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@Efficiency-of-RELAX Efficiency-of-RELAX

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    18 repositories

    • RELAX-on-CYP8B1

      Public
      Analyze how gaps affect the detection of relaxed selection by 'RELAX' in terms of number of gaps, length of gaps and number of species.
      tree-modelgapsrelaxed-selectiontree-building
      Perl
      •6•2•0•0•Updated Jan 15, 2021Jan 15, 2021

    • LightGBM

      Public
      A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks.
      C++
      •
      MIT License
      •3.8k•0•0•0•Updated Oct 9, 2019Oct 9, 2019

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •69•0•0•0•Updated Oct 4, 2019Oct 4, 2019

    • seqkit

      Public
      A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
      Go
      •
      MIT License
      •159•0•0•0•Updated Sep 24, 2019Sep 24, 2019

    • raxml-ng

      Public
      RAxML Next Generation: faster, easier-to-use and more flexible
      C++
      •
      GNU Affero General Public License v3.0
      •63•0•0•0•Updated Sep 17, 2019Sep 17, 2019

    • hyphy

      Public
      HyPhy: Hypothesis testing using Phylogenies
      HyPhy
      •
      Other
      •69•0•0•0•Updated Sep 4, 2019Sep 4, 2019

    • bioperl-live

      Public
      Core BioPerl 1.x code
      Perl
      •182•0•0•0•Updated Aug 29, 2019Aug 29, 2019

    • GC_content_in_sliding_window

      Public
      Calculate GC% and GC deviation for circular genomes
      Perl
      •10•0•0•0•Updated Aug 19, 2019Aug 19, 2019

    • phylotree.js

      Public
      Interactive viewer of phylogenetic trees
      JavaScript
      •
      MIT License
      •78•0•0•0•Updated Jul 16, 2019Jul 16, 2019

    • GenomeAlignmentTools

      Public
      Tools for improving the sensitivity and specificity of genome alignments
      C
      •
      MIT License
      •15•0•0•0•Updated Jul 8, 2019Jul 8, 2019

    • hyphy-gui

      Public
      Desktop application for HyPhy
      HyPhy
      •
      MIT License
      •10•0•0•0•Updated Jul 5, 2019Jul 5, 2019

    • modeltest

      Public
      Best-fit model selection
      C++
      •
      GNU General Public License v3.0
      •21•0•0•0•Updated Jun 14, 2019Jun 14, 2019

    • CESAR2.0

      Public
      C
      •
      MIT License
      •10•0•0•0•Updated Apr 12, 2019Apr 12, 2019

    • newick_utils

      Public
      shell tools for processing phylogenetic trees
      C
      •
      Other
      •31•0•0•0•Updated Jul 18, 2018Jul 18, 2018

    • standard-RAxML

      Public
      C
      •193•0•0•0•Updated May 29, 2018May 29, 2018

    • xmr-stak-amd

      Public
      Monero AMD miner
      C++
      •
      GNU General Public License v3.0
      •106•0•0•0•Updated Dec 17, 2017Dec 17, 2017

    • ForwardGenomics

      Public
      Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
      R
      •
      MIT License
      •8•0•0•0•Updated Jun 10, 2017Jun 10, 2017

    • bioawk-tutorial

      Public
      10•0•0•0•Updated May 13, 2013May 13, 2013