{"payload":{"pageCount":3,"repositories":[{"type":"Public","name":"immuneml_tools","owner":"uio-bmi","isFork":false,"description":"Galaxy tools using the immuneML conda package.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-30T09:29:47.113Z"}},{"type":"Public","name":"ligo","owner":"uio-bmi","isFork":false,"description":"LIgO is a tool for simulation of adaptive immune receptors and repertoires.","allTopics":["simulation","antibody","tcr","bcr","airr"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-23T12:46:16.638Z"}},{"type":"Public","name":"fdr_hacking","owner":"uio-bmi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":0,"starsCount":2,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-08T10:42:11.464Z"}},{"type":"Public","name":"starsigndna-doc","owner":"uio-bmi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-03T16:56:29.788Z"}},{"type":"Public","name":"immuneML","owner":"uio-bmi","isFork":false,"description":"immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.","allTopics":["tcr","bcr","immune-repertoire","benchmarking","classification","machine-learning-analysis","adaptive-immune-receptors","airr"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":60,"forksCount":29,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-02T13:23:39.213Z"}},{"type":"Public","name":"StarSignDNA","owner":"uio-bmi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-27T18:32:19.664Z"}},{"type":"Public","name":"IN-BIOSx000","owner":"uio-bmi","isFork":true,"description":"Course material for the IN-BIOSx000 course \"Sequencing technologies, data analysis, and applications\" at the University of Oslo","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":10,"license":"Creative Commons Zero v1.0 Universal","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,1,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8,0,2,0,0,0,0,0,0,3,0,0,1,2,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-18T14:27:45.648Z"}},{"type":"Public","name":"dagsim","owner":"uio-bmi","isFork":false,"description":"A framework and specification language for simulating data based on graphical models","allTopics":["simulation","bayesian-network","causal-models","directed-acyclic-graph","python"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":18,"forksCount":3,"license":"GNU Affero General Public License v3.0","participation":[0,0,0,0,0,0,0,1,0,1,0,0,0,0,2,0,0,0,26,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-14T12:36:53.183Z"}},{"type":"Public","name":"kmercount","owner":"uio-bmi","isFork":false,"description":"Simple kmer counter using Bloom filter and efficient hash function","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":3,"starsCount":2,"forksCount":1,"license":"GNU Affero General Public License v3.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-02T16:02:52.969Z"}},{"type":"Public","name":"localega-tsd-proxy","owner":"uio-bmi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":2,"issueCount":6,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-19T14:24:59.699Z"}},{"type":"Public","name":"SimCal","owner":"uio-bmi","isFork":false,"description":"Simulation Calibration codebase for evaluating ML pipelines between real and learned worlds","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-22T03:07:49.435Z"}},{"type":"Public","name":"crypt4gh","owner":"uio-bmi","isFork":false,"description":"Crypt4GH standard implementation","allTopics":["bioinformatics","encryption","crypt4gh"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":8,"issueCount":2,"starsCount":2,"forksCount":6,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-09T04:57:04.290Z"}},{"type":"Public","name":"tsd-file-api-client","owner":"uio-bmi","isFork":false,"description":"TSD File API Client","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":5,"issueCount":2,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-06T04:28:27.413Z"}},{"type":"Public","name":"LocalEGA-deploy-swarm-fork","owner":"uio-bmi","isFork":true,"description":"Docker Swarm deployment of LocalEGA","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-19T13:18:55.751Z"}},{"type":"Public","name":"SynthPwr","owner":"uio-bmi","isFork":false,"description":"Synthetic framework for stress testing the parameters and statistical power of epigenetic power calculators","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-07T14:19:10.199Z"}},{"type":"Public","name":"mq-interceptor","owner":"uio-bmi","isFork":false,"description":"RabbitMQ interceptor for LocalEGA","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":5,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-14T17:53:38.311Z"}},{"type":"Public","name":"VirMake","owner":"uio-bmi","isFork":false,"description":"VirMake is a Snakemake based pipeline that offers viral metagenic data analysis on paired-end data. It offers taxonomic and functional annotation, supports offline running and support for HPC cluster execution. It is made for Linux based systems and has been tested on SLURM cluster execution.","allTopics":["masterthesis"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-03T11:39:53.391Z"}},{"type":"Public","name":"stats_for_cs","owner":"uio-bmi","isFork":false,"description":"Accompanying notebooks for the new stats course for computer scientists with simulations","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-18T13:36:12.283Z"}},{"type":"Public","name":"CausalAIRR","owner":"uio-bmi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":9,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-22T12:30:38.962Z"}},{"type":"Public","name":"compairr","owner":"uio-bmi","isFork":false,"description":"Comparison of Adaptive Immune Receptor Repertoires","allTopics":["bioinformatics","immunology","rep-seq","immunoinformatics","immune-repertoire","repertoire-analysis","airr"],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":3,"starsCount":25,"forksCount":5,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-16T08:52:15.078Z"}},{"type":"Public","name":"cookiecutter-python-research-project","owner":"uio-bmi","isFork":false,"description":"A cookiecutter for easier continous integration in a research project based on Python code","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-24T09:04:56.691Z"}},{"type":"Public","name":"numpy_alignments","owner":"uio-bmi","isFork":false,"description":"Simple Python module for efficient storing and comparison of mapped reads using numpy","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-13T14:39:58.777Z"}},{"type":"Public","name":"python-types-examples","owner":"uio-bmi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-14T05:01:40.618Z"}},{"type":"Public","name":"localega-broker","owner":"uio-bmi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":2,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-08T09:04:32.723Z"}},{"type":"Public","name":"machine_learning_in_comp_bio_exercises","owner":"uio-bmi","isFork":false,"description":"These exercises are a part of the IN-BIOS5000 course at UiO, for the intro lectures on machine learning in computational biology.","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-30T14:39:25.380Z"}},{"type":"Public","name":"localega-proxy-webserver","owner":"uio-bmi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-27T07:07:23.604Z"}},{"type":"Public","name":"statistical_genomics_exercises","owner":"uio-bmi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-26T20:27:08.738Z"}},{"type":"Public","name":"pharmacoepi_simulation_workshop","owner":"uio-bmi","isFork":false,"description":"The material for the simulation session at the (Epi)genetics in Pharmacoepidemiology workshop","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-09-26T12:16:37.309Z"}},{"type":"Public","name":"lega-uploader","owner":"uio-bmi","isFork":false,"description":"LocalEGA Data Upload Tool","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":3,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-09-05T13:30:23.119Z"}},{"type":"Public","name":"dagsim_usecases","owner":"uio-bmi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-27T08:08:06.941Z"}}],"repositoryCount":82,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"uio-bmi repositories"}