Repositories list

• Synapse-Migration-Utility

  Public
  Utility to migrate one Synapse stack to another

  Java

  •

  Apache License 2.0

  •4•0•0•0•Updated Oct 20, 2024Oct 20, 2024

• Synapse-Repository-Services

  Public
  The Synapse Repository Services project is the home of the JSON REST web services for Synapse.

  Java

  •

  Apache License 2.0

  •53•36•0•5•Updated Oct 20, 2024Oct 20, 2024

• Synapse-Stack-Builder

  Public
  Project for building a complete Synapse Stack

  Java

  •

  Apache License 2.0

  •19•5•0•2•Updated Oct 19, 2024Oct 19, 2024

• SynapseWebClient

  Public
  The web client of the Synapse REST service core

  JavaScript

  •

  Apache License 2.0

  •37•23•1•8•Updated Oct 19, 2024Oct 19, 2024

• synapse-web-monorepo

  Public
  Monorepo for Synapse Web projects

  TypeScript

  •23•4•3•36•Updated Oct 19, 2024Oct 19, 2024

• schematic

  Public
  Package for biomedical data model and metadata ingress management

  schemabiomedical-informaticsdata-ingress

  Python

  •

  MIT License

  •25•22•192•10•Updated Oct 19, 2024Oct 19, 2024

• iAtlas-infra

  Public
  Shell

  •

  Apache License 2.0

  •5•2•0•1•Updated Oct 18, 2024Oct 18, 2024

• genie-bpc-pipeline

  Public
  GENIE BPC pipeline scripts

  genie

  R

  •

  MIT License

  •1•2•0•6•Updated Oct 18, 2024Oct 18, 2024

• agora-data-tools

  Public
  A place for Agora's ETL and Data Testing

  Jupyter Notebook

  •

  Apache License 2.0

  •3•1•0•0•Updated Oct 18, 2024Oct 18, 2024

• BridgeServer2

  Public
  Bridge Server 2.0 running on Spring Boot

  Java

  •

  Other

  •22•5•0•1•Updated Oct 18, 2024Oct 18, 2024

• recover

  Public
  A data pipeline for processing data from the RECOVER project.

  Python

  •

  Apache License 2.0

  •1•5•0•0•Updated Oct 18, 2024Oct 18, 2024

• core-models

  Public
  Sage repository for data models and core models work

  Python

  •1•0•3•0•Updated Oct 18, 2024Oct 18, 2024

• scicomp-provisioner

  Public
  An service to auto provision resources

  Jinja

  •

  Apache License 2.0

  •45•1•0•1•Updated Oct 18, 2024Oct 18, 2024

• genie-bpc-drug-off-label

  Public
  Repository for the code relating to off-label and off-guideline use of drugs in the BPC data.

  R

  •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

• data_curator_config

  Public
  Project configurations for the Data Curator App

  18•2•0•1•Updated Oct 18, 2024Oct 18, 2024

• snowflake

  Public
  Snowflake Administration, Transformations, and Analytics

  snowflake

  Python

  •

  Apache License 2.0

  •4•4•0•2•Updated Oct 18, 2024Oct 18, 2024

• sage-monorepo

  Public
  Where OpenChallenges, Schematic, and other Sage open source apps are built

  angularopenapischematic+ 11monorepofull-stackfairdeveloper-experiencenxagoraspecification-first+ 4

  TypeScript

  •

  Apache License 2.0

  •12•23•152•4•Updated Oct 17, 2024Oct 17, 2024

• synapsePythonClient

  Public
  Programmatic interface to Synapse services for Python

  synapsepython

  Python

  •

  Apache License 2.0

  •68•67•3•2•Updated Oct 17, 2024Oct 17, 2024

• modelad

  Public
  Data Wrangling for Model-AD Programs study Alzheimer's Disease (AD) and identify treatments using animal models.

  R

  •

  MIT License

  •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• Sage-Governance-Documents

  Public
  Repository of Governance documents for systems like Synapse

  Apache License 2.0

  •1•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• schematic-infra

  Public
  CDK-based template for deploying a containerized application to AWS

  Python

  •3•0•0•1•Updated Oct 16, 2024Oct 16, 2024

• genie-bpc-bladder-landscape-manu

  Public
  Analyses related to the GENIE BPC Bladder cohort. Intended for a landscape manuscript.

  R

  •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• schematic_db

  Public
  A python package that manages data backends for schematic

  Python

  •1•0•8•0•Updated Oct 12, 2024Oct 12, 2024

• nbconvert-webapp

  Public
  Converts ipynb file into html. Packaged for Lambda deployment

  Python

  •2•0•0•0•Updated Oct 11, 2024Oct 11, 2024

• Agora

  Public
  TypeScript

  •

  MIT License

  •12•7•0•12•Updated Oct 11, 2024Oct 11, 2024

• data-models

  Public template
  MIT License

  •1•0•0•1•Updated Oct 4, 2024Oct 4, 2024

• recover-parquet-external

  Public
  Pipeline for filtering and de-identification of post-ETL parquet files and then indexing from S3 storage into Synapse using STS

  R

  •1•0•0•0•Updated Oct 4, 2024Oct 4, 2024

• recover-pipeline-i2b2

  Public
  Egress pipeline for data enrichment and i2b2 summarization for NIH RECOVER

  R

  •1•0•0•0•Updated Oct 3, 2024Oct 3, 2024

• data_curator-infra

  Public
  CDK-based template for deploying a containerized application to AWS

  Python

  •6•1•0•0•Updated Oct 3, 2024Oct 3, 2024

• data_curator

  Public
  Data and metadata ingress app

  R

  •

  Apache License 2.0

  •21•10•49•1•Updated Oct 3, 2024Oct 3, 2024