diff --git a/apps/platform/src/pages/CredibleSetPage/ProfileHeader.gql b/apps/platform/src/pages/CredibleSetPage/ProfileHeader.gql
index c5af1b08f..9feb13bfc 100644
--- a/apps/platform/src/pages/CredibleSetPage/ProfileHeader.gql
+++ b/apps/platform/src/pages/CredibleSetPage/ProfileHeader.gql
@@ -15,6 +15,9 @@ fragment CredibleSetProfileHeaderFragment on credibleSet {
standardError
}
}
+ locusSize: locus(page: { size: 1, index: 0 }) {
+ count
+ }
variant {
chromosome
position
diff --git a/apps/platform/src/pages/CredibleSetPage/ProfileHeader.tsx b/apps/platform/src/pages/CredibleSetPage/ProfileHeader.tsx
index ec5f2e263..94292533c 100644
--- a/apps/platform/src/pages/CredibleSetPage/ProfileHeader.tsx
+++ b/apps/platform/src/pages/CredibleSetPage/ProfileHeader.tsx
@@ -25,14 +25,15 @@ function ProfileHeader() {
if (error) return null;
const credibleSet = data?.credibleSet;
+ const leadVariant = credibleSet?.locus?.rows?.[0] || {};
+ const beta = leadVariant.beta ?? credibleSet?.beta;
+ const standardError = leadVariant.standardError ?? credibleSet?.standardError;
const study = credibleSet?.study;
const target = study?.target;
- const leadVariant = credibleSet?.locus.rows[0];
- const beta = leadVariant?.beta ?? credibleSet?.beta;
- const standardError = leadVariant?.standardError ?? credibleSet?.standardError;
+
const { pValueMantissa, pValueExponent } =
typeof leadVariant?.pValueMantissa === "number" &&
- typeof leadVariant?.pValueExponent === "number"
+ typeof leadVariant?.pValueExponent === "number"
? leadVariant
: credibleSet ?? {};
@@ -169,24 +170,26 @@ function ProfileHeader() {
>
{credibleSet?.purityMinR2?.toPrecision(3)}
- {credibleSet?.qualityControls?.length > 0 &&
+ {credibleSet?.qualityControls?.length > 0 && (
-
+
{credibleSet.qualityControls.map(warning => (
- {warning}
))}
- }
-
+ )}
+
@@ -260,16 +263,17 @@ function ProfileHeader() {
{study?.analysisFlags?.join(", ")}
- {!study?.hasSumstats
- ? "Not Available"
- : study?.sumstatQCValues
- ?
-
-
- : "Available"
- }
+ {!study?.hasSumstats ? (
+ "Not Available"
+ ) : study?.sumstatQCValues ? (
+
+
+
+ ) : (
+ "Available"
+ )}
- {study?.nSamples &&
+ {study?.nSamples && (
- }
- {study?.ldPopulationStructure?.length > 0 &&
+ )}
+ {study?.ldPopulationStructure?.length > 0 && (
{study.ldPopulationStructure.map(({ ldPopulation, relativeSampleSize }) => (
))}
- }
+ )}
-
+
);
}
diff --git a/packages/sections/src/credibleSet/Variants/VariantsSummaryFragment.gql b/packages/sections/src/credibleSet/Variants/VariantsSummaryFragment.gql
index 45060f92b..118c50555 100644
--- a/packages/sections/src/credibleSet/Variants/VariantsSummaryFragment.gql
+++ b/packages/sections/src/credibleSet/Variants/VariantsSummaryFragment.gql
@@ -2,4 +2,7 @@ fragment VariantsSummaryFragment on credibleSet {
locus(variantIds: $variantIds) {
count
}
+ locusSize: locus(page: { size: 1, index: 0 }) {
+ count
+ }
}
diff --git a/packages/sections/src/credibleSet/Variants/index.ts b/packages/sections/src/credibleSet/Variants/index.ts
index 3b9dab34d..4907a1674 100644
--- a/packages/sections/src/credibleSet/Variants/index.ts
+++ b/packages/sections/src/credibleSet/Variants/index.ts
@@ -3,5 +3,5 @@ export const definition = {
id,
name: "Credible Set Variants",
shortName: "VA",
- hasData: data => data?.locus.count > 0,
+ hasData: data => data?.locus.count > 0 || data?.locusSize.count > 0,
};