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@IBPA Integrative Biology and Predictive Analytics Group

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    31 repositories

    • DepressionProject

      Public
      Depression Project Code
      Python
      •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • A2H

      Public
      Preclinical trial experimental design recommendation system.
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • FoodAtlas

      Public
      Python
      •
      Apache License 2.0
      •1•2•4•0•Updated Sep 3, 2024Sep 3, 2024

    • GlioblastomaAI

      Public
      Classifying glioblastoma patients undergoing treatments using biogenic amines in serums.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 2, 2024Sep 2, 2024

    • MOMA

      Public
      Multi-Omics Modeling and Analytics
      machine-learningbioinformatics
      Python
      •
      Apache License 2.0
      •1•2•0•2•Updated Aug 2, 2024Aug 2, 2024

    • CowMetritis

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Jun 17, 2024Jun 17, 2024

    • smoke_taint_prediction

      Public
      Repository of smoke taint project
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • AminoCompositionEstimator

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 5, 2024Feb 5, 2024

    • SemiAutomatedFoodKBC

      Public
      Source code for "Semi-Automated Construction of Food Composition Knowledge Base." (Accepted by the 2nd AAAI AIAFS Workshop: https://arxiv.org/abs/2301.11322)
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 16, 2023Nov 16, 2023

    • LOVE

      Public
      Learning Ontologies Via Embeddings
      foodmachine-learningword2vecontologyartificial-intelligenceword-embedding
      Python
      •
      Apache License 2.0
      •2•12•1•2•Updated Jul 6, 2023Jul 6, 2023

    • KGLM

      Public
      Python
      •
      Apache License 2.0
      •2•19•1•0•Updated Nov 11, 2022Nov 11, 2022

    • KIDS

      Public
      Knowledge Integration and Decision Support
      Python
      •
      Apache License 2.0
      •6•6•1•0•Updated Jul 12, 2022Jul 12, 2022

    • IBPA-Collection-of-Reproducible-Code-and-Results

      Public
      Python
      •
      Apache License 2.0
      •3•5•0•0•Updated Apr 29, 2022Apr 29, 2022

    • OCB

      Public
      Omics Compendium Builder
      Roff
      •
      Apache License 2.0
      •0•0•1•0•Updated Aug 14, 2021Aug 14, 2021

    • OMMs

      Public
      Meal Design for Heterogeneous Glycan Content
      R
      •
      MIT License
      •0•0•0•1•Updated Jul 12, 2021Jul 12, 2021

    • transformers

      Public
      🤗Transformers: State-of-the-art Natural Language Processing for Pytorch, TensorFlow, and JAX.
      Python
      •
      Apache License 2.0
      •27k•0•0•0•Updated Jul 6, 2021Jul 6, 2021

    • AntibioticResistance

      Public
      1•0•0•0•Updated Mar 27, 2021Mar 27, 2021

    • FODMAPsAndGutMicrobiome

      Public
      A meta-analysis studying the interplay of dietary FODMAPs, gut microbiome and health in irritable bowel syndrome (IBS).
      R
      •
      Creative Commons Zero v1.0 Universal
      •1•1•0•0•Updated Jan 4, 2021Jan 4, 2021

    • PAMDB

      Public
      A Parts Database with Consensus Parameter Estimation for Synthetic Circuit Design
      MATLAB
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

    • SBROME

      Public
      Synthetic Biology Reusable Optimization Methodology
      C
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

    • ClusterMissForest

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

    • Cascade

      Public
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

    • MutationDB

      Public
      Repository for the MutationDB paper
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 12, 2020Oct 12, 2020

    • dairyML

      Public
      Predict lactose content of various foods based on other nutritional information provided by ASA24 food recalls
      Jupyter Notebook
      •
      Apache License 2.0
      •3•1•0•0•Updated Oct 12, 2020Oct 12, 2020

    • dairy_matching

      Public
      Match entries across food databases
      Jupyter Notebook
      •
      Apache License 2.0
      •2•0•0•0•Updated Oct 12, 2020Oct 12, 2020

    • TIP-cli

      Public
      Toxicology Integrated Platform
      Python
      •
      Apache License 2.0
      •0•3•0•0•Updated Oct 12, 2020Oct 12, 2020

    • OPEX

      Public
      An optimal experimental design framework for accelerating knowledge discovery using gene expression data
      rna-seqgene-expressiongaussian-processesescherichia-coliantibiotic-resistanceoptimal-experimental-designculture-conditions
      R
      •
      Apache License 2.0
      •1•0•2•1•Updated Aug 27, 2020Aug 27, 2020

    • ChemostatModel

      Public
      Predict and understand the growth dynamics of E. coli in long-term chemostat.
      MATLAB
      •
      Apache License 2.0
      •1•0•0•0•Updated Aug 4, 2020Aug 4, 2020

    • DeepPep

      Public
      Deep proteome inference from peptide profiles
      deep-learningproteomics
      Lua
      •
      Apache License 2.0
      •6•13•1•0•Updated Jul 16, 2020Jul 16, 2020

    • GNN

      Public
      Gene Neural Network (GNN)
      Shell
      •
      Apache License 2.0
      •3•12•1•1•Updated Oct 5, 2019Oct 5, 2019