0.3.2

This is a minor bugfix release.

It fixes bugs in edge cases with savemat, cglpk, and cplex.

0.3.1

This is a minor bugfix release.

In addition to minor bugfixes, it brings support for OS 10.10 Yosemite, simplifies installation and adds reaction construction from strings.

0.3.0

This is a major release from 0.2.1, with many new features added. A brief summary is below:

• Revamped faster and simpler solver interface
• New "cglpk" solver to replace "pyglpk" as the default solver (compatible with the latest version of GLPK)
• Support for "exact" solving (#126, 41d91e8)
• Rewritten documentation now available as IPython notebooks
• Major performance improvements to deletions and FVA
• More flux analysis tools (pFBA and phenotypic phase planes, loopless FBA)
• SBML fbc support
• Python 3 support
• Improvements to ArrayBasedModel
• Read-only attributes for gene/reaction/metabolite relationships

0.3.0b4

The following features were added:

• Improvements to solver interface
• Support for exact solving with esolver (Qsopt_ex) (#126)
• Support for Mosek (f79248f)
• Support for "exact" solving with glpk (through cglpk) (41d91e8)
• cglpk is now the preferred binding to glpk (#129)
• Implementation of loopless FBA (#133)
• Update documentation to IPython notebooks (0e38096)

0.3.0b2: Improvements over 0.3.0b1:

Improvements over 0.3.0b1:

• installation improvements
• updates to documentation
• misc bugfixes in
  • qp
  • cglpk solver
  • double deletion multiprocessing

Changes in 0.3.0b1:

Changes in 0.3.0b1:

• faster solver interface
• faster fva and single/double deletions with new interface
• cython-based glpk solver
• more flux analysis tools (pFBA and phenotypic phase planes)
• sbml fbc support
• improvements to ArrayBasedModel
• access read-only attributes for gene/reaction/metabolite relationships
• simplified installation
• python3 support

0.2.1

version 0.2.1

0.2.0

0.2.0 release

0.2.0b1

0.2.1b1

0.1.0

0.1.0