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varsim
PublicVarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applicationssomaticseq
PublicAn ensemble approach to accurately detect somatic mutations using SomaticSeqSeqLib
PublicichorCNA
Publicbwa
Publicfermi-lite
PublicDaedalus
Publicneusomatic
PublicNeuSomatic: Deep convolutional neural networks for accurate somatic mutation detectionswifr
PublicecTMB
Publicrnacocktail
Publicmetasv
Publiclongislnd
PublicIDP
Publichuref-gs
Publicbreakseq2
PublicLSC
Publicpindel
PublicPindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.