Repositories list

• species-interaction-dataset-inventory

  Public
  This project provides a list of known projects and studies that contain interaction data, that may or may not have been made available openly.

  0•0•0•0•Updated Dec 28, 2024Dec 28, 2024

• elton

  Public
  Access, review and index existing species interaction datasets

  HTML

  •

  GNU General Public License v3.0

  •2•3•19•0•Updated Dec 27, 2024Dec 27, 2024

• globalbioticinteractions

  Public
  Global Biotic Interactions provides access to existing species interaction datasets

  bioinformaticsparasitesbiology+ 11dietecologybiodiversitydiseasesetl-frameworkfood-websecoinformatics+ 4

  Java

  •

  GNU General Public License v3.0

  •17•126•345•1•Updated Dec 26, 2024Dec 26, 2024

• ucsb-izc

  Public
  University of California Santa Barbara Invertebrate Zoology Collection

  0•0•1•0•Updated Dec 20, 2024Dec 20, 2024

• globalbioticinteractions.github.io

  Public
  source files for GloBI website

  HTML

  •

  MIT License

  •14•8•7•9•Updated Dec 18, 2024Dec 18, 2024

• globinizer

  Public
  Checks whether datasets are ready for GloBI indexing

  Shell

  •

  MIT License

  •2•1•0•0•Updated Dec 6, 2024Dec 6, 2024

• ion2024

  Public
  GloBI index configuration for Ion MC et al. 2024. World of Crayfish™: a web platform towards real-time global mapping of freshwater crayfish and their pathogens. PeerJ 12:e18229 https://doi.org/10.7717/peerj.18229

  Shell

  •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

• ecdysis

  Public
  0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

• dopi

  Public
  index configuration to help GloBI index The Database of Pollinator Interactions (DoPI) documents British pollinator-plant associations at https://www.sussex.ac.uk/lifesci/ebe/dopi

  Shell

  •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• pollinators-of-apocynaceae-database

  Public
  GloBI index configuration for Pollinators of Apocynaceae Database

  0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• companion-planting-decision-support

  Public
  This repository hosts the knowledge-based decision support system for companion planting.

  Jupyter Notebook

  •1•0•0•0•Updated Nov 4, 2024Nov 4, 2024

• Seton-1929

  Public
  claims extracted from Seton, E. Thompson. (19251928). Lives of game animals: an account of those land animals in America, north of the Mexican border, which are considered "game," either because they have held the attention of sportsmen, or received the protection of law. Garden City, N.Y.: Doubleday.

  1•0•0•0•Updated Oct 20, 2024Oct 20, 2024

• nomer

  Public
  maps identifiers and names to other identifiers and names

  HTML

  •

  GNU General Public License v3.0

  •3•19•66•0•Updated Oct 18, 2024Oct 18, 2024

• OBservData

  Public
  Crop Pollination Database

  R

  •

  MIT License

  •4•0•0•0•Updated Oct 7, 2024Oct 7, 2024

• globi-server-scripts

  Public
  bash scripts used for GloBI server

  Shell

  •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

• climbats

  Public
  GloBI index configuration for ClimBats: Froidevaux, J.S.P., Toshkova, N., Barbaro, L. et al., 2023. A species-level trait dataset of bats in Europe and beyond. Science Data 10, 253. https://doi.org/10.1038/s41597-023-02157-4

  0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

• darkcides

  Public
  Configuration for GloBI to index Tanalgo, Krizler; Tabora, John Aries G.; Oliveira, Hernani Fernandes Magalhães; Haelewaters, Danny; Beranek, Chad T.; Otálora-Ardila, Aída; et al. (2021). Metadata for: DarkCideS 1.0, a global database for bats in karsts and caves. figshare. Dataset. https://doi.org/10.6084/m9.figshare.16413405.v4

  0•0•1•0•Updated Sep 16, 2024Sep 16, 2024

• cmnh-izc

  Public
  0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

• virus-host-db

  Public
  Mihara, T., Nishimura, Y., Shimizu, Y., Nishiyama, H., Yoshikawa, G., Uehara, H., Hingamp, P., Goto, S., and Ogata, H.; Linking virus genomes with host taxonomy. Viruses 8, 66 doi:10.3390/v8030066 (2016).

  0•1•1•0•Updated Aug 20, 2024Aug 20, 2024

• wardeh2015

  Public
  0•0•0•0•Updated Aug 16, 2024Aug 16, 2024

• brose

  Public
  Dataset extracted from Brose 2005

  0•0•1•0•Updated Aug 10, 2024Aug 10, 2024

• taxon-graph-builder

  Public
  Builder for Global Biotic Interactions Taxon Graph

  Makefile

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Jul 24, 2024Jul 24, 2024

• mycoportal

  Public
  configuration for indexing MyCoPortal via Symbiota RSS feed

  0•0•2•0•Updated Jul 19, 2024Jul 19, 2024

• vertnet

  Public
  GloBI-enabled configuration for VertNet.org

  0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• zenodo-metadata

  Public
  This repository contains configuration for GloBI to help index Zenodo publications with species interaction annotations.

  0•0•1•0•Updated Jul 18, 2024Jul 18, 2024

• vectorbase

  Public
  0•0•2•0•Updated Jul 18, 2024Jul 18, 2024

• Catalogue-of-Afrotropical-Bees

  Public
  from http://doi.org/10.15468/u9ezbh : "The purpose of this catalogue is to list the valid names, nomenclatorial history of, and references citing, the described bees of sub-saharan Africa and the western Indian Ocean islands, excluding the honey bee (Apis mellifera Linnaeus). The countries in which species occur are listed, as well as the type s…

  0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• yale-peabody

  Public
  GloBI configuration for indexing collections of Yale University Peabody Museum

  1•0•1•0•Updated Jul 18, 2024Jul 18, 2024

• NeoBat_Interactions

  Public
  Repository of the NeoBat Interactions data paper

  R

  •

  GNU General Public License v3.0

  •4•0•0•0•Updated Jul 13, 2024Jul 13, 2024

• name-alignment-template

  Public template
  align names with known taxonomic resources

  Creative Commons Zero v1.0 Universal

  •6•3•5•0•Updated Jul 12, 2024Jul 12, 2024