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    9 repositories

    • MTBseq-nf

      Public
      MTBSeq made simple and easy using Nextflow and nf-core standard.
      genomicsnextflowmtbmycobacterium-tuberculosis
      Nextflow
      •
      MIT License
      •1•8•11•0•Updated Sep 18, 2024Sep 18, 2024

    • TB-DROP

      Public
      Deep Learning-based A Tool used to Drug Resistance Prediction of Mycobacterium tuberculosis Utilizing Whole Genome Mutations
      Python
      •1•0•0•0•Updated Nov 27, 2023Nov 27, 2023

    • clockwork

      Public
      CRyPTIC data processing pipelines
      HTML
      •
      MIT License
      •22•0•0•0•Updated Oct 16, 2023Oct 16, 2023

    • MycoVarP-nf

      Public
      Groovy
      •
      MIT License
      •0•3•1•0•Updated Apr 7, 2023Apr 7, 2023

    • MAGMA

      Public
      MAGMA pipeline (based on XBS-core and Nextflow)
      Nextflow
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Apr 1, 2023Apr 1, 2023

    • bovisanalyzer

      Public
      nextflow pipeline for analyzing Mycobacterium bovis genomes
      Nextflow
      •
      MIT License
      •2•0•0•0•Updated Mar 16, 2023Mar 16, 2023

    • ONT-TB-NF

      Public
      Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Nov 22, 2022Nov 22, 2022

    • MTB-CNN

      Public
      CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)
      Jupyter Notebook
      •10•0•0•0•Updated Jun 15, 2022Jun 15, 2022

    • NGS-analysis-from-TB-sputum

      Public
      A pipeline to remove contaminant NGS reads from TB-sputum samples
      Makefile
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 25, 2021Oct 25, 2021