{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"Regenie_nextflow","owner":"CERC-Genomic-Medicine","isFork":false,"description":"Pipeline implementation of Regenie","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-06T16:50:07.428Z"}},{"type":"Public","name":"glimpse_pipeline","owner":"CERC-Genomic-Medicine","isFork":false,"description":"Pipeline for variant imputation in low depth sequencing data using GLIMPSE","allTopics":["pipeline","genetics","sequencing","glimpse","wgs-data","genotype-imputation"],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":1,"starsCount":3,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-28T14:33:05.020Z"}},{"type":"Public","name":"scripts","owner":"CERC-Genomic-Medicine","isFork":false,"description":"Various scripts","allTopics":["genetics"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-20T20:52:20.527Z"}},{"type":"Public","name":"WEGS_pipelines","owner":"CERC-Genomic-Medicine","isFork":false,"description":"Pipelines for SNVs and InDels calling (single sample and joint) in WEGS, WGS, and WES using GATK.","allTopics":["snps","genetics","sequencing","gatk","wgs","wes","indels","snvs","wegs"],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-16T18:36:48.774Z"}},{"type":"Public","name":"verifybam_pipeline","owner":"CERC-Genomic-Medicine","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-08T18:47:24.574Z"}},{"type":"Public","name":"vep_pipeline","owner":"CERC-Genomic-Medicine","isFork":false,"description":"Pipeline for variant annotation using Variant Effect Predictor (VEP)","allTopics":["gwas","pipeline","nextflow","genetics","annotations","variant","vep","variant-annotation","variant-effect-prediction","vep-annotation"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-26T15:59:31.688Z"}},{"type":"Public","name":"CARTaGENE_flagship_paper","owner":"CERC-Genomic-Medicine","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-13T13:27:26.105Z"}},{"type":"Public","name":"SV_calling_pipeline","owner":"CERC-Genomic-Medicine","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-17T22:19:16.326Z"}},{"type":"Public","name":"Phenotype_Filtering_Tool","owner":"CERC-Genomic-Medicine","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-14T20:41:29.665Z"}},{"type":"Public","name":"CARTaGENE_PheWeb","owner":"CERC-Genomic-Medicine","isFork":true,"description":"A tool to build a website to browse hundreds or thousands of GWAS.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":65,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-02T14:10:34.454Z"}},{"type":"Public","name":"HGDP_1KG_ancestry_inference","owner":"CERC-Genomic-Medicine","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-27T15:42:48.971Z"}},{"type":"Public","name":"bravo_data_prep","owner":"CERC-Genomic-Medicine","isFork":true,"description":"Work flows and tools to create data that backs the BRAVO API.","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-12T16:26:32.864Z"}},{"type":"Public","name":"BQC19_Imputation_Panel","owner":"CERC-Genomic-Medicine","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-07T16:15:32.752Z"}},{"type":"Public","name":"bravo_api","owner":"CERC-Genomic-Medicine","isFork":true,"description":"Server side data processing and retrieval endpoints for BRAVO","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-24T20:25:20.593Z"}},{"type":"Public","name":"AccessibilityMask","owner":"CERC-Genomic-Medicine","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-26T15:44:36.789Z"}},{"type":"Public","name":"ProgrammingClub","owner":"CERC-Genomic-Medicine","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-20T20:45:21.010Z"}},{"type":"Public","name":"CARTaGENE_Imputation_Panel","owner":"CERC-Genomic-Medicine","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-17T15:20:49.095Z"}},{"type":"Public","name":"WEGS_paper","owner":"CERC-Genomic-Medicine","isFork":false,"description":"This repository contains source code for the tables and figures presented in the WEGS paper.","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-05T16:49:03.599Z"}},{"type":"Public","name":"shapeit4_pipeline","owner":"CERC-Genomic-Medicine","isFork":false,"description":"Pipeline for genotype phasing using SHAPEIT4","allTopics":["pipeline","genetics","phasing","genotype-phasing"],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-24T18:00:48.596Z"}},{"type":"Public","name":"beagle_phasing","owner":"CERC-Genomic-Medicine","isFork":false,"description":"Nextflow pipeline around Beagle phasing/imputation tool","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-06T19:27:35.648Z"}},{"type":"Public","name":"RFMix2_local_ancesty","owner":"CERC-Genomic-Medicine","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-06T19:21:57.024Z"}},{"type":"Public","name":"skills_test_3","owner":"CERC-Genomic-Medicine","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-08-27T13:35:11.878Z"}},{"type":"Public","name":"skills_test_2","owner":"CERC-Genomic-Medicine","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-08-20T12:42:55.502Z"}},{"type":"Public","name":"ExomePLUS_benchmark","owner":"CERC-Genomic-Medicine","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-12-22T19:57:04.036Z"}},{"type":"Public","name":"skills_test_1","owner":"CERC-Genomic-Medicine","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-11-12T00:40:28.477Z"}}],"repositoryCount":25,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"CERC-Genomic-Medicine repositories"}