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@vatlab Laboratory of Variant Analysis Tools

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    49 repositories

    • jupyterlab-sos

      Public
      Jupyterlab extension for SoS Polyglot Notebook and Workflow Engine, allows multiple kernels in one notebook
      jupyterlab-extension
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •6•73•12•1•Updated Oct 18, 2024Oct 18, 2024

    • sos

      Public
      SoS workflow system for daily data analysis
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •45•274•65•0•Updated Oct 17, 2024Oct 17, 2024

    • sos-notebook

      Public
      Multi-language Jupyter Notebook
      jupyter-kernels
      CSS
      •
      BSD 3-Clause "New" or "Revised" License
      •17•176•41•1•Updated Oct 17, 2024Oct 17, 2024

    • codemirror-sos

      Public
      A codemirror language package for SoS
      TypeScript
      •
      MIT License
      •0•0•2•0•Updated Oct 6, 2024Oct 6, 2024

    • transient-display-data

      Public
      A JupyterLab extension that displays transient display messages in console window
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•6•2•1•Updated Sep 3, 2024Sep 3, 2024

    • sos-docs

      Public
      Documentation of SoS
      Jupyter Notebook
      •
      MIT License
      •11•2•9•0•Updated Aug 11, 2024Aug 11, 2024

    • sos-pbs

      Public
      PBS task engine for SoS
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•5•0•Updated Apr 14, 2024Apr 14, 2024

    • sos-python

      Public
      SoS extension for Python2 and Python3
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • sos-r

      Public
      SoS extension for R
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•3•7•1•Updated Aug 30, 2023Aug 30, 2023

    • sos-matlab

      Public
      SoS extension for Matlab and Octave
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•2•1•0•Updated Aug 3, 2023Aug 3, 2023

    • sos-ruby

      Public
      SoS Notebook extension for ruby
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Feb 18, 2023Feb 18, 2023

    • sos-scilab

      Public
      sos language module for scilab
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•0•Updated Feb 18, 2023Feb 18, 2023

    • sos-sas

      Public
      SoS extension for SAS
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Feb 18, 2023Feb 18, 2023

    • sos-julia

      Public
      SoS extension for Julia
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•7•1•Updated Feb 18, 2023Feb 18, 2023

    • sos-javascript

      Public
      SoS extension for JavaScript
      Python
      •0•0•2•0•Updated Feb 18, 2023Feb 18, 2023

    • sos-bash

      Public
      SoS extension for Bash scripts.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Feb 18, 2023Feb 18, 2023

    • toolbar-demo

      Public
      TypeScript
      •0•0•1•0•Updated Aug 1, 2022Aug 1, 2022

    • blog

      Public
      blog for vatlab
      HTML
      •1•0•7•0•Updated Apr 5, 2022Apr 5, 2022

    • jnbinder

      Public
      Repository of Jupyter Notebooks
      Dockerfile
      •1•3•4•0•Updated Feb 9, 2022Feb 9, 2022

    • varianttools

      Public archive
      software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
      C
      •
      GNU General Public License v3.0
      •4•31•53•1•Updated Jan 24, 2022Jan 24, 2022

    • sos-rmarkdown

      Public
      A Rmarkdown to SoS Notebook converter
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•10•2•0•Updated Oct 22, 2021Oct 22, 2021

    • jupyterlab-transient-display-data-feedstock

      Public
      A conda-smithy repository for jupyterlab-transient-display-data.
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Jul 29, 2021Jul 29, 2021

    • nbconvert

      Public
      Jupyter Notebook Conversion
      Python
      •
      Other
      •569•0•0•0•Updated Dec 25, 2020Dec 25, 2020

    • sos-papermill

      Public
      Batch executor of sos notebooks
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•6•4•0•Updated Sep 1, 2020Sep 1, 2020

    • markdown-kernel

      Public
      A markdown kernel for Jupyter
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•24•1•0•Updated Aug 24, 2020Aug 24, 2020

    • sos-notebook-feedstock

      Public
      A conda-smithy repository for sos-notebook.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•0•Updated Jul 2, 2020Jul 2, 2020

    • vtools_web

      Public
      Web interface and app for variant tools
      JavaScript
      •0•0•0•0•Updated May 4, 2020May 4, 2020

    • vat-docs

      Public
      Documentation for Variant Tools.
      HTML
      •0•4•12•0•Updated Jan 21, 2020Jan 21, 2020

    • jupyter_client

      Public
      Jupyter protocol client APIs
      Python
      •
      Other
      •283•0•0•0•Updated Dec 23, 2019Dec 23, 2019

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.3k•0•0•0•Updated Dec 3, 2019Dec 3, 2019