{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"22125_algobio_nn","owner":"mnielLab","isFork":false,"description":"Repository for the neural networks part of (22125) Algorithms in Bioinformatics ","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-12T13:00:22.868Z"}},{"type":"Public","name":"NetTCR-2.2","owner":"mnielLab","isFork":false,"description":"Sequence-based prediction of peptide-TCR interactions using paired chain data","allTopics":["machine-learning","bioinformatics","immunology","t-cell-receptor","immunoinformatics","epitopes"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":6,"forksCount":5,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-27T14:15:44.549Z"}},{"type":"Public","name":"NetTCR-IMMREP-2023","owner":"mnielLab","isFork":false,"description":"NetTCR entries for the IMMREP 2023 kaggle competition","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-20T08:14:48.915Z"}},{"type":"Public","name":"NetTCR-2.1","owner":"mnielLab","isFork":false,"description":"This repo contains the code to train and test NetTCR-2.1 models","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-23T15:41:37.129Z"}},{"type":"Public","name":"ITRAP_benchmark","owner":"mnielLab","isFork":false,"description":"This repo contains the 10x Genomic datasets filtered using ATRAP and ICON denoising frameworks.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-11T13:39:55.199Z"}},{"type":"Public","name":"itrap","owner":"mnielLab","isFork":false,"description":"Improved T-cell Receptor Antigen Pairing","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-05T20:04:53.658Z"}},{"type":"Public","name":"Master_MFJ","owner":"mnielLab","isFork":false,"description":"This repository contains the model architectures and code used for training the models in the Master thesis by Mathias Fynbo Jensen","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-06T10:03:43.305Z"}},{"type":"Public","name":"train_NetTCR","owner":"mnielLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-09-20T08:07:03.503Z"}},{"type":"Public","name":"NetTCR-2.0","owner":"mnielLab","isFork":false,"description":"NetTCR-2.0. Sequence-based prediction of peptide-TCR binding","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":3,"starsCount":32,"forksCount":9,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-03-29T10:49:26.504Z"}},{"type":"Public","name":"NetMHCphosPan-1.0","owner":"mnielLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-08-12T11:34:28.023Z"}},{"type":"Public","name":"netTCR","owner":"mnielLab","isFork":false,"description":"predicting peptide and TCR interaction","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":4,"starsCount":20,"forksCount":5,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-01-27T20:30:51.140Z"}}],"repositoryCount":11,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"mnielLab repositories"}