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MANIFEST
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MANIFEST
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MANIFEST
README.md
LICENSE
Todo
Changes
Makefile.PL
lib/GSI/bamqc.pm
lib/GSI/jsonToGraphs.pm
lib/GSI/RunReport.pm
lib/GSI/css/runreport.css
t/test/neat_5x_EX_hg19_chr21.bam
t/test/bamqc_vanilla/expected_output.json
t/test/bamqc_vanilla/expected_output.txt
t/test/report_histo_coverage/expected.graphs/readPie.png.Rcode
t/test/report_histo_coverage/expected.graphs/nonCollapsedCover.png.Rcode
t/test/report_histo_coverage/expected.graphs/hardCycle.png.Rcode
t/test/report_histo_coverage/expected.graphs/qualCycle.png.Rcode
t/test/report_histo_coverage/expected.graphs/collapsedCover.png.Rcode
t/test/report_histo_coverage/expected.graphs/softCycle.png.Rcode
t/test/report_histo_coverage/expected.graphs/readLength.png.Rcode
t/test/report_histo_coverage/expected.graphs/indelCycle.png.Rcode
t/test/report_histo_coverage/expected.graphs/misCycle.png.Rcode
t/test/report_histo_coverage/expected.graphs/qualHist.png.Rcode
t/test/report_histo_coverage/expected.graphs/insert.png.Rcode
t/test/report_histo_coverage/test.json
t/test/report_histo_coverage/expected_report.tsv
t/test/report_histo_coverage/expected_output.html
t/test/bamqc_vanilla_jsonstring/expected_output.json
t/test/bamqc_vanilla_jsonstring/expected_output.txt
t/test/report_vanilla/test.json
t/test/report_vanilla/expected_report.tsv
t/test/report_vanilla/expected_output.html
t/test/report_nocollapse/expected.graphs/readPie.png.Rcode
t/test/report_nocollapse/expected.graphs/nonCollapsedCover.png.Rcode
t/test/report_nocollapse/expected.graphs/hardCycle.png.Rcode
t/test/report_nocollapse/expected.graphs/qualCycle.png.Rcode
t/test/report_nocollapse/expected.graphs/collapsedCover.png.Rcode
t/test/report_nocollapse/expected.graphs/softCycle.png.Rcode
t/test/report_nocollapse/expected.graphs/readLength.png.Rcode
t/test/report_nocollapse/expected.graphs/indelCycle.png.Rcode
t/test/report_nocollapse/expected.graphs/misCycle.png.Rcode
t/test/report_nocollapse/expected.graphs/qualHist.png.Rcode
t/test/report_nocollapse/expected.graphs/insert.png.Rcode
t/test/report_nocollapse/test.json
t/test/report_nocollapse/expected_report.tsv
t/test/report_nocollapse/expected_output.html
t/test/bamqc_coverage/expected_output.json
t/test/bamqc_coverage/expected_output.txt
t/test/metadata.json
t/test/SureSelect_All_Exon_V4_Covered_Sorted_chr21.bed
t/test/report_coverage/test.json
t/test/report_coverage/expected_report.tsv
t/test/report_coverage/expected_output.html
t/test/report_most_opts/expected.graphs/readPie.png.Rcode
t/test/report_most_opts/expected.graphs/hardCycle.png.Rcode
t/test/report_most_opts/expected.graphs/qualCycle.png.Rcode
t/test/report_most_opts/expected.graphs/softCycle.png.Rcode
t/test/report_most_opts/expected.graphs/readLength.png.Rcode
t/test/report_most_opts/expected.graphs/indelCycle.png.Rcode
t/test/report_most_opts/expected.graphs/misCycle.png.Rcode
t/test/report_most_opts/expected.graphs/qualHist.png.Rcode
t/test/report_most_opts/expected.graphs/insert.png.Rcode
t/test/report_most_opts/test.json
t/test/report_most_opts/expected_report.tsv
t/test/report_most_opts/expected_output.html
t/test/bamqc_histo_coverage/expected_output.json
t/test/bamqc_histo_coverage/test.hist
t/test/bamqc_histo_coverage/expected_output.txt
t/test/report_coverage_graphs/expected.graphs/readPie.png.Rcode
t/test/report_coverage_graphs/expected.graphs/nonCollapsedCover.png.Rcode
t/test/report_coverage_graphs/expected.graphs/hardCycle.png.Rcode
t/test/report_coverage_graphs/expected.graphs/qualCycle.png.Rcode
t/test/report_coverage_graphs/expected.graphs/collapsedCover.png.Rcode
t/test/report_coverage_graphs/expected.graphs/softCycle.png.Rcode
t/test/report_coverage_graphs/expected.graphs/readLength.png.Rcode
t/test/report_coverage_graphs/expected.graphs/indelCycle.png.Rcode
t/test/report_coverage_graphs/expected.graphs/misCycle.png.Rcode
t/test/report_coverage_graphs/expected.graphs/qualHist.png.Rcode
t/test/report_coverage_graphs/expected.graphs/insert.png.Rcode
t/test/report_coverage_graphs/test.json
t/test/report_coverage_graphs/expected_report.tsv
t/test/report_coverage_graphs/expected_output.html
t/test/neat_5x_EX_hg19_runInfo.txt
t/001_load.t
t/003_test_report.t
t/002_test_bamqc.t