build.xml

<!--
build.xml

Master ant build file for Bio-Formats.
Download Apache Ant from http://ant.apache.org/.
Type "ant -p" for a list of targets.

===============================================================================
This build file handles the following components.
For more information on a component, see the
build.properties file in that component's subtree.

Bio-Formats
    A library for reading and writing popular microscopy file formats
    -=-
    JAR file:      bio-formats.jar
    Path:          components/bio-formats
    Project deps:  Formats Common, OME-XML Java library, JAI Image I/O Tools,
                   MDB Tools (Java port), Apache Jakarta POI
    Library deps:  JGoodies Forms, Logback, NetCDF,
                   Simple Logging Facade for Java API, TestNG
    Optional:      Xalan Serializer, Xalan
    License:       GPL


Plugins for ImageJ
    A collection of plugins for ImageJ, including the Bio-Formats Importer,
    Bio-Formats Exporter, Bio-Formats Macro Extensions, Data Browser, Stack
    Colorizer and Stack Slicer
    -=-
    JAR file:      bio-formats_plugins.jar
    Path:          components/bio-formats-plugins
    Project deps:  Bio-Formats, Formats Common, OME-XML Java library
    Library deps:  JGoodies Forms, ImageJ, JUnit, Logback
    Optional:      (none)
    License:       GPL

OME-XML Java library
    A library for working with OME-XML metadata structures
    -=-
    JAR file:      ome-xml.jar
    Path:          components/ome-xml
    Project deps:  (none)
    Library deps:  Simple Logging Facade for Java API, TestNG
    Optional:      Logback
    License:       GPL

Testing framework
    Framework for automated and manual testing of software components
    -=-
    JAR file:      bio-formats-testing-framework.jar
    Path:          components/test-suite
    Project deps:  Bio-Formats, Formats Common, OME I/O
    Library deps:  Logback, Simple Logging Facade for Java API, TestNG
    Optional:      (none)
    License:       BSD

===============================================================================
The following components are forks of third party projects:

JAI Image I/O Tools
    Java API to handle JPEG and JPEG2000 files
    -=-
    JAR file:      jai_imageio.jar
    Path:          components/forks/jai
    Project deps:  (none)
    Optional:      (none)
    License:       BSD
    Project URL:   http://jai-imageio.dev.java.net/
    Notes:         Used by Bio-Formats to read images compressed with JPEG2000
                   and lossless JPEG. Modified from the 2008-10-14 source to
                   include support for the YCbCr color space. Several files in
                   the com.sun.media.jai packages were removed, as they are not
                   needed by Bio-Formats, and created an additional dependency.
                   This component will be removed once our changes have been
                   added to the official JAI CVS repository.

===============================================================================
The following external dependencies (in the jar folder) may be required:
Ant-Contrib
    JAR file:  ant-contrib-1.0b3.jar
    URL:       http://ant-contrib.sourceforge.net/
    Notes:     used by tools target to iterate over JAR files ("for" task)
    License:   Apache

Checkstyle
    JAR file:  checkstyle-all-5.0.jar
    URL:       http://checkstyle.sourceforge.net/
    Notes:     used by style Ant target to check source code style conventions
    License:   LGPL

Apache Jakarta Commons HttpClient
    JAR file:  commons-httpclient-2.0-rc2.jar
    URL:       http://jakarta.apache.org/commons/httpclient/
    Notes:     required for OME-Java to communicate with OME servers
    License:   Apache

Apache Jakarta Commons Logging
    JAR file:  commons-logging.jar
    URL:       http://jakarta.apache.org/commons/logging/
    Notes:     used by OME-Java
    License:   Apache

FindBugs Ant task
    JAR file:  findbugs-ant.jar
    URL:       http://findbugs.sourceforge.net/
    Notes:     used by findbugs Ant target to check for program bugs
    License:   LGPL

JGoodies Forms
    JAR file:  jgoodies-forms-1.7.2.jar
    URL:       http://www.jgoodies.com/freeware/forms/index.html
    Notes:     used for layout by Data Browser and OME Notes
    License:   BSD

ImageJ
    JAR file:  ij.jar
    URL:       http://rsb.info.nih.gov/ij/
    Notes:     used by plugins for ImageJ and OME plugins for ImageJ
    License:   Public domain

Logback
    JAR file:  logback-core-1.1.1.jar, logback-classic-1.1.1.jar
    URL:       http://logback.qos.ch
    Notes:     (none)
    License:   EPL v1.0 and LGPL 2.1

Native library loader
    JAR file:  native-lib-loader-2.4.0.jar
    URL:       http://github.com/scijava/native-lib-loader
    Notes:     required for loading native libraries
    License:   BSD

NetCDF
    JAR file:  netcdf-4.3.22.jar
    URL:       http://www.unidata.ucar.edu/software/netcdf-java/
    Notes:     used by Bio-Formats via reflection for HDF support (Imaris 5.5)
    License:   LGPL

Simple Logging Facade for Java API
    JAR file:  slf4j-api-1.7.6.jar
    URL:       http://www.slf4j.org/
    Notes:     used for all logging in loci.*
    License:   BSD

Xalan Serializer
    JAR file:  serializer-2.7.2.jar
    URL:       http://xalan.apache.org/xalan-j/
    Notes:     used for OME-XML transformations
    License:   Apache

TestNG
    JAR file:  testng-6.8.jar
    URL:       http://testng.org/
    Notes:     testing framework used for the automated test suite
    License:   Apache

Apache Velocity
    JAR file:  velocity-1.6.3-dep.jar
    URL:       http://velocity.apache.org/
    Notes:     used to autogenerate the loci.formats.meta and loci.formats.ome
               Bio-Formats packages
    License:   Apache

Xalan
    JAR file:  xalan-2.7.2.jar
    URL:       http://xalan.apache.org/xalan-j/
    Notes:     used for OME-XML transformations
    License:   Apache

Apache XML-RPC
    JAR file:  xmlrpc-1.2-b1.jar
    URL:       http://ws.apache.org/xmlrpc/
    Notes:     used by OME-Java library to communicate with OME servers
    License:   Apache
-->

<project name="Bio-Formats" default="jars" basedir="." xmlns:resolver="antlib:org.apache.maven.resolver.ant">
  <description>
    Master build file for all Bio-Formats software components
  </description>
  <import file="ant/toplevel.xml"/>
  <taskdef uri="antlib:org.apache.maven.resolver.ant" resource="org/apache/maven/resolver/ant/antlib.xml">
    <classpath>
      <fileset dir="${root.dir}/jar" includes="maven-resolver-ant-tasks-*.jar"/>
    </classpath>
  </taskdef>

  <target name="install-pom"  description="generate top-level POM file">
    <resolver:pom file="pom.xml" id="pom"/>
    <resolver:install pomref="pom"/>
  </target>
</project>