogenase family 1 member A3 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9JHW9") Annotation( "PRO:DNx") "A retinaldehyde dehydrogenase 3 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9JHW9") AnnotationAssertion(Annotation( "UniProtKB:Q9JHW9") "RALDH-3 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9JHW9") "RalDH3 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9JHW9") "aldehyde dehydrogenase 6 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q9JHW9") "aldehyde dehydrogenase family 1 member A3 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mALDH1A3") -AnnotationAssertion(Annotation( "UniProtKB:Q9JHW9") "retinaldehyde dehydrogenase 3 (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9JHW9") Annotation( ) "Aldh1a3") AnnotationAssertion(Annotation( "UniProtKB:Q9JHW9") Annotation( ) "Aldh6") AnnotationAssertion(Annotation( "UniProtKB:Q9JHW9") Annotation( ) "Raldh3") AnnotationAssertion( "PR:Q9JHW9") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "aldehyde dehydrogenase family 1 member A3 (mouse)") +AnnotationAssertion(rdfs:label "retinaldehyde dehydrogenase 3 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -330749,8 +331848,10 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q9JI46") Annotation( "PRO:DNx") "A diphosphoinositol polyphosphate phosphohydrolase 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9JI46") +AnnotationAssertion(Annotation( "UniProtKB:Q9JI46") "Ap6A hydrolase (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9JI46") "DIPP-1 (mouse)") -AnnotationAssertion(Annotation( "UniProtKB:Q9JI46") "diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 1 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q9JI46") "diadenosine hexaphosphate hydrolase (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q9JI46") "endopolyphosphatase (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mNUDT3") AnnotationAssertion(Annotation( "UniProtKB:Q9JI46") "muDIPP1 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9JI46") "nucleoside diphosphate-linked moiety X motif 3 (mouse)") @@ -330759,6 +331860,8 @@ AnnotationAssertion( "UniProtKB:Q9JI46") Annotation( ) "Dipp") AnnotationAssertion(Annotation( "UniProtKB:Q9JI46") Annotation( ) "Dipp1") AnnotationAssertion(Annotation( "UniProtKB:Q9JI46") Annotation( ) "Nudt3") +AnnotationAssertion(Annotation( "UniProtKB:Q9JI46") "m7GpppN-mRNA hydrolase (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q9JI46") "m7GpppX diphosphatase (mouse)") AnnotationAssertion( "PR:Q9JI46") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "diphosphoinositol polyphosphate phosphohydrolase 1 (mouse)") @@ -331294,16 +332397,17 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L38 (mouse)) +# Class: (large ribosomal subunit protein eL38 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9JJI8") Annotation( "PRO:DNx") "A 60S ribosomal protein L38 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9JJI8") Annotation( "PRO:DNx") "A large ribosomal subunit protein eL38 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9JJI8") +AnnotationAssertion(Annotation( "UniProtKB:Q9JJI8") "60S ribosomal protein L38 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRPL38") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9JJI8") Annotation( ) "Rpl38") AnnotationAssertion( "PR:Q9JJI8") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L38 (mouse)") +AnnotationAssertion(rdfs:label "large ribosomal subunit protein eL38 (mouse)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -333817,6 +334921,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "A Fanconi anemia group F protein that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q9NPI8 located_in GO:0005654") "Reactome:R-HSA-419537") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9NPI8 located_in GO:0005829") "Reactome:R-HSA-420794") AnnotationAssertion( "UniProtKB:Q9NPI8") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hFANCF") AnnotationAssertion(Annotation( "UniProtKB:Q9NPI8") "protein FACF (human)") @@ -336046,6 +337151,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") "An E3 ubiquitin-protein ligase FANCL that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q9NW38 located_in GO:0005654") "Reactome:R-HSA-419520") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9NW38 located_in GO:0005829") "Reactome:R-HSA-420789") AnnotationAssertion( "UniProtKB:Q9NW38") AnnotationAssertion(Annotation( "UniProtKB:Q9NW38") "FAAP43 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9NW38") "Fanconi anemia group L protein (human)") @@ -336715,6 +337821,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein BTG4 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9NY30") "A protein BTG4 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9NY30 located_in GO:0005829") "Reactome:R-HSA-9817641") AnnotationAssertion( "UniProtKB:Q9NY30") AnnotationAssertion(Annotation( "UniProtKB:Q9NY30") "BTG family member 4 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hBTG4") @@ -337041,6 +338148,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q9NZ45") "A CDGSH iron-sulfur domain-containing protein 1 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q9NZ45") AnnotationAssertion(Annotation( "UniProtKB:Q9NZ45") "MitoNEET (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q9NZ45") "cysteine transaminase CISD1 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCISD1") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9NZ45") Annotation( ) "C10orf70") @@ -337131,6 +338239,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q9NZA1") "A chloride intracellular channel protein 5 that is encoded in the genome of human.") AnnotationAssertion( "DTO:01100083") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9NZA1 located_in GO:0005886") "Reactome:R-HSA-2684965") AnnotationAssertion( "UniProtKB:Q9NZA1") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCLIC5") AnnotationAssertion( "protein") @@ -337926,6 +339035,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q9P0U3") "A sentrin-specific protease 1 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q9P0U3 located_in GO:0005654") "Reactome:R-HSA-2984299") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9P0U3 located_in GO:0005829") "Reactome:R-HSA-9715128") AnnotationAssertion( "UniProtKB:Q9P0U3") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSENP1") AnnotationAssertion(Annotation( "UniProtKB:Q9P0U3") "sentrin/SUMO-specific protease SENP1 (human)") @@ -338220,6 +339330,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q9P286") "A serine/threonine-protein kinase PAK 5 that is encoded in the genome of human.") AnnotationAssertion(Annotation( "UniProtKB:Q9P286") "PAK-5 (human)") AnnotationAssertion( "DTO:03100389") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9P286 located_in GO:0005886") "Reactome:R-HSA-211555") AnnotationAssertion(Annotation(rdfs:label "PR:Q9P286 located_in GO:0005829") "Reactome:R-HSA-428459") AnnotationAssertion( "UniProtKB:Q9P286") AnnotationAssertion(Annotation( "UniProtKB:Q9P286") "PAK-7 (human)") @@ -338532,7 +339643,7 @@ SubClassOf( ObjectSomeValuesFrom( (mitochondrial fission regulator 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9PTD5") Annotation( "PANTHER:PTHR14215:SF0") Annotation( "PRO:DNx") "A mitochondrial fission regulator 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9PTD5") Annotation( "PRO:DNx") "A mitochondrial fission regulator 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9PTD5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MTFR1") AnnotationAssertion(Annotation( "UniProtKB:Q9PTD5") "chondrocyte protein with a poly-proline region (chicken)") @@ -338550,7 +339661,7 @@ SubClassOf( ObjectSomeValuesFrom( (CTD small phosphatase-like protein (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR12210:SF12") Annotation( "PRO:DNx") "A CTD small phosphatase-like protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A CTD small phosphatase-like protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9PTJ6") AnnotationAssertion(Annotation( "UniProtKB:Q9PTJ6") "CTDSP-like (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q9PTJ6") "NLI-interacting factor 1 (chicken)") @@ -338571,7 +339682,7 @@ SubClassOf( ObjectSomeValuesFrom( (cholecystokinin (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A cholecystokinin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9PU41") Annotation( "PRO:DNx") "A cholecystokinin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9PU41") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CCK") AnnotationAssertion( "protein") @@ -338621,7 +339732,7 @@ SubClassOf( ObjectSomeValuesFrom( (dual specificity protein phosphatase 4 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9PW71") Annotation( "PANTHER:PTHR10159:SF111") Annotation( "PRO:DNx") "A dual specificity protein phosphatase 4 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9PW71") Annotation( "PRO:DNx") "A dual specificity protein phosphatase 4 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9PW71") AnnotationAssertion(Annotation( "UniProtKB:Q9PW71") "MAP kinase phosphatase 2 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q9PW71") "MKP-2 (chicken)") @@ -338641,7 +339752,7 @@ SubClassOf( ObjectSomeValuesFrom( (PDZ and LIM domain protein 4 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A PDZ and LIM domain protein 4 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9PW72") Annotation( "PRO:DNx") "A PDZ and LIM domain protein 4 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9PW72") AnnotationAssertion(Annotation( "UniProtKB:Q9PW72") "LIM protein RIL (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PDLIM4") @@ -338660,7 +339771,7 @@ SubClassOf( ObjectSomeValuesFrom( (cerberus (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9PWB0") Annotation( "PRO:DNx") "A cerberus that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A cerberus that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9PWB0") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CER1") AnnotationAssertion( "protein") @@ -338672,13 +339783,12 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (T-box transcription factor TBX5 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9PWE8") Annotation( "PANTHER:PTHR11267:SF28") Annotation( "PRO:DNx") "A T-box transcription factor TBX5 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9PWE8") Annotation( "PRO:DNx") "A T-box transcription factor TBX5 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9PWE8") AnnotationAssertion(Annotation( "UniProtKB:Q9PWE8") "T-box protein 5 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-TBX5") @@ -339060,7 +340170,6 @@ SubClassOf( ObjectSomeValuesFrom( "OMA:Q9QWZ1") Annotation( "PRO:DNx") "A cell cycle checkpoint protein RAD1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9QWZ1") -AnnotationAssertion(Annotation( "UniProtKB:Q9QWZ1") "DNA repair exonuclease rad1 homolog (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9QWZ1") "Rad1-like DNA damage checkpoint protein (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRAD1") AnnotationAssertion( "protein") @@ -339997,6 +341106,7 @@ AnnotationAssertion(Annotation( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9QYY9") Annotation( ) "Adh2") AnnotationAssertion(Annotation( "UniProtKB:Q9QYY9") Annotation( ) "Adh4") +AnnotationAssertion(Annotation( "UniProtKB:Q9QYY9") "alcohol dehydrogenase 2 (mouse)") AnnotationAssertion( "PR:Q9QYY9") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "all-trans-retinol dehydrogenase [NAD(+)] ADH4 (mouse)") @@ -340188,11 +341298,13 @@ AnnotationAssertion(Annotation( "UniProtKB:Q9QZ73") "DCUN1 domain-containing protein 1 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9QZ73") "defective in cullin neddylation protein 1-like protein 1 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mDCUN1D1") +AnnotationAssertion(Annotation( "UniProtKB:Q9QZ73") "squamous cell carcinoma-related oncogene (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9QZ73") "testis-specific protein 3 (mouse)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9QZ73") Annotation( ) "Dcun1d1") AnnotationAssertion(Annotation( "UniProtKB:Q9QZ73") Annotation( ) "Dcun1l1") AnnotationAssertion(Annotation( "UniProtKB:Q9QZ73") Annotation( ) "Rp42") +AnnotationAssertion(Annotation( "UniProtKB:Q9QZ73") Annotation( ) "SCCRO") AnnotationAssertion(Annotation( "UniProtKB:Q9QZ73") Annotation( ) "Tes3") AnnotationAssertion( "PR:Q9QZ73") AnnotationAssertion(rdfs:comment "Category=organism-gene.") @@ -340444,7 +341556,6 @@ AnnotationAssertion(Annotation( "UniProtKB:Q9QZR0") AnnotationAssertion(Annotation( "UniProtKB:Q9QZR0") "RING finger protein 25 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9QZR0") "RING finger protein AO7 (mouse)") -AnnotationAssertion(Annotation( "UniProtKB:Q9QZR0") "RING-type E3 ubiquitin transferase RNF25 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mRNF25") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9QZR0") Annotation( ) "Rnf25") @@ -340623,7 +341734,7 @@ SubClassOf( ObjectSomeValuesFrom( (basal cell adhesion molecule (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9R069") Annotation( "PANTHER:PTHR11973:SF3") Annotation( "PRO:DNx") "A basal cell adhesion molecule that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9R069") Annotation( "PRO:DNx") "A basal cell adhesion molecule that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9R069") AnnotationAssertion(Annotation( "UniProtKB:Q9R069") "B-CAM cell surface glycoprotein (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9R069") "CD239 (mouse)") @@ -342959,6 +344070,7 @@ SubClassOf( ObjectSomeValuesFrom( (switch-associated protein 70 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9UH65") "A switch-associated protein 70 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9UH65 located_in GO:0005829") "Reactome:R-HSA-9690929") AnnotationAssertion( "UniProtKB:Q9UH65") AnnotationAssertion(Annotation( "UniProtKB:Q9UH65") "SWAP-70 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hSWAP70") @@ -343217,9 +344329,9 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (cell surface hyaluronidase (human)) +# Class: (inactive cell surface hyaluronidase CEMIP2 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9UHN6") "A cell surface hyaluronidase that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9UHN6") "A cell surface hyaluronidase CEMIP2 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q9UHN6") AnnotationAssertion(Annotation( "UniProtKB:Q9UHN6") "cell migration-inducing hyaluronidase 2 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCEMIP2") @@ -343230,7 +344342,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q9UHN6") Annotation( ) "TMEM2") AnnotationAssertion( "PR:Q9UHN6") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "cell surface hyaluronidase (human)") +AnnotationAssertion(rdfs:label "inactive cell surface hyaluronidase CEMIP2 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -344305,6 +345417,7 @@ SubClassOf( ObjectSomeValuesFrom( (calcipressin-3 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9UKA8") "A calcipressin-3 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9UKA8 located_in GO:0005829") "Reactome:R-HSA-9728800") AnnotationAssertion( "UniProtKB:Q9UKA8") AnnotationAssertion(Annotation( "UniProtKB:Q9UKA8") "Down syndrome candidate region 1-like protein 2 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9UKA8") "MCIP3 (human)") @@ -345837,6 +346950,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q9UNA1") "A Rho GTPase-activating protein 26 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q9UNA1 located_in GO:0005829") "Reactome:R-HSA-195189") AnnotationAssertion( "UniProtKB:Q9UNA1") +AnnotationAssertion(Annotation( "UniProtKB:Q9UNA1") "GRAF1 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9UNA1") "GTPase regulator associated with focal adhesion kinase (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9UNA1") "Rho-type GTPase-activating protein 26 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hARHGAP26") @@ -346118,9 +347232,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q9UNW1") AnnotationAssertion(Annotation( "UniProtKB:Q9UNW1") "2,3-BPG phosphatase (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9UNW1") "2,3-bisphosphoglycerate 3-phosphatase (human)") -AnnotationAssertion(Annotation( "UniProtKB:Q9UNW1") "Ins(1,3,4,5)P(4) 3-phosphatase (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hMINPP1") -AnnotationAssertion(Annotation( "UniProtKB:Q9UNW1") "inositol (1,3,4,5)-tetrakisphosphate 3-phosphatase (human)") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9UNW1") Annotation( ) "MINPP1") AnnotationAssertion(Annotation( "UniProtKB:Q9UNW1") Annotation( ) "MIPP") @@ -346133,11 +347245,12 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (60S ribosomal protein L26-like 1 (human)) +# Class: (ribosomal protein uL24-like (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9UNX3") "A 60S ribosomal protein L26-like 1 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9UNX3") "A ribosomal protein uL24-like that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q9UNX3 located_in GO:0005829") "Reactome:R-HSA-72438") AnnotationAssertion( "UniProtKB:Q9UNX3") +AnnotationAssertion(Annotation( "UniProtKB:Q9UNX3") "60S ribosomal protein L26-like 1 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hRPL26L1") AnnotationAssertion(Annotation( "UniProtKB:Q9UNX3") "large ribosomal subunit protein uL24-like 1 (human)") AnnotationAssertion( "protein") @@ -346145,7 +347258,7 @@ AnnotationAssertion(Annotation( "UniProtKB:Q9UNX3") Annotation( ) "RPL26P1") AnnotationAssertion( "PR:Q9UNX3") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "60S ribosomal protein L26-like 1 (human)") +AnnotationAssertion(rdfs:label "ribosomal protein uL24-like (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -346632,7 +347745,7 @@ SubClassOf( ObjectSomeValuesFrom( (LIM domain-binding protein 2 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10378:SF8") Annotation( "PRO:DNx") "A LIM domain-binding protein 2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A LIM domain-binding protein 2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9W676") AnnotationAssertion(Annotation( "UniProtKB:Q9W676") "CLIM-1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q9W676") "LDB-2 (chicken)") @@ -346654,7 +347767,7 @@ SubClassOf( ObjectSomeValuesFrom( (ataxin-3 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9W689") Annotation( "PANTHER:PTHR14159:SF0") Annotation( "PRO:DNx") "An ataxin-3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9W689") Annotation( "PRO:DNx") "An ataxin-3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9W689") AnnotationAssertion(Annotation( "UniProtKB:Q9W689") "Machado-Joseph disease protein 1 homolog (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-ATXN3") @@ -346673,7 +347786,7 @@ SubClassOf( ObjectSomeValuesFrom( (mimecan (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9W6H0") Annotation( "PANTHER:PTHR24371:SF35") Annotation( "PRO:DNx") "A mimecan that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9W6H0") Annotation( "PRO:DNx") "A mimecan that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9W6H0") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-OGN") AnnotationAssertion(Annotation( "UniProtKB:Q9W6H0") "osteoglycin (chicken)") @@ -346708,7 +347821,7 @@ SubClassOf( ObjectSomeValuesFrom( (receptor-type tyrosine-protein phosphatase eta (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR19134:SF73") Annotation( "PRO:DNx") "A receptor-type tyrosine-protein phosphatase eta that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:WCB") "A receptor-type tyrosine-protein phosphatase eta that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9W6V5") AnnotationAssertion(Annotation( "UniProtKB:Q9W6V5") "HPTP eta (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q9W6V5") "R-PTP-J (chicken)") @@ -346730,7 +347843,7 @@ SubClassOf( ObjectSomeValuesFrom( (hypoxanthine-guanine phosphoribosyltransferase (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR22573:SF8") Annotation( "PRO:DNx") "A hypoxanthine-guanine phosphoribosyltransferase that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9W719") Annotation( "PRO:DNx") "A hypoxanthine-guanine phosphoribosyltransferase that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9W719") AnnotationAssertion(Annotation( "UniProtKB:Q9W719") "HGPRT (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q9W719") "HGPRTase (chicken)") @@ -346749,7 +347862,7 @@ SubClassOf( ObjectSomeValuesFrom( (transcription factor SOX-10 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9W757") Annotation( "PANTHER:PTHR10270:SF106") Annotation( "PRO:DNx") "A transcription factor SOX-10 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9W757") Annotation( "PRO:DNx") "A transcription factor SOX-10 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9W757") AnnotationAssertion(Annotation( "UniProtKB:Q9W757") "cSOX10 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SOX10") @@ -346766,7 +347879,7 @@ SubClassOf( ObjectSomeValuesFrom( (spondin-1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11311:SF2") Annotation( "PRO:DNx") "A spondin-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9W770") Annotation( "PRO:DNx") "A spondin-1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9W770") AnnotationAssertion(Annotation( "UniProtKB:Q9W770") "F-spondin (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SPON1") @@ -346783,7 +347896,7 @@ SubClassOf( ObjectSomeValuesFrom( (proheparin-binding EGF-like growth factor (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9W7C5") Annotation( "PANTHER:PTHR10740:SF4") Annotation( "PRO:DNx") "A proheparin-binding EGF-like growth factor that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9W7C5") Annotation( "PRO:DNx") "A proheparin-binding EGF-like growth factor that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9W7C5") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-HBEGF") AnnotationAssertion( "protein") @@ -347471,7 +348584,7 @@ SubClassOf( ObjectSomeValuesFrom( (C-X-C motif chemokine 14 (mouse)) -AnnotationAssertion(Annotation( "OMA:Q9WUQ5") Annotation( "PANTHER:PTHR15188:SF0") Annotation( "PRO:DNx") "A C-X-C motif chemokine 14 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:Q9WUQ5") Annotation( "PRO:DNx") "A C-X-C motif chemokine 14 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:Q9WUQ5") AnnotationAssertion(Annotation( "UniProtKB:Q9WUQ5") "B-cell and monocyte-activating chemokine (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9WUQ5") "MIP-2G (mouse)") @@ -347610,6 +348723,27 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (C-C motif chemokine 17 (mouse)) + +AnnotationAssertion(Annotation( "OMA:Q9WUZ6") Annotation( "PRO:DNx") "A C-C motif chemokine 17 that is encoded in the genome of mouse.") +AnnotationAssertion( "UniProtKB:Q9WUZ6") +AnnotationAssertion(Annotation( "UniProtKB:Q9WUZ6") "ABCD-2 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q9WUZ6") "CC chemokine TARC (mouse)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCCL17") +AnnotationAssertion(Annotation( "UniProtKB:Q9WUZ6") "small-inducible cytokine A17 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q9WUZ6") "thymus and activation-regulated chemokine (mouse)") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q9WUZ6") Annotation( ) "Ccl17") +AnnotationAssertion(Annotation( "UniProtKB:Q9WUZ6") Annotation( ) "Tarc") +AnnotationAssertion( "PR:Q9WUZ6") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "C-C motif chemokine 17 (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (protein FAM50A (mouse)) AnnotationAssertion(Annotation( "OMA:Q9WV03") Annotation( "PRO:DNx") "A protein FAM50A that is encoded in the genome of mouse.") @@ -348415,17 +349549,20 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (HERV-H LTR-associating protein 3 (human)) +# Class: (putative uncharacterized protein ANKRD13C-DT (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9XRX5") "A HERV-H LTR-associating protein 3 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9XRX5") "A putative uncharacterized protein ANKRD13C-DT that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q9XRX5") +AnnotationAssertion(Annotation( "UniProtKB:Q9XRX5") "ANKRD13C divergent transcript (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q9XRX5") "HERV-H LTR-associating protein 3 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hHHLA3") AnnotationAssertion(Annotation( "UniProtKB:Q9XRX5") "human endogenous retrovirus-H long terminal repeat-associating protein 3 (human)") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:Q9XRX5") Annotation( ) "ANKRD13C-DT") AnnotationAssertion(Annotation( "UniProtKB:Q9XRX5") Annotation( ) "HHLA3") AnnotationAssertion( "PR:Q9XRX5") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "HERV-H LTR-associating protein 3 (human)") +AnnotationAssertion(rdfs:label "putative uncharacterized protein ANKRD13C-DT (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -348500,6 +349637,7 @@ AnnotationAssertion(Annotation( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9Y223") Annotation( ) "GLCNE") AnnotationAssertion(Annotation( "UniProtKB:Q9Y223") Annotation( ) "GNE") +AnnotationAssertion(Annotation( "UniProtKB:Q9Y223") Annotation( ) "IBM2") AnnotationAssertion( "PR:Q9Y223") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase (human)") @@ -349007,9 +350145,12 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q9Y2G8") "A DnaJ homolog subfamily C member 16 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q9Y2G8") +AnnotationAssertion(Annotation( "UniProtKB:Q9Y2G8") "ER-resident protein ERdj8 (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q9Y2G8") "endoplasmic reticulum DNA J domain-containing protein 8 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hDNAJC16") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9Y2G8") Annotation( ) "DNAJC16") +AnnotationAssertion(Annotation( "UniProtKB:Q9Y2G8") Annotation( ) "ERDJ8") AnnotationAssertion(Annotation( "UniProtKB:Q9Y2G8") Annotation( ) "KIAA0962") AnnotationAssertion( "PR:Q9Y2G8") AnnotationAssertion(rdfs:comment "Category=organism-gene.") @@ -349311,6 +350452,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q9Y2W7") "A calsenilin that is encoded in the genome of human.") AnnotationAssertion( "DTO:01100092") AnnotationAssertion(Annotation(rdfs:label "PR:Q9Y2W7 located_in GO:0005886") "Reactome:R-HSA-5577044") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9Y2W7 located_in GO:0005654") "Reactome:R-HSA-9640052") AnnotationAssertion( "UniProtKB:Q9Y2W7") AnnotationAssertion(Annotation( "UniProtKB:Q9Y2W7") "A-type potassium channel modulatory protein 3 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9Y2W7") "DRE-antagonist modulator (human)") @@ -350490,6 +351632,7 @@ SubClassOf( ObjectSomeValuesFrom( (BTB/POZ domain-containing protein KCTD3 (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9Y597") "A BTB/POZ domain-containing protein KCTD3 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9Y597 located_in GO:0005886") "Reactome:R-HSA-9714852") AnnotationAssertion( "UniProtKB:Q9Y597") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hKCTD3") AnnotationAssertion(Annotation( "UniProtKB:Q9Y597") "renal carcinoma antigen NY-REN-45 (human)") @@ -350805,6 +351948,7 @@ SubClassOf( ObjectSomeValuesFrom( "PRO:DNx") Annotation( "UniProtKB:Q9Y5N6") "An origin recognition complex subunit 6 that is encoded in the genome of human.") AnnotationAssertion(Annotation(rdfs:label "PR:Q9Y5N6 located_in GO:0005654") "Reactome:R-HSA-68539") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9Y5N6 located_in GO:0005829") "Reactome:R-HSA-9734663") AnnotationAssertion( "UniProtKB:Q9Y5N6") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hORC6") AnnotationAssertion( "protein") @@ -350878,9 +352022,9 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (protein TSSC4 (human)) +# Class: (U5 small nuclear ribonucleoprotein TSSC4 (human)) -AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9Y5U2") "A protein TSSC4 that is encoded in the genome of human.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9Y5U2") "A U5 small nuclear ribonucleoprotein TSSC4 that is encoded in the genome of human.") AnnotationAssertion( "UniProtKB:Q9Y5U2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hTSSC4") AnnotationAssertion(Annotation( "UniProtKB:Q9Y5U2") "tumor-suppressing STF cDNA 4 protein (human)") @@ -350889,7 +352033,7 @@ AnnotationAssertion( "UniProtKB:Q9Y5U2") Annotation( ) "TSSC4") AnnotationAssertion( "PR:Q9Y5U2") AnnotationAssertion(rdfs:comment "Category=organism-gene.") -AnnotationAssertion(rdfs:label "protein TSSC4 (human)") +AnnotationAssertion(rdfs:label "U5 small nuclear ribonucleoprotein TSSC4 (human)") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -351640,6 +352784,7 @@ AnnotationAssertion(Annotation(rdfs:label "PR:Q9Y6G9 located_in GO:0005886") "Reactome:R-HSA-8943213") AnnotationAssertion( "UniProtKB:Q9Y6G9") AnnotationAssertion(Annotation( "UniProtKB:Q9Y6G9") "DLC-A (human)") +AnnotationAssertion(Annotation( "UniProtKB:Q9Y6G9") "DLIC-1 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9Y6G9") "LIC1 (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9Y6G9") "dynein light chain A (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9Y6G9") "dynein light intermediate chain 1, cytosolic (human)") @@ -351817,6 +352962,7 @@ SubClassOf( ObjectSomeValuesFrom( (harmonin (human)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:Q9Y6N9") "A harmonin that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:Q9Y6N9 located_in GO:0005829") "Reactome:R-HSA-9658864") AnnotationAssertion( "UniProtKB:Q9Y6N9") AnnotationAssertion(Annotation( "UniProtKB:Q9Y6N9") "Usher syndrome type-1C protein (human)") AnnotationAssertion(Annotation( "UniProtKB:Q9Y6N9") "antigen NY-CO-38/NY-CO-37 (human)") @@ -352050,7 +353196,7 @@ SubClassOf( ObjectSomeValuesFrom( (B-cell linker protein (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR14098:SF3") Annotation( "PRO:DNx") "A B-cell linker protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A B-cell linker protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9YGC1") AnnotationAssertion(Annotation( "UniProtKB:Q9YGC1") "B-cell adapter SH2 domain-containing protein (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q9YGC1") "SLP-65 (chicken)") @@ -352071,7 +353217,7 @@ SubClassOf( ObjectSomeValuesFrom( (deoxyribonuclease-1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11371:SF7") Annotation( "PRO:DNx") "A deoxyribonuclease-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9YGI5") Annotation( "PRO:DNx") "A deoxyribonuclease-1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9YGI5") AnnotationAssertion(Annotation( "UniProtKB:Q9YGI5") "DNase I (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-DNASE1") @@ -352085,11 +353231,11 @@ EquivalentClasses( ObjectIntersectionO SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (sarcoplasmic/endoplasmic reticulum calcium ATPase 3 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A sarcoplasmic/endoplasmic reticulum calcium ATPase 3 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9YGL9") Annotation( "PRO:DNx") "A sarcoplasmic/endoplasmic reticulum calcium ATPase 3 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9YGL9") AnnotationAssertion(Annotation( "UniProtKB:Q9YGL9") "ChkSERCA3 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q9YGL9") "SERCA3 (chicken)") @@ -352109,7 +353255,7 @@ SubClassOf( ObjectSomeValuesFrom( (TATA box-binding protein-like 1 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q9YGV8") Annotation( "PANTHER:PTHR10126:SF13") Annotation( "PRO:DNx") "A TATA box-binding protein-like 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9YGV8") Annotation( "PRO:DNx") "A TATA box-binding protein-like 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9YGV8") AnnotationAssertion(Annotation( "UniProtKB:Q9YGV8") "TBP-like 1 (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q9YGV8") "TBP-like factor (chicken)") @@ -352128,7 +353274,7 @@ SubClassOf( ObjectSomeValuesFrom( (KH domain-containing RNA-binding protein QKI (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11208:SF8") Annotation( "PRO:DNx") "A KH domain-containing RNA-binding protein QKI that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A KH domain-containing RNA-binding protein QKI that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9YH18") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-QKI") AnnotationAssertion(Annotation( "UniProtKB:Q9YH18") "protein quaking (chicken)") @@ -352145,7 +353291,7 @@ SubClassOf( ObjectSomeValuesFrom( (ornithine transcarbamylase, mitochondrial (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "An ornithine transcarbamylase, mitochondrial that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9YHY9") Annotation( "PRO:DNx") "An ornithine transcarbamylase, mitochondrial that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9YHY9") AnnotationAssertion(Annotation( "UniProtKB:Q9YHY9") "OTCase (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-OTC") @@ -352584,6 +353730,8 @@ AnnotationAssertion(Annotation( "UniProtKB:Q9Z0W1") "NGF receptor (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9Z0W1") "low affinity neurotrophin receptor p75NTR (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9Z0W1") "low-affinity nerve growth factor receptor (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q9Z0W1") "low-affinity nerve growth factor receptor p75NGFR (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:Q9Z0W1") "low-affinity nerve growth factor receptor p75NGR (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mNGFR") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9Z0W1") Annotation( ) "Ngfr") @@ -353990,8 +355138,6 @@ AnnotationAssertion(Annotation( "UniProtKB:Q9Z2L6") AnnotationAssertion(Annotation( "UniProtKB:Q9Z2L6") "2,3-BPG phosphatase (mouse)") AnnotationAssertion(Annotation( "UniProtKB:Q9Z2L6") "2,3-bisphosphoglycerate 3-phosphatase (mouse)") -AnnotationAssertion(Annotation( "UniProtKB:Q9Z2L6") "Ins(1,3,4,5)P(4) 3-phosphatase (mouse)") -AnnotationAssertion(Annotation( "UniProtKB:Q9Z2L6") "inositol (1,3,4,5)-tetrakisphosphate 3-phosphatase (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mMINPP1") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( "UniProtKB:Q9Z2L6") Annotation( ) "MNCb-1572") @@ -354467,33 +355613,243 @@ AnnotationAssertion(rdfs:label "prot SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (CER1 copy 1 (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene CER1 copy 1 in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "Ensembl:ENSGALG00000060895") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "CER1 copy 1 (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (CER1 copy 2 (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene CER1 copy 2 in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "Ensembl:ENSGALG00010016448") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "CER1 copy 2 (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (CER1 copy 3 (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene CER1 copy 3 in chicken.") +# Class: (STK10 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene STK10 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00000002816") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "STK10 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (PMS2 copy 1 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene PMS2 copy 1 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00000003430") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "PMS2 copy 1 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (DCAF12 copy 1 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene DCAF12 copy 1 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00000005800") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "DCAF12 copy 1 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (DSCAML1 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene DSCAML1 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00000007314") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "DSCAML1 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (TYW5 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene TYW5 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00000008145") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "TYW5 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (DTD2 copy 1 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene DTD2 copy 1 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00000009978") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "DTD2 copy 1 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (CARNMT1 copy 1 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene CARNMT1 copy 1 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00000015155") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "CARNMT1 copy 1 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (JUND copy 1 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene JUND copy 1 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00000043641") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "JUND copy 1 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (DTD2 copy 2 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene DTD2 copy 2 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00010005617.1") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "DTD2 copy 2 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (DCAF12 copy 2 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene DCAF12 copy 2 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00010011712.1") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "DCAF12 copy 2 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (CARNMT1 copy 2 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene CARNMT1 copy 2 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00010015413.1") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "CARNMT1 copy 2 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (CER1 copy 1 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene CER1 copy 1 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00010016448.1") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "CER1 copy 1 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (DNASE1 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene DNASE1 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00010016709.1") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "DNASE1 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (SIX6 copy 1 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene SIX6 copy 1 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00010019860.1") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "SIX6 copy 1 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (PMS2 copy 2 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene PMS2 copy 2 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00010021776.1") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "PMS2 copy 2 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (JUND copy 2 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene JUND copy 2 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00010027307.1") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "JUND copy 2 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (DTD2 copy 3 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene DTD2 copy 3 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00015006398") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "DTD2 copy 3 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (ULK3 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene ULK3 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00015012382") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "ULK3 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (SIX6 copy 2 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene SIX6 copy 2 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00015017903") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "SIX6 copy 2 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (JUND copy 3 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene JUND copy 3 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00015022024") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "JUND copy 3 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (PMS2 copy 3 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene PMS2 copy 3 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00015024139") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "PMS2 copy 3 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (DCAF12 copy 3 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene DCAF12 copy 3 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00015029355") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "DCAF12 copy 3 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (CARNMT1 copy 3 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene CARNMT1 copy 3 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "Ensembl:ENSGALG00015030055") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "CARNMT1 copy 3 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (CER1 copy 2 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene CER1 copy 2 in chicken.") AnnotationAssertion( "gene") AnnotationAssertion( "Ensembl:ENSGALG00015030133") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "CER1 copy 3 (chicken)") +AnnotationAssertion(rdfs:label "CER1 copy 2 (chicken)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -357557,13 +358913,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Atp5o (mouse)) +# Class: (Atp5po (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Atp5o in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Atp5po in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:106341") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Atp5o (mouse)") +AnnotationAssertion(rdfs:label "Atp5po (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -358677,13 +360033,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Atp5j (mouse)) +# Class: (Atp5pf (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Atp5j in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Atp5pf in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:107777") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Atp5j (mouse)") +AnnotationAssertion(rdfs:label "Atp5pf (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -360067,16 +361423,6 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Reg3g (mouse)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Reg3g in mouse.") -AnnotationAssertion( "gene") -AnnotationAssertion( "MGI:109406") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Reg3g (mouse)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (Oaz1 (mouse)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Oaz1 in mouse.") @@ -360727,6 +362073,16 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (Nrg3 (mouse)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Nrg3 in mouse.") +AnnotationAssertion( "gene") +AnnotationAssertion( "MGI:1097165") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "Nrg3 (mouse)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (Tcl1 (mouse)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Tcl1 in mouse.") @@ -361777,13 +363133,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Atpif1 (mouse)) +# Class: (Atp5if1 (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Atpif1 in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Atp5if1 in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:1196457") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Atpif1 (mouse)") +AnnotationAssertion(rdfs:label "Atp5if1 (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -363817,6 +365173,16 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (Ccl17 (mouse)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Ccl17 in mouse.") +AnnotationAssertion( "gene") +AnnotationAssertion( "MGI:1329039") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "Ccl17 (mouse)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (Rngtt (mouse)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Rngtt in mouse.") @@ -364297,6 +365663,16 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (Elf5 (mouse)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Elf5 in mouse.") +AnnotationAssertion( "gene") +AnnotationAssertion( "MGI:1335079") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "Elf5 (mouse)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (Zbtb7a (mouse)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Zbtb7a in mouse.") @@ -365027,13 +366403,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Chil1 (mouse)) +# Class: (Chi3l1 (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Chil1 in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Chi3l1 in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:1340899") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Chil1 (mouse)") +AnnotationAssertion(rdfs:label "Chi3l1 (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -366817,6 +368193,16 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (Uba7 (mouse)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Uba7 in mouse.") +AnnotationAssertion( "gene") +AnnotationAssertion( "MGI:1349462") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "Uba7 (mouse)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (St6galnac5 (mouse)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene St6galnac5 in mouse.") @@ -367627,13 +369013,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Akr1b3 (mouse)) +# Class: (Akr1b1 (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Akr1b3 in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Akr1b1 in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:1353494") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Akr1b3 (mouse)") +AnnotationAssertion(rdfs:label "Akr1b1 (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -368407,13 +369793,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Ctps (mouse)) +# Class: (Ctps1 (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Ctps in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Ctps1 in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:1858304") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Ctps (mouse)") +AnnotationAssertion(rdfs:label "Ctps1 (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -371727,13 +373113,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Efcab1 (mouse)) +# Class: (Clxn (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Efcab1 in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Clxn in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:1914043") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Efcab1 (mouse)") +AnnotationAssertion(rdfs:label "Clxn (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -375177,13 +376563,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (1810013L24Rik (mouse)) +# Class: (Hapstr1 (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene 1810013L24Rik in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Hapstr1 in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:1916303") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "1810013L24Rik (mouse)") +AnnotationAssertion(rdfs:label "Hapstr1 (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -375597,13 +376983,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (1700029I15Rik (mouse)) +# Class: (Frey1 (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene 1700029I15Rik in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Frey1 in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:1916742") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "1700029I15Rik (mouse)") +AnnotationAssertion(rdfs:label "Frey1 (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -378647,6 +380033,16 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (Fam151b (mouse)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Fam151b in mouse.") +AnnotationAssertion( "gene") +AnnotationAssertion( "MGI:1921192") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "Fam151b (mouse)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (Klhl14 (mouse)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Klhl14 in mouse.") @@ -380317,13 +381713,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Wdyhv1 (mouse)) +# Class: (Ntaq1 (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Wdyhv1 in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Ntaq1 in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:1924023") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Wdyhv1 (mouse)") +AnnotationAssertion(rdfs:label "Ntaq1 (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -381637,13 +383033,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Spata5 (mouse)) +# Class: (Afg2a (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Spata5 in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Afg2a in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:1927170") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Spata5 (mouse)") +AnnotationAssertion(rdfs:label "Afg2a (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -381847,13 +383243,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Atp5j2 (mouse)) +# Class: (Atp5mf (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Atp5j2 in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Atp5mf in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:1927558") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Atp5j2 (mouse)") +AnnotationAssertion(rdfs:label "Atp5mf (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -382097,6 +383493,16 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (Stx5a (mouse)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Stx5a in mouse.") +AnnotationAssertion( "gene") +AnnotationAssertion( "MGI:1928483") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "Stx5a (mouse)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (Nudt3 (mouse)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Nudt3 in mouse.") @@ -383587,13 +384993,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Kars (mouse)) +# Class: (Kars1 (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Kars in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Kars1 in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:1934754") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Kars (mouse)") +AnnotationAssertion(rdfs:label "Kars1 (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -384307,13 +385713,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Spg20 (mouse)) +# Class: (Spart (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Spg20 in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Spart in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:2139806") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Spg20 (mouse)") +AnnotationAssertion(rdfs:label "Spart (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -385337,13 +386743,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Prrxl1 (mouse)) +# Class: (Drgx (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Prrxl1 in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Drgx in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:2148204") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Prrxl1 (mouse)") +AnnotationAssertion(rdfs:label "Drgx (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -389227,13 +390633,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Zadh2 (mouse)) +# Class: (Ptgr3 (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Zadh2 in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Ptgr3 in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:2444835") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Zadh2 (mouse)") +AnnotationAssertion(rdfs:label "Ptgr3 (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -391477,13 +392883,13 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Fam102b (mouse)) +# Class: (Eeig2 (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Fam102b in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Eeig2 in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:3036259") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Fam102b (mouse)") +AnnotationAssertion(rdfs:label "Eeig2 (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -391637,6 +393043,16 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (Actmap (mouse)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Actmap in mouse.") +AnnotationAssertion( "gene") +AnnotationAssertion( "MGI:3041247") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "Actmap (mouse)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (Serpinb13 (mouse)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Serpinb13 in mouse.") @@ -392317,6 +393733,16 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (Spag11b (mouse)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Spag11b in mouse.") +AnnotationAssertion( "gene") +AnnotationAssertion( "MGI:3647173") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "Spag11b (mouse)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (Gimd1 (mouse)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Gimd1 in mouse.") @@ -392457,6 +393883,16 @@ AnnotationAssertion(rdfs:label ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (Tgfbr3l (mouse)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Tgfbr3l in mouse.") +AnnotationAssertion( "gene") +AnnotationAssertion( "MGI:3833469") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "Tgfbr3l (mouse)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (Yy2 (mouse)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Yy2 in mouse.") @@ -392697,13 +394133,13 @@ AnnotationAssertion(rdfs:label SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Adssl1 (mouse)) +# Class: (Adss1 (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Adssl1 in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Adss1 in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:87947") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Adssl1 (mouse)") +AnnotationAssertion(rdfs:label "Adss1 (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -393817,6 +395253,16 @@ AnnotationAssertion(rdfs:label SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (Cntf (mouse)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Cntf in mouse.") +AnnotationAssertion( "gene") +AnnotationAssertion( "MGI:88439") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "Cntf (mouse)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (Col10a1 (mouse)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Col10a1 in mouse.") @@ -396307,13 +397753,13 @@ AnnotationAssertion(rdfs:label SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Hprt (mouse)) +# Class: (Hprt1 (mouse)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Hprt in mouse.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Hprt1 in mouse.") AnnotationAssertion( "gene") AnnotationAssertion( "MGI:96217") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "Hprt (mouse)") +AnnotationAssertion(rdfs:label "Hprt1 (mouse)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400067,6 +401513,16 @@ AnnotationAssertion(rdfs:label SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (Xbp1 (mouse)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Xbp1 in mouse.") +AnnotationAssertion( "gene") +AnnotationAssertion( "MGI:98970") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "Xbp1 (mouse)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (Xdh (mouse)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene Xdh in mouse.") @@ -400877,36 +402333,6 @@ AnnotationAssertion(rdfs:label "TRA SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (MAX (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene MAX in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "NCBIGene:100858676") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "MAX (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (PMS2 (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene PMS2 in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "NCBIGene:101752182") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "PMS2 (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (JUND (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene JUND in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "NCBIGene:107055370") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "JUND (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (SELM (human)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene SELM in human.") @@ -401917,16 +403343,6 @@ AnnotationAssertion(rdfs:label "EURL ( SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (GATM (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene GATM in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "NCBIGene:395504") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "GATM (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (RDX (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene RDX in chicken.") @@ -402137,16 +403553,6 @@ AnnotationAssertion(rdfs:label "ATP2A3 SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (DNASE1 (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene DNASE1 in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "NCBIGene:395725") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "DNASE1 (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (PCBD1 (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene PCBD1 in chicken.") @@ -402267,16 +403673,6 @@ AnnotationAssertion(rdfs:label "FMOD ( SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (SIX6 (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene SIX6 in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "NCBIGene:395843") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "SIX6 (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (ALDH1A2 (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene ALDH1A2 in chicken.") @@ -402507,16 +403903,6 @@ AnnotationAssertion(rdfs:label "CHST3 SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (ACTN4 (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene ACTN4 in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "NCBIGene:396024") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "ACTN4 (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (XDH (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene XDH in chicken.") @@ -403497,6 +404883,16 @@ AnnotationAssertion(rdfs:label "HBB (c SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (CNTF (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene CNTF in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "NCBIGene:396488") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "CNTF (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (GLUL (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene GLUL in chicken.") @@ -403767,6 +405163,16 @@ AnnotationAssertion(rdfs:label "CCK (c SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (LINGO1 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene LINGO1 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "NCBIGene:415344") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "LINGO1 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (HMG20A (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene HMG20A in chicken.") @@ -404277,6 +405683,16 @@ AnnotationAssertion(rdfs:label "GXYLT1 SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (NEL (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene NEL in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "NCBIGene:417799") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "NEL (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (LUM (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene LUM in chicken.") @@ -404797,6 +406213,16 @@ AnnotationAssertion(rdfs:label "NT5C3B SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (EIF1 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene EIF1 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "NCBIGene:420037") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "EIF1 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (MVP (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene MVP in chicken.") @@ -405037,16 +406463,6 @@ AnnotationAssertion(rdfs:label "KLHL14 SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (MAPRE2 (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene MAPRE2 in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "NCBIGene:421105") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "MAPRE2 (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (UBE2V2 (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene UBE2V2 in chicken.") @@ -405147,16 +406563,6 @@ AnnotationAssertion(rdfs:label "FOSL2 SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (MDGA1 (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene MDGA1 in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "NCBIGene:421431") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "MDGA1 (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (TTC27 (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene TTC27 in chicken.") @@ -405257,13 +406663,13 @@ AnnotationAssertion(rdfs:label "LRRC59 SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (SLC9A3R1 (chicken)) +# Class: (NHERF1 (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene SLC9A3R1 in chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene NHERF1 in chicken.") AnnotationAssertion( "gene") AnnotationAssertion( "NCBIGene:422108") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "SLC9A3R1 (chicken)") +AnnotationAssertion(rdfs:label "NHERF1 (chicken)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405787,6 +407193,16 @@ AnnotationAssertion(rdfs:label "RPL30 SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (MYBPC2 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene MYBPC2 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "NCBIGene:425457") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "MYBPC2 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (YWHAZ (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene YWHAZ in chicken.") @@ -405937,13 +407353,13 @@ AnnotationAssertion(rdfs:label "LYSMD3 SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (FAM172A (chicken)) +# Class: (ARB2A (chicken)) -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene FAM172A in chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene ARB2A in chicken.") AnnotationAssertion( "gene") AnnotationAssertion( "NCBIGene:427109") AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "FAM172A (chicken)") +AnnotationAssertion(rdfs:label "ARB2A (chicken)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405967,16 +407383,6 @@ AnnotationAssertion(rdfs:label "SLC30A SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (CARNMT1 (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene CARNMT1 in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "NCBIGene:427256") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "CARNMT1 (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (ALDOB (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene ALDOB in chicken.") @@ -405987,16 +407393,6 @@ AnnotationAssertion(rdfs:label "ALDOB SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (INIP (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene INIP in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "NCBIGene:427331") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "INIP (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (NCBP1 (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene NCBP1 in chicken.") @@ -406017,16 +407413,6 @@ AnnotationAssertion(rdfs:label "TNFAIP SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (DCAF12 (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene DCAF12 in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "NCBIGene:427396") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "DCAF12 (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (CCPG1 (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene CCPG1 in chicken.") @@ -406087,16 +407473,6 @@ AnnotationAssertion(rdfs:label "USP28 SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (HYOU1 (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene HYOU1 in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "NCBIGene:428251") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "HYOU1 (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (IL10 (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene IL10 in chicken.") @@ -406327,16 +407703,6 @@ AnnotationAssertion(rdfs:label "TMEM16 SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (DTD2 (chicken)) - -AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene DTD2 in chicken.") -AnnotationAssertion( "gene") -AnnotationAssertion( "NCBIGene:770817") -AnnotationAssertion(rdfs:comment "Category=external.") -AnnotationAssertion(rdfs:label "DTD2 (chicken)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (PHB2 (chicken)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene PHB2 in chicken.") @@ -406387,6 +407753,16 @@ AnnotationAssertion(rdfs:label "RABEPK SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (MYL11 (chicken)) + +AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene MYL11 in chicken.") +AnnotationAssertion( "gene") +AnnotationAssertion( "NCBIGene:776775") +AnnotationAssertion(rdfs:comment "Category=external.") +AnnotationAssertion(rdfs:label "MYL11 (chicken)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (HDGFRP2 (human)) AnnotationAssertion(Annotation( "PRO:DNx") "A protein coding gene HDGFRP2 in human.") diff --git a/seed.txt b/seed.txt index 3990925..152ba0e 100644 --- a/seed.txt +++ b/seed.txt @@ -1100,6 +1100,7 @@ PR:000005657 PR:000005660 PR:000005661 PR:000005662 +PR:000005663 PR:000005668 PR:000005671 PR:000005673 @@ -3951,6 +3952,7 @@ PR:000015793 PR:000015794 PR:000015795 PR:000015796 +PR:000015797 PR:000015798 PR:000015799 PR:000015800