univieCUBE

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11 repositories

PyCoMo
Public
Jupyter Notebook
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MIT License
•0•4•0•0•Updated Nov 21, 2024Nov 21, 2024
deepnog
Public
Protein orthologous group assignment with deep learning
machine-learning deep-learning protein-sequences orthology-inference orthology-assignments
Python
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BSD 3-Clause "New" or "Revised" License
•8•26•5•1•Updated Jul 25, 2024Jul 25, 2024
ScyNet
Public
ScyNet: Visualisation of community metabolic models in Cytoscape
community data-visualization cytoscape metabolic-models
Java
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MIT License
•0•2•0•0•Updated Jul 23, 2024Jul 23, 2024
BMDMmodeling
Public
Scripts and data from modeling of bone-marrow-derived macrophages
HTML
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MIT License
•1•0•0•0•Updated Jul 8, 2024Jul 8, 2024
genskew
Public
GenSkew is an application for computing and plotting nucleotide skew data.
bioinformatics nucleotides skewness
Python
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GNU General Public License v3.0
•1•1•0•0•Updated Oct 11, 2022Oct 11, 2022
phenotrex
Public
Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn
machine-learning bioinformatics data-driven svm metagenomics xgboost xgb comparative-genomics sequence-analysis phenotype-prediction
Python
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Other
•5•8•0•0•Updated Sep 10, 2021Sep 10, 2021
gepard
Public
Genome Pair Rapid Dotter
Java
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MIT License
•16•61•3•0•Updated Sep 2, 2021Sep 2, 2021
megalodon
Public
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
Python
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Other
•30•0•0•0•Updated Mar 23, 2021Mar 23, 2021
taiyaki
Public
Training models for basecalling Oxford Nanopore reads
Python
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Other
•42•0•0•0•Updated Mar 19, 2021Mar 19, 2021
bioconda-recipes
Public
Conda recipes for the bioconda channel.
Shell
•3.3k•0•0•0•Updated Mar 3, 2021Mar 3, 2021
PICA
Public
Microbial phenotype prediction - succeeded by phenotrex ->
Python
•4•3•0•0•Updated Jan 30, 2020Jan 30, 2020