[Platform]: l2GPredictionsschema change (#590)

opentargets · Dec 5, 2024 · f4d01d5 · f4d01d5
1 parent e291bbb
commit f4d01d5
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Showing 2 changed files with 21 additions and 19 deletions.
diff --git a/packages/sections/src/variant/GWASCredibleSets/Body.tsx b/packages/sections/src/variant/GWASCredibleSets/Body.tsx
@@ -32,9 +32,7 @@ function getColumns({ id, referenceAllele, alternateAllele }: getColumnsType) {
     {
       id: "studyLocusId",
       label: "Navigate",
-      renderCell: ({ studyLocusId }) => (
-        <Navigate to={`/credible-set/${studyLocusId}`} />
-      ),
+      renderCell: ({ studyLocusId }) => <Navigate to={`/credible-set/${studyLocusId}`} />,
     },
     {
       id: "leadVariant",
@@ -182,26 +180,28 @@ function getColumns({ id, referenceAllele, alternateAllele }: getColumnsType) {
     {
       id: "topL2G",
       label: "Top L2G",
-      filterValue: ({ l2Gpredictions }) => l2Gpredictions?.target.approvedSymbol,
+      filterValue: ({ l2GPredictions }) => l2GPredictions?.rows[0]?.target?.approvedSymbol,
       tooltip: "Top gene prioritised by our locus-to-gene model",
-      renderCell: ({ l2Gpredictions }) => {
-        if (!l2Gpredictions[0]?.target) return naLabel;
-        const { target } = l2Gpredictions[0];
+      renderCell: ({ l2GPredictions }) => {
+        if (!l2GPredictions?.rows[0]?.target) return naLabel;
+        const { target } = l2GPredictions?.rows[0];
         return <Link to={`/target/${target.id}`}>{target.approvedSymbol}</Link>;
       },
-      exportValue: ({ l2Gpredictions }) => l2Gpredictions?.target.approvedSymbol,
+      exportValue: ({ l2GPredictions }) => l2GPredictions?.target.approvedSymbol,
     },
     {
       id: "l2gScore",
       label: "L2G score",
-      comparator: (rowA, rowB) => rowA?.l2Gpredictions[0]?.score - rowB?.l2Gpredictions[0]?.score,
+      comparator: (rowA, rowB) =>
+        rowA?.l2GPredictions?.rows[0]?.score - rowB?.l2GPredictions?.rows[0]?.score,
       sortable: true,
-      tooltip: "Machine learning prediction linking a gene to a credible set using all features. Score range [0,1].",
-      renderCell: ({ l2Gpredictions }) => {
-        if (!l2Gpredictions[0]?.score) return naLabel;
+      tooltip:
+        "Machine learning prediction linking a gene to a credible set using all features. Score range [0,1].",
+      renderCell: ({ l2GPredictions }) => {
+        if (!l2GPredictions?.rows[0]?.score) return naLabel;
         return (
-          <Tooltip title={l2Gpredictions[0].score.toFixed(3)} style="">
-            <OtScoreLinearBar variant="determinate" value={l2Gpredictions[0].score * 100} />
+          <Tooltip title={l2GPredictions?.rows[0].score.toFixed(3)} style="">
+            <OtScoreLinearBar variant="determinate" value={l2GPredictions?.rows[0].score * 100} />
           </Tooltip>
         );
       },

diff --git a/packages/sections/src/variant/GWASCredibleSets/GWASCredibleSetsQuery.gql b/packages/sections/src/variant/GWASCredibleSets/GWASCredibleSetsQuery.gql
@@ -37,12 +37,14 @@ query GWASCredibleSetsQuery($variantId: String!, $size: Int!, $index: Int!) {
             posteriorProbability
           }
         }
-        l2Gpredictions(size: 1) {
-          target {
-            id
-            approvedSymbol
+        l2GPredictions(page: { size: 1, index: 1 }) {
+          rows {
+            target {
+              id
+              approvedSymbol
+            }
+            score
           }
-          score
         }
       }
     }