From 8e56f457e8bca6adbc44ab683642a90af7cbc4ae Mon Sep 17 00:00:00 2001 From: "Matthew W. Thompson" Date: Thu, 15 Dec 2022 11:17:47 -0600 Subject: [PATCH] Add deployment tests Rename action Add test dependencies Add AmberTools to non-OpenEye builds --- .github/workflows/deployment.yaml | 93 +++++++++++++++++++++ devtools/conda-envs/deployment.yaml | 11 +++ devtools/conda-envs/deployment_openeye.yaml | 12 +++ 3 files changed, 116 insertions(+) create mode 100644 .github/workflows/deployment.yaml create mode 100644 devtools/conda-envs/deployment.yaml create mode 100644 devtools/conda-envs/deployment_openeye.yaml diff --git a/.github/workflows/deployment.yaml b/.github/workflows/deployment.yaml new file mode 100644 index 00000000..3ac15ebe --- /dev/null +++ b/.github/workflows/deployment.yaml @@ -0,0 +1,93 @@ +name: Deployment tests + +on: + push: + branches: + - "main" + pull_request: + branches: + - "main" + release: + types: + - released + - prereleased + schedule: + - cron: "0 0 * * *" + workflow_dispatch: + +defaults: + run: + shell: bash -l {0} + +jobs: + test: + + name: ${{ matrix.os }}, 🐍=${{ matrix.python-version }}, 👁️=${{ matrix.openeye }} + runs-on: ${{ matrix.os }} + + strategy: + fail-fast: false + matrix: + os: [ubuntu-latest, macos-latest] + python-version: ["3.8"] + openeye: ["true", "false"] + + env: + OE_LICENSE: ${{ github.workspace }}/oe_license.txt + + steps: + - uses: actions/checkout@v3 + + - name: Install latest release from conda with OpenEye Toolkits + if: ${{ matrix.openeye == 'false' }} + uses: mamba-org/provision-with-micromamba@main + with: + environment-file: devtools/conda-envs/deployment.yaml + extra-specs: | + python=${{ matrix.python-version }} + + - name: Install latest release from conda without OpenEye Toolkits + if: ${{ matrix.openeye == 'true' }} + uses: mamba-org/provision-with-micromamba@main + with: + environment-file: devtools/conda-envs/deployment_openeye.yaml + extra-specs: | + python=${{ matrix.python-version }} + + - name: License OpenEye Toolkits + if: ${{ matrix.openeye == true }} + env: + OE_LICENSE_TEXT: ${{ secrets.OE_LICENSE }} + run: | + echo "${OE_LICENSE_TEXT}" > ${OE_LICENSE} + python -c "from openeye import oechem; assert oechem.OEChemIsLicensed()" + + - name: Conda environment Information + run: | + conda info + conda list + + - name: Verify that the latest version was installed + run: | + # Move so that we don't just look at tags in the checked-out repo + cd /tmp/ + + export LATEST_TAG=$(git ls-remote --tags https://github.com/openforcefield/openff-bespokefit.git | cut -f2 | grep -E "([0-9]+)\.([0-9]+)\.([0-9]+)$" | sort --version-sort | tail -1 | sed 's/refs\/tags\///') + export FOUND_VER=$(python -c "import openff.bespokefit; print(openff.bespokefit.__version__)") + + echo "Latest tag is" + echo $LATEST_TAG + echo "Found version is" + echo $FOUND_VER + + if [[ $LATEST_TAG != $FOUND_VER ]]; + then echo "Version mismatch" + exit 1 + fi + + cd - + + - name: Run tests + run: | + pytest -v openff/bespokefit/tests + diff --git a/devtools/conda-envs/deployment.yaml b/devtools/conda-envs/deployment.yaml new file mode 100644 index 00000000..db6b9b3c --- /dev/null +++ b/devtools/conda-envs/deployment.yaml @@ -0,0 +1,11 @@ +name: latest-deployment +channels: + - conda-forge +dependencies: + - openff-bespokefit + - ambertools + - pytest + - pytest-cov + - pytest-asyncio + - pytest-celery + - requests-mock diff --git a/devtools/conda-envs/deployment_openeye.yaml b/devtools/conda-envs/deployment_openeye.yaml new file mode 100644 index 00000000..d2d529ba --- /dev/null +++ b/devtools/conda-envs/deployment_openeye.yaml @@ -0,0 +1,12 @@ +name: latest-deployment +channels: + - conda-forge + - openeye +dependencies: + - openff-bespokefit + - openeye-toolkits + - pytest + - pytest-cov + - pytest-asyncio + - pytest-celery + - requests-mock