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    38 repositories

    • privileged_residues

      Public
      Python
      •
      Other
      •4•1•0•19•Updated Nov 16, 2024Nov 16, 2024

    • rosetta

      Public
      The Rosetta Bio-macromolecule modeling package.
      protein-structureprotein-designenzyme-designmacromolecular-modelingantibody-design
      C++
      •
      Other
      •66•169•9•14•Updated Nov 12, 2024Nov 12, 2024

    • pybind11

      Public
      Seamless operability between C++11 and Python
      C++
      •
      Other
      •2.1k•8•0•4•Updated Nov 11, 2024Nov 11, 2024

    • binder

      Public
      Binder, tool for automatic generation of Python bindings
      bindingspython
      C++
      •
      MIT License
      •66•321•29•3•Updated Nov 6, 2024Nov 6, 2024

    • documentation

      Public
      Documentation for Rosetta Applications
      PostScript
      •
      Other
      •2•4•3•15•Updated Nov 4, 2024Nov 4, 2024

    • protein_generator

      Public
      Joint sequence and structure generation with RoseTTAFold sequence space diffusion
      Python
      •
      MIT License
      •43•263•10•0•Updated Oct 28, 2024Oct 28, 2024

    • demos

      Public
      Demos of many Rosetta applications
      Roff
      •
      Other
      •3•9•1•2•Updated Oct 2, 2024Oct 2, 2024

    • RFdiffusion

      Public
      Code for running RFdiffusion
      Python
      •
      Other
      •345•1.8k•135•11•Updated Aug 26, 2024Aug 26, 2024

    • PyRosetta.notebooks

      Public
      Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
      jupyter-notebookdnarosettarna-structure-predictionprotein-designprotein-foldingprotein-structure-predictionprotein-dockinggoogle-colabpyrosetta
      Jupyter Notebook
      •
      MIT License
      •151•491•20•6•Updated Aug 12, 2024Aug 12, 2024

    • rdkit

      Public
      The official sources for the RDKit library
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •880•3•0•1•Updated May 24, 2024May 24, 2024

    • tools

      Public
      Tools for parsing Rosetta source code and scripts for running specific Rosetta applications.
      Python
      •
      Other
      •1•3•6•6•Updated May 1, 2024May 1, 2024

    • rosetta_clone_tools

      Public
      A public repository with scripts and tools for cloning and setting up RosettaCommons repositories.
      Shell
      •26•24•0•1•Updated Mar 8, 2024Mar 8, 2024

    • pyrosetta_scripts

      Public
      A place in which scripts developed in PyRosetta can be stored and shared. In the not too distant future, these scripts will be tested along side the main repository to ensure that they continue to work even if we make changes to the interfaces of core classes.
      Scala
      •
      Other
      •1•4•0•2•Updated Mar 7, 2024Mar 7, 2024

    • rosetta_scripts_scripts

      Public
      This is the repository where all developers writing protocols in XML should place all of their scripts
      Roff
      •
      Other
      •0•4•1•1•Updated Mar 7, 2024Mar 7, 2024

    • scientific_benchmark_data

      Public
      various input data for scientific benchmark tests
      Roff
      •
      Other
      •0•1•0•0•Updated Mar 7, 2024Mar 7, 2024

    • additional_protocol_data

      Public
      A repository for holding canonical inputs for Rosetta used by some (but not all) protocols; this is for data too big to go in main/database and that is not tightly coupled to the code in main/.
      Roff
      •
      Other
      •1•0•0•0•Updated Mar 7, 2024Mar 7, 2024

    • pyrosetta_colab_setup

      Public
      Files for our auxiliary pyrosetta_colab_setup PyPI package
      Python
      •
      MIT License
      •2•3•0•1•Updated Mar 7, 2024Mar 7, 2024

    • RoseTTAFold

      Public
      This package contains deep learning models and related scripts for RoseTTAFold
      Python
      •
      MIT License
      •440•2k•84•7•Updated Feb 15, 2024Feb 15, 2024

    • bcl_rosetta

      Public
      A version of the Biochemical Library (BCL; https://github.com/BCLCommons/bcl) for integration with Rosetta.
      C++
      •
      MIT License
      •19•2•0•0•Updated Feb 11, 2024Feb 11, 2024

    • AF2_peptide_hallucination

      Public
      Code for designing binders to flexible peptides with AlphaFold2 Hallucination
      Python
      •
      Other
      •0•14•0•0•Updated Dec 21, 2023Dec 21, 2023

    • tensorflow_graphs

      Public
      trRosetta model binaries for using the trRosetta protocol within Rosetta proper
      PureBasic
      •
      MIT License
      •3•2•0•1•Updated Jun 22, 2023Jun 22, 2023

    • bakerlab_dotfiles

      Public
      Configuration files the way we like 'em
      Python
      •
      Apache License 2.0
      •6•3•0•0•Updated May 17, 2023May 17, 2023

    • RFDesign

      Public
      Protein hallucination and inpainting with RoseTTAFold
      Python
      •
      Other
      •66•245•33•1•Updated Mar 30, 2023Mar 30, 2023

    • FvHallucinator

      Public
      Python
      •
      Other
      •5•25•1•0•Updated Dec 6, 2022Dec 6, 2022

    • DeepAb

      Public
      Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
      Python
      •
      Other
      •28•147•8•2•Updated Nov 30, 2022Nov 30, 2022

    • pyrosetta_viewer3d

      Public
      Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab
      Python
      •
      MIT License
      •3•8•5•0•Updated Oct 16, 2022Oct 16, 2022

    • Rosetta-DL

      Public
      A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
      Other
      •6•32•1•0•Updated Oct 12, 2022Oct 12, 2022

    • alphafold

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •2.3k•2•0•0•Updated Aug 3, 2022Aug 3, 2022

    • AutoRotLib

      Public
      Python
      •3•0•0•0•Updated May 26, 2022May 26, 2022

    • jade2

      Public
      General repository for python modules and scripts to aid in the design, analysis, and modeling of biomolecules.
      Python
      •
      Other
      •3•3•0•0•Updated Oct 21, 2021Oct 21, 2021