Repositories list

• smurff

  Public
  Bayesian Factorization with Side Information in C++ with Python wrapper

  pythonmatrix-factorizationbayesian-inference+ 4gibbs-samplinglatent-featureslatent-fact-modelprobabilistic-matrix-factorization

  C++

  •

  MIT License

  •31•70•2•0•Updated Nov 20, 2024Nov 20, 2024

• bpmf

  Public
  Julia and C++ implementations of Bayesian Probabilistic Matrix Factorization using Markov Chain Monte Carlo

  C++

  •

  MIT License

  •13•57•0•0•Updated Jan 19, 2024Jan 19, 2024

• ptra

  Public
  Patient Trajectory Analysis Library

  Go

  •

  Other

  •2•6•0•0•Updated Nov 29, 2023Nov 29, 2023

• elprep

  Public
  elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.

  Go

  •

  Other

  •40•287•20•1•Updated Jun 2, 2023Jun 2, 2023

• vms

  Public
  Virtual Molecule Screening benchmark

  C

  •

  MIT License

  •1•1•0•0•Updated Mar 20, 2023Mar 20, 2023

• elprep-bench

  Public
  elPrep reimplementations in C++ and Java, only for benchmark comparisons

  C++

  •

  Other

  •3•10•2•0•Updated Feb 13, 2023Feb 13, 2023

• VoC-Interview

  Public
  0•0•0•0•Updated Sep 20, 2022Sep 20, 2022

• Aki-Predictor

  Public
  Python

  •

  GNU Affero General Public License v3.0

  •6•9•2•0•Updated Sep 20, 2022Sep 20, 2022

• ICU72hReadmissionMIMICIII

  Public
  Prediction of ICU Readmissions Using Data at Patient Discharge using MIMICIII Database

  Python

  •

  MIT License

  •6•0•0•0•Updated Sep 20, 2022Sep 20, 2022

• Severo.jl

  Public
  a software package for analysis and exploration of single-cell RNA-seq datasets

  Julia

  •

  Other

  •2•3•0•0•Updated Feb 2, 2022Feb 2, 2022

• Severo-experiments

  Public
  Experiments for the Severo.jl package

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 2, 2021Dec 2, 2021

• Severo_jll.jl

  Public
  Julia

  •

  Other

  •0•1•0•0•Updated Sep 24, 2021Sep 24, 2021

• pargo

  Public
  A library for parallel programming in Go

  Go

  •

  BSD 3-Clause "New" or "Revised" License

  •7•187•0•0•Updated Jun 12, 2020Jun 12, 2020

• cl-elprep

  Public
  elPrep: a high-performance tool for preparing sequencing alignment/map files in sequencing pipelines (Lisp version)

  Common Lisp

  •

  Other

  •2•14•0•0•Updated Feb 22, 2019Feb 22, 2019

• correct-platinum-fastq-sequence-identifier

  Public
  Script for correcting sequence identifiers in Platinum whole genome sequences

  Go

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 11, 2019Jan 11, 2019

• process-plate

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•2•4•0•Updated Oct 11, 2018Oct 11, 2018

• cl-elprep-mongo

  Public
  elPrep-mongo is an extension of elPrep that allows for using MongoDB databases as input and/or output targets in elPrep.

  Common Lisp

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Sep 27, 2017Sep 27, 2017

• shark

  Public
  Scalable Hybrid Array Kit (Shark)

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •0•9•0•0•Updated Nov 10, 2016Nov 10, 2016

• cl-date-time-parser

  Public
  Parse date-time-string, liberally.

  Common Lisp

  •

  MIT License

  •4•0•0•0•Updated Oct 9, 2014Oct 9, 2014

• cl-mongo-stream

  Public
  A stream-oriented implemented of the MongoDB wire protocol for Common Lisp.

  Common Lisp

  •

  BSD 3-Clause "New" or "Revised" License

  •0•4•0•0•Updated Sep 5, 2014Sep 5, 2014

• bwa

  Public
  Burrow-Wheeler Aligner

  C

  •

  GNU General Public License v3.0

  •555•2•0•0•Updated Mar 12, 2014Mar 12, 2014

• beam-road

  Public
  0•0•0•0•Updated Feb 28, 2014Feb 28, 2014

• arrow-street

  Public
  C++11 containers with "structures of arrays" or "arrays of structures" memory layout.

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •3•11•0•0•Updated Oct 8, 2013Oct 8, 2013