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    14 repositories

    • MesoLF

      Public
      Mesoscale volumetric light-field (MesoLF) imaging
      MATLAB
      •
      Other
      •1•5•1•1•Updated May 20, 2024May 20, 2024

    • scaling_analysis

      Public
      Analysis of the dimensionality of neuronal population dynamics as a function of neuron number
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Mar 8, 2024Mar 8, 2024

    • vaziri_dandi

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 21, 2024Feb 21, 2024

    • PyBeamProfiler

      Public
      A laser beam profiler app for FLIR cameras
      Jupyter Notebook
      •0•0•0•0•Updated Oct 25, 2023Oct 25, 2023

    • MAxiMuM_processing_tools

      Public
      Pipeline based on NoRMCorre and CaImAn for segmenting large FOV, volumetric Light Bead Microscopy data.
      MATLAB
      •1•3•0•1•Updated Mar 18, 2023Mar 18, 2023

    • grating_whisker_belt_ctrl

      Public
      Read treadmill encoder, generate visual & whisker stimulus, flexible triggering
      MATLAB
      •0•0•0•0•Updated Mar 25, 2022Mar 25, 2022

    • Treadmill_control

      Public
      Scripts for controlling treadmill and stimuli delivery.
      Python
      •0•1•0•0•Updated May 25, 2021May 25, 2021

    • stytra

      Public
      A modular package to control stimulation and track behaviour
      Python
      •
      GNU General Public License v3.0
      •27•0•0•0•Updated Jun 26, 2020Jun 26, 2020

    • neurolabware_scanbox_utils_docs

      Public
      Collected code, issues and wisdom on the Neurolabware Mesoscope and ScanBox software
      microscopemultiphotonmesoscope
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Jun 25, 2020Jun 25, 2020

    • SID

      Public
      Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)
      calcium-imagingsource-extractionlight-field
      MATLAB
      •
      Other
      •7•27•2•0•Updated Feb 26, 2020Feb 26, 2020

    • CaImAn

      Public
      Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •370•1•0•0•Updated Feb 20, 2018Feb 20, 2018

    • CaImAn-MATLAB

      Public
      Complete Matlab pipeline for large scale calcium imaging data analysis
      MATLAB
      •
      GNU General Public License v2.0
      •147•2•0•0•Updated Feb 20, 2018Feb 20, 2018

    • Miniscope_DAQ_Firmware

      Public
      Source code and firmware image
      C
      •4•1•0•0•Updated Feb 19, 2017Feb 19, 2017

    • Miniscope_DAQ_Software

      Public
      Data acquisition source code for Miniscope project.
      C++
      •16•1•0•0•Updated Jul 21, 2016Jul 21, 2016