Dockerfile

FROM obolibrary/odkfull

# install some more packages from apt
RUN apt-get install -y aha

# install Rust
WORKDIR /tools
RUN curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs > rust.sh
RUN sh rust.sh -y
ENV PATH="/root/.cargo/bin:$PATH"

# install wiring.py using wiring.rs bindings
WORKDIR /tools
RUN git clone https://github.com/ontodev/wiring.py.git
WORKDIR /tools/wiring.py
RUN git clone https://github.com/ontodev/wiring.rs.git
RUN mv python_module.rs wiring.rs/src/
RUN rm wiring.rs/Cargo.toml
RUN mv Cargo.toml wiring.rs/
RUN echo "mod python_module;" >> wiring.rs/src/lib.rs
RUN pip install -U pip maturin
RUN maturin build --release --out dist -m wiring.rs/Cargo.toml
RUN pip install dist/wiring_rs-0.1.1-cp36-abi3-manylinux_2_28_x86_64.whl

# install nanobot
WORKDIR /tools
RUN git clone https://github.com/ontodev/nanobot.git
WORKDIR /tools/nanobot
RUN pip install -e .

# install project Python requirements
WORKDIR /tools
COPY requirements.txt /tools/obi-requirements.txt
RUN pip install -r obi-requirements.txt

# restore WORKDIR
WORKDIR /tools