Repositories list

• NanoFungiBarcode

  Public
  0•0•0•0•Updated Jul 2, 2024Jul 2, 2024

• DNA_entropy_scripts

  Public
  Python scripts for calculating and filtering DNA entropy

  Python

  •0•0•0•0•Updated May 27, 2024May 27, 2024

• AAToL

  Public
  Scripts and pipelines for Australian Angiosperm Tree of Life Paper

  0•0•0•0•Updated Jan 10, 2024Jan 10, 2024

• VicMicrobiome

  Public
  Soil meta-barcoding across the state of Victoria, Australia

  HTML

  •

  GNU General Public License v3.0

  •1•2•2•0•Updated Jun 29, 2023Jun 29, 2023

• GAP_hybpiper_helpers

  Public
  Helper / wrapper scripts for running Hybpiper2 on NCI Gadi.

  Python

  •1•0•0•0•Updated Feb 26, 2023Feb 26, 2023

• gap-download

  Public
  Downloads files from the GAP data portal https://data.bioplatforms.com/organization/about/bpa-plants

  Python

  •0•0•0•0•Updated Feb 2, 2023Feb 2, 2023

• HybPiper-RBGV

  Public
  Nextflow/Singularity pipeline for running modified scripts from HybPiper (https://github.com/mossmatters/HybPiper)

  Nextflow

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Sep 6, 2022Sep 6, 2022

• genomes_update

  Public
  Search NCBI for latest genome and sequence data for a specified taxon

  Python

  •1•0•0•0•Updated Jun 2, 2022Jun 2, 2022

• taxonkit

  Public
  A Practical and Efficient NCBI Taxonomy Toolkit

  Go

  •

  MIT License

  •30•0•0•0•Updated May 31, 2022May 31, 2022

• species2taxid.py

  Public
  Fetches the NCBI TaxID and full taxonomy from list of species names.

  Python

  •0•0•0•0•Updated May 20, 2022May 20, 2022

• PAFTOL-taxonomy-classifier

  Public
  #Scripts to create Kraken2 database of PAFTOL V2.0 Angio353 genes. An excellent database for taxonomic identification of plants. #https://treeoflife.kew.org/ #https://github.com/DerrickWood/kraken2/wiki #Prior to using this script, download and install kraken2 and make sure it is working and in your PATH. #Make sure the location of the python sc…

  metagenomicsplantphylogenomics+ 3taxonomy-assignmentkraken2genome-skimming

  Python

  •0•1•0•0•Updated Mar 29, 2022Mar 29, 2022

• turbo_scripts

  Public
  Parallelises common commands

  Python

  •0•0•0•0•Updated Feb 3, 2022Feb 3, 2022