Repositories list

• WDL_Tools

  Public
  WDL workflow language program, developed for singlecell rna sequencing data analysis, maintained by @OOAAHH(SunHao) .

  pythonworkflowbioinformatics+ 7scrna-seqspatial-analysisatac-seqcromwellwdl-workflowcellrangerstarsolo

  WDL

  •1•2•0•0•Updated Oct 30, 2024Oct 30, 2024

• SCCAF-D

  Public
  Cell type deconvolution

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

• SCCAF-D_reproducibility

  Public
  example of applying SCCAF-D

  Jupyter Notebook

  •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• rnacentre.github.io

  Public
  Miao Lab website

  SCSS

  •1.2k•0•0•0•Updated Oct 10, 2024Oct 10, 2024

• DG_SCOmics

  Public
  Maintained by @OOAAHH(SunHao) .

  1•0•0•0•Updated Sep 29, 2024Sep 29, 2024

• scAnnot

  Public
  single cell annotation

  Jupyter Notebook

  •

  Apache License 2.0

  •0•5•1•0•Updated Sep 24, 2024Sep 24, 2024

• BrainCellAtlas_reproducibility

  Public
  Notebooks to reproduce the results of Brain Cell Atlas

  Jupyter Notebook

  •4•2•0•0•Updated Sep 24, 2024Sep 24, 2024

• BrainCellAtlas-reproducibility

  Public
  This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.

  Jupyter Notebook

  •4•15•1•0•Updated Sep 24, 2024Sep 24, 2024

• scDenorm_reproducibility

  Public
  Notebooks for reproduce scDenorm's results

  Jupyter Notebook

  •1•0•0•0•Updated Sep 24, 2024Sep 24, 2024

• scDenorm-reproducibility

  Public
  this repo is not maintained anymore, please refer to: [https://github.com/rnacentre/scDenorm_reproducibility](https://github.com/rnacentre/scDenorm_reproducibility)

  Jupyter Notebook

  •1•0•0•0•Updated Sep 24, 2024Sep 24, 2024

• Kubeflow_pipline_module

  Public
  Kubeflow_pipline_module, use docker as base component, which as an alternative to bioos. Maintained by @OOAAHH(SunHao) .

  Python

  •1•0•0•0•Updated Jul 1, 2024Jul 1, 2024

• BCAGitPages

  Public
  Vue

  •6•1•0•0•Updated Jun 12, 2024Jun 12, 2024

• gznl-rdc

  Public
  GZNL - Respiratory Data Centre: Facilitating Respiratory Disease Research with big data

  HTML

  •2•1•0•0•Updated May 28, 2024May 28, 2024

• RCA_Web

  Public
  Vue

  •1•0•0•0•Updated May 21, 2024May 21, 2024

• cirro_temp

  Public
  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated May 15, 2024May 15, 2024

• warp-tools

  Public
  This repository contains all containers that WARP uses.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•0•0•Updated May 11, 2024May 11, 2024

• RCA_web_cxf

  Public
  HTML

  •1•0•0•0•Updated Apr 29, 2024Apr 29, 2024

• warp

  Public
  WDL Analysis Research Pipelines

  WDL

  •

  BSD 3-Clause "New" or "Revised" License

  •97•0•0•0•Updated Apr 29, 2024Apr 29, 2024

• scDenorm

  Public
  scDenorm: a denormalization tool for single-cell transcriptomics data

  Jupyter Notebook

  •

  Apache License 2.0

  •1•1•0•1•Updated Jan 28, 2024Jan 28, 2024

• sccaf

  Public
  Single-Cell Clustering Assessment Framework

  Jupyter Notebook

  •

  MIT License

  •19•0•0•0•Updated Nov 14, 2022Nov 14, 2022

• test

  Public
  0•0•0•0•Updated Nov 14, 2022Nov 14, 2022