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    14 repositories

    • m2aia

      Public
      Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)
      dockerinteractive-analysismulti-modal3d-reconstructionmass-spectrometry-imaging
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •4•20•5•0•Updated Oct 27, 2024Oct 27, 2024

    • mitk

      Public
      Modified version of MITK required to build M²aia
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • mitk-elastix

      Public
      This is a MITK extension that provides utilities and plugins for image-based registration using the Elastix registration framework.
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Oct 25, 2024Oct 25, 2024

    • mitk-docker

      Public
      This project provides utilities to run Docker commands from within MITK and Docker based processing views.
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Oct 25, 2024Oct 25, 2024

    • m2aia-docker

      Public
      Dockerfile
      •0•0•0•0•Updated May 4, 2024May 4, 2024

    • pym2aia

      Public
      pyM²aia is a Python package for memory-efficient access and processing of mass spectrometry image data. The I/O functionality is derived from the interactive desktop application M²aia. Special features are the batch generator utilities for deep learning applications.
      deep-learningmass-spectrometry-imagingpython
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•6•1•1•Updated Jan 31, 2024Jan 31, 2024

    • pym2aia-examples

      Public
      memory-efficient Python interface for mass spectrometry imaging with focus on Deep Learning
      Jupyter Notebook
      •1•2•0•0•Updated Jan 26, 2024Jan 26, 2024

    • MITK-ProjectTemplate

      Public template
      This is a template for MITK based projects.
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •30•0•0•0•Updated Nov 30, 2023Nov 30, 2023

    • mitk-m2olie

      Public archive
      The Medical Imaging Interaction Toolkit.
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •331•0•0•0•Updated Oct 31, 2023Oct 31, 2023

    • .github

      Public
      0•0•0•0•Updated Aug 2, 2023Aug 2, 2023

    • pym2aia-examples-msiPL

      Public
      Python Implementation of the msiPL by Abdelmoula et al.
      Python
      •6•0•0•0•Updated Jul 21, 2023Jul 21, 2023

    • psi-ms-CV

      Public
      HUPO-PSI mass spectrometry CV
      Python
      •
      Other
      •38•0•0•0•Updated Sep 30, 2022Sep 30, 2022

    • pym2aia-examples-MSI-self-supervised-clustering

      Public
      Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•0•Updated May 16, 2022May 16, 2022

    • imzML

      Public
      A common data format for mass spectrometry imaging
      1•0•0•0•Updated Apr 12, 2022Apr 12, 2022