Repositories list

• Williams_et_al_2023_TRF_PRX

  Public
  Underlying code for proteomics analysis for this Cell Metabolism Manuscript

  0•0•0•0•Updated Jan 22, 2024Jan 22, 2024

• stim1-data-in-brief

  Public
  R

  •1•1•0•0•Updated Apr 14, 2022Apr 14, 2022

• omin

  Public
  Omics Modeling Integration and Normalization

  jupyter-notebookjupyterlabproteomics+ 5mass-spectrometryomicsjupyter-notebook-extensionjupyterlab-extensionmolecular-physiology

  Python

  •1•1•14•0•Updated Dec 2, 2021Dec 2, 2021

• nr_hdf_wt_acetyl_phospho_tmt10plex

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 2, 2021Dec 2, 2021

• Davidson_et_al_2020_Kac_PRX

  Public
  Repository for proteomic data analysis used in the publication "Extreme Acetylation of the Cardiac Mitochondrial Proteome Does Not Promote Heart Failure."

  heartproteomics-datamitochondria+ 1acetyl-lysine

  Jupyter Notebook

  •0•0•0•0•Updated Oct 1, 2020Oct 1, 2020

• Williams_et_al_2019_Kac_PRX

  Public
  Repository for proteomic data analysis used in the publication "Disruption of acetyl-lysine turnover in muscle mitochondria promotes insulin resistance and redox stress without overt respiratory dysfunction."

  proteomics-datamitochondriaskeletal-muscle+ 1acetyl-lysine

  Jupyter Notebook

  •0•0•0•0•Updated May 24, 2020May 24, 2020

• bioenergetic-calculators

  Public
  A calculator to adjust equilibrium constants in the Creatine Kinase Bioenergetic Clamp. Also, a calculator to adjust the Gibbs Energy of ATP Hydrolysis, the Creatine Kinase Equilibrium constant, and the Adenylate Kinase equilibrium constant for temperature, ionic strength, pH, and free magnesium.

  thermodynamicsbioenergeticsgibbs-energy+ 4creatine-kinaseadenylate-kinaseatp-hydrolysiscalculator

  HTML

  •0•0•0•0•Updated May 19, 2020May 19, 2020

• ATP_Hydrolysis_shinyapp

  Public
  An R Shiny App to adjust and visualize the Gibbs Energy of ATP Hydrolysis for temperature, ionic strength, pH, and free magnesium.

  bioenergeticsgibbs-energyatp-hydrolysis+ 1shiny-app

  R

  •1•0•0•0•Updated May 19, 2020May 19, 2020

• cookiecutter-jupyter-notebook

  Public
  Basic template for projects using Jupyter Notebook .

  Jupyter Notebook

  •0•0•0•0•Updated Apr 30, 2018Apr 30, 2018

• jupyter-notebook-cookiecutter

  Public
  Cookiecutter template for a Python package.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1.8k•0•0•0•Updated Mar 31, 2018Mar 31, 2018

• electron-python-example

  Public
  Electron as GUI of Python Applications

  JavaScript

  •

  Other

  •233•0•0•0•Updated Feb 27, 2017Feb 27, 2017