Repositories list

• ibed-bioinformatics-page

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 20, 2024Nov 20, 2024

• GINtool

  Public
  Gene Information Network add-in for Excel

  C#

  •0•0•0•0•Updated Sep 21, 2023Sep 21, 2023

• polarVolcaNoseR

  Public
  a polar representation of multiple volcano plots

  datavizshiny-appsvolcano-plot

  R

  •

  Apache License 2.0

  •1•1•0•0•Updated Jun 1, 2023Jun 1, 2023

• rna-seq-lesson

  Public
  A Carpentries-style lesson on RNA-Sequencing

  HTML

  •

  Other

  •16•17•8•1•Updated May 1, 2023May 1, 2023

• GlucoseInsulinModel

  Public
  shiny app to demonstrate the glucose-insuline model.

  R

  •0•1•0•0•Updated Apr 11, 2023Apr 11, 2023

• 2022-12-08-shotgun-metagenomics-workshop

  Public
  Data Carpentry workshop organised at Utrecht University Medical Center on December 8-9, 2022.

  bioinformaticsmicrobiomeshotgun-metagenomics

  HTML

  •

  Other

  •3•1•0•0•Updated Mar 16, 2023Mar 16, 2023

• R-packaging-for-reproducible-science

  Public
  HTML

  •

  Other

  •0•0•0•0•Updated Jan 29, 2023Jan 29, 2023

• NutriKinetics

  Public
  shiny app computer exercise with some practical aspects of nutrikinetics

  R

  •0•0•0•0•Updated Oct 13, 2022Oct 13, 2022

• DataTool

  Public
  shiny app for ASCA

  R

  •0•0•0•0•Updated Oct 6, 2022Oct 6, 2022

• PlotXpress

  Public
  plottingshinyappsdatavisualization+ 1luciferase

  R

  •

  Apache License 2.0

  •1•0•1•0•Updated Jun 28, 2022Jun 28, 2022

• outreach

  Public
  Posters, presentations, flyers made for events and to advertise the community. For instance, Open Science Festival, SILS research day, etc.

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Jun 14, 2022Jun 14, 2022

• 2022-05-20_conventional-machine-learning

  Public
  Workshop on Machine Learning organised at the Data Science Center on 20 May 2022

  GNU General Public License v3.0

  •0•0•0•0•Updated May 17, 2022May 17, 2022

• 2022-04-21-Python-workshop

  Public
  HTML

  •

  Other

  •1•0•0•0•Updated Apr 21, 2022Apr 21, 2022

• nlp_pubmed

  Public archive
  Natural Language Processing based on a query to PubMed

  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 25, 2022Feb 25, 2022

• 2020-03-12-geospatial-data-workshop

  Public
  Website for geospatial data workshop - 12-13 March 2020 - Science Park Study Group

  HTML

  •

  Other

  •0•0•0•0•Updated Feb 14, 2022Feb 14, 2022

• crunchomics

  Public
  SILS/IBED compute cluster Crunchomics documentation

  documentationhpc

  0•0•0•0•Updated Dec 13, 2021Dec 13, 2021

• docker-images-for-teaching

  Public archive
  Docker files for the Green Life Sciences Master course. For the Docker images, please visit the DockerHub link.

  rstudiodocker-imagesdocker-containers

  Dockerfile

  •

  Apache License 2.0

  •1•0•2•0•Updated Nov 16, 2021Nov 16, 2021

• feature_selection_with_sklearn

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 18, 2021Oct 18, 2021

• master-advanced-forensics

  Public
  HTML

  •

  Other

  •0•0•0•0•Updated Oct 12, 2021Oct 12, 2021

• 2021-07-01-RNA-seq-workshop-summer-school

  Public
  shellrna-seqr

  HTML

  •

  Other

  •0•2•0•0•Updated Jul 1, 2021Jul 1, 2021

• GoogleEarthEngine

  Public
  Google Earth Engine Tutorial

  JavaScript

  •

  Other

  •42•0•0•0•Updated Jun 30, 2021Jun 30, 2021

• Intro-Google-Earth-Engine-lesson

  Public
  Introduction to Google Earth Engine

  HTML

  •

  Other

  •0•1•0•0•Updated Jun 29, 2021Jun 29, 2021

• Intro-Python-workshop

  Public
  Introduction to programming in Python, Week 1

  HTML

  •

  Other

  •0•0•0•0•Updated Jun 24, 2021Jun 24, 2021

• 2021-06-21-open-r-workshop-summer-school

  Public
  Open Science with R workshop organised during the 2021 Summer School

  githubdataggplot2+ 5rdplyrversion-controlrstudiotidy

  Python

  •

  Other

  •0•0•0•0•Updated Jun 21, 2021Jun 21, 2021

• 2021_summer_school

  Public
  2021 summer school

  SCSS

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Jun 18, 2021Jun 18, 2021

• 2021-07-01-shotgun-metagenomics-workshop-summer-school

  Public
  workshopmetagenomicsmicrobiome+ 1shotgun-metagenomics

  Python

  •

  Other

  •0•0•0•0•Updated Jun 16, 2021Jun 16, 2021

• 2021-summer-geospatial-data-workshop

  Public
  HTML

  •

  Other

  •0•0•0•0•Updated Jun 1, 2021Jun 1, 2021

• research-data-management-lesson

  Public
  Carpentries-style lesson on Research Data Management

  research-data-managementrdmcarpentries-lesson

  HTML

  •

  Other

  •0•0•0•0•Updated May 27, 2021May 27, 2021

• microbiome-lesson

  Public
  Carpentry-style lesson on microbiodata data analysis

  HTML

  •

  Other

  •4•0•0•0•Updated Mar 26, 2021Mar 26, 2021

• 2021-March-R-geospatial-data-workshop

  Public
  Website for geospatial data in R online workshop - mid-March 2021 - Science Park Study Group

  HTML

  •

  Other

  •1•1•0•0•Updated Mar 23, 2021Mar 23, 2021