Skip to content

Latest commit

 

History

History
55 lines (37 loc) · 1.63 KB

README.md

File metadata and controls

55 lines (37 loc) · 1.63 KB
Raw

memote – the genome-scale metabolic model test suite

Easily run the memote command line tools from a docker container. You can find the main documentation on readthedocs.

Installation

We aim to release containers for every memote release from version 0.4.5 onwards. You can thus use a specific version tag or simply 'latest'.

docker pull opencobra/memote:latest

Usage

The container exposes the memote command line tool. If you run the container without any arguments you will see the base help message.

docker run opencobra/memote

For now, the best way to have memote interact with files is to mount a local directory into the container. The only hurdle is that you may have to afterwards change the permissions of the output file to your own user.

docker run -v ~/local/path/to/models/directory:/opt opencobra/memote memote run /opt/my-model.xml

We may work on allowing you to pipe the model to the docker container. So in future you would be able to do the following:

my-model.xml > docker run opencobra/memote memote run

Contact

For comments and questions get in touch via

Are you excited about this project? Consider contributing by adding novel tests, reporting or fixing bugs, and generally help us make this a better software for everyone.

Copyright

  • Copyright (c) 2017, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark.
  • Free software: Apache Software License 2.0